Multiple sequence alignment - TraesCS1A01G223400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G223400 chr1A 100.000 2783 0 0 1 2783 393611319 393614101 0.000000e+00 5140.0
1 TraesCS1A01G223400 chr1D 94.946 1959 38 17 619 2548 313617060 313618986 0.000000e+00 3013.0
2 TraesCS1A01G223400 chr1D 97.727 44 1 0 587 630 313616849 313616892 2.970000e-10 76.8
3 TraesCS1A01G223400 chr1B 92.663 1949 61 30 619 2548 423823140 423825025 0.000000e+00 2732.0
4 TraesCS1A01G223400 chr1B 88.889 243 24 3 2529 2769 271819592 271819833 2.100000e-76 296.0
5 TraesCS1A01G223400 chr1B 94.444 54 1 1 511 564 423822252 423822303 6.390000e-12 82.4
6 TraesCS1A01G223400 chr4D 97.833 323 7 0 1 323 211359672 211359994 2.420000e-155 558.0
7 TraesCS1A01G223400 chr6D 96.594 323 11 0 1 323 20097639 20097961 1.130000e-148 536.0
8 TraesCS1A01G223400 chr6D 96.285 323 12 0 1 323 363177471 363177793 5.280000e-147 531.0
9 TraesCS1A01G223400 chr5D 96.594 323 11 0 1 323 285858868 285859190 1.130000e-148 536.0
10 TraesCS1A01G223400 chr5D 94.118 323 19 0 1 323 2249483 2249805 2.490000e-135 492.0
11 TraesCS1A01G223400 chrUn 95.666 323 13 1 1 323 104620656 104620335 4.110000e-143 518.0
12 TraesCS1A01G223400 chr7D 95.356 323 12 1 1 323 563301960 563302279 6.880000e-141 510.0
13 TraesCS1A01G223400 chr7D 89.540 239 25 0 2545 2783 426172195 426171957 1.250000e-78 303.0
14 TraesCS1A01G223400 chr5A 94.737 323 16 1 1 323 8639741 8640062 4.140000e-138 501.0
15 TraesCS1A01G223400 chr6A 94.427 323 16 2 1 323 481089458 481089138 1.930000e-136 496.0
16 TraesCS1A01G223400 chr6A 92.511 227 17 0 2545 2771 15492740 15492966 2.670000e-85 326.0
17 TraesCS1A01G223400 chr7A 91.189 227 20 0 2545 2771 564274006 564274232 2.690000e-80 309.0
18 TraesCS1A01G223400 chr3B 90.476 231 22 0 2548 2778 5747905 5747675 3.480000e-79 305.0
19 TraesCS1A01G223400 chr3B 90.749 227 21 0 2545 2771 331237172 331237398 1.250000e-78 303.0
20 TraesCS1A01G223400 chr2D 89.167 240 26 0 2544 2783 571203581 571203342 1.620000e-77 300.0
21 TraesCS1A01G223400 chr2D 89.121 239 26 0 2545 2783 315858988 315859226 5.830000e-77 298.0
22 TraesCS1A01G223400 chr2D 90.308 227 22 0 2545 2771 395940195 395940421 5.830000e-77 298.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G223400 chr1A 393611319 393614101 2782 False 5140.0 5140 100.0000 1 2783 1 chr1A.!!$F1 2782
1 TraesCS1A01G223400 chr1D 313616849 313618986 2137 False 1544.9 3013 96.3365 587 2548 2 chr1D.!!$F1 1961
2 TraesCS1A01G223400 chr1B 423822252 423825025 2773 False 1407.2 2732 93.5535 511 2548 2 chr1B.!!$F2 2037

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
233 234 0.032615 CACCTGCCTAGACTCCTCCT 60.033 60.0 0.0 0.0 0.0 3.69 F
400 401 0.238289 GAATGACACCGGCACACTTG 59.762 55.0 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1617 2469 1.204941 GTAGATGACGAAGCCACTGGT 59.795 52.381 0.0 0.0 0.0 4.00 R
1823 2675 2.506544 CGTTGATCCGCCATAGTCG 58.493 57.895 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.670592 TCGTCCACCGCGAGAAGA 60.671 61.111 8.23 6.48 36.19 2.87
23 24 2.202492 CGTCCACCGCGAGAAGAG 60.202 66.667 8.23 0.00 0.00 2.85
24 25 2.687805 CGTCCACCGCGAGAAGAGA 61.688 63.158 8.23 0.00 0.00 3.10
25 26 1.585006 GTCCACCGCGAGAAGAGAA 59.415 57.895 8.23 0.00 0.00 2.87
26 27 0.456995 GTCCACCGCGAGAAGAGAAG 60.457 60.000 8.23 0.00 0.00 2.85
27 28 0.608308 TCCACCGCGAGAAGAGAAGA 60.608 55.000 8.23 0.00 0.00 2.87
28 29 0.179150 CCACCGCGAGAAGAGAAGAG 60.179 60.000 8.23 0.00 0.00 2.85
29 30 0.179150 CACCGCGAGAAGAGAAGAGG 60.179 60.000 8.23 0.00 0.00 3.69
30 31 1.316706 ACCGCGAGAAGAGAAGAGGG 61.317 60.000 8.23 0.00 0.00 4.30
31 32 1.226831 CGCGAGAAGAGAAGAGGGC 60.227 63.158 0.00 0.00 0.00 5.19
32 33 1.226831 GCGAGAAGAGAAGAGGGCG 60.227 63.158 0.00 0.00 0.00 6.13
33 34 1.226831 CGAGAAGAGAAGAGGGCGC 60.227 63.158 0.00 0.00 0.00 6.53
34 35 1.142965 GAGAAGAGAAGAGGGCGCC 59.857 63.158 21.18 21.18 0.00 6.53
35 36 2.202810 GAAGAGAAGAGGGCGCCG 60.203 66.667 22.54 0.00 0.00 6.46
36 37 3.724914 GAAGAGAAGAGGGCGCCGG 62.725 68.421 22.54 0.00 0.00 6.13
60 61 4.168291 CTGCTCCGAGCCCCCTTC 62.168 72.222 17.81 0.00 41.51 3.46
62 63 4.168291 GCTCCGAGCCCCCTTCAG 62.168 72.222 9.42 0.00 34.48 3.02
63 64 2.364317 CTCCGAGCCCCCTTCAGA 60.364 66.667 0.00 0.00 0.00 3.27
64 65 1.990060 CTCCGAGCCCCCTTCAGAA 60.990 63.158 0.00 0.00 0.00 3.02
65 66 1.965754 CTCCGAGCCCCCTTCAGAAG 61.966 65.000 2.78 2.78 0.00 2.85
73 74 4.303257 CCTTCAGAAGGCGGAACC 57.697 61.111 16.65 0.00 42.78 3.62
74 75 1.374947 CCTTCAGAAGGCGGAACCA 59.625 57.895 16.65 0.00 42.78 3.67
75 76 0.955919 CCTTCAGAAGGCGGAACCAC 60.956 60.000 16.65 0.00 42.78 4.16
76 77 0.955919 CTTCAGAAGGCGGAACCACC 60.956 60.000 1.69 0.00 43.14 4.61
77 78 2.359975 CAGAAGGCGGAACCACCC 60.360 66.667 0.00 0.00 43.14 4.61
78 79 3.647771 AGAAGGCGGAACCACCCC 61.648 66.667 0.00 0.00 43.14 4.95
79 80 4.735358 GAAGGCGGAACCACCCCC 62.735 72.222 0.00 0.00 43.14 5.40
84 85 4.722700 CGGAACCACCCCCTGCAG 62.723 72.222 6.78 6.78 34.64 4.41
86 87 3.971702 GAACCACCCCCTGCAGCT 61.972 66.667 8.66 0.00 0.00 4.24
87 88 3.927481 GAACCACCCCCTGCAGCTC 62.927 68.421 8.66 0.00 0.00 4.09
102 103 4.735132 CTCCGGCACCGCGAAAGA 62.735 66.667 8.23 0.00 38.24 2.52
103 104 4.302509 TCCGGCACCGCGAAAGAA 62.303 61.111 8.23 0.00 38.24 2.52
104 105 3.788766 CCGGCACCGCGAAAGAAG 61.789 66.667 8.23 0.00 38.24 2.85
105 106 2.736995 CGGCACCGCGAAAGAAGA 60.737 61.111 8.23 0.00 0.00 2.87
106 107 2.314647 CGGCACCGCGAAAGAAGAA 61.315 57.895 8.23 0.00 0.00 2.52
107 108 1.635663 CGGCACCGCGAAAGAAGAAT 61.636 55.000 8.23 0.00 0.00 2.40
108 109 1.365699 GGCACCGCGAAAGAAGAATA 58.634 50.000 8.23 0.00 0.00 1.75
109 110 1.327764 GGCACCGCGAAAGAAGAATAG 59.672 52.381 8.23 0.00 0.00 1.73
110 111 2.268298 GCACCGCGAAAGAAGAATAGA 58.732 47.619 8.23 0.00 0.00 1.98
111 112 2.282820 GCACCGCGAAAGAAGAATAGAG 59.717 50.000 8.23 0.00 0.00 2.43
112 113 3.770666 CACCGCGAAAGAAGAATAGAGA 58.229 45.455 8.23 0.00 0.00 3.10
113 114 3.794028 CACCGCGAAAGAAGAATAGAGAG 59.206 47.826 8.23 0.00 0.00 3.20
114 115 2.792116 CCGCGAAAGAAGAATAGAGAGC 59.208 50.000 8.23 0.00 0.00 4.09
115 116 2.792116 CGCGAAAGAAGAATAGAGAGCC 59.208 50.000 0.00 0.00 0.00 4.70
116 117 2.792116 GCGAAAGAAGAATAGAGAGCCG 59.208 50.000 0.00 0.00 0.00 5.52
117 118 3.489398 GCGAAAGAAGAATAGAGAGCCGA 60.489 47.826 0.00 0.00 0.00 5.54
118 119 4.286910 CGAAAGAAGAATAGAGAGCCGAG 58.713 47.826 0.00 0.00 0.00 4.63
119 120 4.616953 GAAAGAAGAATAGAGAGCCGAGG 58.383 47.826 0.00 0.00 0.00 4.63
120 121 1.960689 AGAAGAATAGAGAGCCGAGGC 59.039 52.381 5.89 5.89 42.33 4.70
121 122 1.000394 GAAGAATAGAGAGCCGAGGCC 60.000 57.143 10.95 0.00 43.17 5.19
122 123 0.105964 AGAATAGAGAGCCGAGGCCA 60.106 55.000 10.95 0.00 43.17 5.36
123 124 0.032815 GAATAGAGAGCCGAGGCCAC 59.967 60.000 10.95 0.00 43.17 5.01
124 125 1.403687 AATAGAGAGCCGAGGCCACC 61.404 60.000 10.95 0.00 43.17 4.61
125 126 2.305314 ATAGAGAGCCGAGGCCACCT 62.305 60.000 10.95 5.77 43.17 4.00
126 127 4.154347 GAGAGCCGAGGCCACCTG 62.154 72.222 10.95 0.00 43.17 4.00
146 147 3.782443 CCGAACCCCCTCCCGAAG 61.782 72.222 0.00 0.00 0.00 3.79
164 165 1.595357 GGTAAGACCTCCACCACCG 59.405 63.158 0.00 0.00 34.73 4.94
165 166 1.595357 GTAAGACCTCCACCACCGG 59.405 63.158 0.00 0.00 0.00 5.28
166 167 0.901580 GTAAGACCTCCACCACCGGA 60.902 60.000 9.46 0.00 0.00 5.14
167 168 0.178926 TAAGACCTCCACCACCGGAA 60.179 55.000 9.46 0.00 33.65 4.30
168 169 1.765597 AAGACCTCCACCACCGGAAC 61.766 60.000 9.46 0.00 33.65 3.62
169 170 3.246880 ACCTCCACCACCGGAACC 61.247 66.667 9.46 0.00 33.65 3.62
170 171 2.928396 CCTCCACCACCGGAACCT 60.928 66.667 9.46 0.00 33.65 3.50
171 172 2.663196 CTCCACCACCGGAACCTC 59.337 66.667 9.46 0.00 33.65 3.85
172 173 3.296709 CTCCACCACCGGAACCTCG 62.297 68.421 9.46 0.00 33.65 4.63
173 174 3.622826 CCACCACCGGAACCTCGT 61.623 66.667 9.46 0.00 0.00 4.18
174 175 2.048503 CACCACCGGAACCTCGTC 60.049 66.667 9.46 0.00 0.00 4.20
175 176 3.308705 ACCACCGGAACCTCGTCC 61.309 66.667 9.46 0.00 0.00 4.79
176 177 2.995574 CCACCGGAACCTCGTCCT 60.996 66.667 9.46 0.00 35.31 3.85
177 178 2.261671 CACCGGAACCTCGTCCTG 59.738 66.667 9.46 0.00 35.31 3.86
178 179 2.116772 ACCGGAACCTCGTCCTGA 59.883 61.111 9.46 0.00 35.31 3.86
179 180 1.977544 ACCGGAACCTCGTCCTGAG 60.978 63.158 9.46 0.00 44.83 3.35
187 188 2.389386 CTCGTCCTGAGGAGAGTCG 58.611 63.158 0.00 1.46 43.80 4.18
188 189 0.108089 CTCGTCCTGAGGAGAGTCGA 60.108 60.000 0.00 6.60 43.80 4.20
189 190 0.391395 TCGTCCTGAGGAGAGTCGAC 60.391 60.000 7.70 7.70 29.39 4.20
190 191 1.697772 CGTCCTGAGGAGAGTCGACG 61.698 65.000 10.46 0.00 29.39 5.12
191 192 0.674269 GTCCTGAGGAGAGTCGACGT 60.674 60.000 10.46 0.81 29.39 4.34
192 193 0.673956 TCCTGAGGAGAGTCGACGTG 60.674 60.000 10.46 0.00 0.00 4.49
193 194 1.135731 CTGAGGAGAGTCGACGTGC 59.864 63.158 10.46 7.14 0.00 5.34
194 195 1.302383 CTGAGGAGAGTCGACGTGCT 61.302 60.000 13.45 13.45 0.00 4.40
195 196 1.135731 GAGGAGAGTCGACGTGCTG 59.864 63.158 17.41 0.00 0.00 4.41
196 197 1.579084 GAGGAGAGTCGACGTGCTGT 61.579 60.000 17.41 0.00 0.00 4.40
197 198 1.442857 GGAGAGTCGACGTGCTGTG 60.443 63.158 10.46 0.00 0.00 3.66
198 199 1.283181 GAGAGTCGACGTGCTGTGT 59.717 57.895 10.46 0.00 0.00 3.72
199 200 0.516001 GAGAGTCGACGTGCTGTGTA 59.484 55.000 10.46 0.00 0.00 2.90
200 201 1.130749 GAGAGTCGACGTGCTGTGTAT 59.869 52.381 10.46 0.00 0.00 2.29
201 202 1.135660 AGAGTCGACGTGCTGTGTATG 60.136 52.381 10.46 0.00 0.00 2.39
202 203 0.879090 AGTCGACGTGCTGTGTATGA 59.121 50.000 10.46 0.00 0.00 2.15
203 204 1.135660 AGTCGACGTGCTGTGTATGAG 60.136 52.381 10.46 0.00 0.00 2.90
204 205 1.135774 GTCGACGTGCTGTGTATGAGA 60.136 52.381 0.00 0.00 0.00 3.27
205 206 1.130561 TCGACGTGCTGTGTATGAGAG 59.869 52.381 0.00 0.00 0.00 3.20
206 207 1.795525 CGACGTGCTGTGTATGAGAGG 60.796 57.143 0.00 0.00 0.00 3.69
207 208 0.532573 ACGTGCTGTGTATGAGAGGG 59.467 55.000 0.00 0.00 0.00 4.30
208 209 0.817654 CGTGCTGTGTATGAGAGGGA 59.182 55.000 0.00 0.00 0.00 4.20
209 210 1.202348 CGTGCTGTGTATGAGAGGGAG 60.202 57.143 0.00 0.00 0.00 4.30
210 211 1.827969 GTGCTGTGTATGAGAGGGAGT 59.172 52.381 0.00 0.00 0.00 3.85
211 212 1.827344 TGCTGTGTATGAGAGGGAGTG 59.173 52.381 0.00 0.00 0.00 3.51
212 213 1.137872 GCTGTGTATGAGAGGGAGTGG 59.862 57.143 0.00 0.00 0.00 4.00
213 214 1.137872 CTGTGTATGAGAGGGAGTGGC 59.862 57.143 0.00 0.00 0.00 5.01
214 215 0.466124 GTGTATGAGAGGGAGTGGCC 59.534 60.000 0.00 0.00 0.00 5.36
215 216 0.042581 TGTATGAGAGGGAGTGGCCA 59.957 55.000 0.00 0.00 38.95 5.36
216 217 0.466124 GTATGAGAGGGAGTGGCCAC 59.534 60.000 29.22 29.22 38.95 5.01
217 218 0.691078 TATGAGAGGGAGTGGCCACC 60.691 60.000 32.29 22.27 38.95 4.61
218 219 2.284995 GAGAGGGAGTGGCCACCT 60.285 66.667 32.29 22.68 38.95 4.00
219 220 2.608988 AGAGGGAGTGGCCACCTG 60.609 66.667 32.29 0.00 38.95 4.00
220 221 4.416738 GAGGGAGTGGCCACCTGC 62.417 72.222 32.29 22.54 38.95 4.85
229 230 2.904131 GCCACCTGCCTAGACTCC 59.096 66.667 0.00 0.00 0.00 3.85
230 231 1.687493 GCCACCTGCCTAGACTCCT 60.687 63.158 0.00 0.00 0.00 3.69
231 232 1.681486 GCCACCTGCCTAGACTCCTC 61.681 65.000 0.00 0.00 0.00 3.71
232 233 1.045911 CCACCTGCCTAGACTCCTCC 61.046 65.000 0.00 0.00 0.00 4.30
233 234 0.032615 CACCTGCCTAGACTCCTCCT 60.033 60.000 0.00 0.00 0.00 3.69
234 235 0.260523 ACCTGCCTAGACTCCTCCTC 59.739 60.000 0.00 0.00 0.00 3.71
235 236 0.469144 CCTGCCTAGACTCCTCCTCC 60.469 65.000 0.00 0.00 0.00 4.30
236 237 0.555769 CTGCCTAGACTCCTCCTCCT 59.444 60.000 0.00 0.00 0.00 3.69
237 238 0.553819 TGCCTAGACTCCTCCTCCTC 59.446 60.000 0.00 0.00 0.00 3.71
238 239 0.850784 GCCTAGACTCCTCCTCCTCT 59.149 60.000 0.00 0.00 0.00 3.69
239 240 1.202891 GCCTAGACTCCTCCTCCTCTC 60.203 61.905 0.00 0.00 0.00 3.20
240 241 1.423921 CCTAGACTCCTCCTCCTCTCC 59.576 61.905 0.00 0.00 0.00 3.71
241 242 1.423921 CTAGACTCCTCCTCCTCTCCC 59.576 61.905 0.00 0.00 0.00 4.30
242 243 1.231928 GACTCCTCCTCCTCTCCCC 59.768 68.421 0.00 0.00 0.00 4.81
243 244 1.230819 ACTCCTCCTCCTCTCCCCT 60.231 63.158 0.00 0.00 0.00 4.79
244 245 1.232792 CTCCTCCTCCTCTCCCCTG 59.767 68.421 0.00 0.00 0.00 4.45
245 246 1.230650 TCCTCCTCCTCTCCCCTGA 60.231 63.158 0.00 0.00 0.00 3.86
246 247 1.075600 CCTCCTCCTCTCCCCTGAC 60.076 68.421 0.00 0.00 0.00 3.51
247 248 1.075600 CTCCTCCTCTCCCCTGACC 60.076 68.421 0.00 0.00 0.00 4.02
248 249 2.443016 CCTCCTCTCCCCTGACCG 60.443 72.222 0.00 0.00 0.00 4.79
249 250 2.684104 CTCCTCTCCCCTGACCGA 59.316 66.667 0.00 0.00 0.00 4.69
250 251 1.454847 CTCCTCTCCCCTGACCGAG 60.455 68.421 0.00 0.00 0.00 4.63
251 252 1.927569 CTCCTCTCCCCTGACCGAGA 61.928 65.000 0.00 0.00 34.07 4.04
252 253 1.231641 CCTCTCCCCTGACCGAGAT 59.768 63.158 0.00 0.00 34.70 2.75
253 254 0.825840 CCTCTCCCCTGACCGAGATC 60.826 65.000 0.00 0.00 34.70 2.75
254 255 1.152943 TCTCCCCTGACCGAGATCG 60.153 63.158 0.00 0.00 39.44 3.69
273 274 4.856801 CGATGCCCCAAGGACGGG 62.857 72.222 0.00 0.00 46.94 5.28
279 280 4.410400 CCCAAGGACGGGGCTCAC 62.410 72.222 0.00 0.00 43.21 3.51
280 281 3.636231 CCAAGGACGGGGCTCACA 61.636 66.667 0.00 0.00 0.00 3.58
281 282 2.046892 CAAGGACGGGGCTCACAG 60.047 66.667 0.00 0.00 0.00 3.66
282 283 4.021925 AAGGACGGGGCTCACAGC 62.022 66.667 0.00 0.00 41.46 4.40
284 285 4.101448 GGACGGGGCTCACAGCAT 62.101 66.667 0.00 0.00 44.75 3.79
285 286 2.512515 GACGGGGCTCACAGCATC 60.513 66.667 0.00 0.00 44.75 3.91
286 287 4.101448 ACGGGGCTCACAGCATCC 62.101 66.667 0.00 0.00 44.75 3.51
287 288 3.790437 CGGGGCTCACAGCATCCT 61.790 66.667 0.00 0.00 44.75 3.24
288 289 2.191641 GGGGCTCACAGCATCCTC 59.808 66.667 0.00 0.00 44.75 3.71
289 290 2.673200 GGGGCTCACAGCATCCTCA 61.673 63.158 0.00 0.00 44.75 3.86
290 291 1.300963 GGGCTCACAGCATCCTCAA 59.699 57.895 0.00 0.00 44.75 3.02
291 292 0.322816 GGGCTCACAGCATCCTCAAA 60.323 55.000 0.00 0.00 44.75 2.69
292 293 1.538047 GGCTCACAGCATCCTCAAAA 58.462 50.000 0.00 0.00 44.75 2.44
293 294 2.097825 GGCTCACAGCATCCTCAAAAT 58.902 47.619 0.00 0.00 44.75 1.82
294 295 2.098770 GGCTCACAGCATCCTCAAAATC 59.901 50.000 0.00 0.00 44.75 2.17
295 296 2.098770 GCTCACAGCATCCTCAAAATCC 59.901 50.000 0.00 0.00 41.89 3.01
296 297 3.349927 CTCACAGCATCCTCAAAATCCA 58.650 45.455 0.00 0.00 0.00 3.41
297 298 3.760151 CTCACAGCATCCTCAAAATCCAA 59.240 43.478 0.00 0.00 0.00 3.53
298 299 4.151121 TCACAGCATCCTCAAAATCCAAA 58.849 39.130 0.00 0.00 0.00 3.28
299 300 4.219070 TCACAGCATCCTCAAAATCCAAAG 59.781 41.667 0.00 0.00 0.00 2.77
300 301 3.056322 ACAGCATCCTCAAAATCCAAAGC 60.056 43.478 0.00 0.00 0.00 3.51
301 302 3.056393 CAGCATCCTCAAAATCCAAAGCA 60.056 43.478 0.00 0.00 0.00 3.91
302 303 3.194968 AGCATCCTCAAAATCCAAAGCAG 59.805 43.478 0.00 0.00 0.00 4.24
303 304 3.194116 GCATCCTCAAAATCCAAAGCAGA 59.806 43.478 0.00 0.00 0.00 4.26
304 305 4.142004 GCATCCTCAAAATCCAAAGCAGAT 60.142 41.667 0.00 0.00 0.00 2.90
305 306 5.068198 GCATCCTCAAAATCCAAAGCAGATA 59.932 40.000 0.00 0.00 0.00 1.98
306 307 6.406177 GCATCCTCAAAATCCAAAGCAGATAA 60.406 38.462 0.00 0.00 0.00 1.75
307 308 6.515272 TCCTCAAAATCCAAAGCAGATAAC 57.485 37.500 0.00 0.00 0.00 1.89
308 309 5.123820 TCCTCAAAATCCAAAGCAGATAACG 59.876 40.000 0.00 0.00 0.00 3.18
309 310 4.732784 TCAAAATCCAAAGCAGATAACGC 58.267 39.130 0.00 0.00 0.00 4.84
310 311 3.405170 AAATCCAAAGCAGATAACGCG 57.595 42.857 3.53 3.53 0.00 6.01
311 312 2.024176 ATCCAAAGCAGATAACGCGT 57.976 45.000 5.58 5.58 0.00 6.01
312 313 1.075542 TCCAAAGCAGATAACGCGTG 58.924 50.000 14.98 0.00 0.00 5.34
313 314 0.521242 CCAAAGCAGATAACGCGTGC 60.521 55.000 14.98 12.20 37.48 5.34
315 316 0.721718 AAAGCAGATAACGCGTGCTC 59.278 50.000 19.64 15.80 46.86 4.26
316 317 0.389817 AAGCAGATAACGCGTGCTCA 60.390 50.000 19.64 3.75 46.86 4.26
317 318 0.389817 AGCAGATAACGCGTGCTCAA 60.390 50.000 14.98 0.00 44.28 3.02
318 319 0.442310 GCAGATAACGCGTGCTCAAA 59.558 50.000 14.98 0.00 34.23 2.69
319 320 1.136085 GCAGATAACGCGTGCTCAAAA 60.136 47.619 14.98 0.00 34.23 2.44
320 321 2.664424 GCAGATAACGCGTGCTCAAAAA 60.664 45.455 14.98 0.00 34.23 1.94
321 322 2.902484 CAGATAACGCGTGCTCAAAAAC 59.098 45.455 14.98 0.00 0.00 2.43
322 323 2.095919 AGATAACGCGTGCTCAAAAACC 60.096 45.455 14.98 0.00 0.00 3.27
323 324 1.015109 TAACGCGTGCTCAAAAACCA 58.985 45.000 14.98 0.00 0.00 3.67
324 325 0.248458 AACGCGTGCTCAAAAACCAG 60.248 50.000 14.98 0.00 0.00 4.00
325 326 1.370414 CGCGTGCTCAAAAACCAGG 60.370 57.895 0.00 0.00 0.00 4.45
326 327 1.733526 GCGTGCTCAAAAACCAGGT 59.266 52.632 0.00 0.00 0.00 4.00
327 328 0.948678 GCGTGCTCAAAAACCAGGTA 59.051 50.000 0.00 0.00 0.00 3.08
328 329 1.335496 GCGTGCTCAAAAACCAGGTAA 59.665 47.619 0.00 0.00 0.00 2.85
329 330 2.857104 GCGTGCTCAAAAACCAGGTAAC 60.857 50.000 0.00 0.00 0.00 2.50
347 348 5.934921 GGTAACTTTTACATCCAAACTCCG 58.065 41.667 0.00 0.00 0.00 4.63
348 349 5.471116 GGTAACTTTTACATCCAAACTCCGT 59.529 40.000 0.00 0.00 0.00 4.69
349 350 6.016860 GGTAACTTTTACATCCAAACTCCGTT 60.017 38.462 0.00 0.00 0.00 4.44
350 351 6.459670 AACTTTTACATCCAAACTCCGTTT 57.540 33.333 0.00 0.00 36.05 3.60
351 352 6.459670 ACTTTTACATCCAAACTCCGTTTT 57.540 33.333 0.00 0.00 33.10 2.43
352 353 6.869695 ACTTTTACATCCAAACTCCGTTTTT 58.130 32.000 0.00 0.00 33.10 1.94
353 354 7.998580 ACTTTTACATCCAAACTCCGTTTTTA 58.001 30.769 0.00 0.00 33.10 1.52
354 355 8.468399 ACTTTTACATCCAAACTCCGTTTTTAA 58.532 29.630 0.00 0.00 33.10 1.52
355 356 9.471084 CTTTTACATCCAAACTCCGTTTTTAAT 57.529 29.630 0.00 0.00 33.10 1.40
356 357 8.804688 TTTACATCCAAACTCCGTTTTTAATG 57.195 30.769 0.00 0.00 33.10 1.90
357 358 6.399639 ACATCCAAACTCCGTTTTTAATGT 57.600 33.333 0.00 0.00 33.10 2.71
358 359 6.811954 ACATCCAAACTCCGTTTTTAATGTT 58.188 32.000 0.00 0.00 33.10 2.71
359 360 6.699642 ACATCCAAACTCCGTTTTTAATGTTG 59.300 34.615 0.00 0.00 33.10 3.33
360 361 5.593010 TCCAAACTCCGTTTTTAATGTTGG 58.407 37.500 0.00 0.00 33.10 3.77
361 362 5.127356 TCCAAACTCCGTTTTTAATGTTGGT 59.873 36.000 0.00 0.00 33.10 3.67
362 363 5.233263 CCAAACTCCGTTTTTAATGTTGGTG 59.767 40.000 0.00 0.00 33.10 4.17
363 364 4.577834 ACTCCGTTTTTAATGTTGGTGG 57.422 40.909 0.00 0.00 0.00 4.61
364 365 3.319689 ACTCCGTTTTTAATGTTGGTGGG 59.680 43.478 0.00 0.00 0.00 4.61
365 366 2.036089 TCCGTTTTTAATGTTGGTGGGC 59.964 45.455 0.00 0.00 0.00 5.36
366 367 2.036604 CCGTTTTTAATGTTGGTGGGCT 59.963 45.455 0.00 0.00 0.00 5.19
367 368 3.313690 CGTTTTTAATGTTGGTGGGCTC 58.686 45.455 0.00 0.00 0.00 4.70
368 369 3.313690 GTTTTTAATGTTGGTGGGCTCG 58.686 45.455 0.00 0.00 0.00 5.03
369 370 2.279935 TTTAATGTTGGTGGGCTCGT 57.720 45.000 0.00 0.00 0.00 4.18
370 371 2.279935 TTAATGTTGGTGGGCTCGTT 57.720 45.000 0.00 0.00 0.00 3.85
371 372 1.816074 TAATGTTGGTGGGCTCGTTC 58.184 50.000 0.00 0.00 0.00 3.95
372 373 1.234615 AATGTTGGTGGGCTCGTTCG 61.235 55.000 0.00 0.00 0.00 3.95
373 374 2.029964 GTTGGTGGGCTCGTTCGA 59.970 61.111 0.00 0.00 0.00 3.71
374 375 1.595929 GTTGGTGGGCTCGTTCGAA 60.596 57.895 0.00 0.00 0.00 3.71
375 376 0.953960 GTTGGTGGGCTCGTTCGAAT 60.954 55.000 0.00 0.00 0.00 3.34
376 377 0.672401 TTGGTGGGCTCGTTCGAATC 60.672 55.000 0.00 0.00 0.00 2.52
377 378 1.079405 GGTGGGCTCGTTCGAATCA 60.079 57.895 0.00 0.00 0.00 2.57
378 379 0.462047 GGTGGGCTCGTTCGAATCAT 60.462 55.000 0.00 0.00 0.00 2.45
379 380 1.202486 GGTGGGCTCGTTCGAATCATA 60.202 52.381 0.00 0.00 0.00 2.15
380 381 1.859080 GTGGGCTCGTTCGAATCATAC 59.141 52.381 0.00 0.00 0.00 2.39
381 382 1.129326 GGGCTCGTTCGAATCATACG 58.871 55.000 0.00 0.00 36.67 3.06
382 383 1.268896 GGGCTCGTTCGAATCATACGA 60.269 52.381 0.00 5.00 41.47 3.43
383 384 2.456989 GGCTCGTTCGAATCATACGAA 58.543 47.619 10.19 0.00 42.87 3.85
391 392 3.368495 TCGAATCATACGAATGACACCG 58.632 45.455 0.00 0.00 44.79 4.94
392 393 2.471370 CGAATCATACGAATGACACCGG 59.529 50.000 0.00 0.00 44.79 5.28
393 394 1.865865 ATCATACGAATGACACCGGC 58.134 50.000 0.00 0.00 44.79 6.13
394 395 0.533032 TCATACGAATGACACCGGCA 59.467 50.000 0.00 0.00 37.20 5.69
395 396 0.650512 CATACGAATGACACCGGCAC 59.349 55.000 0.00 0.00 34.84 5.01
396 397 0.248012 ATACGAATGACACCGGCACA 59.752 50.000 0.00 0.00 0.00 4.57
397 398 0.668096 TACGAATGACACCGGCACAC 60.668 55.000 0.00 0.00 0.00 3.82
398 399 1.667830 CGAATGACACCGGCACACT 60.668 57.895 0.00 0.00 0.00 3.55
399 400 1.227999 CGAATGACACCGGCACACTT 61.228 55.000 0.00 0.00 0.00 3.16
400 401 0.238289 GAATGACACCGGCACACTTG 59.762 55.000 0.00 0.00 0.00 3.16
401 402 0.465460 AATGACACCGGCACACTTGT 60.465 50.000 0.00 0.00 0.00 3.16
402 403 0.394938 ATGACACCGGCACACTTGTA 59.605 50.000 0.00 0.00 0.00 2.41
403 404 0.249699 TGACACCGGCACACTTGTAG 60.250 55.000 0.00 0.00 0.00 2.74
404 405 0.249741 GACACCGGCACACTTGTAGT 60.250 55.000 0.00 0.00 0.00 2.73
405 406 1.000060 GACACCGGCACACTTGTAGTA 60.000 52.381 0.00 0.00 0.00 1.82
406 407 1.621814 ACACCGGCACACTTGTAGTAT 59.378 47.619 0.00 0.00 0.00 2.12
407 408 2.268298 CACCGGCACACTTGTAGTATC 58.732 52.381 0.00 0.00 0.00 2.24
408 409 1.897133 ACCGGCACACTTGTAGTATCA 59.103 47.619 0.00 0.00 0.00 2.15
409 410 2.500098 ACCGGCACACTTGTAGTATCAT 59.500 45.455 0.00 0.00 0.00 2.45
410 411 3.702548 ACCGGCACACTTGTAGTATCATA 59.297 43.478 0.00 0.00 0.00 2.15
411 412 4.344102 ACCGGCACACTTGTAGTATCATAT 59.656 41.667 0.00 0.00 0.00 1.78
412 413 5.163343 ACCGGCACACTTGTAGTATCATATT 60.163 40.000 0.00 0.00 0.00 1.28
413 414 5.758296 CCGGCACACTTGTAGTATCATATTT 59.242 40.000 0.00 0.00 0.00 1.40
414 415 6.260050 CCGGCACACTTGTAGTATCATATTTT 59.740 38.462 0.00 0.00 0.00 1.82
415 416 7.125755 CGGCACACTTGTAGTATCATATTTTG 58.874 38.462 0.00 0.00 0.00 2.44
416 417 7.011016 CGGCACACTTGTAGTATCATATTTTGA 59.989 37.037 0.00 0.00 39.12 2.69
417 418 8.840321 GGCACACTTGTAGTATCATATTTTGAT 58.160 33.333 0.00 0.00 46.86 2.57
493 494 9.998106 AATATAGCATTATTAAACCGAGTGACT 57.002 29.630 0.00 0.00 0.00 3.41
494 495 9.998106 ATATAGCATTATTAAACCGAGTGACTT 57.002 29.630 0.00 0.00 0.00 3.01
495 496 6.663944 AGCATTATTAAACCGAGTGACTTC 57.336 37.500 0.00 0.00 0.00 3.01
496 497 6.170506 AGCATTATTAAACCGAGTGACTTCA 58.829 36.000 0.00 0.00 0.00 3.02
497 498 6.823689 AGCATTATTAAACCGAGTGACTTCAT 59.176 34.615 0.00 0.00 0.00 2.57
498 499 7.336931 AGCATTATTAAACCGAGTGACTTCATT 59.663 33.333 0.00 0.00 0.00 2.57
499 500 7.968405 GCATTATTAAACCGAGTGACTTCATTT 59.032 33.333 0.00 0.00 0.00 2.32
507 508 7.057149 ACCGAGTGACTTCATTTATAAAACG 57.943 36.000 1.21 0.00 0.00 3.60
508 509 6.091713 ACCGAGTGACTTCATTTATAAAACGG 59.908 38.462 1.21 0.00 39.13 4.44
509 510 6.456449 CCGAGTGACTTCATTTATAAAACGGG 60.456 42.308 1.21 0.00 0.00 5.28
547 548 7.678947 CTTCAAATCGAAGCCCATAATCTAT 57.321 36.000 0.00 0.00 44.57 1.98
548 549 7.439157 TTCAAATCGAAGCCCATAATCTATG 57.561 36.000 0.00 0.00 35.94 2.23
549 550 5.412594 TCAAATCGAAGCCCATAATCTATGC 59.587 40.000 0.00 0.00 34.85 3.14
550 551 3.334583 TCGAAGCCCATAATCTATGCC 57.665 47.619 0.00 0.00 34.85 4.40
551 552 2.027192 TCGAAGCCCATAATCTATGCCC 60.027 50.000 0.00 0.00 34.85 5.36
552 553 2.359900 GAAGCCCATAATCTATGCCCG 58.640 52.381 0.00 0.00 34.85 6.13
553 554 1.362224 AGCCCATAATCTATGCCCGT 58.638 50.000 0.00 0.00 34.85 5.28
554 555 1.705186 AGCCCATAATCTATGCCCGTT 59.295 47.619 0.00 0.00 34.85 4.44
555 556 2.084546 GCCCATAATCTATGCCCGTTC 58.915 52.381 0.00 0.00 34.85 3.95
556 557 2.711542 CCCATAATCTATGCCCGTTCC 58.288 52.381 0.00 0.00 34.85 3.62
557 558 2.305927 CCCATAATCTATGCCCGTTCCT 59.694 50.000 0.00 0.00 34.85 3.36
558 559 3.338249 CCATAATCTATGCCCGTTCCTG 58.662 50.000 0.00 0.00 34.85 3.86
559 560 3.244561 CCATAATCTATGCCCGTTCCTGT 60.245 47.826 0.00 0.00 34.85 4.00
560 561 2.332063 AATCTATGCCCGTTCCTGTG 57.668 50.000 0.00 0.00 0.00 3.66
561 562 1.496060 ATCTATGCCCGTTCCTGTGA 58.504 50.000 0.00 0.00 0.00 3.58
562 563 0.824109 TCTATGCCCGTTCCTGTGAG 59.176 55.000 0.00 0.00 0.00 3.51
563 564 0.537188 CTATGCCCGTTCCTGTGAGT 59.463 55.000 0.00 0.00 0.00 3.41
564 565 1.754803 CTATGCCCGTTCCTGTGAGTA 59.245 52.381 0.00 0.00 0.00 2.59
565 566 1.204146 ATGCCCGTTCCTGTGAGTAT 58.796 50.000 0.00 0.00 0.00 2.12
566 567 0.981183 TGCCCGTTCCTGTGAGTATT 59.019 50.000 0.00 0.00 0.00 1.89
567 568 1.349688 TGCCCGTTCCTGTGAGTATTT 59.650 47.619 0.00 0.00 0.00 1.40
568 569 2.224670 TGCCCGTTCCTGTGAGTATTTT 60.225 45.455 0.00 0.00 0.00 1.82
569 570 2.817844 GCCCGTTCCTGTGAGTATTTTT 59.182 45.455 0.00 0.00 0.00 1.94
682 1520 4.561731 GCGATGCGATACCCTCTC 57.438 61.111 0.00 0.00 0.00 3.20
712 1550 2.609427 TCATACCTGCATGAGAGCAC 57.391 50.000 0.00 0.00 40.11 4.40
871 1719 3.420482 CACTCCATCCCCACCCCC 61.420 72.222 0.00 0.00 0.00 5.40
1043 1895 2.403252 GTGCTTGCCACTACCACTAT 57.597 50.000 0.00 0.00 41.35 2.12
1838 2694 1.106944 TGAGCGACTATGGCGGATCA 61.107 55.000 0.00 0.00 35.00 2.92
1849 2705 4.596180 CGGATCAACGCATGCGGC 62.596 66.667 39.95 23.54 44.69 6.53
1850 2706 3.507924 GGATCAACGCATGCGGCA 61.508 61.111 39.95 24.92 45.17 5.69
1851 2707 2.484662 GATCAACGCATGCGGCAA 59.515 55.556 39.95 25.66 45.17 4.52
1852 2708 1.584483 GATCAACGCATGCGGCAAG 60.584 57.895 39.95 26.23 45.17 4.01
1853 2709 3.688475 ATCAACGCATGCGGCAAGC 62.688 57.895 39.95 19.35 45.17 4.01
2300 3161 9.620259 AAACTTCAGTCTACATTTCTTTCTTCT 57.380 29.630 0.00 0.00 0.00 2.85
2301 3162 9.620259 AACTTCAGTCTACATTTCTTTCTTCTT 57.380 29.630 0.00 0.00 0.00 2.52
2347 3208 9.985318 CTATTTTTGCTGTCTGAAAAGAGATAG 57.015 33.333 0.00 0.00 34.98 2.08
2348 3209 7.807977 TTTTTGCTGTCTGAAAAGAGATAGT 57.192 32.000 0.00 0.00 34.53 2.12
2349 3210 7.807977 TTTTGCTGTCTGAAAAGAGATAGTT 57.192 32.000 0.00 0.00 34.53 2.24
2350 3211 7.807977 TTTGCTGTCTGAAAAGAGATAGTTT 57.192 32.000 0.00 0.00 34.53 2.66
2455 3316 1.067283 TGTGCAGTTTTGTGTGGTTGG 60.067 47.619 0.00 0.00 0.00 3.77
2504 3365 6.847792 CACATATATGTTGCGTGTGAGAATTC 59.152 38.462 15.85 0.00 41.93 2.17
2548 3409 7.224753 TGAACGGAGCATCTTCATTATTTACTC 59.775 37.037 0.00 0.00 33.73 2.59
2549 3410 5.992217 ACGGAGCATCTTCATTATTTACTCC 59.008 40.000 0.00 0.00 38.22 3.85
2550 3411 5.409826 CGGAGCATCTTCATTATTTACTCCC 59.590 44.000 0.00 0.00 38.33 4.30
2551 3412 6.538263 GGAGCATCTTCATTATTTACTCCCT 58.462 40.000 0.00 0.00 36.08 4.20
2552 3413 6.652900 GGAGCATCTTCATTATTTACTCCCTC 59.347 42.308 0.00 0.00 36.08 4.30
2553 3414 7.385894 AGCATCTTCATTATTTACTCCCTCT 57.614 36.000 0.00 0.00 0.00 3.69
2554 3415 7.222872 AGCATCTTCATTATTTACTCCCTCTG 58.777 38.462 0.00 0.00 0.00 3.35
2555 3416 6.995091 GCATCTTCATTATTTACTCCCTCTGT 59.005 38.462 0.00 0.00 0.00 3.41
2556 3417 7.500559 GCATCTTCATTATTTACTCCCTCTGTT 59.499 37.037 0.00 0.00 0.00 3.16
2557 3418 9.401058 CATCTTCATTATTTACTCCCTCTGTTT 57.599 33.333 0.00 0.00 0.00 2.83
2558 3419 9.981460 ATCTTCATTATTTACTCCCTCTGTTTT 57.019 29.630 0.00 0.00 0.00 2.43
2559 3420 9.449719 TCTTCATTATTTACTCCCTCTGTTTTC 57.550 33.333 0.00 0.00 0.00 2.29
2560 3421 9.231297 CTTCATTATTTACTCCCTCTGTTTTCA 57.769 33.333 0.00 0.00 0.00 2.69
2561 3422 9.753674 TTCATTATTTACTCCCTCTGTTTTCAT 57.246 29.630 0.00 0.00 0.00 2.57
2562 3423 9.753674 TCATTATTTACTCCCTCTGTTTTCATT 57.246 29.630 0.00 0.00 0.00 2.57
2567 3428 8.617290 TTTACTCCCTCTGTTTTCATTTACTC 57.383 34.615 0.00 0.00 0.00 2.59
2568 3429 5.561679 ACTCCCTCTGTTTTCATTTACTCC 58.438 41.667 0.00 0.00 0.00 3.85
2569 3430 5.073144 ACTCCCTCTGTTTTCATTTACTCCA 59.927 40.000 0.00 0.00 0.00 3.86
2570 3431 5.313712 TCCCTCTGTTTTCATTTACTCCAC 58.686 41.667 0.00 0.00 0.00 4.02
2571 3432 5.070001 CCCTCTGTTTTCATTTACTCCACA 58.930 41.667 0.00 0.00 0.00 4.17
2572 3433 5.711976 CCCTCTGTTTTCATTTACTCCACAT 59.288 40.000 0.00 0.00 0.00 3.21
2573 3434 6.884295 CCCTCTGTTTTCATTTACTCCACATA 59.116 38.462 0.00 0.00 0.00 2.29
2574 3435 7.557719 CCCTCTGTTTTCATTTACTCCACATAT 59.442 37.037 0.00 0.00 0.00 1.78
2575 3436 8.960591 CCTCTGTTTTCATTTACTCCACATATT 58.039 33.333 0.00 0.00 0.00 1.28
2584 3445 9.817809 TCATTTACTCCACATATTAGAGTTGAC 57.182 33.333 4.78 0.00 41.09 3.18
2585 3446 9.823647 CATTTACTCCACATATTAGAGTTGACT 57.176 33.333 4.78 0.00 41.09 3.41
2590 3451 9.036980 ACTCCACATATTAGAGTTGACTAAAGT 57.963 33.333 0.00 0.00 37.60 2.66
2591 3452 9.522804 CTCCACATATTAGAGTTGACTAAAGTC 57.477 37.037 3.08 3.08 44.97 3.01
2619 3480 8.762481 ACTTCCTAAAGTTTGACCAAGTTTAT 57.238 30.769 0.00 0.00 43.28 1.40
2620 3481 9.856162 ACTTCCTAAAGTTTGACCAAGTTTATA 57.144 29.630 0.00 0.00 43.28 0.98
2673 3534 8.635765 AAATTTGTATGATGTGGAAGTACAGT 57.364 30.769 0.00 0.00 33.44 3.55
2674 3535 7.849804 ATTTGTATGATGTGGAAGTACAGTC 57.150 36.000 0.00 0.00 33.44 3.51
2675 3536 5.993748 TGTATGATGTGGAAGTACAGTCA 57.006 39.130 0.00 0.00 33.44 3.41
2676 3537 6.353404 TGTATGATGTGGAAGTACAGTCAA 57.647 37.500 0.00 0.00 33.44 3.18
2677 3538 6.946340 TGTATGATGTGGAAGTACAGTCAAT 58.054 36.000 0.00 0.00 33.44 2.57
2678 3539 8.073467 TGTATGATGTGGAAGTACAGTCAATA 57.927 34.615 0.00 0.00 33.44 1.90
2679 3540 8.536175 TGTATGATGTGGAAGTACAGTCAATAA 58.464 33.333 0.00 0.00 33.44 1.40
2680 3541 9.547753 GTATGATGTGGAAGTACAGTCAATAAT 57.452 33.333 0.00 0.00 33.44 1.28
2683 3544 9.952030 TGATGTGGAAGTACAGTCAATAATTAA 57.048 29.630 0.00 0.00 33.44 1.40
2759 3620 8.108716 CTTTGTCAAAGTTTAGAAAGCTTGAC 57.891 34.615 15.93 15.72 39.15 3.18
2760 3621 7.391148 TTGTCAAAGTTTAGAAAGCTTGACT 57.609 32.000 19.71 5.67 39.29 3.41
2761 3622 7.391148 TGTCAAAGTTTAGAAAGCTTGACTT 57.609 32.000 19.71 3.36 39.29 3.01
2782 3643 6.548441 CTTTGACCAAAGTTTATACGTGGA 57.452 37.500 12.91 0.00 42.02 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 0.456995 CTTCTCTTCTCGCGGTGGAC 60.457 60.000 6.13 0.00 0.00 4.02
8 9 0.608308 TCTTCTCTTCTCGCGGTGGA 60.608 55.000 6.13 0.00 0.00 4.02
9 10 0.179150 CTCTTCTCTTCTCGCGGTGG 60.179 60.000 6.13 0.00 0.00 4.61
10 11 0.179150 CCTCTTCTCTTCTCGCGGTG 60.179 60.000 6.13 0.00 0.00 4.94
11 12 1.316706 CCCTCTTCTCTTCTCGCGGT 61.317 60.000 6.13 0.00 0.00 5.68
12 13 1.435515 CCCTCTTCTCTTCTCGCGG 59.564 63.158 6.13 0.00 0.00 6.46
13 14 1.226831 GCCCTCTTCTCTTCTCGCG 60.227 63.158 0.00 0.00 0.00 5.87
14 15 1.226831 CGCCCTCTTCTCTTCTCGC 60.227 63.158 0.00 0.00 0.00 5.03
15 16 1.226831 GCGCCCTCTTCTCTTCTCG 60.227 63.158 0.00 0.00 0.00 4.04
16 17 1.142965 GGCGCCCTCTTCTCTTCTC 59.857 63.158 18.11 0.00 0.00 2.87
17 18 2.716017 CGGCGCCCTCTTCTCTTCT 61.716 63.158 23.46 0.00 0.00 2.85
18 19 2.202810 CGGCGCCCTCTTCTCTTC 60.203 66.667 23.46 0.00 0.00 2.87
19 20 3.775654 CCGGCGCCCTCTTCTCTT 61.776 66.667 23.46 0.00 0.00 2.85
43 44 4.168291 GAAGGGGGCTCGGAGCAG 62.168 72.222 29.33 0.00 44.75 4.24
45 46 4.168291 CTGAAGGGGGCTCGGAGC 62.168 72.222 21.57 21.57 41.46 4.70
46 47 1.965754 CTTCTGAAGGGGGCTCGGAG 61.966 65.000 9.57 0.00 30.00 4.63
47 48 1.990060 CTTCTGAAGGGGGCTCGGA 60.990 63.158 9.57 0.00 0.00 4.55
48 49 2.586792 CTTCTGAAGGGGGCTCGG 59.413 66.667 9.57 0.00 0.00 4.63
49 50 2.586792 CCTTCTGAAGGGGGCTCG 59.413 66.667 25.62 1.26 45.27 5.03
57 58 0.955919 GGTGGTTCCGCCTTCTGAAG 60.956 60.000 13.54 10.46 38.35 3.02
58 59 1.072505 GGTGGTTCCGCCTTCTGAA 59.927 57.895 13.54 0.00 38.35 3.02
59 60 2.747686 GGTGGTTCCGCCTTCTGA 59.252 61.111 13.54 0.00 38.35 3.27
60 61 2.359975 GGGTGGTTCCGCCTTCTG 60.360 66.667 19.07 0.00 38.35 3.02
61 62 3.647771 GGGGTGGTTCCGCCTTCT 61.648 66.667 19.07 0.00 42.45 2.85
67 68 4.722700 CTGCAGGGGGTGGTTCCG 62.723 72.222 5.57 0.00 37.00 4.30
69 70 3.927481 GAGCTGCAGGGGGTGGTTC 62.927 68.421 17.12 0.00 0.00 3.62
70 71 3.971702 GAGCTGCAGGGGGTGGTT 61.972 66.667 17.12 0.00 0.00 3.67
85 86 4.735132 TCTTTCGCGGTGCCGGAG 62.735 66.667 5.05 0.00 40.19 4.63
86 87 4.302509 TTCTTTCGCGGTGCCGGA 62.303 61.111 5.05 5.35 40.19 5.14
87 88 3.788766 CTTCTTTCGCGGTGCCGG 61.789 66.667 6.13 0.00 40.19 6.13
88 89 1.635663 ATTCTTCTTTCGCGGTGCCG 61.636 55.000 6.13 6.22 43.09 5.69
89 90 1.327764 CTATTCTTCTTTCGCGGTGCC 59.672 52.381 6.13 0.00 0.00 5.01
90 91 2.268298 TCTATTCTTCTTTCGCGGTGC 58.732 47.619 6.13 0.00 0.00 5.01
91 92 3.770666 TCTCTATTCTTCTTTCGCGGTG 58.229 45.455 6.13 0.00 0.00 4.94
92 93 3.735514 GCTCTCTATTCTTCTTTCGCGGT 60.736 47.826 6.13 0.00 0.00 5.68
93 94 2.792116 GCTCTCTATTCTTCTTTCGCGG 59.208 50.000 6.13 0.00 0.00 6.46
94 95 2.792116 GGCTCTCTATTCTTCTTTCGCG 59.208 50.000 0.00 0.00 0.00 5.87
95 96 2.792116 CGGCTCTCTATTCTTCTTTCGC 59.208 50.000 0.00 0.00 0.00 4.70
96 97 4.286910 CTCGGCTCTCTATTCTTCTTTCG 58.713 47.826 0.00 0.00 0.00 3.46
97 98 4.616953 CCTCGGCTCTCTATTCTTCTTTC 58.383 47.826 0.00 0.00 0.00 2.62
98 99 3.181470 GCCTCGGCTCTCTATTCTTCTTT 60.181 47.826 0.00 0.00 38.26 2.52
99 100 2.364002 GCCTCGGCTCTCTATTCTTCTT 59.636 50.000 0.00 0.00 38.26 2.52
100 101 1.960689 GCCTCGGCTCTCTATTCTTCT 59.039 52.381 0.00 0.00 38.26 2.85
101 102 1.000394 GGCCTCGGCTCTCTATTCTTC 60.000 57.143 8.00 0.00 41.60 2.87
102 103 1.044611 GGCCTCGGCTCTCTATTCTT 58.955 55.000 8.00 0.00 41.60 2.52
103 104 0.105964 TGGCCTCGGCTCTCTATTCT 60.106 55.000 3.32 0.00 41.60 2.40
104 105 0.032815 GTGGCCTCGGCTCTCTATTC 59.967 60.000 3.32 0.00 41.60 1.75
105 106 1.403687 GGTGGCCTCGGCTCTCTATT 61.404 60.000 3.32 0.00 41.60 1.73
106 107 1.834822 GGTGGCCTCGGCTCTCTAT 60.835 63.158 3.32 0.00 41.60 1.98
107 108 2.442272 GGTGGCCTCGGCTCTCTA 60.442 66.667 3.32 0.00 41.60 2.43
108 109 4.390556 AGGTGGCCTCGGCTCTCT 62.391 66.667 3.32 0.32 41.60 3.10
109 110 4.154347 CAGGTGGCCTCGGCTCTC 62.154 72.222 3.32 0.00 41.60 3.20
129 130 3.782443 CTTCGGGAGGGGGTTCGG 61.782 72.222 0.00 0.00 0.00 4.30
130 131 3.782443 CCTTCGGGAGGGGGTTCG 61.782 72.222 0.00 0.00 42.26 3.95
146 147 1.595357 CGGTGGTGGAGGTCTTACC 59.405 63.158 0.00 0.00 38.99 2.85
147 148 0.901580 TCCGGTGGTGGAGGTCTTAC 60.902 60.000 0.00 0.00 33.05 2.34
148 149 0.178926 TTCCGGTGGTGGAGGTCTTA 60.179 55.000 0.00 0.00 39.72 2.10
149 150 1.460689 TTCCGGTGGTGGAGGTCTT 60.461 57.895 0.00 0.00 39.72 3.01
150 151 2.203182 TTCCGGTGGTGGAGGTCT 59.797 61.111 0.00 0.00 39.72 3.85
151 152 2.346365 GTTCCGGTGGTGGAGGTC 59.654 66.667 0.00 0.00 39.72 3.85
152 153 3.246880 GGTTCCGGTGGTGGAGGT 61.247 66.667 0.00 0.00 39.72 3.85
153 154 2.928396 AGGTTCCGGTGGTGGAGG 60.928 66.667 0.00 0.00 39.72 4.30
154 155 2.663196 GAGGTTCCGGTGGTGGAG 59.337 66.667 0.00 0.00 39.72 3.86
155 156 3.307906 CGAGGTTCCGGTGGTGGA 61.308 66.667 0.00 0.00 35.83 4.02
156 157 3.584868 GACGAGGTTCCGGTGGTGG 62.585 68.421 0.00 0.00 0.00 4.61
157 158 2.048503 GACGAGGTTCCGGTGGTG 60.049 66.667 0.00 0.00 0.00 4.17
158 159 3.308705 GGACGAGGTTCCGGTGGT 61.309 66.667 0.00 0.00 0.00 4.16
159 160 2.995574 AGGACGAGGTTCCGGTGG 60.996 66.667 0.00 0.00 41.04 4.61
160 161 2.214181 CTCAGGACGAGGTTCCGGTG 62.214 65.000 0.00 0.00 41.04 4.94
161 162 1.977544 CTCAGGACGAGGTTCCGGT 60.978 63.158 0.00 0.00 41.04 5.28
162 163 2.885861 CTCAGGACGAGGTTCCGG 59.114 66.667 0.00 0.00 41.04 5.14
169 170 0.108089 TCGACTCTCCTCAGGACGAG 60.108 60.000 15.15 15.15 41.89 4.18
170 171 0.391395 GTCGACTCTCCTCAGGACGA 60.391 60.000 8.70 0.04 0.00 4.20
171 172 1.697772 CGTCGACTCTCCTCAGGACG 61.698 65.000 14.70 0.00 40.77 4.79
172 173 0.674269 ACGTCGACTCTCCTCAGGAC 60.674 60.000 14.70 0.00 0.00 3.85
173 174 0.673956 CACGTCGACTCTCCTCAGGA 60.674 60.000 14.70 0.00 0.00 3.86
174 175 1.797441 CACGTCGACTCTCCTCAGG 59.203 63.158 14.70 0.00 0.00 3.86
175 176 1.135731 GCACGTCGACTCTCCTCAG 59.864 63.158 14.70 0.00 0.00 3.35
176 177 1.302591 AGCACGTCGACTCTCCTCA 60.303 57.895 14.70 0.00 0.00 3.86
177 178 1.135731 CAGCACGTCGACTCTCCTC 59.864 63.158 14.70 0.00 0.00 3.71
178 179 1.601197 ACAGCACGTCGACTCTCCT 60.601 57.895 14.70 1.63 0.00 3.69
179 180 1.442857 CACAGCACGTCGACTCTCC 60.443 63.158 14.70 0.00 0.00 3.71
180 181 0.516001 TACACAGCACGTCGACTCTC 59.484 55.000 14.70 1.87 0.00 3.20
181 182 1.135660 CATACACAGCACGTCGACTCT 60.136 52.381 14.70 5.05 0.00 3.24
182 183 1.135774 TCATACACAGCACGTCGACTC 60.136 52.381 14.70 2.62 0.00 3.36
183 184 0.879090 TCATACACAGCACGTCGACT 59.121 50.000 14.70 0.00 0.00 4.18
184 185 1.135774 TCTCATACACAGCACGTCGAC 60.136 52.381 5.18 5.18 0.00 4.20
185 186 1.130561 CTCTCATACACAGCACGTCGA 59.869 52.381 0.00 0.00 0.00 4.20
186 187 1.539341 CTCTCATACACAGCACGTCG 58.461 55.000 0.00 0.00 0.00 5.12
187 188 1.469940 CCCTCTCATACACAGCACGTC 60.470 57.143 0.00 0.00 0.00 4.34
188 189 0.532573 CCCTCTCATACACAGCACGT 59.467 55.000 0.00 0.00 0.00 4.49
189 190 0.817654 TCCCTCTCATACACAGCACG 59.182 55.000 0.00 0.00 0.00 5.34
190 191 1.827969 ACTCCCTCTCATACACAGCAC 59.172 52.381 0.00 0.00 0.00 4.40
191 192 1.827344 CACTCCCTCTCATACACAGCA 59.173 52.381 0.00 0.00 0.00 4.41
192 193 1.137872 CCACTCCCTCTCATACACAGC 59.862 57.143 0.00 0.00 0.00 4.40
193 194 1.137872 GCCACTCCCTCTCATACACAG 59.862 57.143 0.00 0.00 0.00 3.66
194 195 1.195115 GCCACTCCCTCTCATACACA 58.805 55.000 0.00 0.00 0.00 3.72
195 196 0.466124 GGCCACTCCCTCTCATACAC 59.534 60.000 0.00 0.00 0.00 2.90
196 197 0.042581 TGGCCACTCCCTCTCATACA 59.957 55.000 0.00 0.00 0.00 2.29
197 198 0.466124 GTGGCCACTCCCTCTCATAC 59.534 60.000 29.12 0.00 0.00 2.39
198 199 0.691078 GGTGGCCACTCCCTCTCATA 60.691 60.000 33.91 0.00 0.00 2.15
199 200 1.997874 GGTGGCCACTCCCTCTCAT 60.998 63.158 33.91 0.00 0.00 2.90
200 201 2.607750 GGTGGCCACTCCCTCTCA 60.608 66.667 33.91 0.00 0.00 3.27
201 202 2.284995 AGGTGGCCACTCCCTCTC 60.285 66.667 33.91 16.34 0.00 3.20
202 203 2.608988 CAGGTGGCCACTCCCTCT 60.609 66.667 33.91 19.86 0.00 3.69
203 204 4.416738 GCAGGTGGCCACTCCCTC 62.417 72.222 33.91 17.83 36.11 4.30
212 213 1.681486 GAGGAGTCTAGGCAGGTGGC 61.681 65.000 0.00 0.00 43.74 5.01
213 214 1.045911 GGAGGAGTCTAGGCAGGTGG 61.046 65.000 0.00 0.00 0.00 4.61
214 215 0.032615 AGGAGGAGTCTAGGCAGGTG 60.033 60.000 0.00 0.00 0.00 4.00
215 216 0.260523 GAGGAGGAGTCTAGGCAGGT 59.739 60.000 0.00 0.00 0.00 4.00
216 217 0.469144 GGAGGAGGAGTCTAGGCAGG 60.469 65.000 0.00 0.00 0.00 4.85
217 218 0.555769 AGGAGGAGGAGTCTAGGCAG 59.444 60.000 0.00 0.00 0.00 4.85
218 219 0.553819 GAGGAGGAGGAGTCTAGGCA 59.446 60.000 0.00 0.00 0.00 4.75
219 220 0.850784 AGAGGAGGAGGAGTCTAGGC 59.149 60.000 0.00 0.00 0.00 3.93
220 221 1.423921 GGAGAGGAGGAGGAGTCTAGG 59.576 61.905 0.00 0.00 0.00 3.02
221 222 1.423921 GGGAGAGGAGGAGGAGTCTAG 59.576 61.905 0.00 0.00 0.00 2.43
222 223 1.525175 GGGAGAGGAGGAGGAGTCTA 58.475 60.000 0.00 0.00 0.00 2.59
223 224 1.293683 GGGGAGAGGAGGAGGAGTCT 61.294 65.000 0.00 0.00 0.00 3.24
224 225 1.231928 GGGGAGAGGAGGAGGAGTC 59.768 68.421 0.00 0.00 0.00 3.36
225 226 1.230819 AGGGGAGAGGAGGAGGAGT 60.231 63.158 0.00 0.00 0.00 3.85
226 227 1.232792 CAGGGGAGAGGAGGAGGAG 59.767 68.421 0.00 0.00 0.00 3.69
227 228 1.230650 TCAGGGGAGAGGAGGAGGA 60.231 63.158 0.00 0.00 0.00 3.71
228 229 1.075600 GTCAGGGGAGAGGAGGAGG 60.076 68.421 0.00 0.00 0.00 4.30
229 230 1.075600 GGTCAGGGGAGAGGAGGAG 60.076 68.421 0.00 0.00 0.00 3.69
230 231 2.997584 CGGTCAGGGGAGAGGAGGA 61.998 68.421 0.00 0.00 0.00 3.71
231 232 2.443016 CGGTCAGGGGAGAGGAGG 60.443 72.222 0.00 0.00 0.00 4.30
232 233 1.454847 CTCGGTCAGGGGAGAGGAG 60.455 68.421 0.00 0.00 31.90 3.69
233 234 1.289982 ATCTCGGTCAGGGGAGAGGA 61.290 60.000 0.00 0.00 42.15 3.71
234 235 0.825840 GATCTCGGTCAGGGGAGAGG 60.826 65.000 0.00 0.00 42.15 3.69
235 236 1.169661 CGATCTCGGTCAGGGGAGAG 61.170 65.000 0.00 0.00 42.15 3.20
236 237 1.152943 CGATCTCGGTCAGGGGAGA 60.153 63.158 0.00 0.00 42.96 3.71
237 238 3.437867 CGATCTCGGTCAGGGGAG 58.562 66.667 0.00 0.00 35.37 4.30
256 257 4.856801 CCCGTCCTTGGGGCATCG 62.857 72.222 0.00 0.00 46.17 3.84
263 264 3.612247 CTGTGAGCCCCGTCCTTGG 62.612 68.421 0.00 0.00 0.00 3.61
264 265 2.046892 CTGTGAGCCCCGTCCTTG 60.047 66.667 0.00 0.00 0.00 3.61
265 266 4.021925 GCTGTGAGCCCCGTCCTT 62.022 66.667 0.00 0.00 34.48 3.36
267 268 4.101448 ATGCTGTGAGCCCCGTCC 62.101 66.667 0.00 0.00 41.51 4.79
268 269 2.512515 GATGCTGTGAGCCCCGTC 60.513 66.667 0.00 0.00 41.51 4.79
269 270 4.101448 GGATGCTGTGAGCCCCGT 62.101 66.667 0.00 0.00 41.51 5.28
270 271 3.746949 GAGGATGCTGTGAGCCCCG 62.747 68.421 0.00 0.00 41.51 5.73
271 272 2.191641 GAGGATGCTGTGAGCCCC 59.808 66.667 0.00 0.00 41.51 5.80
272 273 0.322816 TTTGAGGATGCTGTGAGCCC 60.323 55.000 0.00 0.00 41.51 5.19
273 274 1.538047 TTTTGAGGATGCTGTGAGCC 58.462 50.000 0.00 0.00 41.51 4.70
274 275 2.098770 GGATTTTGAGGATGCTGTGAGC 59.901 50.000 0.00 0.00 42.82 4.26
275 276 3.349927 TGGATTTTGAGGATGCTGTGAG 58.650 45.455 0.00 0.00 0.00 3.51
276 277 3.438216 TGGATTTTGAGGATGCTGTGA 57.562 42.857 0.00 0.00 0.00 3.58
277 278 4.491676 CTTTGGATTTTGAGGATGCTGTG 58.508 43.478 0.00 0.00 0.00 3.66
278 279 3.056322 GCTTTGGATTTTGAGGATGCTGT 60.056 43.478 0.00 0.00 0.00 4.40
279 280 3.056393 TGCTTTGGATTTTGAGGATGCTG 60.056 43.478 0.00 0.00 0.00 4.41
280 281 3.167485 TGCTTTGGATTTTGAGGATGCT 58.833 40.909 0.00 0.00 0.00 3.79
281 282 3.194116 TCTGCTTTGGATTTTGAGGATGC 59.806 43.478 0.00 0.00 0.00 3.91
282 283 5.593679 ATCTGCTTTGGATTTTGAGGATG 57.406 39.130 0.00 0.00 0.00 3.51
283 284 6.183360 CGTTATCTGCTTTGGATTTTGAGGAT 60.183 38.462 0.00 0.00 0.00 3.24
284 285 5.123820 CGTTATCTGCTTTGGATTTTGAGGA 59.876 40.000 0.00 0.00 0.00 3.71
285 286 5.335127 CGTTATCTGCTTTGGATTTTGAGG 58.665 41.667 0.00 0.00 0.00 3.86
286 287 4.795278 GCGTTATCTGCTTTGGATTTTGAG 59.205 41.667 0.00 0.00 0.00 3.02
287 288 4.671508 CGCGTTATCTGCTTTGGATTTTGA 60.672 41.667 0.00 0.00 0.00 2.69
288 289 3.543494 CGCGTTATCTGCTTTGGATTTTG 59.457 43.478 0.00 0.00 0.00 2.44
289 290 3.190535 ACGCGTTATCTGCTTTGGATTTT 59.809 39.130 5.58 0.00 0.00 1.82
290 291 2.747446 ACGCGTTATCTGCTTTGGATTT 59.253 40.909 5.58 0.00 0.00 2.17
291 292 2.095853 CACGCGTTATCTGCTTTGGATT 59.904 45.455 10.22 0.00 0.00 3.01
292 293 1.665679 CACGCGTTATCTGCTTTGGAT 59.334 47.619 10.22 0.00 0.00 3.41
293 294 1.075542 CACGCGTTATCTGCTTTGGA 58.924 50.000 10.22 0.00 0.00 3.53
294 295 0.521242 GCACGCGTTATCTGCTTTGG 60.521 55.000 10.22 0.00 0.00 3.28
295 296 0.443869 AGCACGCGTTATCTGCTTTG 59.556 50.000 10.22 0.00 38.07 2.77
296 297 0.721718 GAGCACGCGTTATCTGCTTT 59.278 50.000 20.22 1.66 41.40 3.51
297 298 0.389817 TGAGCACGCGTTATCTGCTT 60.390 50.000 20.22 6.48 41.40 3.91
298 299 0.389817 TTGAGCACGCGTTATCTGCT 60.390 50.000 19.50 19.50 44.04 4.24
299 300 0.442310 TTTGAGCACGCGTTATCTGC 59.558 50.000 10.22 10.29 0.00 4.26
300 301 2.873170 TTTTGAGCACGCGTTATCTG 57.127 45.000 10.22 0.00 0.00 2.90
301 302 2.095919 GGTTTTTGAGCACGCGTTATCT 60.096 45.455 10.22 7.14 0.00 1.98
302 303 2.239201 GGTTTTTGAGCACGCGTTATC 58.761 47.619 10.22 11.62 0.00 1.75
303 304 1.604755 TGGTTTTTGAGCACGCGTTAT 59.395 42.857 10.22 0.00 0.00 1.89
304 305 1.003331 CTGGTTTTTGAGCACGCGTTA 60.003 47.619 10.22 0.00 0.00 3.18
305 306 0.248458 CTGGTTTTTGAGCACGCGTT 60.248 50.000 10.22 0.00 0.00 4.84
306 307 1.355210 CTGGTTTTTGAGCACGCGT 59.645 52.632 5.58 5.58 0.00 6.01
307 308 1.370414 CCTGGTTTTTGAGCACGCG 60.370 57.895 3.53 3.53 0.00 6.01
308 309 0.948678 TACCTGGTTTTTGAGCACGC 59.051 50.000 3.84 0.00 0.00 5.34
309 310 2.616842 AGTTACCTGGTTTTTGAGCACG 59.383 45.455 3.84 0.00 0.00 5.34
310 311 4.649088 AAGTTACCTGGTTTTTGAGCAC 57.351 40.909 3.84 0.00 0.00 4.40
311 312 5.669164 AAAAGTTACCTGGTTTTTGAGCA 57.331 34.783 3.84 0.00 0.00 4.26
312 313 6.566141 TGTAAAAGTTACCTGGTTTTTGAGC 58.434 36.000 3.84 2.77 0.00 4.26
313 314 7.865889 GGATGTAAAAGTTACCTGGTTTTTGAG 59.134 37.037 3.84 0.00 0.00 3.02
314 315 7.342284 TGGATGTAAAAGTTACCTGGTTTTTGA 59.658 33.333 3.84 0.00 0.00 2.69
315 316 7.493367 TGGATGTAAAAGTTACCTGGTTTTTG 58.507 34.615 3.84 0.00 0.00 2.44
316 317 7.663043 TGGATGTAAAAGTTACCTGGTTTTT 57.337 32.000 3.84 8.75 0.00 1.94
317 318 7.663043 TTGGATGTAAAAGTTACCTGGTTTT 57.337 32.000 3.84 1.73 0.00 2.43
318 319 7.343574 AGTTTGGATGTAAAAGTTACCTGGTTT 59.656 33.333 3.84 0.00 0.00 3.27
319 320 6.837048 AGTTTGGATGTAAAAGTTACCTGGTT 59.163 34.615 3.84 0.00 0.00 3.67
320 321 6.370453 AGTTTGGATGTAAAAGTTACCTGGT 58.630 36.000 4.05 4.05 0.00 4.00
321 322 6.072119 GGAGTTTGGATGTAAAAGTTACCTGG 60.072 42.308 0.00 0.00 0.00 4.45
322 323 6.348213 CGGAGTTTGGATGTAAAAGTTACCTG 60.348 42.308 0.00 0.00 0.00 4.00
323 324 5.704053 CGGAGTTTGGATGTAAAAGTTACCT 59.296 40.000 0.00 0.00 0.00 3.08
324 325 5.471116 ACGGAGTTTGGATGTAAAAGTTACC 59.529 40.000 0.00 0.00 37.78 2.85
325 326 6.549912 ACGGAGTTTGGATGTAAAAGTTAC 57.450 37.500 0.00 0.00 37.78 2.50
343 344 3.859252 GCCCACCAACATTAAAAACGGAG 60.859 47.826 0.00 0.00 0.00 4.63
344 345 2.036089 GCCCACCAACATTAAAAACGGA 59.964 45.455 0.00 0.00 0.00 4.69
345 346 2.036604 AGCCCACCAACATTAAAAACGG 59.963 45.455 0.00 0.00 0.00 4.44
346 347 3.313690 GAGCCCACCAACATTAAAAACG 58.686 45.455 0.00 0.00 0.00 3.60
347 348 3.243602 ACGAGCCCACCAACATTAAAAAC 60.244 43.478 0.00 0.00 0.00 2.43
348 349 2.959707 ACGAGCCCACCAACATTAAAAA 59.040 40.909 0.00 0.00 0.00 1.94
349 350 2.588620 ACGAGCCCACCAACATTAAAA 58.411 42.857 0.00 0.00 0.00 1.52
350 351 2.279935 ACGAGCCCACCAACATTAAA 57.720 45.000 0.00 0.00 0.00 1.52
351 352 2.156098 GAACGAGCCCACCAACATTAA 58.844 47.619 0.00 0.00 0.00 1.40
352 353 1.816074 GAACGAGCCCACCAACATTA 58.184 50.000 0.00 0.00 0.00 1.90
353 354 1.234615 CGAACGAGCCCACCAACATT 61.235 55.000 0.00 0.00 0.00 2.71
354 355 1.671054 CGAACGAGCCCACCAACAT 60.671 57.895 0.00 0.00 0.00 2.71
355 356 2.280524 CGAACGAGCCCACCAACA 60.281 61.111 0.00 0.00 0.00 3.33
356 357 0.953960 ATTCGAACGAGCCCACCAAC 60.954 55.000 0.00 0.00 0.00 3.77
357 358 0.672401 GATTCGAACGAGCCCACCAA 60.672 55.000 0.00 0.00 0.00 3.67
358 359 1.079405 GATTCGAACGAGCCCACCA 60.079 57.895 0.00 0.00 0.00 4.17
359 360 0.462047 ATGATTCGAACGAGCCCACC 60.462 55.000 0.00 0.00 0.00 4.61
360 361 1.859080 GTATGATTCGAACGAGCCCAC 59.141 52.381 0.00 0.00 0.00 4.61
361 362 1.535226 CGTATGATTCGAACGAGCCCA 60.535 52.381 0.00 0.00 38.89 5.36
362 363 1.129326 CGTATGATTCGAACGAGCCC 58.871 55.000 0.00 0.00 38.89 5.19
363 364 2.115348 TCGTATGATTCGAACGAGCC 57.885 50.000 0.00 0.00 40.43 4.70
370 371 3.368495 CGGTGTCATTCGTATGATTCGA 58.632 45.455 8.04 0.00 42.49 3.71
371 372 2.471370 CCGGTGTCATTCGTATGATTCG 59.529 50.000 8.04 11.37 42.49 3.34
372 373 2.221055 GCCGGTGTCATTCGTATGATTC 59.779 50.000 8.04 4.79 42.49 2.52
373 374 2.210116 GCCGGTGTCATTCGTATGATT 58.790 47.619 8.04 0.00 42.49 2.57
374 375 1.138069 TGCCGGTGTCATTCGTATGAT 59.862 47.619 8.04 0.00 42.49 2.45
375 376 0.533032 TGCCGGTGTCATTCGTATGA 59.467 50.000 1.90 0.00 38.45 2.15
376 377 0.650512 GTGCCGGTGTCATTCGTATG 59.349 55.000 1.90 0.00 0.00 2.39
377 378 0.248012 TGTGCCGGTGTCATTCGTAT 59.752 50.000 1.90 0.00 0.00 3.06
378 379 0.668096 GTGTGCCGGTGTCATTCGTA 60.668 55.000 1.90 0.00 0.00 3.43
379 380 1.959226 GTGTGCCGGTGTCATTCGT 60.959 57.895 1.90 0.00 0.00 3.85
380 381 1.227999 AAGTGTGCCGGTGTCATTCG 61.228 55.000 1.90 0.00 0.00 3.34
381 382 0.238289 CAAGTGTGCCGGTGTCATTC 59.762 55.000 1.90 0.00 0.00 2.67
382 383 0.465460 ACAAGTGTGCCGGTGTCATT 60.465 50.000 1.90 0.00 0.00 2.57
383 384 0.394938 TACAAGTGTGCCGGTGTCAT 59.605 50.000 1.90 0.00 0.00 3.06
384 385 0.249699 CTACAAGTGTGCCGGTGTCA 60.250 55.000 1.90 0.00 0.00 3.58
385 386 0.249741 ACTACAAGTGTGCCGGTGTC 60.250 55.000 1.90 0.00 0.00 3.67
386 387 1.042229 TACTACAAGTGTGCCGGTGT 58.958 50.000 1.90 0.00 0.00 4.16
387 388 2.268298 GATACTACAAGTGTGCCGGTG 58.732 52.381 1.90 0.00 0.00 4.94
388 389 1.897133 TGATACTACAAGTGTGCCGGT 59.103 47.619 1.90 0.00 0.00 5.28
389 390 2.665649 TGATACTACAAGTGTGCCGG 57.334 50.000 0.00 0.00 0.00 6.13
390 391 6.844696 AAATATGATACTACAAGTGTGCCG 57.155 37.500 0.00 0.00 0.00 5.69
391 392 8.208718 TCAAAATATGATACTACAAGTGTGCC 57.791 34.615 0.00 0.00 31.50 5.01
467 468 9.998106 AGTCACTCGGTTTAATAATGCTATATT 57.002 29.630 0.00 0.00 0.00 1.28
468 469 9.998106 AAGTCACTCGGTTTAATAATGCTATAT 57.002 29.630 0.00 0.00 0.00 0.86
469 470 9.472361 GAAGTCACTCGGTTTAATAATGCTATA 57.528 33.333 0.00 0.00 0.00 1.31
470 471 7.985184 TGAAGTCACTCGGTTTAATAATGCTAT 59.015 33.333 0.00 0.00 0.00 2.97
471 472 7.324935 TGAAGTCACTCGGTTTAATAATGCTA 58.675 34.615 0.00 0.00 0.00 3.49
472 473 6.170506 TGAAGTCACTCGGTTTAATAATGCT 58.829 36.000 0.00 0.00 0.00 3.79
473 474 6.417191 TGAAGTCACTCGGTTTAATAATGC 57.583 37.500 0.00 0.00 0.00 3.56
481 482 8.013378 CGTTTTATAAATGAAGTCACTCGGTTT 58.987 33.333 0.00 0.00 0.00 3.27
482 483 7.360607 CCGTTTTATAAATGAAGTCACTCGGTT 60.361 37.037 0.00 0.00 0.00 4.44
483 484 6.091713 CCGTTTTATAAATGAAGTCACTCGGT 59.908 38.462 0.00 0.00 0.00 4.69
484 485 6.456449 CCCGTTTTATAAATGAAGTCACTCGG 60.456 42.308 0.00 0.00 0.00 4.63
485 486 6.311935 TCCCGTTTTATAAATGAAGTCACTCG 59.688 38.462 0.00 0.00 0.00 4.18
486 487 7.605410 TCCCGTTTTATAAATGAAGTCACTC 57.395 36.000 0.00 0.00 0.00 3.51
487 488 7.827236 TCATCCCGTTTTATAAATGAAGTCACT 59.173 33.333 0.00 0.00 0.00 3.41
488 489 7.981142 TCATCCCGTTTTATAAATGAAGTCAC 58.019 34.615 0.00 0.00 0.00 3.67
489 490 8.568676 TTCATCCCGTTTTATAAATGAAGTCA 57.431 30.769 0.00 0.00 31.50 3.41
490 491 9.285770 GTTTCATCCCGTTTTATAAATGAAGTC 57.714 33.333 0.00 0.46 35.32 3.01
491 492 8.248253 GGTTTCATCCCGTTTTATAAATGAAGT 58.752 33.333 0.00 0.00 35.32 3.01
492 493 8.247562 TGGTTTCATCCCGTTTTATAAATGAAG 58.752 33.333 0.00 0.00 35.32 3.02
493 494 8.123639 TGGTTTCATCCCGTTTTATAAATGAA 57.876 30.769 0.00 2.54 32.83 2.57
494 495 7.704578 TGGTTTCATCCCGTTTTATAAATGA 57.295 32.000 0.00 0.00 0.00 2.57
495 496 8.764524 TTTGGTTTCATCCCGTTTTATAAATG 57.235 30.769 0.00 0.00 0.00 2.32
496 497 8.038351 CCTTTGGTTTCATCCCGTTTTATAAAT 58.962 33.333 0.00 0.00 0.00 1.40
497 498 7.379750 CCTTTGGTTTCATCCCGTTTTATAAA 58.620 34.615 0.00 0.00 0.00 1.40
498 499 6.572703 GCCTTTGGTTTCATCCCGTTTTATAA 60.573 38.462 0.00 0.00 0.00 0.98
499 500 5.105675 GCCTTTGGTTTCATCCCGTTTTATA 60.106 40.000 0.00 0.00 0.00 0.98
500 501 4.322424 GCCTTTGGTTTCATCCCGTTTTAT 60.322 41.667 0.00 0.00 0.00 1.40
501 502 3.006003 GCCTTTGGTTTCATCCCGTTTTA 59.994 43.478 0.00 0.00 0.00 1.52
502 503 2.224185 GCCTTTGGTTTCATCCCGTTTT 60.224 45.455 0.00 0.00 0.00 2.43
503 504 1.343142 GCCTTTGGTTTCATCCCGTTT 59.657 47.619 0.00 0.00 0.00 3.60
504 505 0.966179 GCCTTTGGTTTCATCCCGTT 59.034 50.000 0.00 0.00 0.00 4.44
505 506 0.112412 AGCCTTTGGTTTCATCCCGT 59.888 50.000 0.00 0.00 0.00 5.28
506 507 1.202348 GAAGCCTTTGGTTTCATCCCG 59.798 52.381 8.04 0.00 41.52 5.14
507 508 2.247358 TGAAGCCTTTGGTTTCATCCC 58.753 47.619 10.97 0.00 45.39 3.85
540 541 3.035363 TCACAGGAACGGGCATAGATTA 58.965 45.455 0.00 0.00 0.00 1.75
541 542 1.837439 TCACAGGAACGGGCATAGATT 59.163 47.619 0.00 0.00 0.00 2.40
542 543 1.414181 CTCACAGGAACGGGCATAGAT 59.586 52.381 0.00 0.00 0.00 1.98
544 545 0.537188 ACTCACAGGAACGGGCATAG 59.463 55.000 0.00 0.00 0.00 2.23
545 546 1.855295 TACTCACAGGAACGGGCATA 58.145 50.000 0.00 0.00 0.00 3.14
546 547 1.204146 ATACTCACAGGAACGGGCAT 58.796 50.000 0.00 0.00 0.00 4.40
547 548 0.981183 AATACTCACAGGAACGGGCA 59.019 50.000 0.00 0.00 0.00 5.36
548 549 2.109425 AAATACTCACAGGAACGGGC 57.891 50.000 0.00 0.00 0.00 6.13
567 568 3.638484 GCAAGCGCCTCTTTTCTAAAAA 58.362 40.909 2.29 0.00 31.27 1.94
568 569 3.282831 GCAAGCGCCTCTTTTCTAAAA 57.717 42.857 2.29 0.00 31.27 1.52
569 570 2.989422 GCAAGCGCCTCTTTTCTAAA 57.011 45.000 2.29 0.00 31.27 1.85
581 582 2.513897 ATAGGAACGGGCAAGCGC 60.514 61.111 0.00 0.00 37.44 5.92
582 583 1.153449 TCATAGGAACGGGCAAGCG 60.153 57.895 0.00 0.00 0.00 4.68
583 584 0.107654 ACTCATAGGAACGGGCAAGC 60.108 55.000 0.00 0.00 0.00 4.01
584 585 1.656652 CACTCATAGGAACGGGCAAG 58.343 55.000 0.00 0.00 0.00 4.01
585 586 0.392461 GCACTCATAGGAACGGGCAA 60.392 55.000 0.00 0.00 0.00 4.52
597 598 0.107993 CCATCAGTCACGGCACTCAT 60.108 55.000 0.00 0.00 0.00 2.90
682 1520 1.645034 CAGGTATGAGTTGACGCCAG 58.355 55.000 0.00 0.00 0.00 4.85
712 1550 0.592637 TGCAATGCAGTGAAAGGTCG 59.407 50.000 20.00 0.00 33.32 4.79
738 1576 0.533032 GTGAGAGAGAAGGGAACGGG 59.467 60.000 0.00 0.00 0.00 5.28
871 1719 1.953686 GACCGATGAAGAGAGAGAGGG 59.046 57.143 0.00 0.00 0.00 4.30
915 1766 1.977129 GATGGGGAAGAGAGAGGGATG 59.023 57.143 0.00 0.00 0.00 3.51
1464 2316 3.814906 TGGTGGTGGTGGTGGTGG 61.815 66.667 0.00 0.00 0.00 4.61
1465 2317 2.518349 GTGGTGGTGGTGGTGGTG 60.518 66.667 0.00 0.00 0.00 4.17
1466 2318 3.816090 GGTGGTGGTGGTGGTGGT 61.816 66.667 0.00 0.00 0.00 4.16
1537 2389 3.181967 GGCTGTGCTCGCGTAGTG 61.182 66.667 5.77 0.00 40.84 2.74
1617 2469 1.204941 GTAGATGACGAAGCCACTGGT 59.795 52.381 0.00 0.00 0.00 4.00
1823 2675 2.506544 CGTTGATCCGCCATAGTCG 58.493 57.895 0.00 0.00 0.00 4.18
2455 3316 7.806487 GTGTATAACTTAGCAAAACTGAAACCC 59.194 37.037 0.00 0.00 0.00 4.11
2504 3365 3.701532 TCAGTTTTTGCGTTTGGGTAG 57.298 42.857 0.00 0.00 0.00 3.18
2548 3409 5.070001 TGTGGAGTAAATGAAAACAGAGGG 58.930 41.667 0.00 0.00 0.00 4.30
2549 3410 6.824305 ATGTGGAGTAAATGAAAACAGAGG 57.176 37.500 0.00 0.00 0.00 3.69
2558 3419 9.817809 GTCAACTCTAATATGTGGAGTAAATGA 57.182 33.333 6.10 4.76 39.09 2.57
2559 3420 9.823647 AGTCAACTCTAATATGTGGAGTAAATG 57.176 33.333 6.10 3.07 39.09 2.32
2564 3425 9.036980 ACTTTAGTCAACTCTAATATGTGGAGT 57.963 33.333 0.00 0.00 41.37 3.85
2565 3426 9.522804 GACTTTAGTCAACTCTAATATGTGGAG 57.477 37.037 5.04 0.00 44.18 3.86
2579 3440 8.890718 ACTTTAGGAAGTTTGACTTTAGTCAAC 58.109 33.333 21.47 16.56 46.03 3.18
2647 3508 9.733556 ACTGTACTTCCACATCATACAAATTTA 57.266 29.630 0.00 0.00 0.00 1.40
2648 3509 8.635765 ACTGTACTTCCACATCATACAAATTT 57.364 30.769 0.00 0.00 0.00 1.82
2649 3510 7.882791 TGACTGTACTTCCACATCATACAAATT 59.117 33.333 0.00 0.00 0.00 1.82
2650 3511 7.394016 TGACTGTACTTCCACATCATACAAAT 58.606 34.615 0.00 0.00 0.00 2.32
2651 3512 6.764379 TGACTGTACTTCCACATCATACAAA 58.236 36.000 0.00 0.00 0.00 2.83
2652 3513 6.353404 TGACTGTACTTCCACATCATACAA 57.647 37.500 0.00 0.00 0.00 2.41
2653 3514 5.993748 TGACTGTACTTCCACATCATACA 57.006 39.130 0.00 0.00 0.00 2.29
2654 3515 8.942338 TTATTGACTGTACTTCCACATCATAC 57.058 34.615 0.00 0.00 0.00 2.39
2657 3518 9.952030 TTAATTATTGACTGTACTTCCACATCA 57.048 29.630 0.00 0.00 0.00 3.07
2734 3595 7.970614 AGTCAAGCTTTCTAAACTTTGACAAAG 59.029 33.333 23.41 23.41 44.10 2.77
2735 3596 7.826690 AGTCAAGCTTTCTAAACTTTGACAAA 58.173 30.769 19.25 0.00 30.59 2.83
2736 3597 7.391148 AGTCAAGCTTTCTAAACTTTGACAA 57.609 32.000 19.25 0.00 30.59 3.18
2737 3598 7.391148 AAGTCAAGCTTTCTAAACTTTGACA 57.609 32.000 19.25 0.00 32.57 3.58
2738 3599 7.968405 TCAAAGTCAAGCTTTCTAAACTTTGAC 59.032 33.333 26.80 17.23 45.97 3.18
2740 3601 7.220875 GGTCAAAGTCAAGCTTTCTAAACTTTG 59.779 37.037 24.71 24.71 44.95 2.77
2741 3602 7.093945 TGGTCAAAGTCAAGCTTTCTAAACTTT 60.094 33.333 0.00 5.64 44.95 2.66
2742 3603 6.377146 TGGTCAAAGTCAAGCTTTCTAAACTT 59.623 34.615 0.00 0.00 44.95 2.66
2743 3604 5.885912 TGGTCAAAGTCAAGCTTTCTAAACT 59.114 36.000 0.00 0.00 44.95 2.66
2744 3605 6.131544 TGGTCAAAGTCAAGCTTTCTAAAC 57.868 37.500 0.00 0.00 44.95 2.01
2745 3606 6.767524 TTGGTCAAAGTCAAGCTTTCTAAA 57.232 33.333 0.00 0.00 44.95 1.85
2746 3607 6.767524 TTTGGTCAAAGTCAAGCTTTCTAA 57.232 33.333 0.00 0.00 44.95 2.10
2747 3608 6.377327 CTTTGGTCAAAGTCAAGCTTTCTA 57.623 37.500 13.58 0.00 44.95 2.10
2748 3609 5.254339 CTTTGGTCAAAGTCAAGCTTTCT 57.746 39.130 13.58 0.00 44.95 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.