Multiple sequence alignment - TraesCS1A01G223900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G223900 chr1A 100.000 4467 0 0 1 4467 394318860 394323326 0.000000e+00 8250.0
1 TraesCS1A01G223900 chr1A 90.533 507 47 1 1 507 302940103 302939598 0.000000e+00 669.0
2 TraesCS1A01G223900 chr1A 100.000 97 0 0 3967 4063 394322731 394322827 3.550000e-41 180.0
3 TraesCS1A01G223900 chr1A 100.000 97 0 0 3872 3968 394322826 394322922 3.550000e-41 180.0
4 TraesCS1A01G223900 chr1A 94.231 52 2 1 4248 4299 394323053 394323103 1.330000e-10 78.7
5 TraesCS1A01G223900 chr1A 94.231 52 2 1 4194 4244 394323107 394323158 1.330000e-10 78.7
6 TraesCS1A01G223900 chr1B 93.343 1367 70 8 1993 3352 424083999 424085351 0.000000e+00 2001.0
7 TraesCS1A01G223900 chr1B 90.057 1237 66 21 733 1927 424082539 424083760 0.000000e+00 1550.0
8 TraesCS1A01G223900 chr1B 93.631 157 10 0 503 659 424082007 424082163 7.470000e-58 235.0
9 TraesCS1A01G223900 chr1B 86.184 152 19 2 3522 3673 328923254 328923403 3.580000e-36 163.0
10 TraesCS1A01G223900 chr1B 94.828 58 3 0 1935 1992 424083914 424083971 1.710000e-14 91.6
11 TraesCS1A01G223900 chr1D 89.337 1191 67 29 787 1927 314012353 314013533 0.000000e+00 1441.0
12 TraesCS1A01G223900 chr1D 91.996 987 44 20 2497 3472 314014421 314015383 0.000000e+00 1352.0
13 TraesCS1A01G223900 chr1D 89.655 580 39 12 1935 2498 314013688 314014262 0.000000e+00 719.0
14 TraesCS1A01G223900 chr1D 83.243 370 34 8 3511 3873 229877597 229877945 9.330000e-82 315.0
15 TraesCS1A01G223900 chr1D 98.214 112 2 0 555 666 314012053 314012164 3.530000e-46 196.0
16 TraesCS1A01G223900 chr1D 100.000 30 0 0 1652 1681 314014024 314013995 6.240000e-04 56.5
17 TraesCS1A01G223900 chr2A 91.865 504 41 0 1 504 755625668 755626171 0.000000e+00 704.0
18 TraesCS1A01G223900 chr2A 84.184 392 39 7 3522 3910 547791759 547792130 4.250000e-95 359.0
19 TraesCS1A01G223900 chr2A 81.882 425 43 21 3495 3910 566977830 566977431 1.200000e-85 327.0
20 TraesCS1A01G223900 chr2A 82.595 316 31 7 3599 3910 636911538 636911833 1.590000e-64 257.0
21 TraesCS1A01G223900 chr2A 82.041 245 24 10 4006 4244 547792107 547792337 1.640000e-44 191.0
22 TraesCS1A01G223900 chr7A 91.535 508 41 2 1 508 670301892 670301387 0.000000e+00 699.0
23 TraesCS1A01G223900 chr7A 91.535 508 38 1 1 508 91800703 91800201 0.000000e+00 695.0
24 TraesCS1A01G223900 chr7A 91.071 504 43 2 1 504 548795222 548795723 0.000000e+00 680.0
25 TraesCS1A01G223900 chr7A 90.533 507 47 1 1 507 705562011 705561506 0.000000e+00 669.0
26 TraesCS1A01G223900 chr7A 82.075 424 36 19 3497 3910 102566794 102567187 4.310000e-85 326.0
27 TraesCS1A01G223900 chr7A 89.212 241 23 1 4006 4243 102567164 102567404 9.390000e-77 298.0
28 TraesCS1A01G223900 chr6A 91.321 507 44 0 1 507 506666601 506666095 0.000000e+00 693.0
29 TraesCS1A01G223900 chr4A 91.389 511 36 8 1 507 565736349 565735843 0.000000e+00 693.0
30 TraesCS1A01G223900 chr3A 91.434 502 43 0 1 502 681729119 681728618 0.000000e+00 689.0
31 TraesCS1A01G223900 chr5A 84.951 618 76 9 1024 1634 670272455 670271848 1.060000e-170 610.0
32 TraesCS1A01G223900 chr5A 83.841 427 37 17 3495 3910 534944714 534945119 1.170000e-100 377.0
33 TraesCS1A01G223900 chr5A 81.384 419 36 16 3499 3910 702908883 702908500 2.020000e-78 303.0
34 TraesCS1A01G223900 chr4B 82.637 622 82 13 1024 1634 625225589 625224983 1.100000e-145 527.0
35 TraesCS1A01G223900 chr4B 76.036 893 133 37 2147 3013 625224619 625223782 5.420000e-104 388.0
36 TraesCS1A01G223900 chr4D 81.511 622 81 16 1024 1634 488507193 488506595 8.690000e-132 481.0
37 TraesCS1A01G223900 chr4D 76.931 958 130 38 2099 3001 488506156 488505235 1.130000e-125 460.0
38 TraesCS1A01G223900 chr7D 84.248 419 39 7 3499 3910 124535081 124534683 2.520000e-102 383.0
39 TraesCS1A01G223900 chr2D 87.291 299 27 7 3494 3785 377110839 377110545 9.260000e-87 331.0
40 TraesCS1A01G223900 chr3D 85.714 308 44 0 1048 1355 253662008 253662315 4.310000e-85 326.0
41 TraesCS1A01G223900 chr3D 90.385 52 4 1 555 606 533921492 533921542 2.880000e-07 67.6
42 TraesCS1A01G223900 chr2B 84.459 296 34 7 3499 3785 448580676 448580384 9.460000e-72 281.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G223900 chr1A 394318860 394323326 4466 False 1753.48 8250 97.69240 1 4467 5 chr1A.!!$F1 4466
1 TraesCS1A01G223900 chr1A 302939598 302940103 505 True 669.00 669 90.53300 1 507 1 chr1A.!!$R1 506
2 TraesCS1A01G223900 chr1B 424082007 424085351 3344 False 969.40 2001 92.96475 503 3352 4 chr1B.!!$F2 2849
3 TraesCS1A01G223900 chr1D 314012053 314015383 3330 False 927.00 1441 92.30050 555 3472 4 chr1D.!!$F2 2917
4 TraesCS1A01G223900 chr2A 755625668 755626171 503 False 704.00 704 91.86500 1 504 1 chr2A.!!$F2 503
5 TraesCS1A01G223900 chr2A 547791759 547792337 578 False 275.00 359 83.11250 3522 4244 2 chr2A.!!$F3 722
6 TraesCS1A01G223900 chr7A 670301387 670301892 505 True 699.00 699 91.53500 1 508 1 chr7A.!!$R2 507
7 TraesCS1A01G223900 chr7A 91800201 91800703 502 True 695.00 695 91.53500 1 508 1 chr7A.!!$R1 507
8 TraesCS1A01G223900 chr7A 548795222 548795723 501 False 680.00 680 91.07100 1 504 1 chr7A.!!$F1 503
9 TraesCS1A01G223900 chr7A 705561506 705562011 505 True 669.00 669 90.53300 1 507 1 chr7A.!!$R3 506
10 TraesCS1A01G223900 chr7A 102566794 102567404 610 False 312.00 326 85.64350 3497 4243 2 chr7A.!!$F2 746
11 TraesCS1A01G223900 chr6A 506666095 506666601 506 True 693.00 693 91.32100 1 507 1 chr6A.!!$R1 506
12 TraesCS1A01G223900 chr4A 565735843 565736349 506 True 693.00 693 91.38900 1 507 1 chr4A.!!$R1 506
13 TraesCS1A01G223900 chr3A 681728618 681729119 501 True 689.00 689 91.43400 1 502 1 chr3A.!!$R1 501
14 TraesCS1A01G223900 chr5A 670271848 670272455 607 True 610.00 610 84.95100 1024 1634 1 chr5A.!!$R1 610
15 TraesCS1A01G223900 chr4B 625223782 625225589 1807 True 457.50 527 79.33650 1024 3013 2 chr4B.!!$R1 1989
16 TraesCS1A01G223900 chr4D 488505235 488507193 1958 True 470.50 481 79.22100 1024 3001 2 chr4D.!!$R1 1977

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
327 329 0.799393 TCGCGCCAAAAATGATTCGA 59.201 45.0 0.0 0.0 0.0 3.71 F
1611 1959 0.040958 CGCTGTGCTCTTGTTTCACC 60.041 55.0 0.0 0.0 0.0 4.02 F
1843 2223 0.178990 AAGAGGGACAGGGTTTGCAC 60.179 55.0 0.0 0.0 0.0 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1728 2089 0.251341 AAGCTCAACTTCGGGGCAAT 60.251 50.0 0.00 0.0 30.77 3.56 R
3337 4235 0.036388 TTCGCCTTTCAGTGGGCTAG 60.036 55.0 7.22 0.0 45.57 3.42 R
3646 4548 0.044092 TCTCTGGGAGGCCAATGGTA 59.956 55.0 5.01 0.0 0.00 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.443872 CGGCGGTGTAGTGTCTGTC 60.444 63.158 0.00 0.00 0.00 3.51
29 30 1.863662 CGGCGGTGTAGTGTCTGTCT 61.864 60.000 0.00 0.00 0.00 3.41
186 187 2.092049 TGAGGCATCAATGAAGGCTGAT 60.092 45.455 18.95 0.00 36.36 2.90
277 279 0.800300 GAAGCGGCGAGAAGAGAGTG 60.800 60.000 12.98 0.00 0.00 3.51
327 329 0.799393 TCGCGCCAAAAATGATTCGA 59.201 45.000 0.00 0.00 0.00 3.71
421 424 1.542547 GCGAAAACTGGGTCCTTGAGA 60.543 52.381 0.00 0.00 0.00 3.27
424 427 3.551846 GAAAACTGGGTCCTTGAGAACA 58.448 45.455 0.00 0.00 31.73 3.18
484 487 2.078452 CTGGAGGGCCTTCTTGGAA 58.922 57.895 14.33 0.00 38.35 3.53
491 494 3.127533 CCTTCTTGGAAGCGCGGG 61.128 66.667 8.83 0.00 38.35 6.13
528 531 1.718396 TCACATCTTGCAAGCTCTCG 58.282 50.000 21.99 9.75 0.00 4.04
551 554 3.640967 CTCTACCTCTGCTTTGCTATCCT 59.359 47.826 0.00 0.00 0.00 3.24
552 555 2.998316 ACCTCTGCTTTGCTATCCTC 57.002 50.000 0.00 0.00 0.00 3.71
611 614 4.800914 GCAGGTAGCTTCTGAACTCTGAAA 60.801 45.833 17.54 0.00 41.15 2.69
652 655 1.953559 TCATATTTCAGGCGTCAGGC 58.046 50.000 0.00 0.00 44.19 4.85
674 677 4.803426 CCTGACGCACCGCCTCTC 62.803 72.222 0.00 0.00 0.00 3.20
677 680 4.719369 GACGCACCGCCTCTCGTT 62.719 66.667 0.00 0.00 35.12 3.85
678 681 4.719369 ACGCACCGCCTCTCGTTC 62.719 66.667 0.00 0.00 36.19 3.95
681 684 4.452733 CACCGCCTCTCGTTCCCC 62.453 72.222 0.00 0.00 36.19 4.81
683 686 4.452733 CCGCCTCTCGTTCCCCAC 62.453 72.222 0.00 0.00 36.19 4.61
684 687 4.452733 CGCCTCTCGTTCCCCACC 62.453 72.222 0.00 0.00 0.00 4.61
685 688 4.452733 GCCTCTCGTTCCCCACCG 62.453 72.222 0.00 0.00 0.00 4.94
686 689 4.452733 CCTCTCGTTCCCCACCGC 62.453 72.222 0.00 0.00 0.00 5.68
687 690 4.452733 CTCTCGTTCCCCACCGCC 62.453 72.222 0.00 0.00 0.00 6.13
689 692 4.452733 CTCGTTCCCCACCGCCTC 62.453 72.222 0.00 0.00 0.00 4.70
805 1110 3.419759 CGCGGTTTCTTCACCCGG 61.420 66.667 0.00 0.00 41.96 5.73
809 1114 2.322830 GGTTTCTTCACCCGGTCGC 61.323 63.158 0.00 0.00 0.00 5.19
827 1132 3.151022 CCCGCTCAGGTCTCTCCC 61.151 72.222 0.00 0.00 38.74 4.30
958 1288 2.507102 CTCGGCTAGTGTGCACCG 60.507 66.667 15.69 9.80 46.97 4.94
969 1299 1.077716 GTGCACCGCCTTCCCTAAT 60.078 57.895 5.22 0.00 0.00 1.73
1000 1330 2.277373 CCTCGTAGTCGCACGCTC 60.277 66.667 0.00 0.00 41.67 5.03
1011 1341 2.887568 CACGCTCCCGCATCTGAC 60.888 66.667 0.00 0.00 38.22 3.51
1021 1351 3.842923 CATCTGACGGGCGCTCCT 61.843 66.667 7.64 0.00 0.00 3.69
1102 1435 1.306642 CGACCACTACGAGGTGCTCT 61.307 60.000 0.00 0.00 40.09 4.09
1284 1617 2.920912 TCCCTCCGCCGTCAGTTT 60.921 61.111 0.00 0.00 0.00 2.66
1479 1818 2.763881 GTCAAGCGCGAACTCGAC 59.236 61.111 12.10 0.00 43.02 4.20
1503 1842 0.392706 TCTTCGCTGCCAAGAAGTCA 59.607 50.000 7.25 0.00 43.07 3.41
1542 1881 2.014857 TCGACTCCGGTAATGTCTCAG 58.985 52.381 0.00 0.00 36.24 3.35
1611 1959 0.040958 CGCTGTGCTCTTGTTTCACC 60.041 55.000 0.00 0.00 0.00 4.02
1635 1984 2.783122 ATTGCTGCCTGCCTCTTGCT 62.783 55.000 0.00 0.00 42.00 3.91
1642 1991 0.528684 CCTGCCTCTTGCTAGCGTAC 60.529 60.000 10.77 0.00 42.00 3.67
1647 1996 2.674177 GCCTCTTGCTAGCGTACTTGAA 60.674 50.000 10.77 0.00 36.87 2.69
1649 1998 2.924290 CTCTTGCTAGCGTACTTGAACC 59.076 50.000 10.77 0.00 0.00 3.62
1693 2054 1.835494 TCCAGCTAGCGTACTTCTGT 58.165 50.000 9.55 0.00 0.00 3.41
1698 2059 5.238868 TCCAGCTAGCGTACTTCTGTATTAG 59.761 44.000 9.55 0.00 0.00 1.73
1704 2065 8.505625 GCTAGCGTACTTCTGTATTAGTATTCT 58.494 37.037 0.00 0.00 0.00 2.40
1705 2066 9.814507 CTAGCGTACTTCTGTATTAGTATTCTG 57.185 37.037 0.00 0.00 0.00 3.02
1708 2069 7.649973 CGTACTTCTGTATTAGTATTCTGCCT 58.350 38.462 0.00 0.00 0.00 4.75
1709 2070 7.804129 CGTACTTCTGTATTAGTATTCTGCCTC 59.196 40.741 0.00 0.00 0.00 4.70
1710 2071 7.661536 ACTTCTGTATTAGTATTCTGCCTCA 57.338 36.000 0.00 0.00 0.00 3.86
1713 2074 7.839680 TCTGTATTAGTATTCTGCCTCATCA 57.160 36.000 0.00 0.00 0.00 3.07
1728 2089 5.479724 TGCCTCATCATGGTTTTGTAATCAA 59.520 36.000 0.00 0.00 0.00 2.57
1752 2113 2.347731 CCCCGAAGTTGAGCTTTAGAC 58.652 52.381 0.00 0.00 37.59 2.59
1753 2114 2.028020 CCCCGAAGTTGAGCTTTAGACT 60.028 50.000 0.00 0.00 37.59 3.24
1754 2115 3.557264 CCCCGAAGTTGAGCTTTAGACTT 60.557 47.826 0.00 0.00 37.59 3.01
1755 2116 4.065789 CCCGAAGTTGAGCTTTAGACTTT 58.934 43.478 0.00 0.00 37.59 2.66
1756 2117 5.235516 CCCGAAGTTGAGCTTTAGACTTTA 58.764 41.667 0.00 0.00 37.59 1.85
1757 2118 5.348997 CCCGAAGTTGAGCTTTAGACTTTAG 59.651 44.000 0.00 0.00 37.59 1.85
1758 2119 6.157211 CCGAAGTTGAGCTTTAGACTTTAGA 58.843 40.000 0.00 0.00 37.59 2.10
1801 2164 1.846007 AATGATGCCCCTAAAACGCA 58.154 45.000 0.00 0.00 36.84 5.24
1832 2195 8.915036 TCTGAATTAGTATTACTGAAGAGGGAC 58.085 37.037 6.60 0.00 0.00 4.46
1843 2223 0.178990 AAGAGGGACAGGGTTTGCAC 60.179 55.000 0.00 0.00 0.00 4.57
1849 2229 2.303175 GGACAGGGTTTGCACTTGTAA 58.697 47.619 0.00 0.00 0.00 2.41
1872 2252 0.843309 TGCAGAGGAAGGTGGAACAA 59.157 50.000 0.00 0.00 44.16 2.83
1876 2256 3.629398 GCAGAGGAAGGTGGAACAATATG 59.371 47.826 0.00 0.00 44.16 1.78
2009 2599 6.718454 AGAGTAATATTCCCCAGAAATGCATG 59.282 38.462 0.00 0.00 35.09 4.06
2010 2600 6.613699 AGTAATATTCCCCAGAAATGCATGA 58.386 36.000 0.00 0.00 35.09 3.07
2011 2601 7.068702 AGTAATATTCCCCAGAAATGCATGAA 58.931 34.615 0.00 0.00 35.09 2.57
2014 2604 2.449464 TCCCCAGAAATGCATGAACAG 58.551 47.619 0.00 0.00 0.00 3.16
2064 2735 7.129457 AGGTTATGCAAGAGATCTGTTGATA 57.871 36.000 30.89 21.64 36.09 2.15
2104 2779 5.242393 GGTACTACTACTGACCACAACTTGA 59.758 44.000 0.00 0.00 31.89 3.02
2108 2783 7.376615 ACTACTACTGACCACAACTTGATTAC 58.623 38.462 0.00 0.00 0.00 1.89
2143 2818 3.209410 CACATGGAGATAAGAAGGGTGC 58.791 50.000 0.00 0.00 0.00 5.01
2434 3112 7.981789 TGGTAGATCTTGAACTAGCACATAAAG 59.018 37.037 13.26 0.00 40.52 1.85
2444 3122 5.174395 ACTAGCACATAAAGTTGAGCTCAG 58.826 41.667 17.43 5.91 41.67 3.35
2453 3131 3.229276 AGTTGAGCTCAGTTCAGATCG 57.771 47.619 17.43 0.00 30.95 3.69
2456 3134 1.474478 TGAGCTCAGTTCAGATCGACC 59.526 52.381 13.74 0.00 30.95 4.79
2513 3371 4.195416 TGTTTTATCATGCATGGCGTCTA 58.805 39.130 25.97 6.40 0.00 2.59
2807 3666 3.578688 GACAAGCAACATTGATGGAACC 58.421 45.455 0.00 0.00 34.20 3.62
2876 3760 5.241728 GGTACTTGCTTTGGTTCTTCTTCAT 59.758 40.000 0.00 0.00 0.00 2.57
3130 4027 2.038557 ACCGCAAGTTACAGAGGACATT 59.961 45.455 4.87 0.00 0.00 2.71
3232 4129 9.765795 GGTATTTTGCATCTTAGATACAGTAGT 57.234 33.333 0.00 0.00 0.00 2.73
3238 4135 8.747538 TGCATCTTAGATACAGTAGTAGAACA 57.252 34.615 0.00 0.00 32.86 3.18
3279 4176 1.472878 GAAAGGGAAACGGAGCCATTC 59.527 52.381 0.00 0.00 0.00 2.67
3326 4224 1.066002 CACACTTGTGCTGGTGAAAGG 59.934 52.381 0.10 0.00 39.39 3.11
3327 4225 0.670162 CACTTGTGCTGGTGAAAGGG 59.330 55.000 0.00 0.00 35.69 3.95
3328 4226 0.550914 ACTTGTGCTGGTGAAAGGGA 59.449 50.000 0.00 0.00 0.00 4.20
3329 4227 1.242076 CTTGTGCTGGTGAAAGGGAG 58.758 55.000 0.00 0.00 0.00 4.30
3337 4235 3.444034 GCTGGTGAAAGGGAGTATTTTCC 59.556 47.826 0.00 0.00 33.43 3.13
3352 4250 2.879103 TTTCCTAGCCCACTGAAAGG 57.121 50.000 0.00 0.00 39.30 3.11
3357 4255 2.954611 GCCCACTGAAAGGCGAAC 59.045 61.111 0.00 0.00 39.87 3.95
3359 4257 1.452145 GCCCACTGAAAGGCGAACAA 61.452 55.000 0.00 0.00 39.87 2.83
3360 4258 0.593128 CCCACTGAAAGGCGAACAAG 59.407 55.000 0.00 0.00 39.30 3.16
3361 4259 1.308998 CCACTGAAAGGCGAACAAGT 58.691 50.000 0.00 0.00 39.30 3.16
3362 4260 2.489971 CCACTGAAAGGCGAACAAGTA 58.510 47.619 0.00 0.00 39.30 2.24
3364 4262 3.502211 CCACTGAAAGGCGAACAAGTATT 59.498 43.478 0.00 0.00 39.30 1.89
3365 4263 4.693566 CCACTGAAAGGCGAACAAGTATTA 59.306 41.667 0.00 0.00 39.30 0.98
3366 4264 5.390567 CCACTGAAAGGCGAACAAGTATTAC 60.391 44.000 0.00 0.00 39.30 1.89
3367 4265 4.694037 ACTGAAAGGCGAACAAGTATTACC 59.306 41.667 0.00 0.00 39.30 2.85
3368 4266 4.901868 TGAAAGGCGAACAAGTATTACCT 58.098 39.130 0.00 0.00 0.00 3.08
3369 4267 4.933400 TGAAAGGCGAACAAGTATTACCTC 59.067 41.667 0.00 0.00 0.00 3.85
3370 4268 3.538634 AGGCGAACAAGTATTACCTCC 57.461 47.619 0.00 0.00 0.00 4.30
3371 4269 2.159142 AGGCGAACAAGTATTACCTCCG 60.159 50.000 0.00 0.00 0.00 4.63
3372 4270 2.417787 GGCGAACAAGTATTACCTCCGT 60.418 50.000 0.00 0.00 0.00 4.69
3373 4271 3.181487 GGCGAACAAGTATTACCTCCGTA 60.181 47.826 0.00 0.00 0.00 4.02
3374 4272 3.793492 GCGAACAAGTATTACCTCCGTAC 59.207 47.826 0.00 0.00 0.00 3.67
3375 4273 4.439289 GCGAACAAGTATTACCTCCGTACT 60.439 45.833 0.00 0.00 0.00 2.73
3376 4274 5.032863 CGAACAAGTATTACCTCCGTACTG 58.967 45.833 0.00 0.00 0.00 2.74
3377 4275 5.163723 CGAACAAGTATTACCTCCGTACTGA 60.164 44.000 0.00 0.00 0.00 3.41
3378 4276 5.573337 ACAAGTATTACCTCCGTACTGAC 57.427 43.478 0.00 0.00 0.00 3.51
3379 4277 5.012239 ACAAGTATTACCTCCGTACTGACA 58.988 41.667 0.00 0.00 0.00 3.58
3380 4278 5.105997 ACAAGTATTACCTCCGTACTGACAC 60.106 44.000 0.00 0.00 0.00 3.67
3381 4279 4.592942 AGTATTACCTCCGTACTGACACA 58.407 43.478 0.00 0.00 0.00 3.72
3382 4280 4.639310 AGTATTACCTCCGTACTGACACAG 59.361 45.833 0.00 0.00 37.52 3.66
3383 4281 2.865119 TACCTCCGTACTGACACAGA 57.135 50.000 5.76 0.00 35.18 3.41
3384 4282 1.535833 ACCTCCGTACTGACACAGAG 58.464 55.000 5.76 0.00 35.18 3.35
3385 4283 0.811915 CCTCCGTACTGACACAGAGG 59.188 60.000 5.76 6.17 35.18 3.69
3386 4284 1.535833 CTCCGTACTGACACAGAGGT 58.464 55.000 5.76 0.00 35.18 3.85
3387 4285 2.617276 CCTCCGTACTGACACAGAGGTA 60.617 54.545 5.76 0.00 34.50 3.08
3388 4286 2.678836 CTCCGTACTGACACAGAGGTAG 59.321 54.545 5.76 3.27 35.18 3.18
3444 4342 0.322816 TGCTGATGGAAGGCAAGTCC 60.323 55.000 0.00 0.00 35.55 3.85
3479 4377 9.761504 TTGTTTACATGATTGATTGATTGTTGT 57.238 25.926 0.00 0.00 0.00 3.32
3517 4415 4.933505 TGTTTTTGAGTGAATGCCATCA 57.066 36.364 0.00 0.00 0.00 3.07
3557 4459 3.386768 AGCACACTTACATCGTTCACT 57.613 42.857 0.00 0.00 0.00 3.41
3558 4460 3.059884 AGCACACTTACATCGTTCACTG 58.940 45.455 0.00 0.00 0.00 3.66
3564 4466 7.200455 CACACTTACATCGTTCACTGGATATA 58.800 38.462 0.00 0.00 0.00 0.86
3565 4467 7.867909 CACACTTACATCGTTCACTGGATATAT 59.132 37.037 0.00 0.00 0.00 0.86
3582 4484 8.130671 TGGATATATAGTAAGAAAAGACGGGG 57.869 38.462 0.00 0.00 0.00 5.73
3593 4495 1.329256 AAGACGGGGGATCATCTACG 58.671 55.000 0.00 0.00 0.00 3.51
3617 4519 8.064222 ACGCAATTACAAGATAAATGATTCTCG 58.936 33.333 0.00 0.00 0.00 4.04
3634 4536 7.252708 TGATTCTCGTAACTATGTTTCGCTAA 58.747 34.615 4.95 3.07 0.00 3.09
3643 4545 4.870426 ACTATGTTTCGCTAACTCATGTGG 59.130 41.667 0.00 0.00 37.64 4.17
3644 4546 3.394674 TGTTTCGCTAACTCATGTGGA 57.605 42.857 0.00 0.00 37.64 4.02
3646 4548 4.323417 TGTTTCGCTAACTCATGTGGAAT 58.677 39.130 0.00 0.00 37.64 3.01
3661 4563 0.555769 GGAATACCATTGGCCTCCCA 59.444 55.000 3.32 0.00 36.24 4.37
3671 4573 1.610673 GGCCTCCCAGAGACAGTGA 60.611 63.158 0.00 0.00 0.00 3.41
3701 4603 6.540438 TGAACTATTCCTATTTCCGTCACT 57.460 37.500 0.00 0.00 0.00 3.41
3716 4618 6.709018 TCCGTCACTAGATCAATACAATCA 57.291 37.500 0.00 0.00 0.00 2.57
3727 4629 8.743085 AGATCAATACAATCAGCATAAACTGT 57.257 30.769 0.00 0.00 38.84 3.55
3733 4635 9.613428 AATACAATCAGCATAAACTGTAGCTTA 57.387 29.630 0.00 0.00 38.84 3.09
3746 4648 5.186198 ACTGTAGCTTATTCATTCCACCAC 58.814 41.667 0.00 0.00 0.00 4.16
3778 4680 3.314553 CTTTGCAAGCTTCAATCACCTG 58.685 45.455 0.00 0.00 0.00 4.00
3779 4681 0.599558 TGCAAGCTTCAATCACCTGC 59.400 50.000 0.00 0.00 0.00 4.85
3784 4686 2.309613 AGCTTCAATCACCTGCAAACA 58.690 42.857 0.00 0.00 0.00 2.83
3785 4687 2.694628 AGCTTCAATCACCTGCAAACAA 59.305 40.909 0.00 0.00 0.00 2.83
3786 4688 2.796593 GCTTCAATCACCTGCAAACAAC 59.203 45.455 0.00 0.00 0.00 3.32
3787 4689 3.491447 GCTTCAATCACCTGCAAACAACT 60.491 43.478 0.00 0.00 0.00 3.16
3788 4690 4.685924 CTTCAATCACCTGCAAACAACTT 58.314 39.130 0.00 0.00 0.00 2.66
3789 4691 4.305989 TCAATCACCTGCAAACAACTTC 57.694 40.909 0.00 0.00 0.00 3.01
3790 4692 3.698539 TCAATCACCTGCAAACAACTTCA 59.301 39.130 0.00 0.00 0.00 3.02
3791 4693 4.159321 TCAATCACCTGCAAACAACTTCAA 59.841 37.500 0.00 0.00 0.00 2.69
3792 4694 4.942761 ATCACCTGCAAACAACTTCAAT 57.057 36.364 0.00 0.00 0.00 2.57
3793 4695 4.305989 TCACCTGCAAACAACTTCAATC 57.694 40.909 0.00 0.00 0.00 2.67
3794 4696 3.698539 TCACCTGCAAACAACTTCAATCA 59.301 39.130 0.00 0.00 0.00 2.57
3795 4697 3.798337 CACCTGCAAACAACTTCAATCAC 59.202 43.478 0.00 0.00 0.00 3.06
3796 4698 3.181476 ACCTGCAAACAACTTCAATCACC 60.181 43.478 0.00 0.00 0.00 4.02
3797 4699 3.068590 CCTGCAAACAACTTCAATCACCT 59.931 43.478 0.00 0.00 0.00 4.00
3798 4700 4.044336 TGCAAACAACTTCAATCACCTG 57.956 40.909 0.00 0.00 0.00 4.00
3799 4701 2.796593 GCAAACAACTTCAATCACCTGC 59.203 45.455 0.00 0.00 0.00 4.85
3800 4702 3.737663 GCAAACAACTTCAATCACCTGCA 60.738 43.478 0.00 0.00 0.00 4.41
3801 4703 4.431809 CAAACAACTTCAATCACCTGCAA 58.568 39.130 0.00 0.00 0.00 4.08
3802 4704 4.734398 AACAACTTCAATCACCTGCAAA 57.266 36.364 0.00 0.00 0.00 3.68
3803 4705 4.045636 ACAACTTCAATCACCTGCAAAC 57.954 40.909 0.00 0.00 0.00 2.93
3817 4719 3.168963 CTGCAAACAATCAGATTCAGCG 58.831 45.455 0.00 0.00 32.26 5.18
3822 4724 3.170791 ACAATCAGATTCAGCGACGAT 57.829 42.857 0.00 0.00 0.00 3.73
3835 4737 1.934589 CGACGATTTGGTGATAGCCA 58.065 50.000 0.00 0.00 36.62 4.75
3885 4790 0.462581 GCCAGTGCTTCCATCATCGA 60.463 55.000 0.00 0.00 33.53 3.59
3899 4804 2.437895 TCGAGGCCGATGACGAGT 60.438 61.111 0.00 0.00 40.30 4.18
3900 4805 1.153309 TCGAGGCCGATGACGAGTA 60.153 57.895 0.00 0.00 40.30 2.59
3901 4806 0.534427 TCGAGGCCGATGACGAGTAT 60.534 55.000 0.00 0.00 40.30 2.12
3902 4807 0.386100 CGAGGCCGATGACGAGTATG 60.386 60.000 0.00 0.00 42.66 2.39
3903 4808 0.039074 GAGGCCGATGACGAGTATGG 60.039 60.000 0.00 0.00 42.66 2.74
3904 4809 0.467474 AGGCCGATGACGAGTATGGA 60.467 55.000 0.00 0.00 42.66 3.41
3905 4810 0.387929 GGCCGATGACGAGTATGGAA 59.612 55.000 0.00 0.00 42.66 3.53
3906 4811 1.488527 GCCGATGACGAGTATGGAAC 58.511 55.000 0.00 0.00 42.66 3.62
3907 4812 1.202371 GCCGATGACGAGTATGGAACA 60.202 52.381 0.00 0.00 43.03 3.18
3908 4813 2.545952 GCCGATGACGAGTATGGAACAT 60.546 50.000 0.00 0.00 42.96 2.71
3909 4814 3.305131 GCCGATGACGAGTATGGAACATA 60.305 47.826 0.00 0.00 42.96 2.29
3910 4815 4.476862 CCGATGACGAGTATGGAACATAG 58.523 47.826 0.00 0.00 42.96 2.23
3911 4816 4.476862 CGATGACGAGTATGGAACATAGG 58.523 47.826 0.00 0.00 42.96 2.57
3912 4817 5.141097 CGATGACGAGTATGGAACATAGGC 61.141 50.000 0.00 0.00 42.96 3.93
3920 4825 0.104120 TGGAACATAGGCCGATGACG 59.896 55.000 29.96 6.49 39.43 4.35
3924 4829 1.977056 ACATAGGCCGATGACGAGTA 58.023 50.000 29.96 0.00 42.66 2.59
3971 4876 2.897436 GGAAATTGCCCATCTTGCTTC 58.103 47.619 0.00 0.00 0.00 3.86
3972 4877 2.419159 GGAAATTGCCCATCTTGCTTCC 60.419 50.000 0.00 0.00 0.00 3.46
3973 4878 1.941377 AATTGCCCATCTTGCTTCCA 58.059 45.000 0.00 0.00 0.00 3.53
3974 4879 2.170012 ATTGCCCATCTTGCTTCCAT 57.830 45.000 0.00 0.00 0.00 3.41
3975 4880 1.477553 TTGCCCATCTTGCTTCCATC 58.522 50.000 0.00 0.00 0.00 3.51
3976 4881 0.332293 TGCCCATCTTGCTTCCATCA 59.668 50.000 0.00 0.00 0.00 3.07
3977 4882 1.063492 TGCCCATCTTGCTTCCATCAT 60.063 47.619 0.00 0.00 0.00 2.45
3978 4883 1.612463 GCCCATCTTGCTTCCATCATC 59.388 52.381 0.00 0.00 0.00 2.92
3979 4884 1.878088 CCCATCTTGCTTCCATCATCG 59.122 52.381 0.00 0.00 0.00 3.84
3980 4885 2.486013 CCCATCTTGCTTCCATCATCGA 60.486 50.000 0.00 0.00 0.00 3.59
3981 4886 2.806818 CCATCTTGCTTCCATCATCGAG 59.193 50.000 0.00 0.00 0.00 4.04
3982 4887 2.609427 TCTTGCTTCCATCATCGAGG 57.391 50.000 0.00 0.00 0.00 4.63
3983 4888 0.942962 CTTGCTTCCATCATCGAGGC 59.057 55.000 0.00 0.00 33.24 4.70
3984 4889 0.464373 TTGCTTCCATCATCGAGGCC 60.464 55.000 0.00 0.00 31.69 5.19
3985 4890 1.958205 GCTTCCATCATCGAGGCCG 60.958 63.158 0.00 0.00 37.07 6.13
3994 4899 2.437895 TCGAGGCCGATGACGAGT 60.438 61.111 0.00 0.00 40.30 4.18
3995 4900 1.153309 TCGAGGCCGATGACGAGTA 60.153 57.895 0.00 0.00 40.30 2.59
3996 4901 0.534427 TCGAGGCCGATGACGAGTAT 60.534 55.000 0.00 0.00 40.30 2.12
3997 4902 0.386100 CGAGGCCGATGACGAGTATG 60.386 60.000 0.00 0.00 42.66 2.39
3998 4903 0.039074 GAGGCCGATGACGAGTATGG 60.039 60.000 0.00 0.00 42.66 2.74
3999 4904 0.467474 AGGCCGATGACGAGTATGGA 60.467 55.000 0.00 0.00 42.66 3.41
4000 4905 0.387929 GGCCGATGACGAGTATGGAA 59.612 55.000 0.00 0.00 42.66 3.53
4001 4906 1.488527 GCCGATGACGAGTATGGAAC 58.511 55.000 0.00 0.00 42.66 3.62
4002 4907 1.202371 GCCGATGACGAGTATGGAACA 60.202 52.381 0.00 0.00 43.03 3.18
4003 4908 2.545952 GCCGATGACGAGTATGGAACAT 60.546 50.000 0.00 0.00 42.96 2.71
4004 4909 3.305131 GCCGATGACGAGTATGGAACATA 60.305 47.826 0.00 0.00 42.96 2.29
4005 4910 4.476862 CCGATGACGAGTATGGAACATAG 58.523 47.826 0.00 0.00 42.96 2.23
4006 4911 4.476862 CGATGACGAGTATGGAACATAGG 58.523 47.826 0.00 0.00 42.96 2.57
4007 4912 5.141097 CGATGACGAGTATGGAACATAGGC 61.141 50.000 0.00 0.00 42.96 3.93
4015 4920 0.104120 TGGAACATAGGCCGATGACG 59.896 55.000 29.96 6.49 39.43 4.35
4016 4921 0.387929 GGAACATAGGCCGATGACGA 59.612 55.000 29.96 0.00 42.66 4.20
4017 4922 1.603172 GGAACATAGGCCGATGACGAG 60.603 57.143 29.96 5.74 42.66 4.18
4018 4923 1.067212 GAACATAGGCCGATGACGAGT 59.933 52.381 29.96 6.47 42.66 4.18
4019 4924 1.977056 ACATAGGCCGATGACGAGTA 58.023 50.000 29.96 0.00 42.66 2.59
4020 4925 2.515854 ACATAGGCCGATGACGAGTAT 58.484 47.619 29.96 4.99 42.66 2.12
4021 4926 2.229062 ACATAGGCCGATGACGAGTATG 59.771 50.000 29.96 15.52 42.66 2.39
4022 4927 1.244816 TAGGCCGATGACGAGTATGG 58.755 55.000 0.00 0.00 42.66 2.74
4023 4928 0.467474 AGGCCGATGACGAGTATGGA 60.467 55.000 0.00 0.00 42.66 3.41
4024 4929 0.387929 GGCCGATGACGAGTATGGAA 59.612 55.000 0.00 0.00 42.66 3.53
4025 4930 1.488527 GCCGATGACGAGTATGGAAC 58.511 55.000 0.00 0.00 42.66 3.62
4026 4931 1.202371 GCCGATGACGAGTATGGAACA 60.202 52.381 0.00 0.00 43.03 3.18
4027 4932 2.545952 GCCGATGACGAGTATGGAACAT 60.546 50.000 0.00 0.00 42.96 2.71
4028 4933 3.305131 GCCGATGACGAGTATGGAACATA 60.305 47.826 0.00 0.00 42.96 2.29
4029 4934 4.794981 GCCGATGACGAGTATGGAACATAA 60.795 45.833 0.00 0.00 42.96 1.90
4030 4935 5.286438 CCGATGACGAGTATGGAACATAAA 58.714 41.667 0.00 0.00 42.96 1.40
4031 4936 5.751509 CCGATGACGAGTATGGAACATAAAA 59.248 40.000 0.00 0.00 42.96 1.52
4032 4937 6.256975 CCGATGACGAGTATGGAACATAAAAA 59.743 38.462 0.00 0.00 42.96 1.94
4033 4938 7.117454 CGATGACGAGTATGGAACATAAAAAC 58.883 38.462 0.00 0.00 42.96 2.43
4034 4939 7.201487 CGATGACGAGTATGGAACATAAAAACA 60.201 37.037 0.00 0.00 42.96 2.83
4043 4948 4.689812 TGGAACATAAAAACATGCACATGC 59.310 37.500 10.50 0.00 42.39 4.06
4054 4959 2.758497 GCACATGCAGGGAAATTGC 58.242 52.632 2.31 0.00 41.59 3.56
4055 4960 0.741927 GCACATGCAGGGAAATTGCC 60.742 55.000 2.31 0.00 40.81 4.52
4097 5002 3.391382 CGTCGCCCCTTCTCCCTT 61.391 66.667 0.00 0.00 0.00 3.95
4122 5032 4.092821 TCAAAATGAAACGAGGCATCTACG 59.907 41.667 0.00 0.00 0.00 3.51
4137 5047 7.758495 AGGCATCTACGTTTAATTTAACTTGG 58.242 34.615 0.00 0.00 0.00 3.61
4140 5050 7.007995 GCATCTACGTTTAATTTAACTTGGCAC 59.992 37.037 0.00 0.00 0.00 5.01
4148 5058 5.957842 AATTTAACTTGGCACGAATCTGA 57.042 34.783 0.00 0.00 0.00 3.27
4152 5062 4.425577 AACTTGGCACGAATCTGATTTC 57.574 40.909 4.11 0.00 0.00 2.17
4156 5067 3.608796 TGGCACGAATCTGATTTCATCA 58.391 40.909 4.11 0.00 37.76 3.07
4159 5070 4.974275 GGCACGAATCTGATTTCATCAATG 59.026 41.667 4.11 0.00 39.11 2.82
4165 5076 8.393366 ACGAATCTGATTTCATCAATGTAACTG 58.607 33.333 4.11 0.00 39.11 3.16
4166 5077 8.606602 CGAATCTGATTTCATCAATGTAACTGA 58.393 33.333 4.11 0.00 39.11 3.41
4189 5100 9.645059 CTGATTCTCTTGTGTTATTACTCTGAA 57.355 33.333 0.00 0.00 0.00 3.02
4190 5101 9.424319 TGATTCTCTTGTGTTATTACTCTGAAC 57.576 33.333 0.00 0.00 0.00 3.18
4191 5102 9.646427 GATTCTCTTGTGTTATTACTCTGAACT 57.354 33.333 0.00 0.00 0.00 3.01
4192 5103 8.818141 TTCTCTTGTGTTATTACTCTGAACTG 57.182 34.615 0.00 0.00 0.00 3.16
4193 5104 7.952671 TCTCTTGTGTTATTACTCTGAACTGT 58.047 34.615 0.00 0.00 0.00 3.55
4194 5105 7.867909 TCTCTTGTGTTATTACTCTGAACTGTG 59.132 37.037 0.00 0.00 0.00 3.66
4195 5106 7.722363 TCTTGTGTTATTACTCTGAACTGTGA 58.278 34.615 0.00 0.00 0.00 3.58
4196 5107 8.367911 TCTTGTGTTATTACTCTGAACTGTGAT 58.632 33.333 0.00 0.00 0.00 3.06
4197 5108 7.889589 TGTGTTATTACTCTGAACTGTGATG 57.110 36.000 0.00 0.00 0.00 3.07
4198 5109 7.666623 TGTGTTATTACTCTGAACTGTGATGA 58.333 34.615 0.00 0.00 0.00 2.92
4199 5110 8.147704 TGTGTTATTACTCTGAACTGTGATGAA 58.852 33.333 0.00 0.00 0.00 2.57
4200 5111 8.651588 GTGTTATTACTCTGAACTGTGATGAAG 58.348 37.037 0.00 0.00 0.00 3.02
4201 5112 8.367911 TGTTATTACTCTGAACTGTGATGAAGT 58.632 33.333 0.00 0.00 0.00 3.01
4202 5113 9.209175 GTTATTACTCTGAACTGTGATGAAGTT 57.791 33.333 0.00 0.00 40.54 2.66
4203 5114 9.778741 TTATTACTCTGAACTGTGATGAAGTTT 57.221 29.630 0.00 0.00 37.98 2.66
4204 5115 5.998454 ACTCTGAACTGTGATGAAGTTTG 57.002 39.130 0.00 0.00 37.98 2.93
4205 5116 5.431765 ACTCTGAACTGTGATGAAGTTTGT 58.568 37.500 0.00 0.00 37.98 2.83
4206 5117 5.295292 ACTCTGAACTGTGATGAAGTTTGTG 59.705 40.000 0.00 0.00 37.98 3.33
4207 5118 4.035558 TCTGAACTGTGATGAAGTTTGTGC 59.964 41.667 0.00 0.00 37.98 4.57
4208 5119 3.693578 TGAACTGTGATGAAGTTTGTGCA 59.306 39.130 0.00 0.00 37.98 4.57
4209 5120 4.338964 TGAACTGTGATGAAGTTTGTGCAT 59.661 37.500 0.00 0.00 37.98 3.96
4210 5121 5.530543 TGAACTGTGATGAAGTTTGTGCATA 59.469 36.000 0.00 0.00 37.98 3.14
4211 5122 5.618056 ACTGTGATGAAGTTTGTGCATAG 57.382 39.130 0.00 0.00 0.00 2.23
4212 5123 4.456911 ACTGTGATGAAGTTTGTGCATAGG 59.543 41.667 0.00 0.00 0.00 2.57
4213 5124 3.758023 TGTGATGAAGTTTGTGCATAGGG 59.242 43.478 0.00 0.00 0.00 3.53
4214 5125 4.009675 GTGATGAAGTTTGTGCATAGGGA 58.990 43.478 0.00 0.00 0.00 4.20
4215 5126 4.009675 TGATGAAGTTTGTGCATAGGGAC 58.990 43.478 0.00 0.00 35.66 4.46
4216 5127 2.422597 TGAAGTTTGTGCATAGGGACG 58.577 47.619 0.00 0.00 38.35 4.79
4217 5128 1.737793 GAAGTTTGTGCATAGGGACGG 59.262 52.381 0.00 0.00 38.35 4.79
4218 5129 0.981183 AGTTTGTGCATAGGGACGGA 59.019 50.000 0.00 0.00 38.35 4.69
4219 5130 1.349688 AGTTTGTGCATAGGGACGGAA 59.650 47.619 0.00 0.00 38.35 4.30
4220 5131 1.467342 GTTTGTGCATAGGGACGGAAC 59.533 52.381 0.00 0.00 38.35 3.62
4221 5132 0.687920 TTGTGCATAGGGACGGAACA 59.312 50.000 0.00 0.00 38.35 3.18
4222 5133 0.687920 TGTGCATAGGGACGGAACAA 59.312 50.000 0.00 0.00 38.35 2.83
4223 5134 1.072489 TGTGCATAGGGACGGAACAAA 59.928 47.619 0.00 0.00 38.35 2.83
4224 5135 2.290641 TGTGCATAGGGACGGAACAAAT 60.291 45.455 0.00 0.00 38.35 2.32
4225 5136 3.055021 TGTGCATAGGGACGGAACAAATA 60.055 43.478 0.00 0.00 38.35 1.40
4226 5137 3.942748 GTGCATAGGGACGGAACAAATAA 59.057 43.478 0.00 0.00 0.00 1.40
4227 5138 3.942748 TGCATAGGGACGGAACAAATAAC 59.057 43.478 0.00 0.00 0.00 1.89
4228 5139 4.196971 GCATAGGGACGGAACAAATAACT 58.803 43.478 0.00 0.00 0.00 2.24
4229 5140 4.638865 GCATAGGGACGGAACAAATAACTT 59.361 41.667 0.00 0.00 0.00 2.66
4230 5141 5.124936 GCATAGGGACGGAACAAATAACTTT 59.875 40.000 0.00 0.00 0.00 2.66
4231 5142 6.677187 GCATAGGGACGGAACAAATAACTTTC 60.677 42.308 0.00 0.00 0.00 2.62
4232 5143 4.981812 AGGGACGGAACAAATAACTTTCT 58.018 39.130 0.00 0.00 0.00 2.52
4233 5144 6.117975 AGGGACGGAACAAATAACTTTCTA 57.882 37.500 0.00 0.00 0.00 2.10
4234 5145 6.718294 AGGGACGGAACAAATAACTTTCTAT 58.282 36.000 0.00 0.00 0.00 1.98
4235 5146 7.173032 AGGGACGGAACAAATAACTTTCTATT 58.827 34.615 0.00 0.00 0.00 1.73
4236 5147 7.336176 AGGGACGGAACAAATAACTTTCTATTC 59.664 37.037 0.00 0.00 0.00 1.75
4237 5148 7.178074 GGACGGAACAAATAACTTTCTATTCG 58.822 38.462 0.00 0.00 0.00 3.34
4238 5149 7.148523 GGACGGAACAAATAACTTTCTATTCGT 60.149 37.037 0.00 0.00 0.00 3.85
4239 5150 8.091385 ACGGAACAAATAACTTTCTATTCGTT 57.909 30.769 0.00 0.00 0.00 3.85
4270 5181 2.422597 TGAAGTTTGTGCATAGGGACG 58.577 47.619 0.00 0.00 38.35 4.79
4279 5190 1.837439 TGCATAGGGACGGAACAGATT 59.163 47.619 0.00 0.00 0.00 2.40
4287 5198 3.055312 GGGACGGAACAGATTAACTTCCT 60.055 47.826 0.00 0.00 0.00 3.36
4299 5210 7.119262 ACAGATTAACTTCCTATTCGTTGTTGG 59.881 37.037 0.00 0.00 0.00 3.77
4300 5211 6.598064 AGATTAACTTCCTATTCGTTGTTGGG 59.402 38.462 0.00 0.00 0.00 4.12
4301 5212 3.067684 ACTTCCTATTCGTTGTTGGGG 57.932 47.619 0.00 0.00 0.00 4.96
4302 5213 2.290705 ACTTCCTATTCGTTGTTGGGGG 60.291 50.000 0.00 0.00 0.00 5.40
4303 5214 0.034863 TCCTATTCGTTGTTGGGGGC 60.035 55.000 0.00 0.00 0.00 5.80
4304 5215 1.373590 CCTATTCGTTGTTGGGGGCG 61.374 60.000 0.00 0.00 0.00 6.13
4305 5216 0.675522 CTATTCGTTGTTGGGGGCGT 60.676 55.000 0.00 0.00 0.00 5.68
4306 5217 0.674269 TATTCGTTGTTGGGGGCGTC 60.674 55.000 0.00 0.00 0.00 5.19
4307 5218 3.981609 TATTCGTTGTTGGGGGCGTCC 62.982 57.143 0.00 0.00 0.00 4.79
4308 5219 4.636435 CGTTGTTGGGGGCGTCCT 62.636 66.667 5.77 0.00 35.33 3.85
4309 5220 2.671963 GTTGTTGGGGGCGTCCTC 60.672 66.667 5.77 0.30 35.33 3.71
4310 5221 2.852075 TTGTTGGGGGCGTCCTCT 60.852 61.111 7.83 0.00 33.63 3.69
4311 5222 2.890766 TTGTTGGGGGCGTCCTCTC 61.891 63.158 7.83 0.29 33.63 3.20
4312 5223 4.097361 GTTGGGGGCGTCCTCTCC 62.097 72.222 7.83 0.00 33.63 3.71
4313 5224 4.332543 TTGGGGGCGTCCTCTCCT 62.333 66.667 7.83 0.00 33.63 3.69
4314 5225 3.864983 TTGGGGGCGTCCTCTCCTT 62.865 63.158 7.83 0.00 33.63 3.36
4315 5226 3.787001 GGGGGCGTCCTCTCCTTG 61.787 72.222 5.77 0.00 35.33 3.61
4316 5227 3.003763 GGGGCGTCCTCTCCTTGT 61.004 66.667 5.77 0.00 0.00 3.16
4317 5228 2.266055 GGGCGTCCTCTCCTTGTG 59.734 66.667 0.00 0.00 0.00 3.33
4318 5229 2.584391 GGGCGTCCTCTCCTTGTGT 61.584 63.158 0.00 0.00 0.00 3.72
4319 5230 1.079750 GGCGTCCTCTCCTTGTGTC 60.080 63.158 0.00 0.00 0.00 3.67
4320 5231 1.666011 GCGTCCTCTCCTTGTGTCA 59.334 57.895 0.00 0.00 0.00 3.58
4321 5232 0.667792 GCGTCCTCTCCTTGTGTCAC 60.668 60.000 0.00 0.00 0.00 3.67
4322 5233 0.962489 CGTCCTCTCCTTGTGTCACT 59.038 55.000 4.27 0.00 0.00 3.41
4323 5234 1.336332 CGTCCTCTCCTTGTGTCACTG 60.336 57.143 4.27 0.00 0.00 3.66
4324 5235 1.689273 GTCCTCTCCTTGTGTCACTGT 59.311 52.381 4.27 0.00 0.00 3.55
4325 5236 2.103263 GTCCTCTCCTTGTGTCACTGTT 59.897 50.000 4.27 0.00 0.00 3.16
4326 5237 2.365617 TCCTCTCCTTGTGTCACTGTTC 59.634 50.000 4.27 0.00 0.00 3.18
4327 5238 2.398498 CTCTCCTTGTGTCACTGTTCG 58.602 52.381 4.27 0.00 0.00 3.95
4328 5239 1.754803 TCTCCTTGTGTCACTGTTCGT 59.245 47.619 4.27 0.00 0.00 3.85
4329 5240 2.128035 CTCCTTGTGTCACTGTTCGTC 58.872 52.381 4.27 0.00 0.00 4.20
4330 5241 1.754803 TCCTTGTGTCACTGTTCGTCT 59.245 47.619 4.27 0.00 0.00 4.18
4331 5242 1.860950 CCTTGTGTCACTGTTCGTCTG 59.139 52.381 4.27 0.00 0.00 3.51
4332 5243 2.481276 CCTTGTGTCACTGTTCGTCTGA 60.481 50.000 4.27 0.00 0.00 3.27
4333 5244 3.384668 CTTGTGTCACTGTTCGTCTGAT 58.615 45.455 4.27 0.00 0.00 2.90
4334 5245 3.013276 TGTGTCACTGTTCGTCTGATC 57.987 47.619 4.27 0.00 0.00 2.92
4335 5246 2.288213 TGTGTCACTGTTCGTCTGATCC 60.288 50.000 4.27 0.00 0.00 3.36
4336 5247 1.960689 TGTCACTGTTCGTCTGATCCA 59.039 47.619 0.00 0.00 0.00 3.41
4337 5248 2.364002 TGTCACTGTTCGTCTGATCCAA 59.636 45.455 0.00 0.00 0.00 3.53
4338 5249 3.006859 TGTCACTGTTCGTCTGATCCAAT 59.993 43.478 0.00 0.00 0.00 3.16
4339 5250 4.219725 TGTCACTGTTCGTCTGATCCAATA 59.780 41.667 0.00 0.00 0.00 1.90
4340 5251 4.563184 GTCACTGTTCGTCTGATCCAATAC 59.437 45.833 0.00 0.00 0.00 1.89
4341 5252 3.865745 CACTGTTCGTCTGATCCAATACC 59.134 47.826 0.00 0.00 0.00 2.73
4342 5253 3.513912 ACTGTTCGTCTGATCCAATACCA 59.486 43.478 0.00 0.00 0.00 3.25
4343 5254 4.162320 ACTGTTCGTCTGATCCAATACCAT 59.838 41.667 0.00 0.00 0.00 3.55
4344 5255 4.441792 TGTTCGTCTGATCCAATACCATG 58.558 43.478 0.00 0.00 0.00 3.66
4345 5256 4.081142 TGTTCGTCTGATCCAATACCATGT 60.081 41.667 0.00 0.00 0.00 3.21
4346 5257 4.753516 TCGTCTGATCCAATACCATGTT 57.246 40.909 0.00 0.00 0.00 2.71
4347 5258 5.862678 TCGTCTGATCCAATACCATGTTA 57.137 39.130 0.00 0.00 0.00 2.41
4348 5259 6.419484 TCGTCTGATCCAATACCATGTTAT 57.581 37.500 0.00 0.00 0.00 1.89
4349 5260 6.826668 TCGTCTGATCCAATACCATGTTATT 58.173 36.000 0.00 0.00 0.00 1.40
4350 5261 6.705825 TCGTCTGATCCAATACCATGTTATTG 59.294 38.462 14.34 14.34 34.42 1.90
4364 5275 7.202526 ACCATGTTATTGGATAAAGATTTGCG 58.797 34.615 0.00 0.00 39.25 4.85
4365 5276 6.642131 CCATGTTATTGGATAAAGATTTGCGG 59.358 38.462 0.00 0.00 39.25 5.69
4366 5277 6.767524 TGTTATTGGATAAAGATTTGCGGT 57.232 33.333 0.00 0.00 0.00 5.68
4367 5278 6.559810 TGTTATTGGATAAAGATTTGCGGTG 58.440 36.000 0.00 0.00 0.00 4.94
4368 5279 6.151985 TGTTATTGGATAAAGATTTGCGGTGT 59.848 34.615 0.00 0.00 0.00 4.16
4369 5280 5.659440 ATTGGATAAAGATTTGCGGTGTT 57.341 34.783 0.00 0.00 0.00 3.32
4370 5281 4.433186 TGGATAAAGATTTGCGGTGTTG 57.567 40.909 0.00 0.00 0.00 3.33
4371 5282 3.823873 TGGATAAAGATTTGCGGTGTTGT 59.176 39.130 0.00 0.00 0.00 3.32
4372 5283 5.004448 TGGATAAAGATTTGCGGTGTTGTA 58.996 37.500 0.00 0.00 0.00 2.41
4373 5284 5.473846 TGGATAAAGATTTGCGGTGTTGTAA 59.526 36.000 0.00 0.00 0.00 2.41
4374 5285 6.027749 GGATAAAGATTTGCGGTGTTGTAAG 58.972 40.000 0.00 0.00 0.00 2.34
4375 5286 3.915437 AAGATTTGCGGTGTTGTAAGG 57.085 42.857 0.00 0.00 0.00 2.69
4376 5287 2.159382 AGATTTGCGGTGTTGTAAGGG 58.841 47.619 0.00 0.00 0.00 3.95
4377 5288 0.601057 ATTTGCGGTGTTGTAAGGGC 59.399 50.000 0.00 0.00 0.00 5.19
4378 5289 0.466555 TTTGCGGTGTTGTAAGGGCT 60.467 50.000 0.00 0.00 0.00 5.19
4379 5290 0.887387 TTGCGGTGTTGTAAGGGCTC 60.887 55.000 0.00 0.00 0.00 4.70
4380 5291 2.388232 GCGGTGTTGTAAGGGCTCG 61.388 63.158 0.00 0.00 0.00 5.03
4381 5292 1.005394 CGGTGTTGTAAGGGCTCGT 60.005 57.895 0.00 0.00 0.00 4.18
4382 5293 0.601841 CGGTGTTGTAAGGGCTCGTT 60.602 55.000 0.00 0.00 0.00 3.85
4383 5294 1.601166 GGTGTTGTAAGGGCTCGTTT 58.399 50.000 0.00 0.00 0.00 3.60
4384 5295 1.265905 GGTGTTGTAAGGGCTCGTTTG 59.734 52.381 0.00 0.00 0.00 2.93
4385 5296 1.265905 GTGTTGTAAGGGCTCGTTTGG 59.734 52.381 0.00 0.00 0.00 3.28
4386 5297 1.134037 TGTTGTAAGGGCTCGTTTGGT 60.134 47.619 0.00 0.00 0.00 3.67
4387 5298 2.104451 TGTTGTAAGGGCTCGTTTGGTA 59.896 45.455 0.00 0.00 0.00 3.25
4388 5299 2.740447 GTTGTAAGGGCTCGTTTGGTAG 59.260 50.000 0.00 0.00 0.00 3.18
4389 5300 1.338389 TGTAAGGGCTCGTTTGGTAGC 60.338 52.381 0.00 0.00 38.03 3.58
4390 5301 1.066358 GTAAGGGCTCGTTTGGTAGCT 60.066 52.381 0.00 0.00 38.80 3.32
4391 5302 1.272807 AAGGGCTCGTTTGGTAGCTA 58.727 50.000 0.00 0.00 38.80 3.32
4392 5303 0.824759 AGGGCTCGTTTGGTAGCTAG 59.175 55.000 0.00 0.00 38.80 3.42
4393 5304 0.822164 GGGCTCGTTTGGTAGCTAGA 59.178 55.000 0.00 0.00 38.80 2.43
4394 5305 1.202428 GGGCTCGTTTGGTAGCTAGAG 60.202 57.143 0.00 0.00 38.80 2.43
4395 5306 1.749634 GGCTCGTTTGGTAGCTAGAGA 59.250 52.381 9.06 0.00 38.80 3.10
4396 5307 2.362717 GGCTCGTTTGGTAGCTAGAGAT 59.637 50.000 9.06 0.00 38.80 2.75
4397 5308 3.181474 GGCTCGTTTGGTAGCTAGAGATT 60.181 47.826 9.06 0.00 38.80 2.40
4398 5309 4.045783 GCTCGTTTGGTAGCTAGAGATTC 58.954 47.826 9.06 0.00 35.80 2.52
4399 5310 4.202070 GCTCGTTTGGTAGCTAGAGATTCT 60.202 45.833 9.06 0.00 35.80 2.40
4400 5311 5.502153 TCGTTTGGTAGCTAGAGATTCTC 57.498 43.478 5.49 5.49 0.00 2.87
4401 5312 5.194432 TCGTTTGGTAGCTAGAGATTCTCT 58.806 41.667 19.64 19.64 43.83 3.10
4402 5313 5.066634 TCGTTTGGTAGCTAGAGATTCTCTG 59.933 44.000 23.60 15.00 41.37 3.35
4403 5314 5.596845 GTTTGGTAGCTAGAGATTCTCTGG 58.403 45.833 23.60 21.57 41.37 3.86
4404 5315 3.838565 TGGTAGCTAGAGATTCTCTGGG 58.161 50.000 23.60 16.89 41.37 4.45
4405 5316 2.560981 GGTAGCTAGAGATTCTCTGGGC 59.439 54.545 23.60 23.72 41.37 5.36
4406 5317 1.715785 AGCTAGAGATTCTCTGGGCC 58.284 55.000 23.60 10.60 41.37 5.80
4407 5318 1.062581 AGCTAGAGATTCTCTGGGCCA 60.063 52.381 23.60 5.85 41.37 5.36
4408 5319 1.977129 GCTAGAGATTCTCTGGGCCAT 59.023 52.381 23.60 0.00 41.37 4.40
4409 5320 2.371510 GCTAGAGATTCTCTGGGCCATT 59.628 50.000 23.60 0.30 41.37 3.16
4410 5321 3.181446 GCTAGAGATTCTCTGGGCCATTT 60.181 47.826 23.60 0.00 41.37 2.32
4411 5322 4.688321 GCTAGAGATTCTCTGGGCCATTTT 60.688 45.833 23.60 0.00 41.37 1.82
4412 5323 4.328118 AGAGATTCTCTGGGCCATTTTT 57.672 40.909 15.41 0.00 39.62 1.94
4413 5324 4.276642 AGAGATTCTCTGGGCCATTTTTC 58.723 43.478 15.41 0.82 39.62 2.29
4414 5325 4.017683 AGAGATTCTCTGGGCCATTTTTCT 60.018 41.667 15.41 6.26 39.62 2.52
4415 5326 4.021916 AGATTCTCTGGGCCATTTTTCTG 58.978 43.478 6.72 0.00 0.00 3.02
4416 5327 2.220653 TCTCTGGGCCATTTTTCTGG 57.779 50.000 6.72 0.00 39.45 3.86
4417 5328 1.188863 CTCTGGGCCATTTTTCTGGG 58.811 55.000 6.72 0.00 36.75 4.45
4422 5333 3.904586 GCCATTTTTCTGGGCGAAA 57.095 47.368 0.00 0.00 39.76 3.46
4423 5334 2.162319 GCCATTTTTCTGGGCGAAAA 57.838 45.000 0.00 0.00 46.81 2.29
4428 5339 1.783071 TTTTCTGGGCGAAAAACCCT 58.217 45.000 0.00 0.00 45.83 4.34
4429 5340 1.684450 TTTTCTGGGCGAAAAACCCTC 59.316 47.619 0.00 0.00 45.83 4.30
4430 5341 3.902287 TTTTCTGGGCGAAAAACCCTCG 61.902 50.000 0.00 0.00 45.83 4.63
4432 5343 2.281970 GGGCGAAAAACCCTCGGT 60.282 61.111 0.00 0.00 44.68 4.69
4433 5344 2.622962 GGGCGAAAAACCCTCGGTG 61.623 63.158 0.00 0.00 44.68 4.94
4434 5345 2.622962 GGCGAAAAACCCTCGGTGG 61.623 63.158 0.00 0.00 35.34 4.61
4435 5346 1.895231 GCGAAAAACCCTCGGTGGT 60.895 57.895 0.00 0.00 41.55 4.16
4443 5354 2.484742 ACCCTCGGTGGTTCATTAAC 57.515 50.000 0.00 0.00 33.91 2.01
4457 5368 4.817318 TCATTAACCTGGGGAAATTTGC 57.183 40.909 0.22 0.22 0.00 3.68
4458 5369 4.163427 TCATTAACCTGGGGAAATTTGCA 58.837 39.130 12.05 0.00 0.00 4.08
4459 5370 4.594920 TCATTAACCTGGGGAAATTTGCAA 59.405 37.500 12.05 0.00 0.00 4.08
4460 5371 4.615588 TTAACCTGGGGAAATTTGCAAG 57.384 40.909 12.05 8.13 0.00 4.01
4461 5372 1.351076 ACCTGGGGAAATTTGCAAGG 58.649 50.000 21.64 21.64 32.54 3.61
4462 5373 1.351076 CCTGGGGAAATTTGCAAGGT 58.649 50.000 17.47 0.00 0.00 3.50
4463 5374 1.276138 CCTGGGGAAATTTGCAAGGTC 59.724 52.381 17.47 0.00 0.00 3.85
4464 5375 1.969923 CTGGGGAAATTTGCAAGGTCA 59.030 47.619 12.05 1.39 0.00 4.02
4465 5376 2.568509 CTGGGGAAATTTGCAAGGTCAT 59.431 45.455 12.05 0.00 0.00 3.06
4466 5377 2.978278 TGGGGAAATTTGCAAGGTCATT 59.022 40.909 12.05 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
378 380 1.939838 GCTCGGGTCGAAATTGACACT 60.940 52.381 1.77 0.00 40.20 3.55
421 424 1.923356 AAAATCGGCCCAGTCATGTT 58.077 45.000 0.00 0.00 0.00 2.71
465 468 2.044551 CCAAGAAGGCCCTCCAGC 60.045 66.667 0.00 0.00 33.74 4.85
528 531 2.969628 TAGCAAAGCAGAGGTAGAGC 57.030 50.000 0.00 0.00 0.00 4.09
551 554 0.662374 GAACGTTCCGAACAGAGCGA 60.662 55.000 17.68 0.00 42.32 4.93
552 555 0.663568 AGAACGTTCCGAACAGAGCG 60.664 55.000 24.22 0.00 44.82 5.03
666 669 4.452733 GTGGGGAACGAGAGGCGG 62.453 72.222 0.00 0.00 46.49 6.13
668 671 4.452733 CGGTGGGGAACGAGAGGC 62.453 72.222 0.00 0.00 0.00 4.70
669 672 4.452733 GCGGTGGGGAACGAGAGG 62.453 72.222 0.00 0.00 0.00 3.69
670 673 4.452733 GGCGGTGGGGAACGAGAG 62.453 72.222 0.00 0.00 0.00 3.20
672 675 4.452733 GAGGCGGTGGGGAACGAG 62.453 72.222 0.00 0.00 0.00 4.18
783 1088 0.234884 GGTGAAGAAACCGCGAAGTG 59.765 55.000 8.23 0.00 38.04 3.16
809 1114 3.151022 GGAGAGACCTGAGCGGGG 61.151 72.222 0.00 0.00 36.97 5.73
827 1132 4.414732 GGCTAACCCTAGAACGCG 57.585 61.111 3.53 3.53 0.00 6.01
958 1288 1.542767 GCTCGGGTAATTAGGGAAGGC 60.543 57.143 0.00 0.00 0.00 4.35
969 1299 4.143333 GAGGCGCTGCTCGGGTAA 62.143 66.667 7.64 0.00 38.94 2.85
1011 1341 3.788766 CGAAACAAGGAGCGCCCG 61.789 66.667 2.29 0.00 40.87 6.13
1278 1611 1.006571 GAGGCGGACGTCAAACTGA 60.007 57.895 18.91 0.00 0.00 3.41
1503 1842 3.768922 GCAGAGCCAGAGACGCCT 61.769 66.667 0.00 0.00 0.00 5.52
1605 1953 3.381272 GCAGGCAGCAATTATAGGTGAAA 59.619 43.478 0.00 0.00 44.79 2.69
1607 1955 2.575532 GCAGGCAGCAATTATAGGTGA 58.424 47.619 0.00 0.00 44.79 4.02
1635 1984 1.737696 CGGCATGGTTCAAGTACGCTA 60.738 52.381 0.00 0.00 0.00 4.26
1642 1991 1.203052 AGCAATTCGGCATGGTTCAAG 59.797 47.619 0.00 0.00 35.83 3.02
1647 1996 3.088532 TCTTTAAGCAATTCGGCATGGT 58.911 40.909 0.00 0.00 35.83 3.55
1649 1998 5.179045 AGATCTTTAAGCAATTCGGCATG 57.821 39.130 0.00 0.00 35.83 4.06
1693 2054 7.559335 ACCATGATGAGGCAGAATACTAATA 57.441 36.000 0.00 0.00 0.00 0.98
1698 2059 5.126061 ACAAAACCATGATGAGGCAGAATAC 59.874 40.000 0.00 0.00 0.00 1.89
1704 2065 5.015515 TGATTACAAAACCATGATGAGGCA 58.984 37.500 0.00 0.00 0.00 4.75
1705 2066 5.581126 TGATTACAAAACCATGATGAGGC 57.419 39.130 0.00 0.00 0.00 4.70
1708 2069 6.817641 GGCAATTGATTACAAAACCATGATGA 59.182 34.615 10.34 0.00 39.54 2.92
1709 2070 6.037391 GGGCAATTGATTACAAAACCATGATG 59.963 38.462 10.34 0.00 39.54 3.07
1710 2071 6.114767 GGGCAATTGATTACAAAACCATGAT 58.885 36.000 10.34 0.00 39.54 2.45
1713 2074 4.622695 CGGGGCAATTGATTACAAAACCAT 60.623 41.667 10.34 0.00 39.54 3.55
1728 2089 0.251341 AAGCTCAACTTCGGGGCAAT 60.251 50.000 0.00 0.00 30.77 3.56
1752 2113 9.750882 GCTTTTATTTACACCTAACGTCTAAAG 57.249 33.333 0.00 0.00 0.00 1.85
1753 2114 8.720562 GGCTTTTATTTACACCTAACGTCTAAA 58.279 33.333 0.00 0.00 0.00 1.85
1754 2115 7.877097 TGGCTTTTATTTACACCTAACGTCTAA 59.123 33.333 0.00 0.00 0.00 2.10
1755 2116 7.385267 TGGCTTTTATTTACACCTAACGTCTA 58.615 34.615 0.00 0.00 0.00 2.59
1756 2117 6.232692 TGGCTTTTATTTACACCTAACGTCT 58.767 36.000 0.00 0.00 0.00 4.18
1757 2118 6.484818 TGGCTTTTATTTACACCTAACGTC 57.515 37.500 0.00 0.00 0.00 4.34
1758 2119 6.880942 TTGGCTTTTATTTACACCTAACGT 57.119 33.333 0.00 0.00 0.00 3.99
1829 2192 1.975660 TACAAGTGCAAACCCTGTCC 58.024 50.000 0.00 0.00 0.00 4.02
1832 2195 2.306847 AGGTTACAAGTGCAAACCCTG 58.693 47.619 12.60 0.00 43.04 4.45
1843 2223 3.077359 CCTTCCTCTGCAAGGTTACAAG 58.923 50.000 12.71 9.51 46.32 3.16
1865 2245 5.555966 TGCAGTCAGTTACATATTGTTCCA 58.444 37.500 0.00 0.00 0.00 3.53
2104 2779 5.888161 CCATGTGCCTAAAAGGAGAAGTAAT 59.112 40.000 0.00 0.00 37.67 1.89
2108 2783 3.944015 CTCCATGTGCCTAAAAGGAGAAG 59.056 47.826 0.00 0.00 44.12 2.85
2143 2818 0.679505 TGGTCCGTTCTCTGGAGTTG 59.320 55.000 0.00 0.00 35.82 3.16
2243 2918 1.816224 ACCGTGCCGAATTGCTTAAAT 59.184 42.857 0.00 0.00 0.00 1.40
2368 3046 7.563556 AGGTAGAAAAATTCTCCAGGACAAAAA 59.436 33.333 0.00 0.00 41.14 1.94
2369 3047 7.066781 AGGTAGAAAAATTCTCCAGGACAAAA 58.933 34.615 0.00 0.00 41.14 2.44
2410 3088 8.934507 ACTTTATGTGCTAGTTCAAGATCTAC 57.065 34.615 0.00 0.00 0.00 2.59
2434 3112 2.920490 GTCGATCTGAACTGAGCTCAAC 59.080 50.000 18.85 12.38 0.00 3.18
2444 3122 4.098044 TCCTATCTTGTGGTCGATCTGAAC 59.902 45.833 0.00 0.00 33.68 3.18
2453 3131 3.674997 TGCAAACTCCTATCTTGTGGTC 58.325 45.455 0.00 0.00 0.00 4.02
2456 3134 3.503363 TGCTTGCAAACTCCTATCTTGTG 59.497 43.478 0.00 0.00 0.00 3.33
2513 3371 9.911788 ATTATTGAACCATAAACAGAGACAGAT 57.088 29.630 0.00 0.00 0.00 2.90
2807 3666 0.447801 CTTCCAAATCGCTGAACCCG 59.552 55.000 0.00 0.00 0.00 5.28
3157 4054 2.149973 AGATTGTTCTGGATTGCCCC 57.850 50.000 0.00 0.00 0.00 5.80
3232 4129 6.710744 CCTCTCCTAGCAAAAACTTTGTTCTA 59.289 38.462 1.45 0.00 0.00 2.10
3238 4135 5.048846 TCACCTCTCCTAGCAAAAACTTT 57.951 39.130 0.00 0.00 0.00 2.66
3241 4138 4.216472 CCTTTCACCTCTCCTAGCAAAAAC 59.784 45.833 0.00 0.00 0.00 2.43
3279 4176 5.056480 TCGAAAGCACAAGTATGGATATGG 58.944 41.667 0.00 0.00 0.00 2.74
3315 4213 3.444034 GGAAAATACTCCCTTTCACCAGC 59.556 47.826 0.00 0.00 33.96 4.85
3322 4220 3.856206 TGGGCTAGGAAAATACTCCCTTT 59.144 43.478 0.00 0.00 35.95 3.11
3323 4221 3.202373 GTGGGCTAGGAAAATACTCCCTT 59.798 47.826 0.00 0.00 35.95 3.95
3326 4224 3.454812 TCAGTGGGCTAGGAAAATACTCC 59.545 47.826 0.00 0.00 35.51 3.85
3327 4225 4.755266 TCAGTGGGCTAGGAAAATACTC 57.245 45.455 0.00 0.00 0.00 2.59
3328 4226 5.501156 CTTTCAGTGGGCTAGGAAAATACT 58.499 41.667 0.00 0.00 0.00 2.12
3329 4227 4.640647 CCTTTCAGTGGGCTAGGAAAATAC 59.359 45.833 0.00 0.00 0.00 1.89
3337 4235 0.036388 TTCGCCTTTCAGTGGGCTAG 60.036 55.000 7.22 0.00 45.57 3.42
3352 4250 2.884827 ACGGAGGTAATACTTGTTCGC 58.115 47.619 0.00 0.00 0.00 4.70
3353 4251 5.032863 CAGTACGGAGGTAATACTTGTTCG 58.967 45.833 0.00 0.00 0.00 3.95
3354 4252 6.032717 GTCAGTACGGAGGTAATACTTGTTC 58.967 44.000 0.00 0.00 0.00 3.18
3356 4254 5.012239 TGTCAGTACGGAGGTAATACTTGT 58.988 41.667 0.00 0.00 0.00 3.16
3357 4255 5.106038 TGTGTCAGTACGGAGGTAATACTTG 60.106 44.000 0.00 0.00 0.00 3.16
3359 4257 4.592942 TGTGTCAGTACGGAGGTAATACT 58.407 43.478 0.00 0.00 0.00 2.12
3360 4258 4.637534 TCTGTGTCAGTACGGAGGTAATAC 59.362 45.833 0.00 0.00 32.42 1.89
3361 4259 4.847198 TCTGTGTCAGTACGGAGGTAATA 58.153 43.478 0.00 0.00 32.42 0.98
3362 4260 3.693807 TCTGTGTCAGTACGGAGGTAAT 58.306 45.455 0.00 0.00 32.42 1.89
3364 4262 2.708051 CTCTGTGTCAGTACGGAGGTA 58.292 52.381 0.00 0.00 45.90 3.08
3365 4263 1.535833 CTCTGTGTCAGTACGGAGGT 58.464 55.000 0.00 0.00 45.90 3.85
3368 4266 2.039480 ACTACCTCTGTGTCAGTACGGA 59.961 50.000 0.00 0.00 34.88 4.69
3369 4267 2.434428 ACTACCTCTGTGTCAGTACGG 58.566 52.381 0.00 0.00 32.61 4.02
3370 4268 4.252073 AGTACTACCTCTGTGTCAGTACG 58.748 47.826 0.00 0.00 43.96 3.67
3371 4269 7.678947 TTTAGTACTACCTCTGTGTCAGTAC 57.321 40.000 0.91 0.00 41.10 2.73
3372 4270 8.874744 AATTTAGTACTACCTCTGTGTCAGTA 57.125 34.615 0.91 0.00 32.61 2.74
3373 4271 7.778185 AATTTAGTACTACCTCTGTGTCAGT 57.222 36.000 0.91 0.00 32.61 3.41
3374 4272 8.958506 AGTAATTTAGTACTACCTCTGTGTCAG 58.041 37.037 0.91 0.00 32.42 3.51
3375 4273 8.874744 AGTAATTTAGTACTACCTCTGTGTCA 57.125 34.615 0.91 0.00 32.42 3.58
3413 4311 7.092757 TGCCTTCCATCAGCATATCTATATCAA 60.093 37.037 0.00 0.00 0.00 2.57
3492 4390 6.596888 TGATGGCATTCACTCAAAAACAAAAA 59.403 30.769 0.00 0.00 0.00 1.94
3493 4391 6.111382 TGATGGCATTCACTCAAAAACAAAA 58.889 32.000 0.00 0.00 0.00 2.44
3494 4392 5.668471 TGATGGCATTCACTCAAAAACAAA 58.332 33.333 0.00 0.00 0.00 2.83
3495 4393 5.273674 TGATGGCATTCACTCAAAAACAA 57.726 34.783 0.00 0.00 0.00 2.83
3517 4415 9.533253 GTGTGCTTATTTGATTAATAAAGCCAT 57.467 29.630 11.91 0.00 38.04 4.40
3557 4459 7.179694 CCCCCGTCTTTTCTTACTATATATCCA 59.820 40.741 0.00 0.00 0.00 3.41
3558 4460 7.398332 TCCCCCGTCTTTTCTTACTATATATCC 59.602 40.741 0.00 0.00 0.00 2.59
3564 4466 4.966805 TGATCCCCCGTCTTTTCTTACTAT 59.033 41.667 0.00 0.00 0.00 2.12
3565 4467 4.355549 TGATCCCCCGTCTTTTCTTACTA 58.644 43.478 0.00 0.00 0.00 1.82
3578 4480 0.321671 ATTGCGTAGATGATCCCCCG 59.678 55.000 0.00 0.00 0.00 5.73
3582 4484 8.534333 TTATCTTGTAATTGCGTAGATGATCC 57.466 34.615 16.14 0.00 0.00 3.36
3614 4516 6.025896 TGAGTTAGCGAAACATAGTTACGAG 58.974 40.000 7.58 0.00 40.83 4.18
3617 4519 7.391786 CACATGAGTTAGCGAAACATAGTTAC 58.608 38.462 0.00 0.00 40.83 2.50
3629 4531 3.792401 TGGTATTCCACATGAGTTAGCG 58.208 45.455 0.00 0.00 39.03 4.26
3643 4545 1.494721 TCTGGGAGGCCAATGGTATTC 59.505 52.381 5.01 0.00 0.00 1.75
3644 4546 1.496429 CTCTGGGAGGCCAATGGTATT 59.504 52.381 5.01 0.00 0.00 1.89
3646 4548 0.044092 TCTCTGGGAGGCCAATGGTA 59.956 55.000 5.01 0.00 0.00 3.25
3661 4563 8.588290 AATAGTTCAATACTCTCACTGTCTCT 57.412 34.615 0.00 0.00 38.33 3.10
3671 4573 8.925338 ACGGAAATAGGAATAGTTCAATACTCT 58.075 33.333 0.00 0.00 38.33 3.24
3701 4603 9.836864 ACAGTTTATGCTGATTGTATTGATCTA 57.163 29.630 0.00 0.00 39.62 1.98
3716 4618 7.775093 TGGAATGAATAAGCTACAGTTTATGCT 59.225 33.333 5.67 0.00 32.87 3.79
3727 4629 4.481368 ACGTGGTGGAATGAATAAGCTA 57.519 40.909 0.00 0.00 0.00 3.32
3733 4635 2.556622 GGACAAACGTGGTGGAATGAAT 59.443 45.455 0.00 0.00 0.00 2.57
3746 4648 1.600413 GCTTGCAAAGGAGGACAAACG 60.600 52.381 0.00 0.00 46.35 3.60
3778 4680 2.796593 GCAGGTGATTGAAGTTGTTTGC 59.203 45.455 0.00 0.00 0.00 3.68
3779 4681 4.044336 TGCAGGTGATTGAAGTTGTTTG 57.956 40.909 0.00 0.00 0.00 2.93
3784 4686 4.734398 TTGTTTGCAGGTGATTGAAGTT 57.266 36.364 0.00 0.00 0.00 2.66
3785 4687 4.341806 TGATTGTTTGCAGGTGATTGAAGT 59.658 37.500 0.00 0.00 0.00 3.01
3786 4688 4.873817 TGATTGTTTGCAGGTGATTGAAG 58.126 39.130 0.00 0.00 0.00 3.02
3787 4689 4.583907 TCTGATTGTTTGCAGGTGATTGAA 59.416 37.500 0.00 0.00 33.05 2.69
3788 4690 4.143543 TCTGATTGTTTGCAGGTGATTGA 58.856 39.130 0.00 0.00 33.05 2.57
3789 4691 4.508461 TCTGATTGTTTGCAGGTGATTG 57.492 40.909 0.00 0.00 33.05 2.67
3790 4692 5.244402 TGAATCTGATTGTTTGCAGGTGATT 59.756 36.000 7.78 0.00 33.05 2.57
3791 4693 4.768448 TGAATCTGATTGTTTGCAGGTGAT 59.232 37.500 7.78 0.00 33.05 3.06
3792 4694 4.143543 TGAATCTGATTGTTTGCAGGTGA 58.856 39.130 7.78 0.00 33.05 4.02
3793 4695 4.482386 CTGAATCTGATTGTTTGCAGGTG 58.518 43.478 7.78 0.00 33.05 4.00
3794 4696 3.057033 GCTGAATCTGATTGTTTGCAGGT 60.057 43.478 7.78 0.00 33.05 4.00
3795 4697 3.508762 GCTGAATCTGATTGTTTGCAGG 58.491 45.455 7.78 0.00 33.05 4.85
3796 4698 3.120095 TCGCTGAATCTGATTGTTTGCAG 60.120 43.478 7.78 9.27 0.00 4.41
3797 4699 2.813172 TCGCTGAATCTGATTGTTTGCA 59.187 40.909 7.78 0.00 0.00 4.08
3798 4700 3.166657 GTCGCTGAATCTGATTGTTTGC 58.833 45.455 7.78 5.69 0.00 3.68
3799 4701 3.123453 TCGTCGCTGAATCTGATTGTTTG 59.877 43.478 7.78 0.00 0.00 2.93
3800 4702 3.325870 TCGTCGCTGAATCTGATTGTTT 58.674 40.909 7.78 0.00 0.00 2.83
3801 4703 2.959516 TCGTCGCTGAATCTGATTGTT 58.040 42.857 7.78 0.00 0.00 2.83
3802 4704 2.654749 TCGTCGCTGAATCTGATTGT 57.345 45.000 7.78 0.00 0.00 2.71
3803 4705 4.269312 CAAATCGTCGCTGAATCTGATTG 58.731 43.478 7.78 0.00 0.00 2.67
3835 4737 1.244019 GCGAACTGGTGGCATCCTTT 61.244 55.000 0.00 0.00 0.00 3.11
3838 4740 3.134127 GGCGAACTGGTGGCATCC 61.134 66.667 1.29 0.00 0.00 3.51
3885 4790 0.467474 TCCATACTCGTCATCGGCCT 60.467 55.000 0.00 0.00 37.69 5.19
3896 4801 3.258372 TCATCGGCCTATGTTCCATACTC 59.742 47.826 16.28 0.00 0.00 2.59
3897 4802 3.006967 GTCATCGGCCTATGTTCCATACT 59.993 47.826 16.28 0.00 0.00 2.12
3898 4803 3.326747 GTCATCGGCCTATGTTCCATAC 58.673 50.000 16.28 3.30 0.00 2.39
3899 4804 2.029380 CGTCATCGGCCTATGTTCCATA 60.029 50.000 16.28 0.00 0.00 2.74
3900 4805 1.270305 CGTCATCGGCCTATGTTCCAT 60.270 52.381 16.28 0.00 0.00 3.41
3901 4806 0.104120 CGTCATCGGCCTATGTTCCA 59.896 55.000 16.28 0.00 0.00 3.53
3902 4807 0.387929 TCGTCATCGGCCTATGTTCC 59.612 55.000 16.28 5.87 37.69 3.62
3903 4808 1.067212 ACTCGTCATCGGCCTATGTTC 59.933 52.381 16.28 10.18 37.69 3.18
3904 4809 1.112113 ACTCGTCATCGGCCTATGTT 58.888 50.000 16.28 0.00 37.69 2.71
3905 4810 1.977056 TACTCGTCATCGGCCTATGT 58.023 50.000 16.28 0.24 37.69 2.29
3906 4811 2.416027 CCATACTCGTCATCGGCCTATG 60.416 54.545 11.01 11.01 37.69 2.23
3907 4812 1.819288 CCATACTCGTCATCGGCCTAT 59.181 52.381 0.00 0.00 37.69 2.57
3908 4813 1.202842 TCCATACTCGTCATCGGCCTA 60.203 52.381 0.00 0.00 37.69 3.93
3909 4814 0.467474 TCCATACTCGTCATCGGCCT 60.467 55.000 0.00 0.00 37.69 5.19
3910 4815 0.387929 TTCCATACTCGTCATCGGCC 59.612 55.000 0.00 0.00 37.69 6.13
3911 4816 1.202371 TGTTCCATACTCGTCATCGGC 60.202 52.381 0.00 0.00 37.69 5.54
3912 4817 2.863401 TGTTCCATACTCGTCATCGG 57.137 50.000 0.00 0.00 37.69 4.18
3913 4818 6.822073 TTTTATGTTCCATACTCGTCATCG 57.178 37.500 0.00 0.00 38.55 3.84
3914 4819 7.970384 TGTTTTTATGTTCCATACTCGTCATC 58.030 34.615 0.00 0.00 0.00 2.92
3915 4820 7.915293 TGTTTTTATGTTCCATACTCGTCAT 57.085 32.000 0.00 0.00 0.00 3.06
3916 4821 7.625395 GCATGTTTTTATGTTCCATACTCGTCA 60.625 37.037 0.00 0.00 0.00 4.35
3917 4822 6.687105 GCATGTTTTTATGTTCCATACTCGTC 59.313 38.462 0.00 0.00 0.00 4.20
3918 4823 6.150307 TGCATGTTTTTATGTTCCATACTCGT 59.850 34.615 0.00 0.00 0.00 4.18
3919 4824 6.468956 GTGCATGTTTTTATGTTCCATACTCG 59.531 38.462 0.00 0.00 0.00 4.18
3920 4825 7.312154 TGTGCATGTTTTTATGTTCCATACTC 58.688 34.615 0.00 0.00 0.00 2.59
3924 4829 5.352016 GCATGTGCATGTTTTTATGTTCCAT 59.648 36.000 12.96 0.00 40.80 3.41
3950 4855 1.197812 AGCAAGATGGGCAATTTCCC 58.802 50.000 6.16 6.16 46.73 3.97
3961 4866 2.806818 CCTCGATGATGGAAGCAAGATG 59.193 50.000 0.00 0.00 33.49 2.90
3962 4867 2.809665 GCCTCGATGATGGAAGCAAGAT 60.810 50.000 0.00 0.00 33.49 2.40
3963 4868 1.473965 GCCTCGATGATGGAAGCAAGA 60.474 52.381 0.00 0.00 33.49 3.02
3964 4869 0.942962 GCCTCGATGATGGAAGCAAG 59.057 55.000 0.00 0.00 33.49 4.01
3965 4870 0.464373 GGCCTCGATGATGGAAGCAA 60.464 55.000 0.00 0.00 33.49 3.91
3966 4871 1.146930 GGCCTCGATGATGGAAGCA 59.853 57.895 0.00 0.00 35.55 3.91
3967 4872 1.958205 CGGCCTCGATGATGGAAGC 60.958 63.158 0.00 0.00 39.00 3.86
3968 4873 1.742146 TCGGCCTCGATGATGGAAG 59.258 57.895 0.00 0.00 40.88 3.46
3969 4874 3.948702 TCGGCCTCGATGATGGAA 58.051 55.556 0.00 0.00 40.88 3.53
3978 4883 0.386100 CATACTCGTCATCGGCCTCG 60.386 60.000 0.00 0.00 37.69 4.63
3979 4884 0.039074 CCATACTCGTCATCGGCCTC 60.039 60.000 0.00 0.00 37.69 4.70
3980 4885 0.467474 TCCATACTCGTCATCGGCCT 60.467 55.000 0.00 0.00 37.69 5.19
3981 4886 0.387929 TTCCATACTCGTCATCGGCC 59.612 55.000 0.00 0.00 37.69 6.13
3982 4887 1.202371 TGTTCCATACTCGTCATCGGC 60.202 52.381 0.00 0.00 37.69 5.54
3983 4888 2.863401 TGTTCCATACTCGTCATCGG 57.137 50.000 0.00 0.00 37.69 4.18
3984 4889 4.476862 CCTATGTTCCATACTCGTCATCG 58.523 47.826 0.00 0.00 38.55 3.84
3985 4890 4.238514 GCCTATGTTCCATACTCGTCATC 58.761 47.826 0.00 0.00 0.00 2.92
3986 4891 3.006967 GGCCTATGTTCCATACTCGTCAT 59.993 47.826 0.00 0.00 0.00 3.06
3987 4892 2.364324 GGCCTATGTTCCATACTCGTCA 59.636 50.000 0.00 0.00 0.00 4.35
3988 4893 2.607282 CGGCCTATGTTCCATACTCGTC 60.607 54.545 0.00 0.00 0.00 4.20
3989 4894 1.340248 CGGCCTATGTTCCATACTCGT 59.660 52.381 0.00 0.00 0.00 4.18
3990 4895 1.611977 TCGGCCTATGTTCCATACTCG 59.388 52.381 0.00 0.00 0.00 4.18
3991 4896 3.258372 TCATCGGCCTATGTTCCATACTC 59.742 47.826 16.28 0.00 0.00 2.59
3992 4897 3.006967 GTCATCGGCCTATGTTCCATACT 59.993 47.826 16.28 0.00 0.00 2.12
3993 4898 3.326747 GTCATCGGCCTATGTTCCATAC 58.673 50.000 16.28 3.30 0.00 2.39
3994 4899 2.029380 CGTCATCGGCCTATGTTCCATA 60.029 50.000 16.28 0.00 0.00 2.74
3995 4900 1.270305 CGTCATCGGCCTATGTTCCAT 60.270 52.381 16.28 0.00 0.00 3.41
3996 4901 0.104120 CGTCATCGGCCTATGTTCCA 59.896 55.000 16.28 0.00 0.00 3.53
3997 4902 0.387929 TCGTCATCGGCCTATGTTCC 59.612 55.000 16.28 5.87 37.69 3.62
3998 4903 1.067212 ACTCGTCATCGGCCTATGTTC 59.933 52.381 16.28 10.18 37.69 3.18
3999 4904 1.112113 ACTCGTCATCGGCCTATGTT 58.888 50.000 16.28 0.00 37.69 2.71
4000 4905 1.977056 TACTCGTCATCGGCCTATGT 58.023 50.000 16.28 0.24 37.69 2.29
4001 4906 2.416027 CCATACTCGTCATCGGCCTATG 60.416 54.545 11.01 11.01 37.69 2.23
4002 4907 1.819288 CCATACTCGTCATCGGCCTAT 59.181 52.381 0.00 0.00 37.69 2.57
4003 4908 1.202842 TCCATACTCGTCATCGGCCTA 60.203 52.381 0.00 0.00 37.69 3.93
4004 4909 0.467474 TCCATACTCGTCATCGGCCT 60.467 55.000 0.00 0.00 37.69 5.19
4005 4910 0.387929 TTCCATACTCGTCATCGGCC 59.612 55.000 0.00 0.00 37.69 6.13
4006 4911 1.202371 TGTTCCATACTCGTCATCGGC 60.202 52.381 0.00 0.00 37.69 5.54
4007 4912 2.863401 TGTTCCATACTCGTCATCGG 57.137 50.000 0.00 0.00 37.69 4.18
4008 4913 6.822073 TTTTATGTTCCATACTCGTCATCG 57.178 37.500 0.00 0.00 38.55 3.84
4009 4914 7.970384 TGTTTTTATGTTCCATACTCGTCATC 58.030 34.615 0.00 0.00 0.00 2.92
4010 4915 7.915293 TGTTTTTATGTTCCATACTCGTCAT 57.085 32.000 0.00 0.00 0.00 3.06
4011 4916 7.625395 GCATGTTTTTATGTTCCATACTCGTCA 60.625 37.037 0.00 0.00 0.00 4.35
4012 4917 6.687105 GCATGTTTTTATGTTCCATACTCGTC 59.313 38.462 0.00 0.00 0.00 4.20
4013 4918 6.150307 TGCATGTTTTTATGTTCCATACTCGT 59.850 34.615 0.00 0.00 0.00 4.18
4014 4919 6.468956 GTGCATGTTTTTATGTTCCATACTCG 59.531 38.462 0.00 0.00 0.00 4.18
4015 4920 7.312154 TGTGCATGTTTTTATGTTCCATACTC 58.688 34.615 0.00 0.00 0.00 2.59
4016 4921 7.225784 TGTGCATGTTTTTATGTTCCATACT 57.774 32.000 0.00 0.00 0.00 2.12
4017 4922 7.464444 GCATGTGCATGTTTTTATGTTCCATAC 60.464 37.037 12.96 0.00 40.80 2.39
4018 4923 6.534436 GCATGTGCATGTTTTTATGTTCCATA 59.466 34.615 12.96 0.00 40.80 2.74
4019 4924 5.352016 GCATGTGCATGTTTTTATGTTCCAT 59.648 36.000 12.96 0.00 40.80 3.41
4020 4925 4.689812 GCATGTGCATGTTTTTATGTTCCA 59.310 37.500 12.96 0.00 40.80 3.53
4021 4926 5.207305 GCATGTGCATGTTTTTATGTTCC 57.793 39.130 12.96 0.00 40.80 3.62
4036 4941 0.741927 GGCAATTTCCCTGCATGTGC 60.742 55.000 0.00 0.00 41.78 4.57
4037 4942 0.108041 GGGCAATTTCCCTGCATGTG 60.108 55.000 5.83 0.00 43.13 3.21
4038 4943 0.544833 TGGGCAATTTCCCTGCATGT 60.545 50.000 14.66 0.00 46.67 3.21
4039 4944 0.834612 ATGGGCAATTTCCCTGCATG 59.165 50.000 14.66 0.00 46.67 4.06
4040 4945 1.125633 GATGGGCAATTTCCCTGCAT 58.874 50.000 14.66 0.00 46.67 3.96
4041 4946 0.041535 AGATGGGCAATTTCCCTGCA 59.958 50.000 14.66 0.00 46.67 4.41
4042 4947 1.134610 CAAGATGGGCAATTTCCCTGC 60.135 52.381 14.66 6.26 46.67 4.85
4043 4948 2.167075 GACAAGATGGGCAATTTCCCTG 59.833 50.000 14.66 6.65 46.67 4.45
4044 4949 2.225343 TGACAAGATGGGCAATTTCCCT 60.225 45.455 14.66 0.00 46.67 4.20
4045 4950 2.178580 TGACAAGATGGGCAATTTCCC 58.821 47.619 6.16 6.16 46.73 3.97
4046 4951 3.431207 CCATGACAAGATGGGCAATTTCC 60.431 47.826 0.00 0.00 39.53 3.13
4047 4952 3.448301 TCCATGACAAGATGGGCAATTTC 59.552 43.478 0.00 0.00 42.95 2.17
4048 4953 3.443052 TCCATGACAAGATGGGCAATTT 58.557 40.909 0.00 0.00 42.95 1.82
4049 4954 3.104519 TCCATGACAAGATGGGCAATT 57.895 42.857 0.00 0.00 42.95 2.32
4050 4955 2.832643 TCCATGACAAGATGGGCAAT 57.167 45.000 0.00 0.00 42.95 3.56
4051 4956 2.832643 ATCCATGACAAGATGGGCAA 57.167 45.000 0.00 0.00 42.95 4.52
4052 4957 3.554934 GTTATCCATGACAAGATGGGCA 58.445 45.455 0.00 0.00 42.95 5.36
4053 4958 2.887152 GGTTATCCATGACAAGATGGGC 59.113 50.000 0.00 0.00 42.95 5.36
4054 4959 3.141398 CGGTTATCCATGACAAGATGGG 58.859 50.000 0.00 0.00 42.95 4.00
4055 4960 3.561310 CACGGTTATCCATGACAAGATGG 59.439 47.826 0.00 0.00 43.96 3.51
4056 4961 3.002656 GCACGGTTATCCATGACAAGATG 59.997 47.826 0.00 0.00 0.00 2.90
4097 5002 5.452078 AGATGCCTCGTTTCATTTTGAAA 57.548 34.783 0.00 0.00 43.37 2.69
4122 5032 7.806014 TCAGATTCGTGCCAAGTTAAATTAAAC 59.194 33.333 0.00 0.00 0.00 2.01
4152 5062 8.037382 ACACAAGAGAATCAGTTACATTGATG 57.963 34.615 0.00 0.00 37.82 3.07
4165 5076 9.646427 AGTTCAGAGTAATAACACAAGAGAATC 57.354 33.333 0.00 0.00 0.00 2.52
4166 5077 9.429359 CAGTTCAGAGTAATAACACAAGAGAAT 57.571 33.333 0.00 0.00 0.00 2.40
4183 5094 5.745514 CACAAACTTCATCACAGTTCAGAG 58.254 41.667 0.00 0.00 33.12 3.35
4189 5100 4.456911 CCTATGCACAAACTTCATCACAGT 59.543 41.667 0.00 0.00 0.00 3.55
4190 5101 4.142534 CCCTATGCACAAACTTCATCACAG 60.143 45.833 0.00 0.00 0.00 3.66
4191 5102 3.758023 CCCTATGCACAAACTTCATCACA 59.242 43.478 0.00 0.00 0.00 3.58
4192 5103 4.009675 TCCCTATGCACAAACTTCATCAC 58.990 43.478 0.00 0.00 0.00 3.06
4193 5104 4.009675 GTCCCTATGCACAAACTTCATCA 58.990 43.478 0.00 0.00 0.00 3.07
4194 5105 3.063997 CGTCCCTATGCACAAACTTCATC 59.936 47.826 0.00 0.00 0.00 2.92
4195 5106 3.009723 CGTCCCTATGCACAAACTTCAT 58.990 45.455 0.00 0.00 0.00 2.57
4196 5107 2.422597 CGTCCCTATGCACAAACTTCA 58.577 47.619 0.00 0.00 0.00 3.02
4197 5108 1.737793 CCGTCCCTATGCACAAACTTC 59.262 52.381 0.00 0.00 0.00 3.01
4198 5109 1.349688 TCCGTCCCTATGCACAAACTT 59.650 47.619 0.00 0.00 0.00 2.66
4199 5110 0.981183 TCCGTCCCTATGCACAAACT 59.019 50.000 0.00 0.00 0.00 2.66
4200 5111 1.467342 GTTCCGTCCCTATGCACAAAC 59.533 52.381 0.00 0.00 0.00 2.93
4201 5112 1.072489 TGTTCCGTCCCTATGCACAAA 59.928 47.619 0.00 0.00 0.00 2.83
4202 5113 0.687920 TGTTCCGTCCCTATGCACAA 59.312 50.000 0.00 0.00 0.00 3.33
4203 5114 0.687920 TTGTTCCGTCCCTATGCACA 59.312 50.000 0.00 0.00 0.00 4.57
4204 5115 1.816074 TTTGTTCCGTCCCTATGCAC 58.184 50.000 0.00 0.00 0.00 4.57
4205 5116 2.799126 ATTTGTTCCGTCCCTATGCA 57.201 45.000 0.00 0.00 0.00 3.96
4206 5117 4.196971 AGTTATTTGTTCCGTCCCTATGC 58.803 43.478 0.00 0.00 0.00 3.14
4207 5118 6.598064 AGAAAGTTATTTGTTCCGTCCCTATG 59.402 38.462 0.00 0.00 0.00 2.23
4208 5119 6.718294 AGAAAGTTATTTGTTCCGTCCCTAT 58.282 36.000 0.00 0.00 0.00 2.57
4209 5120 6.117975 AGAAAGTTATTTGTTCCGTCCCTA 57.882 37.500 0.00 0.00 0.00 3.53
4210 5121 4.981812 AGAAAGTTATTTGTTCCGTCCCT 58.018 39.130 0.00 0.00 0.00 4.20
4211 5122 6.997239 ATAGAAAGTTATTTGTTCCGTCCC 57.003 37.500 0.00 0.00 0.00 4.46
4212 5123 7.148523 ACGAATAGAAAGTTATTTGTTCCGTCC 60.149 37.037 0.00 0.00 35.19 4.79
4213 5124 7.736447 ACGAATAGAAAGTTATTTGTTCCGTC 58.264 34.615 0.00 0.00 35.19 4.79
4214 5125 7.662604 ACGAATAGAAAGTTATTTGTTCCGT 57.337 32.000 0.00 0.00 35.19 4.69
4215 5126 8.013378 ACAACGAATAGAAAGTTATTTGTTCCG 58.987 33.333 7.92 0.00 42.00 4.30
4216 5127 9.673454 AACAACGAATAGAAAGTTATTTGTTCC 57.327 29.630 7.92 0.00 42.00 3.62
4225 5136 9.019764 CATCAAAACAACAACGAATAGAAAGTT 57.980 29.630 0.00 0.00 0.00 2.66
4226 5137 8.402472 TCATCAAAACAACAACGAATAGAAAGT 58.598 29.630 0.00 0.00 0.00 2.66
4227 5138 8.781067 TCATCAAAACAACAACGAATAGAAAG 57.219 30.769 0.00 0.00 0.00 2.62
4228 5139 9.232082 CTTCATCAAAACAACAACGAATAGAAA 57.768 29.630 0.00 0.00 0.00 2.52
4229 5140 8.402472 ACTTCATCAAAACAACAACGAATAGAA 58.598 29.630 0.00 0.00 0.00 2.10
4230 5141 7.925993 ACTTCATCAAAACAACAACGAATAGA 58.074 30.769 0.00 0.00 0.00 1.98
4231 5142 8.560576 AACTTCATCAAAACAACAACGAATAG 57.439 30.769 0.00 0.00 0.00 1.73
4232 5143 8.802856 CAAACTTCATCAAAACAACAACGAATA 58.197 29.630 0.00 0.00 0.00 1.75
4233 5144 7.330700 ACAAACTTCATCAAAACAACAACGAAT 59.669 29.630 0.00 0.00 0.00 3.34
4234 5145 6.642950 ACAAACTTCATCAAAACAACAACGAA 59.357 30.769 0.00 0.00 0.00 3.85
4235 5146 6.088749 CACAAACTTCATCAAAACAACAACGA 59.911 34.615 0.00 0.00 0.00 3.85
4236 5147 6.232788 CACAAACTTCATCAAAACAACAACG 58.767 36.000 0.00 0.00 0.00 4.10
4237 5148 6.014898 GCACAAACTTCATCAAAACAACAAC 58.985 36.000 0.00 0.00 0.00 3.32
4238 5149 5.698089 TGCACAAACTTCATCAAAACAACAA 59.302 32.000 0.00 0.00 0.00 2.83
4239 5150 5.233225 TGCACAAACTTCATCAAAACAACA 58.767 33.333 0.00 0.00 0.00 3.33
4249 5160 3.009723 CGTCCCTATGCACAAACTTCAT 58.990 45.455 0.00 0.00 0.00 2.57
4270 5181 7.333672 ACAACGAATAGGAAGTTAATCTGTTCC 59.666 37.037 0.00 0.00 40.19 3.62
4279 5190 4.566070 CCCCCAACAACGAATAGGAAGTTA 60.566 45.833 0.00 0.00 0.00 2.24
4287 5198 0.674269 GACGCCCCCAACAACGAATA 60.674 55.000 0.00 0.00 0.00 1.75
4299 5210 3.003763 ACAAGGAGAGGACGCCCC 61.004 66.667 0.00 0.00 36.64 5.80
4300 5211 2.266055 CACAAGGAGAGGACGCCC 59.734 66.667 0.00 0.00 36.64 6.13
4301 5212 1.079750 GACACAAGGAGAGGACGCC 60.080 63.158 0.00 0.00 36.22 5.68
4302 5213 0.667792 GTGACACAAGGAGAGGACGC 60.668 60.000 0.00 0.00 0.00 5.19
4303 5214 0.962489 AGTGACACAAGGAGAGGACG 59.038 55.000 8.59 0.00 0.00 4.79
4304 5215 1.689273 ACAGTGACACAAGGAGAGGAC 59.311 52.381 8.59 0.00 0.00 3.85
4305 5216 2.088104 ACAGTGACACAAGGAGAGGA 57.912 50.000 8.59 0.00 0.00 3.71
4306 5217 2.760374 GAACAGTGACACAAGGAGAGG 58.240 52.381 8.59 0.00 0.00 3.69
4307 5218 2.223829 ACGAACAGTGACACAAGGAGAG 60.224 50.000 8.59 0.00 0.00 3.20
4308 5219 1.754803 ACGAACAGTGACACAAGGAGA 59.245 47.619 8.59 0.00 0.00 3.71
4309 5220 2.128035 GACGAACAGTGACACAAGGAG 58.872 52.381 8.59 0.00 0.00 3.69
4310 5221 1.754803 AGACGAACAGTGACACAAGGA 59.245 47.619 8.59 0.00 0.00 3.36
4311 5222 1.860950 CAGACGAACAGTGACACAAGG 59.139 52.381 8.59 0.00 0.00 3.61
4312 5223 2.809446 TCAGACGAACAGTGACACAAG 58.191 47.619 8.59 2.36 0.00 3.16
4313 5224 2.951457 TCAGACGAACAGTGACACAA 57.049 45.000 8.59 0.00 0.00 3.33
4314 5225 2.288213 GGATCAGACGAACAGTGACACA 60.288 50.000 8.59 0.00 0.00 3.72
4315 5226 2.288213 TGGATCAGACGAACAGTGACAC 60.288 50.000 0.00 0.00 0.00 3.67
4316 5227 1.960689 TGGATCAGACGAACAGTGACA 59.039 47.619 0.00 0.00 0.00 3.58
4317 5228 2.724977 TGGATCAGACGAACAGTGAC 57.275 50.000 0.00 0.00 0.00 3.67
4318 5229 3.961480 ATTGGATCAGACGAACAGTGA 57.039 42.857 0.00 0.00 0.00 3.41
4319 5230 3.865745 GGTATTGGATCAGACGAACAGTG 59.134 47.826 0.00 0.00 0.00 3.66
4320 5231 3.513912 TGGTATTGGATCAGACGAACAGT 59.486 43.478 0.00 0.00 0.00 3.55
4321 5232 4.123497 TGGTATTGGATCAGACGAACAG 57.877 45.455 0.00 0.00 0.00 3.16
4322 5233 4.081142 ACATGGTATTGGATCAGACGAACA 60.081 41.667 0.00 0.00 0.00 3.18
4323 5234 4.442706 ACATGGTATTGGATCAGACGAAC 58.557 43.478 0.00 0.00 0.00 3.95
4324 5235 4.753516 ACATGGTATTGGATCAGACGAA 57.246 40.909 0.00 0.00 0.00 3.85
4325 5236 4.753516 AACATGGTATTGGATCAGACGA 57.246 40.909 0.00 0.00 0.00 4.20
4326 5237 6.891624 CAATAACATGGTATTGGATCAGACG 58.108 40.000 28.67 6.47 37.67 4.18
4338 5249 8.349245 CGCAAATCTTTATCCAATAACATGGTA 58.651 33.333 0.00 0.00 41.46 3.25
4339 5250 7.202526 CGCAAATCTTTATCCAATAACATGGT 58.797 34.615 0.00 0.00 41.46 3.55
4340 5251 6.642131 CCGCAAATCTTTATCCAATAACATGG 59.358 38.462 0.00 0.00 42.12 3.66
4341 5252 7.167968 CACCGCAAATCTTTATCCAATAACATG 59.832 37.037 0.00 0.00 0.00 3.21
4342 5253 7.147915 ACACCGCAAATCTTTATCCAATAACAT 60.148 33.333 0.00 0.00 0.00 2.71
4343 5254 6.151985 ACACCGCAAATCTTTATCCAATAACA 59.848 34.615 0.00 0.00 0.00 2.41
4344 5255 6.560711 ACACCGCAAATCTTTATCCAATAAC 58.439 36.000 0.00 0.00 0.00 1.89
4345 5256 6.767524 ACACCGCAAATCTTTATCCAATAA 57.232 33.333 0.00 0.00 0.00 1.40
4346 5257 6.151985 ACAACACCGCAAATCTTTATCCAATA 59.848 34.615 0.00 0.00 0.00 1.90
4347 5258 5.047377 ACAACACCGCAAATCTTTATCCAAT 60.047 36.000 0.00 0.00 0.00 3.16
4348 5259 4.279671 ACAACACCGCAAATCTTTATCCAA 59.720 37.500 0.00 0.00 0.00 3.53
4349 5260 3.823873 ACAACACCGCAAATCTTTATCCA 59.176 39.130 0.00 0.00 0.00 3.41
4350 5261 4.434713 ACAACACCGCAAATCTTTATCC 57.565 40.909 0.00 0.00 0.00 2.59
4351 5262 6.027749 CCTTACAACACCGCAAATCTTTATC 58.972 40.000 0.00 0.00 0.00 1.75
4352 5263 5.105917 CCCTTACAACACCGCAAATCTTTAT 60.106 40.000 0.00 0.00 0.00 1.40
4353 5264 4.216687 CCCTTACAACACCGCAAATCTTTA 59.783 41.667 0.00 0.00 0.00 1.85
4354 5265 3.005367 CCCTTACAACACCGCAAATCTTT 59.995 43.478 0.00 0.00 0.00 2.52
4355 5266 2.556622 CCCTTACAACACCGCAAATCTT 59.443 45.455 0.00 0.00 0.00 2.40
4356 5267 2.159382 CCCTTACAACACCGCAAATCT 58.841 47.619 0.00 0.00 0.00 2.40
4357 5268 1.402325 GCCCTTACAACACCGCAAATC 60.402 52.381 0.00 0.00 0.00 2.17
4358 5269 0.601057 GCCCTTACAACACCGCAAAT 59.399 50.000 0.00 0.00 0.00 2.32
4359 5270 0.466555 AGCCCTTACAACACCGCAAA 60.467 50.000 0.00 0.00 0.00 3.68
4360 5271 0.887387 GAGCCCTTACAACACCGCAA 60.887 55.000 0.00 0.00 0.00 4.85
4361 5272 1.302192 GAGCCCTTACAACACCGCA 60.302 57.895 0.00 0.00 0.00 5.69
4362 5273 2.388232 CGAGCCCTTACAACACCGC 61.388 63.158 0.00 0.00 0.00 5.68
4363 5274 0.601841 AACGAGCCCTTACAACACCG 60.602 55.000 0.00 0.00 0.00 4.94
4364 5275 1.265905 CAAACGAGCCCTTACAACACC 59.734 52.381 0.00 0.00 0.00 4.16
4365 5276 1.265905 CCAAACGAGCCCTTACAACAC 59.734 52.381 0.00 0.00 0.00 3.32
4366 5277 1.134037 ACCAAACGAGCCCTTACAACA 60.134 47.619 0.00 0.00 0.00 3.33
4367 5278 1.601166 ACCAAACGAGCCCTTACAAC 58.399 50.000 0.00 0.00 0.00 3.32
4368 5279 2.872842 GCTACCAAACGAGCCCTTACAA 60.873 50.000 0.00 0.00 32.25 2.41
4369 5280 1.338389 GCTACCAAACGAGCCCTTACA 60.338 52.381 0.00 0.00 32.25 2.41
4370 5281 1.066358 AGCTACCAAACGAGCCCTTAC 60.066 52.381 0.00 0.00 39.65 2.34
4371 5282 1.272807 AGCTACCAAACGAGCCCTTA 58.727 50.000 0.00 0.00 39.65 2.69
4372 5283 1.207329 CTAGCTACCAAACGAGCCCTT 59.793 52.381 0.00 0.00 39.65 3.95
4373 5284 0.824759 CTAGCTACCAAACGAGCCCT 59.175 55.000 0.00 0.00 39.65 5.19
4374 5285 0.822164 TCTAGCTACCAAACGAGCCC 59.178 55.000 0.00 0.00 39.65 5.19
4375 5286 1.749634 TCTCTAGCTACCAAACGAGCC 59.250 52.381 0.00 0.00 39.65 4.70
4376 5287 3.719173 ATCTCTAGCTACCAAACGAGC 57.281 47.619 0.00 0.00 39.08 5.03
4377 5288 5.508200 AGAATCTCTAGCTACCAAACGAG 57.492 43.478 0.00 0.00 0.00 4.18
4378 5289 5.502153 GAGAATCTCTAGCTACCAAACGA 57.498 43.478 2.45 0.00 0.00 3.85
4390 5301 9.701891 CCAGAAAAATGGCCCAGAGAATCTCTA 62.702 44.444 13.02 0.00 37.03 2.43
4392 5303 6.897711 CCAGAAAAATGGCCCAGAGAATCTC 61.898 48.000 0.00 1.19 37.03 2.75
4393 5304 5.116747 CCAGAAAAATGGCCCAGAGAATCT 61.117 45.833 0.00 0.00 39.06 2.40
4394 5305 3.131755 CCAGAAAAATGGCCCAGAGAATC 59.868 47.826 0.00 0.00 32.48 2.52
4395 5306 3.102204 CCAGAAAAATGGCCCAGAGAAT 58.898 45.455 0.00 0.00 32.48 2.40
4396 5307 2.528564 CCAGAAAAATGGCCCAGAGAA 58.471 47.619 0.00 0.00 32.48 2.87
4397 5308 1.272648 CCCAGAAAAATGGCCCAGAGA 60.273 52.381 0.00 0.00 39.17 3.10
4398 5309 1.188863 CCCAGAAAAATGGCCCAGAG 58.811 55.000 0.00 0.00 39.17 3.35
4399 5310 0.904394 GCCCAGAAAAATGGCCCAGA 60.904 55.000 0.00 0.00 39.17 3.86
4400 5311 1.598517 GCCCAGAAAAATGGCCCAG 59.401 57.895 0.00 0.00 39.17 4.45
4401 5312 2.282039 CGCCCAGAAAAATGGCCCA 61.282 57.895 0.00 0.00 42.29 5.36
4402 5313 1.540435 TTCGCCCAGAAAAATGGCCC 61.540 55.000 0.00 0.00 42.29 5.80
4403 5314 0.320050 TTTCGCCCAGAAAAATGGCC 59.680 50.000 0.00 0.00 45.05 5.36
4404 5315 3.904586 TTTCGCCCAGAAAAATGGC 57.095 47.368 0.00 0.00 45.05 4.40
4415 5326 2.281970 ACCGAGGGTTTTTCGCCC 60.282 61.111 0.00 0.00 46.43 6.13
4416 5327 2.622962 CCACCGAGGGTTTTTCGCC 61.623 63.158 0.00 0.00 36.76 5.54
4417 5328 1.895231 ACCACCGAGGGTTTTTCGC 60.895 57.895 0.00 0.00 43.89 4.70
4418 5329 4.468007 ACCACCGAGGGTTTTTCG 57.532 55.556 0.00 0.00 43.89 3.46
4424 5335 2.484742 GTTAATGAACCACCGAGGGT 57.515 50.000 0.00 0.00 43.33 4.34
4434 5345 4.935205 GCAAATTTCCCCAGGTTAATGAAC 59.065 41.667 0.00 0.00 34.56 3.18
4435 5346 4.594920 TGCAAATTTCCCCAGGTTAATGAA 59.405 37.500 0.00 0.00 0.00 2.57
4436 5347 4.163427 TGCAAATTTCCCCAGGTTAATGA 58.837 39.130 0.00 0.00 0.00 2.57
4437 5348 4.550076 TGCAAATTTCCCCAGGTTAATG 57.450 40.909 0.00 0.00 0.00 1.90
4438 5349 4.019411 CCTTGCAAATTTCCCCAGGTTAAT 60.019 41.667 0.00 0.00 0.00 1.40
4439 5350 3.326297 CCTTGCAAATTTCCCCAGGTTAA 59.674 43.478 0.00 0.00 0.00 2.01
4440 5351 2.903135 CCTTGCAAATTTCCCCAGGTTA 59.097 45.455 0.00 0.00 0.00 2.85
4441 5352 1.699083 CCTTGCAAATTTCCCCAGGTT 59.301 47.619 0.00 0.00 0.00 3.50
4442 5353 1.351076 CCTTGCAAATTTCCCCAGGT 58.649 50.000 0.00 0.00 0.00 4.00
4443 5354 1.276138 GACCTTGCAAATTTCCCCAGG 59.724 52.381 0.00 0.00 0.00 4.45
4444 5355 1.969923 TGACCTTGCAAATTTCCCCAG 59.030 47.619 0.00 0.00 0.00 4.45
4445 5356 2.094100 TGACCTTGCAAATTTCCCCA 57.906 45.000 0.00 0.00 0.00 4.96
4446 5357 3.701205 AATGACCTTGCAAATTTCCCC 57.299 42.857 0.00 0.00 0.00 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.