Multiple sequence alignment - TraesCS1A01G221600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G221600 chr1A 100.000 3191 0 0 1 3191 390707691 390710881 0.000000e+00 5893.0
1 TraesCS1A01G221600 chr1A 87.440 207 26 0 1870 2076 530781653 530781859 4.110000e-59 239.0
2 TraesCS1A01G221600 chr1B 92.796 2693 110 30 563 3191 420684323 420686995 0.000000e+00 3821.0
3 TraesCS1A01G221600 chr1B 87.440 207 26 0 1870 2076 583760672 583760878 4.110000e-59 239.0
4 TraesCS1A01G221600 chr1B 89.130 92 9 1 438 528 420660016 420660107 2.600000e-21 113.0
5 TraesCS1A01G221600 chr1D 91.735 2795 127 36 457 3191 310816798 310814048 0.000000e+00 3786.0
6 TraesCS1A01G221600 chr1D 88.406 207 24 0 1870 2076 432319765 432319971 1.900000e-62 250.0
7 TraesCS1A01G221600 chr5A 91.775 231 19 0 1868 2098 696925395 696925165 3.970000e-84 322.0
8 TraesCS1A01G221600 chr4D 82.796 186 30 1 1862 2047 475675928 475676111 7.080000e-37 165.0
9 TraesCS1A01G221600 chr2D 81.221 213 28 8 1871 2077 491194239 491194445 9.160000e-36 161.0
10 TraesCS1A01G221600 chr2D 92.105 38 3 0 9 46 379814279 379814316 2.000000e-03 54.7
11 TraesCS1A01G221600 chr2A 81.221 213 28 8 1871 2077 635512088 635512294 9.160000e-36 161.0
12 TraesCS1A01G221600 chr3A 95.238 42 2 0 7 48 737872018 737871977 2.050000e-07 67.6
13 TraesCS1A01G221600 chr7B 73.303 221 42 11 7 215 51044823 51044608 7.390000e-07 65.8
14 TraesCS1A01G221600 chr3B 96.875 32 1 0 8 39 609304099 609304068 2.000000e-03 54.7
15 TraesCS1A01G221600 chr2B 100.000 28 0 0 9 36 450786353 450786380 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G221600 chr1A 390707691 390710881 3190 False 5893 5893 100.000 1 3191 1 chr1A.!!$F1 3190
1 TraesCS1A01G221600 chr1B 420684323 420686995 2672 False 3821 3821 92.796 563 3191 1 chr1B.!!$F2 2628
2 TraesCS1A01G221600 chr1D 310814048 310816798 2750 True 3786 3786 91.735 457 3191 1 chr1D.!!$R1 2734

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
909 927 0.03213 TTCTCGCACACTCACACTCC 59.968 55.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2625 2698 0.035534 TGCATGACCGGCAGTAACAT 60.036 50.0 0.0 0.0 36.11 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 5.032100 CTCAAATGAGCTTGAGTGAACAG 57.968 43.478 5.17 0.00 44.86 3.16
32 33 4.454678 TCAAATGAGCTTGAGTGAACAGT 58.545 39.130 0.00 0.00 31.67 3.55
33 34 5.610398 TCAAATGAGCTTGAGTGAACAGTA 58.390 37.500 0.00 0.00 31.67 2.74
34 35 6.054941 TCAAATGAGCTTGAGTGAACAGTAA 58.945 36.000 0.00 0.00 31.67 2.24
35 36 6.542005 TCAAATGAGCTTGAGTGAACAGTAAA 59.458 34.615 0.00 0.00 31.67 2.01
36 37 7.229306 TCAAATGAGCTTGAGTGAACAGTAAAT 59.771 33.333 0.00 0.00 31.67 1.40
37 38 7.516198 AATGAGCTTGAGTGAACAGTAAATT 57.484 32.000 0.00 0.00 0.00 1.82
38 39 6.545504 TGAGCTTGAGTGAACAGTAAATTC 57.454 37.500 0.00 0.00 0.00 2.17
39 40 6.291377 TGAGCTTGAGTGAACAGTAAATTCT 58.709 36.000 0.00 0.00 0.00 2.40
40 41 7.441836 TGAGCTTGAGTGAACAGTAAATTCTA 58.558 34.615 0.00 0.00 0.00 2.10
41 42 7.931407 TGAGCTTGAGTGAACAGTAAATTCTAA 59.069 33.333 0.00 0.00 0.00 2.10
42 43 8.677148 AGCTTGAGTGAACAGTAAATTCTAAA 57.323 30.769 0.00 0.00 0.00 1.85
43 44 9.120538 AGCTTGAGTGAACAGTAAATTCTAAAA 57.879 29.630 0.00 0.00 0.00 1.52
44 45 9.730420 GCTTGAGTGAACAGTAAATTCTAAAAA 57.270 29.630 0.00 0.00 0.00 1.94
78 79 9.797556 ATAAGGAAACTATTTTATTTTCGTGGC 57.202 29.630 0.00 0.00 42.68 5.01
79 80 7.222000 AGGAAACTATTTTATTTTCGTGGCA 57.778 32.000 0.00 0.00 40.61 4.92
80 81 7.662897 AGGAAACTATTTTATTTTCGTGGCAA 58.337 30.769 0.00 0.00 40.61 4.52
81 82 8.145122 AGGAAACTATTTTATTTTCGTGGCAAA 58.855 29.630 0.00 0.00 40.61 3.68
82 83 8.218441 GGAAACTATTTTATTTTCGTGGCAAAC 58.782 33.333 0.00 0.00 30.67 2.93
83 84 8.649973 AAACTATTTTATTTTCGTGGCAAACA 57.350 26.923 0.00 0.00 0.00 2.83
84 85 7.631915 ACTATTTTATTTTCGTGGCAAACAC 57.368 32.000 0.00 0.00 46.78 3.32
98 99 5.771469 TGGCAAACACTGACAAATATTCTG 58.229 37.500 0.00 0.00 41.45 3.02
99 100 5.163513 GGCAAACACTGACAAATATTCTGG 58.836 41.667 0.00 0.00 30.79 3.86
100 101 5.163513 GCAAACACTGACAAATATTCTGGG 58.836 41.667 0.00 0.00 0.00 4.45
101 102 5.278957 GCAAACACTGACAAATATTCTGGGT 60.279 40.000 0.00 0.00 30.44 4.51
102 103 5.964958 AACACTGACAAATATTCTGGGTG 57.035 39.130 0.00 0.00 29.77 4.61
103 104 4.985538 ACACTGACAAATATTCTGGGTGT 58.014 39.130 0.00 0.00 28.29 4.16
104 105 5.385198 ACACTGACAAATATTCTGGGTGTT 58.615 37.500 0.00 0.00 32.55 3.32
105 106 5.473504 ACACTGACAAATATTCTGGGTGTTC 59.526 40.000 0.00 0.00 32.55 3.18
106 107 4.695455 ACTGACAAATATTCTGGGTGTTCG 59.305 41.667 0.00 0.00 0.00 3.95
107 108 4.647611 TGACAAATATTCTGGGTGTTCGT 58.352 39.130 0.00 0.00 0.00 3.85
108 109 5.795972 TGACAAATATTCTGGGTGTTCGTA 58.204 37.500 0.00 0.00 0.00 3.43
109 110 6.231951 TGACAAATATTCTGGGTGTTCGTAA 58.768 36.000 0.00 0.00 0.00 3.18
110 111 6.711194 TGACAAATATTCTGGGTGTTCGTAAA 59.289 34.615 0.00 0.00 0.00 2.01
111 112 7.392113 TGACAAATATTCTGGGTGTTCGTAAAT 59.608 33.333 0.00 0.00 0.00 1.40
112 113 8.117813 ACAAATATTCTGGGTGTTCGTAAATT 57.882 30.769 0.00 0.00 0.00 1.82
113 114 8.581578 ACAAATATTCTGGGTGTTCGTAAATTT 58.418 29.630 0.00 0.00 0.00 1.82
114 115 9.418045 CAAATATTCTGGGTGTTCGTAAATTTT 57.582 29.630 0.00 0.00 0.00 1.82
115 116 9.990360 AAATATTCTGGGTGTTCGTAAATTTTT 57.010 25.926 0.00 0.00 0.00 1.94
119 120 7.747155 TCTGGGTGTTCGTAAATTTTTATCA 57.253 32.000 0.00 0.00 0.00 2.15
120 121 8.343168 TCTGGGTGTTCGTAAATTTTTATCAT 57.657 30.769 0.00 0.00 0.00 2.45
121 122 8.240682 TCTGGGTGTTCGTAAATTTTTATCATG 58.759 33.333 0.00 0.00 0.00 3.07
122 123 8.112016 TGGGTGTTCGTAAATTTTTATCATGA 57.888 30.769 0.00 0.00 0.00 3.07
123 124 8.240682 TGGGTGTTCGTAAATTTTTATCATGAG 58.759 33.333 0.09 0.00 0.00 2.90
124 125 8.455682 GGGTGTTCGTAAATTTTTATCATGAGA 58.544 33.333 0.09 0.00 0.00 3.27
125 126 9.834628 GGTGTTCGTAAATTTTTATCATGAGAA 57.165 29.630 0.09 0.00 0.00 2.87
140 141 7.756395 ATCATGAGAAGACATTTGTGAAAGT 57.244 32.000 0.09 0.00 0.00 2.66
141 142 8.853077 ATCATGAGAAGACATTTGTGAAAGTA 57.147 30.769 0.09 0.00 0.00 2.24
142 143 8.675705 TCATGAGAAGACATTTGTGAAAGTAA 57.324 30.769 0.00 0.00 0.00 2.24
143 144 9.288576 TCATGAGAAGACATTTGTGAAAGTAAT 57.711 29.630 0.00 0.00 0.00 1.89
146 147 9.996554 TGAGAAGACATTTGTGAAAGTAATAGA 57.003 29.630 0.00 0.00 0.00 1.98
178 179 9.586435 ACAAAATAATAAATGCTCCTAAAGTGC 57.414 29.630 0.00 0.00 35.49 4.40
179 180 9.807649 CAAAATAATAAATGCTCCTAAAGTGCT 57.192 29.630 0.00 0.00 35.94 4.40
186 187 7.466746 AAATGCTCCTAAAGTGCTAATTTCA 57.533 32.000 0.00 0.00 35.94 2.69
187 188 7.466746 AATGCTCCTAAAGTGCTAATTTCAA 57.533 32.000 0.00 0.00 35.94 2.69
188 189 6.892658 TGCTCCTAAAGTGCTAATTTCAAA 57.107 33.333 0.00 0.00 35.94 2.69
189 190 7.283625 TGCTCCTAAAGTGCTAATTTCAAAA 57.716 32.000 0.00 0.00 35.94 2.44
190 191 7.721402 TGCTCCTAAAGTGCTAATTTCAAAAA 58.279 30.769 0.00 0.00 35.94 1.94
191 192 8.367156 TGCTCCTAAAGTGCTAATTTCAAAAAT 58.633 29.630 0.00 0.00 35.94 1.82
192 193 9.855021 GCTCCTAAAGTGCTAATTTCAAAAATA 57.145 29.630 0.00 0.00 32.10 1.40
217 218 8.776376 ATTTCAGAGTGTTGATTTTGTTGTTT 57.224 26.923 0.00 0.00 0.00 2.83
218 219 8.600449 TTTCAGAGTGTTGATTTTGTTGTTTT 57.400 26.923 0.00 0.00 0.00 2.43
219 220 8.600449 TTCAGAGTGTTGATTTTGTTGTTTTT 57.400 26.923 0.00 0.00 0.00 1.94
220 221 8.238481 TCAGAGTGTTGATTTTGTTGTTTTTC 57.762 30.769 0.00 0.00 0.00 2.29
221 222 7.330700 TCAGAGTGTTGATTTTGTTGTTTTTCC 59.669 33.333 0.00 0.00 0.00 3.13
222 223 7.117523 CAGAGTGTTGATTTTGTTGTTTTTCCA 59.882 33.333 0.00 0.00 0.00 3.53
223 224 7.117667 AGAGTGTTGATTTTGTTGTTTTTCCAC 59.882 33.333 0.00 0.00 0.00 4.02
224 225 6.012482 GTGTTGATTTTGTTGTTTTTCCACG 58.988 36.000 0.00 0.00 0.00 4.94
225 226 5.120830 TGTTGATTTTGTTGTTTTTCCACGG 59.879 36.000 0.00 0.00 0.00 4.94
226 227 3.619038 TGATTTTGTTGTTTTTCCACGGC 59.381 39.130 0.00 0.00 0.00 5.68
227 228 3.320673 TTTTGTTGTTTTTCCACGGCT 57.679 38.095 0.00 0.00 0.00 5.52
228 229 3.320673 TTTGTTGTTTTTCCACGGCTT 57.679 38.095 0.00 0.00 0.00 4.35
229 230 2.570442 TGTTGTTTTTCCACGGCTTC 57.430 45.000 0.00 0.00 0.00 3.86
230 231 1.819288 TGTTGTTTTTCCACGGCTTCA 59.181 42.857 0.00 0.00 0.00 3.02
231 232 2.231478 TGTTGTTTTTCCACGGCTTCAA 59.769 40.909 0.00 0.00 0.00 2.69
232 233 2.570442 TGTTTTTCCACGGCTTCAAC 57.430 45.000 0.00 0.00 0.00 3.18
233 234 1.202200 TGTTTTTCCACGGCTTCAACG 60.202 47.619 0.00 0.00 37.36 4.10
234 235 0.382515 TTTTTCCACGGCTTCAACGG 59.617 50.000 0.00 0.00 35.23 4.44
235 236 0.464013 TTTTCCACGGCTTCAACGGA 60.464 50.000 0.00 0.00 35.23 4.69
236 237 0.250553 TTTCCACGGCTTCAACGGAT 60.251 50.000 0.00 0.00 35.23 4.18
237 238 0.953471 TTCCACGGCTTCAACGGATG 60.953 55.000 0.00 0.00 35.23 3.51
238 239 1.671054 CCACGGCTTCAACGGATGT 60.671 57.895 0.00 0.00 35.23 3.06
239 240 1.635663 CCACGGCTTCAACGGATGTC 61.636 60.000 0.00 0.00 35.23 3.06
240 241 0.948623 CACGGCTTCAACGGATGTCA 60.949 55.000 0.00 0.00 35.23 3.58
241 242 0.036388 ACGGCTTCAACGGATGTCAT 60.036 50.000 0.00 0.00 35.23 3.06
242 243 1.086696 CGGCTTCAACGGATGTCATT 58.913 50.000 0.00 0.00 0.00 2.57
243 244 1.062587 CGGCTTCAACGGATGTCATTC 59.937 52.381 0.00 0.00 0.00 2.67
244 245 1.401905 GGCTTCAACGGATGTCATTCC 59.598 52.381 0.00 0.00 0.00 3.01
245 246 2.083774 GCTTCAACGGATGTCATTCCA 58.916 47.619 0.00 0.00 35.34 3.53
246 247 2.684881 GCTTCAACGGATGTCATTCCAT 59.315 45.455 0.00 0.00 35.34 3.41
247 248 3.488047 GCTTCAACGGATGTCATTCCATG 60.488 47.826 0.00 0.00 35.34 3.66
248 249 2.642427 TCAACGGATGTCATTCCATGG 58.358 47.619 4.97 4.97 35.34 3.66
249 250 2.026356 TCAACGGATGTCATTCCATGGT 60.026 45.455 12.58 0.00 35.34 3.55
250 251 2.042686 ACGGATGTCATTCCATGGTG 57.957 50.000 12.58 3.51 35.34 4.17
251 252 1.559219 ACGGATGTCATTCCATGGTGA 59.441 47.619 12.58 6.27 35.34 4.02
252 253 2.026356 ACGGATGTCATTCCATGGTGAA 60.026 45.455 12.58 0.00 35.34 3.18
253 254 3.016031 CGGATGTCATTCCATGGTGAAA 58.984 45.455 12.58 4.52 35.34 2.69
254 255 3.633525 CGGATGTCATTCCATGGTGAAAT 59.366 43.478 12.58 9.69 35.34 2.17
255 256 4.261322 CGGATGTCATTCCATGGTGAAATC 60.261 45.833 20.33 20.33 38.03 2.17
256 257 4.891756 GGATGTCATTCCATGGTGAAATCT 59.108 41.667 24.53 2.93 38.55 2.40
257 258 6.064060 GGATGTCATTCCATGGTGAAATCTA 58.936 40.000 24.53 4.57 38.55 1.98
258 259 6.016777 GGATGTCATTCCATGGTGAAATCTAC 60.017 42.308 24.53 12.53 38.55 2.59
259 260 5.814481 TGTCATTCCATGGTGAAATCTACA 58.186 37.500 12.58 8.15 0.00 2.74
260 261 6.244654 TGTCATTCCATGGTGAAATCTACAA 58.755 36.000 12.58 0.00 0.00 2.41
261 262 6.375174 TGTCATTCCATGGTGAAATCTACAAG 59.625 38.462 12.58 0.00 0.00 3.16
262 263 5.357878 TCATTCCATGGTGAAATCTACAAGC 59.642 40.000 12.58 0.00 0.00 4.01
263 264 4.299586 TCCATGGTGAAATCTACAAGCA 57.700 40.909 12.58 0.00 0.00 3.91
264 265 4.009675 TCCATGGTGAAATCTACAAGCAC 58.990 43.478 12.58 0.00 0.00 4.40
265 266 4.012374 CCATGGTGAAATCTACAAGCACT 58.988 43.478 2.57 0.00 0.00 4.40
266 267 4.095483 CCATGGTGAAATCTACAAGCACTC 59.905 45.833 2.57 0.00 0.00 3.51
267 268 4.350368 TGGTGAAATCTACAAGCACTCA 57.650 40.909 0.00 0.00 0.00 3.41
268 269 4.713553 TGGTGAAATCTACAAGCACTCAA 58.286 39.130 0.00 0.00 0.00 3.02
269 270 5.129634 TGGTGAAATCTACAAGCACTCAAA 58.870 37.500 0.00 0.00 0.00 2.69
270 271 5.008613 TGGTGAAATCTACAAGCACTCAAAC 59.991 40.000 0.00 0.00 0.00 2.93
271 272 5.452777 GTGAAATCTACAAGCACTCAAACC 58.547 41.667 0.00 0.00 0.00 3.27
272 273 5.008613 GTGAAATCTACAAGCACTCAAACCA 59.991 40.000 0.00 0.00 0.00 3.67
273 274 5.769662 TGAAATCTACAAGCACTCAAACCAT 59.230 36.000 0.00 0.00 0.00 3.55
274 275 6.265196 TGAAATCTACAAGCACTCAAACCATT 59.735 34.615 0.00 0.00 0.00 3.16
275 276 5.886960 ATCTACAAGCACTCAAACCATTC 57.113 39.130 0.00 0.00 0.00 2.67
276 277 3.745975 TCTACAAGCACTCAAACCATTCG 59.254 43.478 0.00 0.00 0.00 3.34
277 278 1.001378 ACAAGCACTCAAACCATTCGC 60.001 47.619 0.00 0.00 0.00 4.70
278 279 1.267806 CAAGCACTCAAACCATTCGCT 59.732 47.619 0.00 0.00 0.00 4.93
279 280 2.472695 AGCACTCAAACCATTCGCTA 57.527 45.000 0.00 0.00 0.00 4.26
280 281 2.778299 AGCACTCAAACCATTCGCTAA 58.222 42.857 0.00 0.00 0.00 3.09
281 282 3.146066 AGCACTCAAACCATTCGCTAAA 58.854 40.909 0.00 0.00 0.00 1.85
282 283 3.189287 AGCACTCAAACCATTCGCTAAAG 59.811 43.478 0.00 0.00 0.00 1.85
283 284 3.058224 GCACTCAAACCATTCGCTAAAGT 60.058 43.478 0.00 0.00 0.00 2.66
284 285 4.556699 GCACTCAAACCATTCGCTAAAGTT 60.557 41.667 0.00 0.00 0.00 2.66
285 286 5.519722 CACTCAAACCATTCGCTAAAGTTT 58.480 37.500 0.00 0.00 0.00 2.66
286 287 5.399301 CACTCAAACCATTCGCTAAAGTTTG 59.601 40.000 17.12 17.12 45.40 2.93
288 289 6.325919 TCAAACCATTCGCTAAAGTTTGAT 57.674 33.333 19.82 0.00 46.74 2.57
289 290 7.441890 TCAAACCATTCGCTAAAGTTTGATA 57.558 32.000 19.82 7.44 46.74 2.15
290 291 7.302524 TCAAACCATTCGCTAAAGTTTGATAC 58.697 34.615 19.82 0.00 46.74 2.24
291 292 6.811253 AACCATTCGCTAAAGTTTGATACA 57.189 33.333 0.00 0.00 0.00 2.29
292 293 6.178239 ACCATTCGCTAAAGTTTGATACAC 57.822 37.500 0.00 0.00 0.00 2.90
293 294 5.703592 ACCATTCGCTAAAGTTTGATACACA 59.296 36.000 0.00 0.00 0.00 3.72
294 295 6.021596 CCATTCGCTAAAGTTTGATACACAC 58.978 40.000 0.00 0.00 0.00 3.82
295 296 6.348132 CCATTCGCTAAAGTTTGATACACACA 60.348 38.462 0.00 0.00 0.00 3.72
296 297 6.606234 TTCGCTAAAGTTTGATACACACAA 57.394 33.333 0.00 0.00 0.00 3.33
297 298 6.606234 TCGCTAAAGTTTGATACACACAAA 57.394 33.333 0.00 0.00 35.34 2.83
298 299 7.017498 TCGCTAAAGTTTGATACACACAAAA 57.983 32.000 0.00 0.00 38.63 2.44
299 300 7.644490 TCGCTAAAGTTTGATACACACAAAAT 58.356 30.769 0.00 0.00 38.63 1.82
300 301 8.132362 TCGCTAAAGTTTGATACACACAAAATT 58.868 29.630 0.00 0.00 43.70 1.82
301 302 8.417176 CGCTAAAGTTTGATACACACAAAATTC 58.583 33.333 0.00 0.00 42.00 2.17
302 303 9.243637 GCTAAAGTTTGATACACACAAAATTCA 57.756 29.630 0.00 0.00 42.00 2.57
307 308 9.260002 AGTTTGATACACACAAAATTCAAATCC 57.740 29.630 0.00 0.00 38.63 3.01
308 309 9.260002 GTTTGATACACACAAAATTCAAATCCT 57.740 29.630 0.00 0.00 38.63 3.24
309 310 9.829507 TTTGATACACACAAAATTCAAATCCTT 57.170 25.926 0.00 0.00 34.89 3.36
310 311 9.474920 TTGATACACACAAAATTCAAATCCTTC 57.525 29.630 0.00 0.00 0.00 3.46
311 312 8.637099 TGATACACACAAAATTCAAATCCTTCA 58.363 29.630 0.00 0.00 0.00 3.02
312 313 9.132521 GATACACACAAAATTCAAATCCTTCAG 57.867 33.333 0.00 0.00 0.00 3.02
313 314 7.111247 ACACACAAAATTCAAATCCTTCAGA 57.889 32.000 0.00 0.00 0.00 3.27
314 315 7.555087 ACACACAAAATTCAAATCCTTCAGAA 58.445 30.769 0.00 0.00 0.00 3.02
315 316 8.206189 ACACACAAAATTCAAATCCTTCAGAAT 58.794 29.630 0.00 0.00 32.45 2.40
316 317 9.048446 CACACAAAATTCAAATCCTTCAGAATT 57.952 29.630 0.00 0.00 41.11 2.17
317 318 9.617523 ACACAAAATTCAAATCCTTCAGAATTT 57.382 25.926 0.00 0.00 46.68 1.82
318 319 9.872757 CACAAAATTCAAATCCTTCAGAATTTG 57.127 29.630 11.35 2.44 45.03 2.32
319 320 9.617523 ACAAAATTCAAATCCTTCAGAATTTGT 57.382 25.926 11.35 9.32 45.03 2.83
349 350 9.624697 TTTTTGGAATTTAATGTTCATCTCGAG 57.375 29.630 5.93 5.93 0.00 4.04
350 351 6.363577 TGGAATTTAATGTTCATCTCGAGC 57.636 37.500 7.81 0.00 0.00 5.03
351 352 6.115446 TGGAATTTAATGTTCATCTCGAGCT 58.885 36.000 7.81 0.00 0.00 4.09
352 353 6.258727 TGGAATTTAATGTTCATCTCGAGCTC 59.741 38.462 7.81 2.73 0.00 4.09
353 354 6.258727 GGAATTTAATGTTCATCTCGAGCTCA 59.741 38.462 15.40 2.65 0.00 4.26
354 355 7.041508 GGAATTTAATGTTCATCTCGAGCTCAT 60.042 37.037 15.40 4.88 0.00 2.90
355 356 7.798596 ATTTAATGTTCATCTCGAGCTCATT 57.201 32.000 15.40 14.31 0.00 2.57
356 357 7.615582 TTTAATGTTCATCTCGAGCTCATTT 57.384 32.000 15.40 0.00 0.00 2.32
357 358 8.716646 TTTAATGTTCATCTCGAGCTCATTTA 57.283 30.769 15.40 5.31 0.00 1.40
358 359 8.716646 TTAATGTTCATCTCGAGCTCATTTAA 57.283 30.769 15.40 3.60 0.00 1.52
359 360 6.841443 ATGTTCATCTCGAGCTCATTTAAG 57.159 37.500 15.40 2.83 0.00 1.85
360 361 4.568359 TGTTCATCTCGAGCTCATTTAAGC 59.432 41.667 15.40 0.00 42.82 3.09
368 369 2.317530 GCTCATTTAAGCTCCGAGGT 57.682 50.000 0.00 0.00 39.27 3.85
369 370 3.454371 GCTCATTTAAGCTCCGAGGTA 57.546 47.619 0.00 0.00 39.27 3.08
370 371 3.385577 GCTCATTTAAGCTCCGAGGTAG 58.614 50.000 0.00 0.00 39.27 3.18
371 372 3.068307 GCTCATTTAAGCTCCGAGGTAGA 59.932 47.826 0.00 0.00 39.27 2.59
372 373 4.441634 GCTCATTTAAGCTCCGAGGTAGAA 60.442 45.833 0.00 0.00 39.27 2.10
373 374 5.263968 TCATTTAAGCTCCGAGGTAGAAG 57.736 43.478 0.00 0.00 0.00 2.85
374 375 4.954202 TCATTTAAGCTCCGAGGTAGAAGA 59.046 41.667 0.00 0.00 0.00 2.87
375 376 4.985538 TTTAAGCTCCGAGGTAGAAGAG 57.014 45.455 0.00 0.00 0.00 2.85
379 380 1.757682 CTCCGAGGTAGAAGAGCACT 58.242 55.000 0.00 0.00 0.00 4.40
380 381 2.096248 CTCCGAGGTAGAAGAGCACTT 58.904 52.381 0.00 0.00 39.24 3.16
381 382 2.494073 CTCCGAGGTAGAAGAGCACTTT 59.506 50.000 0.00 0.00 36.39 2.66
382 383 2.492484 TCCGAGGTAGAAGAGCACTTTC 59.508 50.000 0.00 0.00 36.39 2.62
383 384 2.494073 CCGAGGTAGAAGAGCACTTTCT 59.506 50.000 0.00 0.42 36.39 2.52
384 385 3.428316 CCGAGGTAGAAGAGCACTTTCTC 60.428 52.174 0.00 3.34 36.39 2.87
385 386 3.191581 CGAGGTAGAAGAGCACTTTCTCA 59.808 47.826 0.00 0.00 36.39 3.27
386 387 4.321304 CGAGGTAGAAGAGCACTTTCTCAA 60.321 45.833 0.00 0.00 36.39 3.02
387 388 4.888917 AGGTAGAAGAGCACTTTCTCAAC 58.111 43.478 0.00 0.00 36.39 3.18
388 389 4.345257 AGGTAGAAGAGCACTTTCTCAACA 59.655 41.667 0.00 0.00 36.39 3.33
389 390 5.057149 GGTAGAAGAGCACTTTCTCAACAA 58.943 41.667 0.00 0.00 36.39 2.83
390 391 5.050023 GGTAGAAGAGCACTTTCTCAACAAC 60.050 44.000 0.00 0.00 36.39 3.32
391 392 3.557595 AGAAGAGCACTTTCTCAACAACG 59.442 43.478 0.00 0.00 36.39 4.10
392 393 2.213499 AGAGCACTTTCTCAACAACGG 58.787 47.619 0.00 0.00 35.59 4.44
393 394 2.158957 AGAGCACTTTCTCAACAACGGA 60.159 45.455 0.00 0.00 35.59 4.69
394 395 2.213499 AGCACTTTCTCAACAACGGAG 58.787 47.619 0.00 0.00 0.00 4.63
395 396 1.334149 GCACTTTCTCAACAACGGAGC 60.334 52.381 0.00 0.00 32.38 4.70
396 397 2.213499 CACTTTCTCAACAACGGAGCT 58.787 47.619 0.00 0.00 32.38 4.09
397 398 3.390135 CACTTTCTCAACAACGGAGCTA 58.610 45.455 0.00 0.00 32.38 3.32
398 399 3.997021 CACTTTCTCAACAACGGAGCTAT 59.003 43.478 0.00 0.00 32.38 2.97
399 400 3.997021 ACTTTCTCAACAACGGAGCTATG 59.003 43.478 0.00 0.00 32.38 2.23
400 401 3.678056 TTCTCAACAACGGAGCTATGT 57.322 42.857 0.00 0.00 32.38 2.29
401 402 3.678056 TCTCAACAACGGAGCTATGTT 57.322 42.857 0.00 0.00 37.76 2.71
405 406 2.386661 ACAACGGAGCTATGTTGAGG 57.613 50.000 27.91 9.99 46.45 3.86
406 407 1.009829 CAACGGAGCTATGTTGAGGC 58.990 55.000 20.45 0.00 46.45 4.70
407 408 0.460284 AACGGAGCTATGTTGAGGCG 60.460 55.000 2.46 0.00 0.00 5.52
408 409 1.320344 ACGGAGCTATGTTGAGGCGA 61.320 55.000 0.00 0.00 0.00 5.54
409 410 0.596083 CGGAGCTATGTTGAGGCGAG 60.596 60.000 0.00 0.00 0.00 5.03
410 411 0.249657 GGAGCTATGTTGAGGCGAGG 60.250 60.000 0.00 0.00 0.00 4.63
411 412 0.249657 GAGCTATGTTGAGGCGAGGG 60.250 60.000 0.00 0.00 0.00 4.30
412 413 1.227674 GCTATGTTGAGGCGAGGGG 60.228 63.158 0.00 0.00 0.00 4.79
413 414 1.447643 CTATGTTGAGGCGAGGGGG 59.552 63.158 0.00 0.00 0.00 5.40
433 434 5.675684 GGGGGCTAGAAAATTTCATTTGA 57.324 39.130 8.55 0.00 31.77 2.69
434 435 6.048732 GGGGGCTAGAAAATTTCATTTGAA 57.951 37.500 8.55 0.00 31.77 2.69
435 436 6.108687 GGGGGCTAGAAAATTTCATTTGAAG 58.891 40.000 8.55 0.00 35.21 3.02
436 437 6.295859 GGGGGCTAGAAAATTTCATTTGAAGT 60.296 38.462 8.55 0.00 35.21 3.01
437 438 6.591448 GGGGCTAGAAAATTTCATTTGAAGTG 59.409 38.462 8.55 0.00 35.21 3.16
438 439 6.091305 GGGCTAGAAAATTTCATTTGAAGTGC 59.909 38.462 8.55 0.00 35.21 4.40
439 440 6.091305 GGCTAGAAAATTTCATTTGAAGTGCC 59.909 38.462 8.55 4.41 35.21 5.01
440 441 6.870439 GCTAGAAAATTTCATTTGAAGTGCCT 59.130 34.615 8.55 0.00 35.21 4.75
441 442 8.028938 GCTAGAAAATTTCATTTGAAGTGCCTA 58.971 33.333 8.55 0.00 35.21 3.93
448 449 7.572523 TTTCATTTGAAGTGCCTATATGAGG 57.427 36.000 0.00 0.00 40.88 3.86
449 450 5.624159 TCATTTGAAGTGCCTATATGAGGG 58.376 41.667 0.00 0.00 46.81 4.30
450 451 5.369404 TCATTTGAAGTGCCTATATGAGGGA 59.631 40.000 0.00 0.00 46.81 4.20
489 490 5.163713 GCACCCTCAGATCTTTGTCATTTAC 60.164 44.000 0.00 0.00 0.00 2.01
497 498 4.136517 TCTTTGTCATTTACGTTTCGCC 57.863 40.909 0.00 0.00 0.00 5.54
498 499 2.973419 TTGTCATTTACGTTTCGCCC 57.027 45.000 0.00 0.00 0.00 6.13
522 523 3.189287 CGCTGGTTTTTGTAGATGCTCTT 59.811 43.478 0.00 0.00 0.00 2.85
523 524 4.391830 CGCTGGTTTTTGTAGATGCTCTTA 59.608 41.667 0.00 0.00 0.00 2.10
524 525 5.106712 CGCTGGTTTTTGTAGATGCTCTTAA 60.107 40.000 0.00 0.00 0.00 1.85
525 526 6.567701 CGCTGGTTTTTGTAGATGCTCTTAAA 60.568 38.462 0.00 0.00 0.00 1.52
547 557 0.178068 GTTGCTAGGCCGAGAATGGA 59.822 55.000 18.16 0.00 0.00 3.41
549 559 1.301322 GCTAGGCCGAGAATGGAGC 60.301 63.158 18.16 3.80 0.00 4.70
556 566 1.069204 GCCGAGAATGGAGCTGTGATA 59.931 52.381 0.00 0.00 0.00 2.15
557 567 2.483714 GCCGAGAATGGAGCTGTGATAA 60.484 50.000 0.00 0.00 0.00 1.75
558 568 3.797039 CCGAGAATGGAGCTGTGATAAA 58.203 45.455 0.00 0.00 0.00 1.40
676 686 3.003173 TAGCAGGCCAGCTTCCGT 61.003 61.111 29.00 5.96 43.70 4.69
702 712 0.318784 CCGCACGCTAATCCTCTACC 60.319 60.000 0.00 0.00 0.00 3.18
723 733 0.463833 CCCCTAATCGCACCACCTTC 60.464 60.000 0.00 0.00 0.00 3.46
748 766 1.421646 CTCTCTCTCTCTCTCCCCTCC 59.578 61.905 0.00 0.00 0.00 4.30
795 813 1.555075 CAACTGCCCTTCCTGCTACTA 59.445 52.381 0.00 0.00 0.00 1.82
807 825 2.544694 CCTGCTACTAGCGACTGATTGG 60.545 54.545 3.59 0.00 46.26 3.16
815 833 1.880340 CGACTGATTGGAGCTCGCC 60.880 63.158 7.83 0.00 0.00 5.54
857 875 2.507110 TTTCTTCTCCGCCCAGCTCG 62.507 60.000 0.00 0.00 0.00 5.03
876 894 2.182030 CTCCTCCCTCGTTCGCAC 59.818 66.667 0.00 0.00 0.00 5.34
909 927 0.032130 TTCTCGCACACTCACACTCC 59.968 55.000 0.00 0.00 0.00 3.85
966 984 1.654105 CCAGTGCTCTTTAAGTACGCG 59.346 52.381 3.53 3.53 44.56 6.01
968 986 0.369248 GTGCTCTTTAAGTACGCGGC 59.631 55.000 12.47 2.30 30.60 6.53
981 999 3.969802 GCGGCACACAAGCTTGCT 61.970 61.111 26.27 10.81 38.85 3.91
1056 1074 2.522680 GGCATGGGAATGGGCTCC 60.523 66.667 0.00 0.00 34.41 4.70
1085 1103 4.657824 CTCCAACGTCCACGCCGT 62.658 66.667 0.00 0.00 44.43 5.68
1185 1203 2.520904 GCGCGTGGATGAGCTTCTC 61.521 63.158 8.43 0.00 0.00 2.87
1438 1468 4.081761 CGTTAAATCGTGTGCATTCTGAC 58.918 43.478 0.00 0.00 0.00 3.51
1439 1469 4.376920 CGTTAAATCGTGTGCATTCTGACA 60.377 41.667 0.00 0.00 0.00 3.58
1440 1470 3.542712 AAATCGTGTGCATTCTGACAC 57.457 42.857 0.00 0.00 39.31 3.67
1480 1510 3.005554 CTGCTGACCTTACCTGAATGTG 58.994 50.000 0.00 0.00 0.00 3.21
1487 1517 6.636705 TGACCTTACCTGAATGTGTATGTAC 58.363 40.000 0.00 0.00 0.00 2.90
1579 1609 3.381045 GACATGCCGAATTACTCATCGA 58.619 45.455 0.00 0.00 41.43 3.59
1773 1830 2.749044 TCCGACTTCCCGTCCTCG 60.749 66.667 0.00 0.00 39.56 4.63
1833 1890 1.376037 CAAGAAGCAGGGACCCGTC 60.376 63.158 4.40 0.39 0.00 4.79
2025 2082 2.738521 CCCACGTTCCTGCTGACG 60.739 66.667 3.74 3.74 44.34 4.35
2466 2535 4.580868 TCCAACGCTGAATTGTGGTATAA 58.419 39.130 0.00 0.00 0.00 0.98
2482 2551 8.251750 TGTGGTATAATTTCTCAAGAACTTCG 57.748 34.615 0.00 0.00 33.13 3.79
2550 2621 5.875359 ACCAGAGTTTCACGGATTATTCTTC 59.125 40.000 0.00 0.00 0.00 2.87
2573 2644 0.532573 TGTCAGGATTCGTCTCTGCC 59.467 55.000 0.00 0.00 0.00 4.85
2608 2681 2.106566 TCAAACTGGCTGCTTTTTCCA 58.893 42.857 0.00 0.00 0.00 3.53
2623 2696 3.598019 TTTCCATGGCAAAATCTGAGC 57.402 42.857 6.96 0.00 0.00 4.26
2625 2698 1.097232 CCATGGCAAAATCTGAGCGA 58.903 50.000 0.00 0.00 0.00 4.93
2673 2746 2.032302 CGAGTGCCACTAGCTACAGTAG 59.968 54.545 0.00 2.85 44.23 2.57
2675 2748 3.432378 AGTGCCACTAGCTACAGTAGTT 58.568 45.455 9.42 5.82 44.23 2.24
2738 2816 0.540365 AGTGTCTTGGCACATTGGGG 60.540 55.000 8.11 0.00 41.52 4.96
2836 2914 1.871039 TGGCGAGAAAAAGAAAGACGG 59.129 47.619 0.00 0.00 0.00 4.79
2840 2918 2.349532 CGAGAAAAAGAAAGACGGGTGC 60.350 50.000 0.00 0.00 0.00 5.01
2969 3047 5.163561 CCTCATTACGCTTCTCTTCTCTCTT 60.164 44.000 0.00 0.00 0.00 2.85
2970 3048 5.885881 TCATTACGCTTCTCTTCTCTCTTC 58.114 41.667 0.00 0.00 0.00 2.87
2971 3049 5.650266 TCATTACGCTTCTCTTCTCTCTTCT 59.350 40.000 0.00 0.00 0.00 2.85
2972 3050 5.554822 TTACGCTTCTCTTCTCTCTTCTC 57.445 43.478 0.00 0.00 0.00 2.87
2973 3051 3.686016 ACGCTTCTCTTCTCTCTTCTCT 58.314 45.455 0.00 0.00 0.00 3.10
2974 3052 3.689649 ACGCTTCTCTTCTCTCTTCTCTC 59.310 47.826 0.00 0.00 0.00 3.20
2975 3053 3.941483 CGCTTCTCTTCTCTCTTCTCTCT 59.059 47.826 0.00 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.454678 ACTGTTCACTCAAGCTCATTTGA 58.545 39.130 0.00 0.00 35.83 2.69
11 12 4.825546 ACTGTTCACTCAAGCTCATTTG 57.174 40.909 0.00 0.00 0.00 2.32
12 13 6.942532 TTTACTGTTCACTCAAGCTCATTT 57.057 33.333 0.00 0.00 0.00 2.32
13 14 7.446625 AGAATTTACTGTTCACTCAAGCTCATT 59.553 33.333 0.00 0.00 0.00 2.57
14 15 6.939163 AGAATTTACTGTTCACTCAAGCTCAT 59.061 34.615 0.00 0.00 0.00 2.90
15 16 6.291377 AGAATTTACTGTTCACTCAAGCTCA 58.709 36.000 0.00 0.00 0.00 4.26
16 17 6.793492 AGAATTTACTGTTCACTCAAGCTC 57.207 37.500 0.00 0.00 0.00 4.09
17 18 8.677148 TTTAGAATTTACTGTTCACTCAAGCT 57.323 30.769 0.00 0.00 0.00 3.74
18 19 9.730420 TTTTTAGAATTTACTGTTCACTCAAGC 57.270 29.630 0.00 0.00 0.00 4.01
52 53 9.797556 GCCACGAAAATAAAATAGTTTCCTTAT 57.202 29.630 0.00 0.00 38.98 1.73
53 54 8.794553 TGCCACGAAAATAAAATAGTTTCCTTA 58.205 29.630 0.00 0.00 38.98 2.69
54 55 7.662897 TGCCACGAAAATAAAATAGTTTCCTT 58.337 30.769 0.00 0.00 38.98 3.36
55 56 7.222000 TGCCACGAAAATAAAATAGTTTCCT 57.778 32.000 0.00 0.00 38.98 3.36
56 57 7.876896 TTGCCACGAAAATAAAATAGTTTCC 57.123 32.000 0.00 0.00 38.98 3.13
57 58 8.756864 TGTTTGCCACGAAAATAAAATAGTTTC 58.243 29.630 0.00 1.38 38.85 2.78
58 59 8.544597 GTGTTTGCCACGAAAATAAAATAGTTT 58.455 29.630 0.00 0.00 33.61 2.66
59 60 8.067780 GTGTTTGCCACGAAAATAAAATAGTT 57.932 30.769 0.00 0.00 33.61 2.24
60 61 7.631915 GTGTTTGCCACGAAAATAAAATAGT 57.368 32.000 0.00 0.00 33.61 2.12
74 75 5.630680 CAGAATATTTGTCAGTGTTTGCCAC 59.369 40.000 0.00 0.00 44.89 5.01
75 76 5.278907 CCAGAATATTTGTCAGTGTTTGCCA 60.279 40.000 0.00 0.00 0.00 4.92
76 77 5.163513 CCAGAATATTTGTCAGTGTTTGCC 58.836 41.667 0.00 0.00 0.00 4.52
77 78 5.163513 CCCAGAATATTTGTCAGTGTTTGC 58.836 41.667 0.00 0.00 0.00 3.68
78 79 6.151691 CACCCAGAATATTTGTCAGTGTTTG 58.848 40.000 0.00 0.00 0.00 2.93
79 80 5.833131 ACACCCAGAATATTTGTCAGTGTTT 59.167 36.000 6.46 0.00 0.00 2.83
80 81 5.385198 ACACCCAGAATATTTGTCAGTGTT 58.615 37.500 6.46 0.00 0.00 3.32
81 82 4.985538 ACACCCAGAATATTTGTCAGTGT 58.014 39.130 6.46 6.46 0.00 3.55
82 83 5.390885 CGAACACCCAGAATATTTGTCAGTG 60.391 44.000 0.00 0.00 0.00 3.66
83 84 4.695455 CGAACACCCAGAATATTTGTCAGT 59.305 41.667 0.00 0.00 0.00 3.41
84 85 4.695455 ACGAACACCCAGAATATTTGTCAG 59.305 41.667 0.00 0.00 0.00 3.51
85 86 4.647611 ACGAACACCCAGAATATTTGTCA 58.352 39.130 0.00 0.00 0.00 3.58
86 87 6.730960 TTACGAACACCCAGAATATTTGTC 57.269 37.500 0.00 0.00 0.00 3.18
87 88 7.696992 ATTTACGAACACCCAGAATATTTGT 57.303 32.000 0.00 0.00 0.00 2.83
88 89 8.980143 AAATTTACGAACACCCAGAATATTTG 57.020 30.769 0.00 0.00 0.00 2.32
89 90 9.990360 AAAAATTTACGAACACCCAGAATATTT 57.010 25.926 0.00 0.00 0.00 1.40
93 94 8.798402 TGATAAAAATTTACGAACACCCAGAAT 58.202 29.630 0.00 0.00 0.00 2.40
94 95 8.167605 TGATAAAAATTTACGAACACCCAGAA 57.832 30.769 0.00 0.00 0.00 3.02
95 96 7.747155 TGATAAAAATTTACGAACACCCAGA 57.253 32.000 0.00 0.00 0.00 3.86
96 97 8.240682 TCATGATAAAAATTTACGAACACCCAG 58.759 33.333 0.00 0.00 0.00 4.45
97 98 8.112016 TCATGATAAAAATTTACGAACACCCA 57.888 30.769 0.00 0.00 0.00 4.51
98 99 8.455682 TCTCATGATAAAAATTTACGAACACCC 58.544 33.333 0.00 0.00 0.00 4.61
99 100 9.834628 TTCTCATGATAAAAATTTACGAACACC 57.165 29.630 0.00 0.00 0.00 4.16
114 115 9.288576 ACTTTCACAAATGTCTTCTCATGATAA 57.711 29.630 0.00 0.00 0.00 1.75
115 116 8.853077 ACTTTCACAAATGTCTTCTCATGATA 57.147 30.769 0.00 0.00 0.00 2.15
116 117 7.756395 ACTTTCACAAATGTCTTCTCATGAT 57.244 32.000 0.00 0.00 0.00 2.45
117 118 8.675705 TTACTTTCACAAATGTCTTCTCATGA 57.324 30.769 0.00 0.00 0.00 3.07
120 121 9.996554 TCTATTACTTTCACAAATGTCTTCTCA 57.003 29.630 0.00 0.00 0.00 3.27
152 153 9.586435 GCACTTTAGGAGCATTTATTATTTTGT 57.414 29.630 0.00 0.00 0.00 2.83
153 154 9.807649 AGCACTTTAGGAGCATTTATTATTTTG 57.192 29.630 0.00 0.00 0.00 2.44
160 161 9.189156 TGAAATTAGCACTTTAGGAGCATTTAT 57.811 29.630 0.00 0.00 0.00 1.40
161 162 8.574251 TGAAATTAGCACTTTAGGAGCATTTA 57.426 30.769 0.00 0.00 0.00 1.40
162 163 7.466746 TGAAATTAGCACTTTAGGAGCATTT 57.533 32.000 0.00 0.00 0.00 2.32
163 164 7.466746 TTGAAATTAGCACTTTAGGAGCATT 57.533 32.000 0.00 0.00 0.00 3.56
164 165 7.466746 TTTGAAATTAGCACTTTAGGAGCAT 57.533 32.000 0.00 0.00 0.00 3.79
165 166 6.892658 TTTGAAATTAGCACTTTAGGAGCA 57.107 33.333 0.00 0.00 0.00 4.26
166 167 8.763049 ATTTTTGAAATTAGCACTTTAGGAGC 57.237 30.769 0.00 0.00 0.00 4.70
191 192 9.868277 AAACAACAAAATCAACACTCTGAAATA 57.132 25.926 0.00 0.00 0.00 1.40
192 193 8.776376 AAACAACAAAATCAACACTCTGAAAT 57.224 26.923 0.00 0.00 0.00 2.17
193 194 8.600449 AAAACAACAAAATCAACACTCTGAAA 57.400 26.923 0.00 0.00 0.00 2.69
194 195 8.600449 AAAAACAACAAAATCAACACTCTGAA 57.400 26.923 0.00 0.00 0.00 3.02
195 196 7.330700 GGAAAAACAACAAAATCAACACTCTGA 59.669 33.333 0.00 0.00 0.00 3.27
196 197 7.117523 TGGAAAAACAACAAAATCAACACTCTG 59.882 33.333 0.00 0.00 0.00 3.35
197 198 7.117667 GTGGAAAAACAACAAAATCAACACTCT 59.882 33.333 0.00 0.00 0.00 3.24
198 199 7.233689 GTGGAAAAACAACAAAATCAACACTC 58.766 34.615 0.00 0.00 0.00 3.51
199 200 6.128688 CGTGGAAAAACAACAAAATCAACACT 60.129 34.615 0.00 0.00 0.00 3.55
200 201 6.012482 CGTGGAAAAACAACAAAATCAACAC 58.988 36.000 0.00 0.00 0.00 3.32
201 202 5.120830 CCGTGGAAAAACAACAAAATCAACA 59.879 36.000 0.00 0.00 0.00 3.33
202 203 5.555552 CCGTGGAAAAACAACAAAATCAAC 58.444 37.500 0.00 0.00 0.00 3.18
203 204 4.093556 GCCGTGGAAAAACAACAAAATCAA 59.906 37.500 0.00 0.00 0.00 2.57
204 205 3.619038 GCCGTGGAAAAACAACAAAATCA 59.381 39.130 0.00 0.00 0.00 2.57
205 206 3.868661 AGCCGTGGAAAAACAACAAAATC 59.131 39.130 0.00 0.00 0.00 2.17
206 207 3.867857 AGCCGTGGAAAAACAACAAAAT 58.132 36.364 0.00 0.00 0.00 1.82
207 208 3.320673 AGCCGTGGAAAAACAACAAAA 57.679 38.095 0.00 0.00 0.00 2.44
208 209 3.254892 GAAGCCGTGGAAAAACAACAAA 58.745 40.909 0.00 0.00 0.00 2.83
209 210 2.231478 TGAAGCCGTGGAAAAACAACAA 59.769 40.909 0.00 0.00 0.00 2.83
210 211 1.819288 TGAAGCCGTGGAAAAACAACA 59.181 42.857 0.00 0.00 0.00 3.33
211 212 2.570442 TGAAGCCGTGGAAAAACAAC 57.430 45.000 0.00 0.00 0.00 3.32
212 213 2.732597 CGTTGAAGCCGTGGAAAAACAA 60.733 45.455 0.00 0.00 0.00 2.83
213 214 1.202200 CGTTGAAGCCGTGGAAAAACA 60.202 47.619 0.00 0.00 0.00 2.83
214 215 1.472990 CGTTGAAGCCGTGGAAAAAC 58.527 50.000 0.00 0.00 0.00 2.43
215 216 0.382515 CCGTTGAAGCCGTGGAAAAA 59.617 50.000 0.00 0.00 0.00 1.94
216 217 0.464013 TCCGTTGAAGCCGTGGAAAA 60.464 50.000 0.00 0.00 0.00 2.29
217 218 0.250553 ATCCGTTGAAGCCGTGGAAA 60.251 50.000 0.00 0.00 31.42 3.13
218 219 0.953471 CATCCGTTGAAGCCGTGGAA 60.953 55.000 0.00 0.00 31.42 3.53
219 220 1.375396 CATCCGTTGAAGCCGTGGA 60.375 57.895 0.00 0.00 0.00 4.02
220 221 1.635663 GACATCCGTTGAAGCCGTGG 61.636 60.000 0.00 0.00 0.00 4.94
221 222 0.948623 TGACATCCGTTGAAGCCGTG 60.949 55.000 0.00 0.00 0.00 4.94
222 223 0.036388 ATGACATCCGTTGAAGCCGT 60.036 50.000 0.00 0.00 0.00 5.68
223 224 1.062587 GAATGACATCCGTTGAAGCCG 59.937 52.381 0.00 0.00 0.00 5.52
224 225 1.401905 GGAATGACATCCGTTGAAGCC 59.598 52.381 0.00 0.00 0.00 4.35
225 226 2.083774 TGGAATGACATCCGTTGAAGC 58.916 47.619 0.00 0.00 42.76 3.86
239 240 5.125900 TGCTTGTAGATTTCACCATGGAATG 59.874 40.000 21.47 7.48 46.21 2.67
240 241 5.126061 GTGCTTGTAGATTTCACCATGGAAT 59.874 40.000 21.47 7.93 0.00 3.01
241 242 4.458989 GTGCTTGTAGATTTCACCATGGAA 59.541 41.667 21.47 2.07 0.00 3.53
242 243 4.009675 GTGCTTGTAGATTTCACCATGGA 58.990 43.478 21.47 0.00 0.00 3.41
243 244 4.012374 AGTGCTTGTAGATTTCACCATGG 58.988 43.478 11.19 11.19 0.00 3.66
244 245 4.696877 TGAGTGCTTGTAGATTTCACCATG 59.303 41.667 0.00 0.00 0.00 3.66
245 246 4.910195 TGAGTGCTTGTAGATTTCACCAT 58.090 39.130 0.00 0.00 0.00 3.55
246 247 4.350368 TGAGTGCTTGTAGATTTCACCA 57.650 40.909 0.00 0.00 0.00 4.17
247 248 5.452777 GTTTGAGTGCTTGTAGATTTCACC 58.547 41.667 0.00 0.00 0.00 4.02
248 249 5.008613 TGGTTTGAGTGCTTGTAGATTTCAC 59.991 40.000 0.00 0.00 0.00 3.18
249 250 5.129634 TGGTTTGAGTGCTTGTAGATTTCA 58.870 37.500 0.00 0.00 0.00 2.69
250 251 5.689383 TGGTTTGAGTGCTTGTAGATTTC 57.311 39.130 0.00 0.00 0.00 2.17
251 252 6.568462 CGAATGGTTTGAGTGCTTGTAGATTT 60.568 38.462 0.00 0.00 0.00 2.17
252 253 5.106555 CGAATGGTTTGAGTGCTTGTAGATT 60.107 40.000 0.00 0.00 0.00 2.40
253 254 4.393062 CGAATGGTTTGAGTGCTTGTAGAT 59.607 41.667 0.00 0.00 0.00 1.98
254 255 3.745975 CGAATGGTTTGAGTGCTTGTAGA 59.254 43.478 0.00 0.00 0.00 2.59
255 256 3.667960 GCGAATGGTTTGAGTGCTTGTAG 60.668 47.826 0.00 0.00 0.00 2.74
256 257 2.225491 GCGAATGGTTTGAGTGCTTGTA 59.775 45.455 0.00 0.00 0.00 2.41
257 258 1.001378 GCGAATGGTTTGAGTGCTTGT 60.001 47.619 0.00 0.00 0.00 3.16
258 259 1.267806 AGCGAATGGTTTGAGTGCTTG 59.732 47.619 0.00 0.00 0.00 4.01
259 260 1.609208 AGCGAATGGTTTGAGTGCTT 58.391 45.000 0.00 0.00 0.00 3.91
260 261 2.472695 TAGCGAATGGTTTGAGTGCT 57.527 45.000 0.00 0.00 35.12 4.40
261 262 3.058224 ACTTTAGCGAATGGTTTGAGTGC 60.058 43.478 0.00 0.00 0.00 4.40
262 263 4.749245 ACTTTAGCGAATGGTTTGAGTG 57.251 40.909 0.00 0.00 0.00 3.51
263 264 5.298276 TCAAACTTTAGCGAATGGTTTGAGT 59.702 36.000 23.45 5.15 45.60 3.41
264 265 5.757886 TCAAACTTTAGCGAATGGTTTGAG 58.242 37.500 23.45 10.61 45.60 3.02
266 267 7.060633 GTGTATCAAACTTTAGCGAATGGTTTG 59.939 37.037 21.08 21.08 44.33 2.93
267 268 7.081976 GTGTATCAAACTTTAGCGAATGGTTT 58.918 34.615 0.00 0.39 0.00 3.27
268 269 6.205853 TGTGTATCAAACTTTAGCGAATGGTT 59.794 34.615 0.00 0.00 0.00 3.67
269 270 5.703592 TGTGTATCAAACTTTAGCGAATGGT 59.296 36.000 0.00 0.00 0.00 3.55
270 271 6.021596 GTGTGTATCAAACTTTAGCGAATGG 58.978 40.000 0.00 0.00 0.00 3.16
271 272 6.598525 TGTGTGTATCAAACTTTAGCGAATG 58.401 36.000 0.00 0.00 0.00 2.67
272 273 6.795098 TGTGTGTATCAAACTTTAGCGAAT 57.205 33.333 0.00 0.00 0.00 3.34
273 274 6.606234 TTGTGTGTATCAAACTTTAGCGAA 57.394 33.333 0.00 0.00 0.00 4.70
274 275 6.606234 TTTGTGTGTATCAAACTTTAGCGA 57.394 33.333 0.00 0.00 31.17 4.93
275 276 7.851822 ATTTTGTGTGTATCAAACTTTAGCG 57.148 32.000 0.00 0.00 35.05 4.26
276 277 9.243637 TGAATTTTGTGTGTATCAAACTTTAGC 57.756 29.630 0.00 0.00 35.05 3.09
281 282 9.260002 GGATTTGAATTTTGTGTGTATCAAACT 57.740 29.630 0.00 0.00 38.95 2.66
282 283 9.260002 AGGATTTGAATTTTGTGTGTATCAAAC 57.740 29.630 0.00 0.00 38.95 2.93
283 284 9.829507 AAGGATTTGAATTTTGTGTGTATCAAA 57.170 25.926 0.00 0.00 40.01 2.69
284 285 9.474920 GAAGGATTTGAATTTTGTGTGTATCAA 57.525 29.630 0.00 0.00 0.00 2.57
285 286 8.637099 TGAAGGATTTGAATTTTGTGTGTATCA 58.363 29.630 0.00 0.00 0.00 2.15
286 287 9.132521 CTGAAGGATTTGAATTTTGTGTGTATC 57.867 33.333 0.00 0.00 0.00 2.24
287 288 8.859090 TCTGAAGGATTTGAATTTTGTGTGTAT 58.141 29.630 0.00 0.00 0.00 2.29
288 289 8.231692 TCTGAAGGATTTGAATTTTGTGTGTA 57.768 30.769 0.00 0.00 0.00 2.90
289 290 7.111247 TCTGAAGGATTTGAATTTTGTGTGT 57.889 32.000 0.00 0.00 0.00 3.72
290 291 8.597662 ATTCTGAAGGATTTGAATTTTGTGTG 57.402 30.769 0.00 0.00 31.05 3.82
291 292 9.617523 AAATTCTGAAGGATTTGAATTTTGTGT 57.382 25.926 0.00 0.00 42.77 3.72
292 293 9.872757 CAAATTCTGAAGGATTTGAATTTTGTG 57.127 29.630 16.12 0.00 42.77 3.33
293 294 9.617523 ACAAATTCTGAAGGATTTGAATTTTGT 57.382 25.926 24.51 11.61 42.77 2.83
323 324 9.624697 CTCGAGATGAACATTAAATTCCAAAAA 57.375 29.630 6.58 0.00 0.00 1.94
324 325 7.754924 GCTCGAGATGAACATTAAATTCCAAAA 59.245 33.333 18.75 0.00 0.00 2.44
325 326 7.121168 AGCTCGAGATGAACATTAAATTCCAAA 59.879 33.333 18.75 0.00 0.00 3.28
326 327 6.599244 AGCTCGAGATGAACATTAAATTCCAA 59.401 34.615 18.75 0.00 0.00 3.53
327 328 6.115446 AGCTCGAGATGAACATTAAATTCCA 58.885 36.000 18.75 0.00 0.00 3.53
328 329 6.258727 TGAGCTCGAGATGAACATTAAATTCC 59.741 38.462 18.75 0.00 0.00 3.01
329 330 7.239166 TGAGCTCGAGATGAACATTAAATTC 57.761 36.000 18.75 0.00 0.00 2.17
330 331 7.798596 ATGAGCTCGAGATGAACATTAAATT 57.201 32.000 18.75 0.00 0.00 1.82
331 332 7.798596 AATGAGCTCGAGATGAACATTAAAT 57.201 32.000 18.75 0.00 0.00 1.40
332 333 7.615582 AAATGAGCTCGAGATGAACATTAAA 57.384 32.000 18.75 0.00 30.38 1.52
333 334 8.716646 TTAAATGAGCTCGAGATGAACATTAA 57.283 30.769 18.75 9.04 30.38 1.40
334 335 7.042456 GCTTAAATGAGCTCGAGATGAACATTA 60.042 37.037 18.75 3.05 39.57 1.90
335 336 6.238320 GCTTAAATGAGCTCGAGATGAACATT 60.238 38.462 18.75 13.20 39.57 2.71
336 337 5.236047 GCTTAAATGAGCTCGAGATGAACAT 59.764 40.000 18.75 7.10 39.57 2.71
337 338 4.568359 GCTTAAATGAGCTCGAGATGAACA 59.432 41.667 18.75 4.58 39.57 3.18
338 339 5.076911 GCTTAAATGAGCTCGAGATGAAC 57.923 43.478 18.75 0.00 39.57 3.18
349 350 2.317530 ACCTCGGAGCTTAAATGAGC 57.682 50.000 0.00 0.00 43.02 4.26
350 351 4.920640 TCTACCTCGGAGCTTAAATGAG 57.079 45.455 0.00 0.00 0.00 2.90
351 352 4.954202 TCTTCTACCTCGGAGCTTAAATGA 59.046 41.667 0.00 0.00 0.00 2.57
352 353 5.263968 TCTTCTACCTCGGAGCTTAAATG 57.736 43.478 0.00 0.00 0.00 2.32
353 354 4.202172 GCTCTTCTACCTCGGAGCTTAAAT 60.202 45.833 0.00 0.00 45.15 1.40
354 355 3.130693 GCTCTTCTACCTCGGAGCTTAAA 59.869 47.826 0.00 0.00 45.15 1.52
355 356 2.688958 GCTCTTCTACCTCGGAGCTTAA 59.311 50.000 0.00 0.00 45.15 1.85
356 357 2.299521 GCTCTTCTACCTCGGAGCTTA 58.700 52.381 0.00 0.00 45.15 3.09
357 358 1.107945 GCTCTTCTACCTCGGAGCTT 58.892 55.000 0.00 0.00 45.15 3.74
358 359 2.801859 GCTCTTCTACCTCGGAGCT 58.198 57.895 0.00 0.00 45.15 4.09
360 361 1.757682 AGTGCTCTTCTACCTCGGAG 58.242 55.000 0.00 0.00 0.00 4.63
361 362 2.217510 AAGTGCTCTTCTACCTCGGA 57.782 50.000 0.00 0.00 0.00 4.55
362 363 2.494073 AGAAAGTGCTCTTCTACCTCGG 59.506 50.000 0.74 0.00 32.90 4.63
363 364 3.191581 TGAGAAAGTGCTCTTCTACCTCG 59.808 47.826 0.74 0.00 35.91 4.63
364 365 4.792521 TGAGAAAGTGCTCTTCTACCTC 57.207 45.455 0.74 7.20 35.91 3.85
365 366 4.345257 TGTTGAGAAAGTGCTCTTCTACCT 59.655 41.667 0.74 0.00 35.91 3.08
366 367 4.632153 TGTTGAGAAAGTGCTCTTCTACC 58.368 43.478 0.74 0.00 35.91 3.18
367 368 5.332656 CGTTGTTGAGAAAGTGCTCTTCTAC 60.333 44.000 0.74 0.00 35.91 2.59
368 369 4.745125 CGTTGTTGAGAAAGTGCTCTTCTA 59.255 41.667 0.74 0.00 35.91 2.10
369 370 3.557595 CGTTGTTGAGAAAGTGCTCTTCT 59.442 43.478 0.74 1.33 35.91 2.85
370 371 3.303395 CCGTTGTTGAGAAAGTGCTCTTC 60.303 47.826 0.74 0.00 35.91 2.87
371 372 2.614057 CCGTTGTTGAGAAAGTGCTCTT 59.386 45.455 0.00 0.00 35.91 2.85
372 373 2.158957 TCCGTTGTTGAGAAAGTGCTCT 60.159 45.455 0.00 0.00 35.91 4.09
373 374 2.210116 TCCGTTGTTGAGAAAGTGCTC 58.790 47.619 0.00 0.00 35.46 4.26
374 375 2.213499 CTCCGTTGTTGAGAAAGTGCT 58.787 47.619 0.00 0.00 31.26 4.40
375 376 1.334149 GCTCCGTTGTTGAGAAAGTGC 60.334 52.381 0.00 0.00 31.26 4.40
376 377 2.213499 AGCTCCGTTGTTGAGAAAGTG 58.787 47.619 0.00 0.00 31.26 3.16
377 378 2.622064 AGCTCCGTTGTTGAGAAAGT 57.378 45.000 0.00 0.00 31.26 2.66
378 379 3.997021 ACATAGCTCCGTTGTTGAGAAAG 59.003 43.478 0.00 0.00 31.26 2.62
379 380 4.002906 ACATAGCTCCGTTGTTGAGAAA 57.997 40.909 0.00 0.00 31.26 2.52
380 381 3.678056 ACATAGCTCCGTTGTTGAGAA 57.322 42.857 0.00 0.00 31.26 2.87
381 382 3.678056 AACATAGCTCCGTTGTTGAGA 57.322 42.857 0.00 0.00 32.61 3.27
385 386 2.699954 CCTCAACATAGCTCCGTTGTT 58.300 47.619 21.25 11.51 42.48 2.83
386 387 1.676014 GCCTCAACATAGCTCCGTTGT 60.676 52.381 21.25 6.83 42.48 3.32
387 388 1.009829 GCCTCAACATAGCTCCGTTG 58.990 55.000 17.85 17.85 43.09 4.10
388 389 0.460284 CGCCTCAACATAGCTCCGTT 60.460 55.000 0.00 0.00 0.00 4.44
389 390 1.141881 CGCCTCAACATAGCTCCGT 59.858 57.895 0.00 0.00 0.00 4.69
390 391 0.596083 CTCGCCTCAACATAGCTCCG 60.596 60.000 0.00 0.00 0.00 4.63
391 392 0.249657 CCTCGCCTCAACATAGCTCC 60.250 60.000 0.00 0.00 0.00 4.70
392 393 0.249657 CCCTCGCCTCAACATAGCTC 60.250 60.000 0.00 0.00 0.00 4.09
393 394 1.690219 CCCCTCGCCTCAACATAGCT 61.690 60.000 0.00 0.00 0.00 3.32
394 395 1.227674 CCCCTCGCCTCAACATAGC 60.228 63.158 0.00 0.00 0.00 2.97
395 396 1.447643 CCCCCTCGCCTCAACATAG 59.552 63.158 0.00 0.00 0.00 2.23
396 397 3.642078 CCCCCTCGCCTCAACATA 58.358 61.111 0.00 0.00 0.00 2.29
411 412 5.675684 TCAAATGAAATTTTCTAGCCCCC 57.324 39.130 10.33 0.00 46.10 5.40
412 413 6.591448 CACTTCAAATGAAATTTTCTAGCCCC 59.409 38.462 10.33 0.00 46.10 5.80
413 414 6.091305 GCACTTCAAATGAAATTTTCTAGCCC 59.909 38.462 10.33 0.00 46.10 5.19
414 415 6.091305 GGCACTTCAAATGAAATTTTCTAGCC 59.909 38.462 10.33 0.00 46.10 3.93
415 416 6.870439 AGGCACTTCAAATGAAATTTTCTAGC 59.130 34.615 10.33 0.00 38.87 3.42
422 423 8.636213 CCTCATATAGGCACTTCAAATGAAATT 58.364 33.333 0.00 0.00 41.75 1.82
423 424 7.232127 CCCTCATATAGGCACTTCAAATGAAAT 59.768 37.037 0.00 0.00 45.03 2.17
424 425 6.547141 CCCTCATATAGGCACTTCAAATGAAA 59.453 38.462 0.00 0.00 45.03 2.69
425 426 6.064060 CCCTCATATAGGCACTTCAAATGAA 58.936 40.000 0.00 0.00 45.03 2.57
426 427 5.369404 TCCCTCATATAGGCACTTCAAATGA 59.631 40.000 0.00 0.00 45.03 2.57
427 428 5.624159 TCCCTCATATAGGCACTTCAAATG 58.376 41.667 0.00 0.00 45.03 2.32
428 429 5.912149 TCCCTCATATAGGCACTTCAAAT 57.088 39.130 0.00 0.00 45.03 2.32
429 430 5.708736 TTCCCTCATATAGGCACTTCAAA 57.291 39.130 0.00 0.00 45.03 2.69
430 431 5.912149 ATTCCCTCATATAGGCACTTCAA 57.088 39.130 0.00 0.00 45.03 2.69
431 432 7.574021 ATTATTCCCTCATATAGGCACTTCA 57.426 36.000 0.00 0.00 45.03 3.02
432 433 9.606631 CTAATTATTCCCTCATATAGGCACTTC 57.393 37.037 0.00 0.00 45.03 3.01
433 434 8.049721 GCTAATTATTCCCTCATATAGGCACTT 58.950 37.037 0.00 0.00 45.03 3.16
434 435 7.366011 GGCTAATTATTCCCTCATATAGGCACT 60.366 40.741 0.00 0.00 45.03 4.40
435 436 6.768381 GGCTAATTATTCCCTCATATAGGCAC 59.232 42.308 0.00 0.00 45.03 5.01
436 437 6.678411 AGGCTAATTATTCCCTCATATAGGCA 59.322 38.462 0.00 0.00 45.03 4.75
437 438 7.142995 AGGCTAATTATTCCCTCATATAGGC 57.857 40.000 0.00 0.00 45.03 3.93
438 439 9.981460 AAAAGGCTAATTATTCCCTCATATAGG 57.019 33.333 0.00 0.00 46.09 2.57
440 441 9.243105 GCAAAAGGCTAATTATTCCCTCATATA 57.757 33.333 0.00 0.00 40.25 0.86
441 442 7.729881 TGCAAAAGGCTAATTATTCCCTCATAT 59.270 33.333 0.00 0.00 45.15 1.78
442 443 7.014230 GTGCAAAAGGCTAATTATTCCCTCATA 59.986 37.037 0.00 0.00 45.15 2.15
443 444 5.898972 TGCAAAAGGCTAATTATTCCCTCAT 59.101 36.000 0.00 0.00 45.15 2.90
444 445 5.127031 GTGCAAAAGGCTAATTATTCCCTCA 59.873 40.000 0.00 0.00 45.15 3.86
445 446 5.451937 GGTGCAAAAGGCTAATTATTCCCTC 60.452 44.000 0.00 0.00 45.15 4.30
446 447 4.405680 GGTGCAAAAGGCTAATTATTCCCT 59.594 41.667 0.00 0.00 45.15 4.20
447 448 4.442893 GGGTGCAAAAGGCTAATTATTCCC 60.443 45.833 0.00 0.00 45.15 3.97
448 449 4.405680 AGGGTGCAAAAGGCTAATTATTCC 59.594 41.667 0.00 0.00 45.15 3.01
449 450 5.127031 TGAGGGTGCAAAAGGCTAATTATTC 59.873 40.000 0.00 0.00 45.15 1.75
450 451 5.022787 TGAGGGTGCAAAAGGCTAATTATT 58.977 37.500 0.00 0.00 45.15 1.40
451 452 4.609301 TGAGGGTGCAAAAGGCTAATTAT 58.391 39.130 0.00 0.00 45.15 1.28
452 453 4.016444 CTGAGGGTGCAAAAGGCTAATTA 58.984 43.478 0.00 0.00 45.15 1.40
453 454 2.827921 CTGAGGGTGCAAAAGGCTAATT 59.172 45.455 0.00 0.00 45.15 1.40
454 455 2.041620 TCTGAGGGTGCAAAAGGCTAAT 59.958 45.455 0.00 0.00 45.15 1.73
455 456 1.423541 TCTGAGGGTGCAAAAGGCTAA 59.576 47.619 0.00 0.00 45.15 3.09
497 498 1.472480 CATCTACAAAAACCAGCGGGG 59.528 52.381 8.08 1.20 44.81 5.73
498 499 1.135402 GCATCTACAAAAACCAGCGGG 60.135 52.381 0.00 0.00 41.29 6.13
522 523 0.459585 CTCGGCCTAGCAACGCTTTA 60.460 55.000 0.00 0.00 40.44 1.85
523 524 1.741770 CTCGGCCTAGCAACGCTTT 60.742 57.895 0.00 0.00 40.44 3.51
524 525 2.125512 CTCGGCCTAGCAACGCTT 60.126 61.111 0.00 0.00 40.44 4.68
525 526 1.961180 ATTCTCGGCCTAGCAACGCT 61.961 55.000 0.00 0.00 43.41 5.07
547 557 5.163663 CGTCTCTCTCTCTTTTATCACAGCT 60.164 44.000 0.00 0.00 0.00 4.24
549 559 5.034152 GCGTCTCTCTCTCTTTTATCACAG 58.966 45.833 0.00 0.00 0.00 3.66
556 566 3.583806 CACATGCGTCTCTCTCTCTTTT 58.416 45.455 0.00 0.00 0.00 2.27
557 567 2.094286 CCACATGCGTCTCTCTCTCTTT 60.094 50.000 0.00 0.00 0.00 2.52
558 568 1.476085 CCACATGCGTCTCTCTCTCTT 59.524 52.381 0.00 0.00 0.00 2.85
665 675 3.978571 GAGGGGAACGGAAGCTGGC 62.979 68.421 0.00 0.00 0.00 4.85
676 686 2.306255 GATTAGCGTGCGGAGGGGAA 62.306 60.000 0.00 0.00 0.00 3.97
723 733 3.545703 GGGAGAGAGAGAGAGAGAGTTG 58.454 54.545 0.00 0.00 0.00 3.16
748 766 7.327275 CGAGATAATTTAATGGAGAGAAGGACG 59.673 40.741 0.00 0.00 0.00 4.79
795 813 1.140589 CGAGCTCCAATCAGTCGCT 59.859 57.895 8.47 0.00 0.00 4.93
807 825 2.402572 GGCTTTGAAGGGCGAGCTC 61.403 63.158 2.73 2.73 35.53 4.09
815 833 4.107051 CGCGCTGGGCTTTGAAGG 62.107 66.667 14.94 0.00 40.44 3.46
857 875 4.516195 GCGAACGAGGGAGGAGGC 62.516 72.222 0.00 0.00 0.00 4.70
865 883 1.722011 ATAAAGTGGTGCGAACGAGG 58.278 50.000 0.00 0.00 0.00 4.63
876 894 4.693566 TGTGCGAGAAGGTTTATAAAGTGG 59.306 41.667 0.00 0.00 0.00 4.00
952 970 1.389106 GTGTGCCGCGTACTTAAAGAG 59.611 52.381 4.92 0.00 0.00 2.85
966 984 2.355481 GCAGCAAGCTTGTGTGCC 60.355 61.111 30.58 19.36 41.88 5.01
1008 1026 1.386525 CCATGGCCATTTCCCACTCG 61.387 60.000 17.92 0.57 34.68 4.18
1056 1074 1.289109 CGTTGGAGGCGTTGTGGTAG 61.289 60.000 0.00 0.00 0.00 3.18
1239 1257 1.761174 GTGGTGATGGTGGTGGAGT 59.239 57.895 0.00 0.00 0.00 3.85
1388 1406 2.232941 CACAATTTCATCTGCAAGGGCT 59.767 45.455 0.00 0.00 41.91 5.19
1395 1413 3.729217 CGATCATGCACAATTTCATCTGC 59.271 43.478 0.00 0.00 0.00 4.26
1440 1470 3.029757 CAGTTCGATGATCACGAGTACG 58.970 50.000 16.18 8.44 45.75 3.67
1441 1471 2.784380 GCAGTTCGATGATCACGAGTAC 59.216 50.000 16.18 13.63 40.72 2.73
1773 1830 2.099831 CTAGGTCGTGCCGTCGTC 59.900 66.667 0.00 0.00 43.70 4.20
2025 2082 0.952984 GGTGAGAGTTGGAGTGCTGC 60.953 60.000 0.00 0.00 0.00 5.25
2251 2308 2.794627 CTAGCTAGCTAGGCTGCGCG 62.795 65.000 34.95 14.78 41.58 6.86
2276 2339 2.299867 GCCTGAGAATTTTGCAAAGGGA 59.700 45.455 12.41 0.00 0.00 4.20
2497 2568 2.096318 GGCCGTTCGTTCGATTAACAAA 60.096 45.455 0.00 0.00 38.03 2.83
2550 2621 1.740585 AGAGACGAATCCTGACACTCG 59.259 52.381 0.00 0.00 37.33 4.18
2585 2656 3.493176 GGAAAAAGCAGCCAGTTTGATGT 60.493 43.478 0.00 0.00 0.00 3.06
2593 2664 0.390735 GCCATGGAAAAAGCAGCCAG 60.391 55.000 18.40 0.00 34.74 4.85
2596 2667 1.881591 TTTGCCATGGAAAAAGCAGC 58.118 45.000 16.10 0.00 36.44 5.25
2608 2681 2.372264 ACATCGCTCAGATTTTGCCAT 58.628 42.857 0.00 0.00 37.52 4.40
2623 2696 0.930310 CATGACCGGCAGTAACATCG 59.070 55.000 0.00 0.00 0.00 3.84
2625 2698 0.035534 TGCATGACCGGCAGTAACAT 60.036 50.000 0.00 0.00 36.11 2.71
2673 2746 2.789203 CGAACGCGCAGGCTCTAAC 61.789 63.158 5.73 0.00 36.88 2.34
2675 2748 4.492160 CCGAACGCGCAGGCTCTA 62.492 66.667 5.73 0.00 36.88 2.43
2730 2808 2.993264 GCTGCAGCACCCCAATGT 60.993 61.111 33.36 0.00 41.59 2.71
2738 2816 1.208614 CGGAGAAAAGCTGCAGCAC 59.791 57.895 38.24 24.86 45.16 4.40
2809 2887 7.166804 CGTCTTTCTTTTTCTCGCCATTAAAAA 59.833 33.333 0.00 0.00 32.72 1.94
2836 2914 4.162690 ATTCCCGGCTCTCGCACC 62.163 66.667 0.00 0.00 38.10 5.01
2840 2918 2.202932 CACCATTCCCGGCTCTCG 60.203 66.667 0.00 0.00 38.88 4.04
2969 3047 6.096141 CACTCCTGCTAATAAGTGAAGAGAGA 59.904 42.308 0.00 0.00 41.26 3.10
2970 3048 6.272318 CACTCCTGCTAATAAGTGAAGAGAG 58.728 44.000 0.00 0.00 41.26 3.20
2971 3049 5.127845 CCACTCCTGCTAATAAGTGAAGAGA 59.872 44.000 3.06 0.00 41.26 3.10
2972 3050 5.355596 CCACTCCTGCTAATAAGTGAAGAG 58.644 45.833 3.06 0.00 41.26 2.85
2973 3051 4.383118 GCCACTCCTGCTAATAAGTGAAGA 60.383 45.833 3.06 0.00 41.26 2.87
2974 3052 3.873952 GCCACTCCTGCTAATAAGTGAAG 59.126 47.826 3.06 0.00 41.26 3.02
2975 3053 3.263170 TGCCACTCCTGCTAATAAGTGAA 59.737 43.478 3.06 0.00 41.26 3.18
3061 3140 1.043116 GCCCCAAGCCATCTTTACCC 61.043 60.000 0.00 0.00 34.35 3.69
3094 3173 2.753043 CACCTGCACTCCATGGCC 60.753 66.667 6.96 0.00 0.00 5.36
3109 3188 3.673484 AGGCCGCATTGCACACAC 61.673 61.111 9.69 0.00 0.00 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.