Multiple sequence alignment - TraesCS1A01G220100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G220100 chr1A 100.000 5025 0 0 1 5025 388945874 388940850 0.000000e+00 9280.0
1 TraesCS1A01G220100 chr1B 94.005 4454 203 36 580 5025 419199200 419194803 0.000000e+00 6687.0
2 TraesCS1A01G220100 chr1B 90.580 414 38 1 14 427 8770604 8771016 9.510000e-152 547.0
3 TraesCS1A01G220100 chr1D 95.600 4045 128 15 983 5025 309460103 309456107 0.000000e+00 6438.0
4 TraesCS1A01G220100 chr1D 93.991 233 13 1 540 771 309460740 309460508 8.000000e-93 351.0
5 TraesCS1A01G220100 chr1D 96.667 120 2 1 800 917 309460509 309460390 1.100000e-46 198.0
6 TraesCS1A01G220100 chr2A 89.930 427 37 4 1 426 95948113 95947692 3.420000e-151 545.0
7 TraesCS1A01G220100 chr7A 89.882 425 39 3 5 426 469014295 469013872 1.230000e-150 544.0
8 TraesCS1A01G220100 chr2B 90.244 410 39 1 14 423 767914076 767914484 7.400000e-148 534.0
9 TraesCS1A01G220100 chr6B 89.855 414 40 2 14 426 422315607 422315195 9.580000e-147 531.0
10 TraesCS1A01G220100 chr6B 84.274 248 37 2 2522 2769 169140714 169140959 1.810000e-59 241.0
11 TraesCS1A01G220100 chr3B 90.000 410 40 1 14 423 810549050 810549458 3.450000e-146 529.0
12 TraesCS1A01G220100 chr3B 85.081 248 35 2 2522 2769 322218661 322218906 8.350000e-63 252.0
13 TraesCS1A01G220100 chr4A 89.024 410 43 2 14 423 707254889 707255296 1.610000e-139 507.0
14 TraesCS1A01G220100 chr4A 85.081 248 35 2 2522 2769 570578574 570578819 8.350000e-63 252.0
15 TraesCS1A01G220100 chr5B 86.933 375 40 8 66 435 545289862 545290232 3.620000e-111 412.0
16 TraesCS1A01G220100 chr5A 85.209 311 25 7 1 310 461734913 461734623 2.940000e-77 300.0
17 TraesCS1A01G220100 chr3D 86.722 241 26 5 194 433 48964689 48964454 3.860000e-66 263.0
18 TraesCS1A01G220100 chr3D 94.286 35 1 1 518 552 188354099 188354132 9.000000e-03 52.8
19 TraesCS1A01G220100 chr4B 85.081 248 34 3 2522 2769 346196553 346196797 3.000000e-62 250.0
20 TraesCS1A01G220100 chr4B 84.739 249 34 4 2522 2769 325306711 325306956 3.890000e-61 246.0
21 TraesCS1A01G220100 chr4B 85.909 220 27 3 2550 2769 349455097 349454882 1.090000e-56 231.0
22 TraesCS1A01G220100 chr3A 85.020 247 35 2 2525 2771 205699820 205699576 3.000000e-62 250.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G220100 chr1A 388940850 388945874 5024 True 9280 9280 100.000000 1 5025 1 chr1A.!!$R1 5024
1 TraesCS1A01G220100 chr1B 419194803 419199200 4397 True 6687 6687 94.005000 580 5025 1 chr1B.!!$R1 4445
2 TraesCS1A01G220100 chr1D 309456107 309460740 4633 True 2329 6438 95.419333 540 5025 3 chr1D.!!$R1 4485

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
243 244 0.030235 AAGGAAAAACACGCTTCGCC 59.970 50.000 0.0 0.0 0.00 5.54 F
505 506 0.034198 TCGGCAGACCAAACGAATGA 59.966 50.000 0.0 0.0 34.57 2.57 F
525 526 0.106335 CAAACATGCAGCCAACCCAA 59.894 50.000 0.0 0.0 0.00 4.12 F
962 965 0.178876 CCCCCAAAATTCCCCACCTT 60.179 55.000 0.0 0.0 0.00 3.50 F
1998 2222 1.166531 GGAGCGGTGTCTGCAAACTT 61.167 55.000 0.0 0.0 33.85 2.66 F
3057 3283 2.107204 AGCACTGATGGGTCTTTCTTGT 59.893 45.455 0.0 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1536 1760 1.416373 GTTTCGAAGTGGAGGTCGAC 58.584 55.000 7.13 7.13 45.35 4.20 R
1761 1985 1.913722 CCTGAAGGATCCAGCAGCT 59.086 57.895 22.00 0.00 37.39 4.24 R
2201 2425 3.603532 TCATTCAAGTCATCCTGCTGAC 58.396 45.455 0.00 0.00 44.78 3.51 R
2870 3094 3.055963 TCCCAAAAATAGGTGCTTGCATG 60.056 43.478 0.00 0.00 0.00 4.06 R
3557 3806 0.535780 TGCTGCTTGTGTTCTCCCTG 60.536 55.000 0.00 0.00 0.00 4.45 R
4401 4655 0.253327 AAAGGAACGAGATGGGCCTC 59.747 55.000 4.53 0.00 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 9.691362 AGCTTGTTGTGGTATGTAATTAAAAAG 57.309 29.630 0.00 0.00 0.00 2.27
88 89 9.471084 GCTTGTTGTGGTATGTAATTAAAAAGT 57.529 29.630 0.00 0.00 0.00 2.66
94 95 9.666626 TGTGGTATGTAATTAAAAAGTTTCGTG 57.333 29.630 0.00 0.00 0.00 4.35
95 96 8.632551 GTGGTATGTAATTAAAAAGTTTCGTGC 58.367 33.333 0.00 0.00 0.00 5.34
96 97 8.569641 TGGTATGTAATTAAAAAGTTTCGTGCT 58.430 29.630 0.00 0.00 0.00 4.40
97 98 9.401873 GGTATGTAATTAAAAAGTTTCGTGCTT 57.598 29.630 0.00 0.00 0.00 3.91
100 101 9.744468 ATGTAATTAAAAAGTTTCGTGCTTCTT 57.256 25.926 0.00 0.00 0.00 2.52
101 102 9.575783 TGTAATTAAAAAGTTTCGTGCTTCTTT 57.424 25.926 0.00 0.00 0.00 2.52
102 103 9.829637 GTAATTAAAAAGTTTCGTGCTTCTTTG 57.170 29.630 0.00 0.00 31.75 2.77
103 104 8.474006 AATTAAAAAGTTTCGTGCTTCTTTGT 57.526 26.923 0.00 0.00 31.75 2.83
104 105 7.876896 TTAAAAAGTTTCGTGCTTCTTTGTT 57.123 28.000 0.00 0.00 31.75 2.83
105 106 6.779115 AAAAAGTTTCGTGCTTCTTTGTTT 57.221 29.167 0.00 0.00 31.75 2.83
106 107 6.389622 AAAAGTTTCGTGCTTCTTTGTTTC 57.610 33.333 0.00 0.00 31.75 2.78
107 108 4.695217 AGTTTCGTGCTTCTTTGTTTCA 57.305 36.364 0.00 0.00 0.00 2.69
108 109 5.054390 AGTTTCGTGCTTCTTTGTTTCAA 57.946 34.783 0.00 0.00 0.00 2.69
109 110 4.857037 AGTTTCGTGCTTCTTTGTTTCAAC 59.143 37.500 0.00 0.00 0.00 3.18
110 111 4.695217 TTCGTGCTTCTTTGTTTCAACT 57.305 36.364 0.00 0.00 0.00 3.16
111 112 5.804692 TTCGTGCTTCTTTGTTTCAACTA 57.195 34.783 0.00 0.00 0.00 2.24
112 113 5.804692 TCGTGCTTCTTTGTTTCAACTAA 57.195 34.783 0.00 0.00 0.00 2.24
113 114 6.371809 TCGTGCTTCTTTGTTTCAACTAAT 57.628 33.333 0.00 0.00 0.00 1.73
114 115 6.791303 TCGTGCTTCTTTGTTTCAACTAATT 58.209 32.000 0.00 0.00 0.00 1.40
115 116 6.690957 TCGTGCTTCTTTGTTTCAACTAATTG 59.309 34.615 0.00 0.00 37.14 2.32
116 117 6.472163 CGTGCTTCTTTGTTTCAACTAATTGT 59.528 34.615 0.00 0.00 37.11 2.71
117 118 7.009174 CGTGCTTCTTTGTTTCAACTAATTGTT 59.991 33.333 0.00 0.00 39.92 2.83
130 131 5.934935 ACTAATTGTTGTCGGTTAGGTTG 57.065 39.130 0.00 0.00 0.00 3.77
131 132 4.758165 ACTAATTGTTGTCGGTTAGGTTGG 59.242 41.667 0.00 0.00 0.00 3.77
132 133 1.310904 TTGTTGTCGGTTAGGTTGGC 58.689 50.000 0.00 0.00 0.00 4.52
133 134 0.470766 TGTTGTCGGTTAGGTTGGCT 59.529 50.000 0.00 0.00 0.00 4.75
134 135 1.693062 TGTTGTCGGTTAGGTTGGCTA 59.307 47.619 0.00 0.00 0.00 3.93
135 136 2.289195 TGTTGTCGGTTAGGTTGGCTAG 60.289 50.000 0.00 0.00 0.00 3.42
136 137 0.248289 TGTCGGTTAGGTTGGCTAGC 59.752 55.000 6.04 6.04 0.00 3.42
137 138 0.804933 GTCGGTTAGGTTGGCTAGCG 60.805 60.000 9.00 0.00 0.00 4.26
138 139 1.520787 CGGTTAGGTTGGCTAGCGG 60.521 63.158 9.00 0.00 0.00 5.52
139 140 1.153229 GGTTAGGTTGGCTAGCGGG 60.153 63.158 9.00 0.00 0.00 6.13
140 141 1.619807 GGTTAGGTTGGCTAGCGGGA 61.620 60.000 9.00 0.00 0.00 5.14
141 142 0.468648 GTTAGGTTGGCTAGCGGGAT 59.531 55.000 9.00 0.00 0.00 3.85
142 143 0.468226 TTAGGTTGGCTAGCGGGATG 59.532 55.000 9.00 0.00 0.00 3.51
143 144 1.407656 TAGGTTGGCTAGCGGGATGG 61.408 60.000 9.00 0.00 0.00 3.51
144 145 2.590092 GTTGGCTAGCGGGATGGT 59.410 61.111 9.00 0.00 0.00 3.55
145 146 1.077716 GTTGGCTAGCGGGATGGTT 60.078 57.895 9.00 0.00 0.00 3.67
146 147 0.679960 GTTGGCTAGCGGGATGGTTT 60.680 55.000 9.00 0.00 0.00 3.27
147 148 0.039035 TTGGCTAGCGGGATGGTTTT 59.961 50.000 9.00 0.00 0.00 2.43
148 149 0.039035 TGGCTAGCGGGATGGTTTTT 59.961 50.000 9.00 0.00 0.00 1.94
149 150 0.455815 GGCTAGCGGGATGGTTTTTG 59.544 55.000 9.00 0.00 0.00 2.44
150 151 1.459450 GCTAGCGGGATGGTTTTTGA 58.541 50.000 0.00 0.00 0.00 2.69
151 152 1.816224 GCTAGCGGGATGGTTTTTGAA 59.184 47.619 0.00 0.00 0.00 2.69
152 153 2.159379 GCTAGCGGGATGGTTTTTGAAG 60.159 50.000 0.00 0.00 0.00 3.02
153 154 1.995376 AGCGGGATGGTTTTTGAAGT 58.005 45.000 0.00 0.00 0.00 3.01
154 155 3.149005 AGCGGGATGGTTTTTGAAGTA 57.851 42.857 0.00 0.00 0.00 2.24
155 156 2.817844 AGCGGGATGGTTTTTGAAGTAC 59.182 45.455 0.00 0.00 0.00 2.73
156 157 2.094906 GCGGGATGGTTTTTGAAGTACC 60.095 50.000 0.00 0.00 0.00 3.34
157 158 3.150767 CGGGATGGTTTTTGAAGTACCA 58.849 45.455 3.48 3.48 45.32 3.25
158 159 3.190535 CGGGATGGTTTTTGAAGTACCAG 59.809 47.826 6.63 0.00 44.53 4.00
159 160 3.056821 GGGATGGTTTTTGAAGTACCAGC 60.057 47.826 7.30 7.30 44.53 4.85
160 161 4.846779 GATGGTTTTTGAAGTACCAGCA 57.153 40.909 10.02 0.00 45.26 4.41
161 162 4.546570 GATGGTTTTTGAAGTACCAGCAC 58.453 43.478 10.02 1.23 45.26 4.40
162 163 2.691011 TGGTTTTTGAAGTACCAGCACC 59.309 45.455 0.00 0.00 37.04 5.01
163 164 2.035449 GGTTTTTGAAGTACCAGCACCC 59.965 50.000 0.00 0.00 32.12 4.61
164 165 2.691011 GTTTTTGAAGTACCAGCACCCA 59.309 45.455 0.00 0.00 0.00 4.51
165 166 2.738587 TTTGAAGTACCAGCACCCAA 57.261 45.000 0.00 0.00 0.00 4.12
166 167 2.270352 TTGAAGTACCAGCACCCAAG 57.730 50.000 0.00 0.00 0.00 3.61
167 168 1.136828 TGAAGTACCAGCACCCAAGT 58.863 50.000 0.00 0.00 0.00 3.16
168 169 1.493022 TGAAGTACCAGCACCCAAGTT 59.507 47.619 0.00 0.00 0.00 2.66
169 170 2.152016 GAAGTACCAGCACCCAAGTTC 58.848 52.381 0.00 0.00 0.00 3.01
170 171 0.034896 AGTACCAGCACCCAAGTTCG 59.965 55.000 0.00 0.00 0.00 3.95
171 172 0.034337 GTACCAGCACCCAAGTTCGA 59.966 55.000 0.00 0.00 0.00 3.71
172 173 0.981183 TACCAGCACCCAAGTTCGAT 59.019 50.000 0.00 0.00 0.00 3.59
173 174 0.110486 ACCAGCACCCAAGTTCGATT 59.890 50.000 0.00 0.00 0.00 3.34
174 175 0.804989 CCAGCACCCAAGTTCGATTC 59.195 55.000 0.00 0.00 0.00 2.52
175 176 0.804989 CAGCACCCAAGTTCGATTCC 59.195 55.000 0.00 0.00 0.00 3.01
176 177 0.322546 AGCACCCAAGTTCGATTCCC 60.323 55.000 0.00 0.00 0.00 3.97
177 178 0.322546 GCACCCAAGTTCGATTCCCT 60.323 55.000 0.00 0.00 0.00 4.20
178 179 1.886655 GCACCCAAGTTCGATTCCCTT 60.887 52.381 0.00 0.00 0.00 3.95
179 180 1.812571 CACCCAAGTTCGATTCCCTTG 59.187 52.381 0.00 0.00 36.26 3.61
180 181 1.702957 ACCCAAGTTCGATTCCCTTGA 59.297 47.619 13.17 0.00 38.23 3.02
181 182 2.290323 ACCCAAGTTCGATTCCCTTGAG 60.290 50.000 13.17 5.77 38.23 3.02
182 183 2.290323 CCCAAGTTCGATTCCCTTGAGT 60.290 50.000 13.17 0.00 38.23 3.41
183 184 3.003480 CCAAGTTCGATTCCCTTGAGTC 58.997 50.000 13.17 0.00 38.23 3.36
184 185 3.307059 CCAAGTTCGATTCCCTTGAGTCT 60.307 47.826 13.17 0.00 38.23 3.24
185 186 3.878160 AGTTCGATTCCCTTGAGTCTC 57.122 47.619 0.00 0.00 0.00 3.36
186 187 3.165875 AGTTCGATTCCCTTGAGTCTCA 58.834 45.455 0.00 0.00 0.00 3.27
187 188 3.772025 AGTTCGATTCCCTTGAGTCTCAT 59.228 43.478 2.68 0.00 0.00 2.90
188 189 4.223923 AGTTCGATTCCCTTGAGTCTCATT 59.776 41.667 2.68 0.00 0.00 2.57
189 190 4.826274 TCGATTCCCTTGAGTCTCATTT 57.174 40.909 2.68 0.00 0.00 2.32
190 191 5.165961 TCGATTCCCTTGAGTCTCATTTT 57.834 39.130 2.68 0.00 0.00 1.82
191 192 5.560724 TCGATTCCCTTGAGTCTCATTTTT 58.439 37.500 2.68 0.00 0.00 1.94
227 228 9.908152 ATTTTTAAATCACCTCTTACGAAAAGG 57.092 29.630 0.00 0.00 36.21 3.11
228 229 8.680039 TTTTAAATCACCTCTTACGAAAAGGA 57.320 30.769 0.00 0.00 34.16 3.36
229 230 8.680039 TTTAAATCACCTCTTACGAAAAGGAA 57.320 30.769 0.00 0.00 34.16 3.36
230 231 8.680039 TTAAATCACCTCTTACGAAAAGGAAA 57.320 30.769 0.00 0.00 34.16 3.13
231 232 7.576861 AAATCACCTCTTACGAAAAGGAAAA 57.423 32.000 0.00 0.00 34.16 2.29
232 233 7.576861 AATCACCTCTTACGAAAAGGAAAAA 57.423 32.000 0.00 0.00 34.16 1.94
233 234 6.367686 TCACCTCTTACGAAAAGGAAAAAC 57.632 37.500 0.00 0.00 34.16 2.43
234 235 5.881443 TCACCTCTTACGAAAAGGAAAAACA 59.119 36.000 0.00 0.00 34.16 2.83
235 236 5.969435 CACCTCTTACGAAAAGGAAAAACAC 59.031 40.000 0.00 0.00 34.16 3.32
236 237 5.202640 CCTCTTACGAAAAGGAAAAACACG 58.797 41.667 0.00 0.00 31.44 4.49
237 238 4.590226 TCTTACGAAAAGGAAAAACACGC 58.410 39.130 0.00 0.00 0.00 5.34
238 239 4.333372 TCTTACGAAAAGGAAAAACACGCT 59.667 37.500 0.00 0.00 0.00 5.07
239 240 3.497297 ACGAAAAGGAAAAACACGCTT 57.503 38.095 0.00 0.00 0.00 4.68
240 241 3.431856 ACGAAAAGGAAAAACACGCTTC 58.568 40.909 0.00 0.00 0.00 3.86
241 242 2.462565 CGAAAAGGAAAAACACGCTTCG 59.537 45.455 0.00 0.00 0.00 3.79
242 243 1.835121 AAAGGAAAAACACGCTTCGC 58.165 45.000 0.00 0.00 0.00 4.70
243 244 0.030235 AAGGAAAAACACGCTTCGCC 59.970 50.000 0.00 0.00 0.00 5.54
244 245 0.818040 AGGAAAAACACGCTTCGCCT 60.818 50.000 0.00 0.00 0.00 5.52
245 246 0.660300 GGAAAAACACGCTTCGCCTG 60.660 55.000 0.00 0.00 0.00 4.85
246 247 0.660300 GAAAAACACGCTTCGCCTGG 60.660 55.000 0.00 0.00 0.00 4.45
247 248 1.381165 AAAAACACGCTTCGCCTGGT 61.381 50.000 0.00 0.00 0.00 4.00
248 249 2.058829 AAAACACGCTTCGCCTGGTG 62.059 55.000 0.00 0.00 36.50 4.17
249 250 4.988598 ACACGCTTCGCCTGGTGG 62.989 66.667 7.51 0.00 34.78 4.61
297 298 2.777536 AGACCTGCTGACAATCCCA 58.222 52.632 0.00 0.00 0.00 4.37
298 299 1.293062 AGACCTGCTGACAATCCCAT 58.707 50.000 0.00 0.00 0.00 4.00
299 300 1.211457 AGACCTGCTGACAATCCCATC 59.789 52.381 0.00 0.00 0.00 3.51
300 301 0.107508 ACCTGCTGACAATCCCATCG 60.108 55.000 0.00 0.00 0.00 3.84
301 302 0.178767 CCTGCTGACAATCCCATCGA 59.821 55.000 0.00 0.00 0.00 3.59
302 303 1.407299 CCTGCTGACAATCCCATCGAA 60.407 52.381 0.00 0.00 0.00 3.71
303 304 2.358957 CTGCTGACAATCCCATCGAAA 58.641 47.619 0.00 0.00 0.00 3.46
304 305 2.749076 CTGCTGACAATCCCATCGAAAA 59.251 45.455 0.00 0.00 0.00 2.29
305 306 2.487762 TGCTGACAATCCCATCGAAAAC 59.512 45.455 0.00 0.00 0.00 2.43
306 307 2.487762 GCTGACAATCCCATCGAAAACA 59.512 45.455 0.00 0.00 0.00 2.83
307 308 3.426695 GCTGACAATCCCATCGAAAACAG 60.427 47.826 0.00 0.00 0.00 3.16
308 309 3.081061 TGACAATCCCATCGAAAACAGG 58.919 45.455 0.00 0.00 0.00 4.00
309 310 1.818674 ACAATCCCATCGAAAACAGGC 59.181 47.619 0.00 0.00 0.00 4.85
310 311 2.094675 CAATCCCATCGAAAACAGGCT 58.905 47.619 0.00 0.00 0.00 4.58
311 312 3.278574 CAATCCCATCGAAAACAGGCTA 58.721 45.455 0.00 0.00 0.00 3.93
312 313 3.644966 ATCCCATCGAAAACAGGCTAA 57.355 42.857 0.00 0.00 0.00 3.09
313 314 3.644966 TCCCATCGAAAACAGGCTAAT 57.355 42.857 0.00 0.00 0.00 1.73
314 315 3.278574 TCCCATCGAAAACAGGCTAATG 58.721 45.455 0.00 0.00 0.00 1.90
315 316 3.016736 CCCATCGAAAACAGGCTAATGT 58.983 45.455 0.00 0.00 33.96 2.71
316 317 3.443681 CCCATCGAAAACAGGCTAATGTT 59.556 43.478 0.00 0.00 45.18 2.71
317 318 4.438744 CCCATCGAAAACAGGCTAATGTTC 60.439 45.833 0.00 0.00 42.49 3.18
318 319 4.155826 CCATCGAAAACAGGCTAATGTTCA 59.844 41.667 0.00 0.00 42.49 3.18
319 320 5.335583 CCATCGAAAACAGGCTAATGTTCAA 60.336 40.000 0.00 0.00 42.49 2.69
320 321 5.759506 TCGAAAACAGGCTAATGTTCAAA 57.240 34.783 0.00 0.00 42.49 2.69
321 322 6.137794 TCGAAAACAGGCTAATGTTCAAAA 57.862 33.333 0.00 0.00 42.49 2.44
322 323 6.744112 TCGAAAACAGGCTAATGTTCAAAAT 58.256 32.000 0.00 0.00 42.49 1.82
323 324 6.640499 TCGAAAACAGGCTAATGTTCAAAATG 59.360 34.615 0.00 0.00 42.49 2.32
324 325 6.128849 CGAAAACAGGCTAATGTTCAAAATGG 60.129 38.462 0.00 0.00 42.49 3.16
325 326 6.418057 AAACAGGCTAATGTTCAAAATGGA 57.582 33.333 0.00 0.00 42.49 3.41
326 327 6.418057 AACAGGCTAATGTTCAAAATGGAA 57.582 33.333 0.00 0.00 39.13 3.53
327 328 5.783111 ACAGGCTAATGTTCAAAATGGAAC 58.217 37.500 0.00 0.00 45.75 3.62
335 336 4.096732 GTTCAAAATGGAACGGGATCAG 57.903 45.455 0.00 0.00 37.96 2.90
336 337 3.712016 TCAAAATGGAACGGGATCAGA 57.288 42.857 0.00 0.00 0.00 3.27
337 338 4.027674 TCAAAATGGAACGGGATCAGAA 57.972 40.909 0.00 0.00 0.00 3.02
338 339 4.402829 TCAAAATGGAACGGGATCAGAAA 58.597 39.130 0.00 0.00 0.00 2.52
339 340 4.458989 TCAAAATGGAACGGGATCAGAAAG 59.541 41.667 0.00 0.00 0.00 2.62
340 341 3.721087 AATGGAACGGGATCAGAAAGT 57.279 42.857 0.00 0.00 0.00 2.66
341 342 3.721087 ATGGAACGGGATCAGAAAGTT 57.279 42.857 0.00 0.00 0.00 2.66
342 343 3.053831 TGGAACGGGATCAGAAAGTTC 57.946 47.619 0.00 2.64 40.09 3.01
343 344 2.000447 GGAACGGGATCAGAAAGTTCG 59.000 52.381 0.00 0.00 41.28 3.95
344 345 2.000447 GAACGGGATCAGAAAGTTCGG 59.000 52.381 0.00 0.00 33.11 4.30
345 346 0.974383 ACGGGATCAGAAAGTTCGGT 59.026 50.000 0.00 0.00 0.00 4.69
346 347 1.337823 ACGGGATCAGAAAGTTCGGTG 60.338 52.381 0.00 0.00 0.00 4.94
347 348 1.337823 CGGGATCAGAAAGTTCGGTGT 60.338 52.381 0.00 0.00 0.00 4.16
348 349 2.076863 GGGATCAGAAAGTTCGGTGTG 58.923 52.381 0.00 0.00 0.00 3.82
349 350 1.464997 GGATCAGAAAGTTCGGTGTGC 59.535 52.381 0.00 0.00 0.00 4.57
350 351 2.417719 GATCAGAAAGTTCGGTGTGCT 58.582 47.619 0.00 0.00 0.00 4.40
351 352 3.585862 GATCAGAAAGTTCGGTGTGCTA 58.414 45.455 0.00 0.00 0.00 3.49
352 353 3.462483 TCAGAAAGTTCGGTGTGCTAA 57.538 42.857 0.00 0.00 0.00 3.09
353 354 4.002906 TCAGAAAGTTCGGTGTGCTAAT 57.997 40.909 0.00 0.00 0.00 1.73
354 355 4.385825 TCAGAAAGTTCGGTGTGCTAATT 58.614 39.130 0.00 0.00 0.00 1.40
355 356 4.819630 TCAGAAAGTTCGGTGTGCTAATTT 59.180 37.500 0.00 0.00 0.00 1.82
356 357 5.298276 TCAGAAAGTTCGGTGTGCTAATTTT 59.702 36.000 0.00 0.00 0.00 1.82
357 358 6.483974 TCAGAAAGTTCGGTGTGCTAATTTTA 59.516 34.615 0.00 0.00 0.00 1.52
358 359 7.012515 TCAGAAAGTTCGGTGTGCTAATTTTAA 59.987 33.333 0.00 0.00 0.00 1.52
359 360 7.646130 CAGAAAGTTCGGTGTGCTAATTTTAAA 59.354 33.333 0.00 0.00 0.00 1.52
360 361 7.860872 AGAAAGTTCGGTGTGCTAATTTTAAAG 59.139 33.333 0.00 0.00 0.00 1.85
361 362 6.870971 AGTTCGGTGTGCTAATTTTAAAGA 57.129 33.333 0.00 0.00 0.00 2.52
362 363 7.448748 AGTTCGGTGTGCTAATTTTAAAGAT 57.551 32.000 0.00 0.00 0.00 2.40
363 364 7.882179 AGTTCGGTGTGCTAATTTTAAAGATT 58.118 30.769 0.00 0.00 0.00 2.40
364 365 9.005777 AGTTCGGTGTGCTAATTTTAAAGATTA 57.994 29.630 0.00 0.00 0.00 1.75
365 366 9.274065 GTTCGGTGTGCTAATTTTAAAGATTAG 57.726 33.333 17.13 17.13 39.16 1.73
366 367 8.780846 TCGGTGTGCTAATTTTAAAGATTAGA 57.219 30.769 21.55 11.68 38.69 2.10
367 368 9.221933 TCGGTGTGCTAATTTTAAAGATTAGAA 57.778 29.630 21.55 14.67 38.69 2.10
368 369 9.490663 CGGTGTGCTAATTTTAAAGATTAGAAG 57.509 33.333 21.55 8.95 38.69 2.85
379 380 9.825109 TTTTAAAGATTAGAAGTTTGGGGTTTG 57.175 29.630 0.00 0.00 0.00 2.93
380 381 8.770010 TTAAAGATTAGAAGTTTGGGGTTTGA 57.230 30.769 0.00 0.00 0.00 2.69
381 382 7.855784 AAAGATTAGAAGTTTGGGGTTTGAT 57.144 32.000 0.00 0.00 0.00 2.57
382 383 7.855784 AAGATTAGAAGTTTGGGGTTTGATT 57.144 32.000 0.00 0.00 0.00 2.57
383 384 7.855784 AGATTAGAAGTTTGGGGTTTGATTT 57.144 32.000 0.00 0.00 0.00 2.17
384 385 8.950007 AGATTAGAAGTTTGGGGTTTGATTTA 57.050 30.769 0.00 0.00 0.00 1.40
385 386 9.025041 AGATTAGAAGTTTGGGGTTTGATTTAG 57.975 33.333 0.00 0.00 0.00 1.85
386 387 5.468540 AGAAGTTTGGGGTTTGATTTAGC 57.531 39.130 0.00 0.00 0.00 3.09
387 388 5.147767 AGAAGTTTGGGGTTTGATTTAGCT 58.852 37.500 0.00 0.00 0.00 3.32
388 389 5.602561 AGAAGTTTGGGGTTTGATTTAGCTT 59.397 36.000 0.00 0.00 0.00 3.74
389 390 5.887214 AGTTTGGGGTTTGATTTAGCTTT 57.113 34.783 0.00 0.00 0.00 3.51
390 391 5.853936 AGTTTGGGGTTTGATTTAGCTTTC 58.146 37.500 0.00 0.00 0.00 2.62
391 392 4.513198 TTGGGGTTTGATTTAGCTTTCG 57.487 40.909 0.00 0.00 0.00 3.46
392 393 3.757270 TGGGGTTTGATTTAGCTTTCGA 58.243 40.909 0.00 0.00 0.00 3.71
393 394 3.504520 TGGGGTTTGATTTAGCTTTCGAC 59.495 43.478 0.00 0.00 0.00 4.20
394 395 3.756963 GGGGTTTGATTTAGCTTTCGACT 59.243 43.478 0.00 0.00 0.00 4.18
395 396 4.939439 GGGGTTTGATTTAGCTTTCGACTA 59.061 41.667 0.00 0.00 0.00 2.59
396 397 5.163784 GGGGTTTGATTTAGCTTTCGACTAC 60.164 44.000 0.00 0.00 0.00 2.73
397 398 5.410439 GGGTTTGATTTAGCTTTCGACTACA 59.590 40.000 0.00 0.00 0.00 2.74
398 399 6.072893 GGGTTTGATTTAGCTTTCGACTACAA 60.073 38.462 0.00 0.00 0.00 2.41
399 400 7.015877 GGTTTGATTTAGCTTTCGACTACAAG 58.984 38.462 0.00 0.00 0.00 3.16
400 401 7.307811 GGTTTGATTTAGCTTTCGACTACAAGT 60.308 37.037 0.00 0.00 0.00 3.16
401 402 7.724305 TTGATTTAGCTTTCGACTACAAGTT 57.276 32.000 0.00 0.00 0.00 2.66
402 403 7.347508 TGATTTAGCTTTCGACTACAAGTTC 57.652 36.000 0.00 0.00 0.00 3.01
403 404 6.926826 TGATTTAGCTTTCGACTACAAGTTCA 59.073 34.615 0.00 0.00 0.00 3.18
404 405 7.439955 TGATTTAGCTTTCGACTACAAGTTCAA 59.560 33.333 0.00 0.00 0.00 2.69
405 406 6.764877 TTAGCTTTCGACTACAAGTTCAAG 57.235 37.500 0.00 0.00 0.00 3.02
406 407 4.945246 AGCTTTCGACTACAAGTTCAAGA 58.055 39.130 0.00 0.00 0.00 3.02
407 408 5.542779 AGCTTTCGACTACAAGTTCAAGAT 58.457 37.500 0.00 0.00 0.00 2.40
408 409 5.992217 AGCTTTCGACTACAAGTTCAAGATT 59.008 36.000 0.00 0.00 0.00 2.40
409 410 7.152645 AGCTTTCGACTACAAGTTCAAGATTA 58.847 34.615 0.00 0.00 0.00 1.75
410 411 7.819900 AGCTTTCGACTACAAGTTCAAGATTAT 59.180 33.333 0.00 0.00 0.00 1.28
411 412 8.443937 GCTTTCGACTACAAGTTCAAGATTATT 58.556 33.333 0.00 0.00 0.00 1.40
437 438 9.495572 TTTTAGACTTTTTCCTTTGCAAAAAGA 57.504 25.926 21.54 15.02 46.87 2.52
438 439 6.968131 AGACTTTTTCCTTTGCAAAAAGAC 57.032 33.333 21.54 16.75 46.87 3.01
439 440 6.463360 AGACTTTTTCCTTTGCAAAAAGACA 58.537 32.000 21.54 9.68 46.87 3.41
440 441 6.368791 AGACTTTTTCCTTTGCAAAAAGACAC 59.631 34.615 21.54 13.89 46.87 3.67
441 442 5.120053 ACTTTTTCCTTTGCAAAAAGACACG 59.880 36.000 21.54 6.49 46.87 4.49
442 443 2.861462 TCCTTTGCAAAAAGACACGG 57.139 45.000 13.84 9.04 31.58 4.94
443 444 1.202359 TCCTTTGCAAAAAGACACGGC 60.202 47.619 13.84 0.00 31.58 5.68
444 445 1.470632 CCTTTGCAAAAAGACACGGCA 60.471 47.619 13.84 0.00 31.58 5.69
445 446 1.854126 CTTTGCAAAAAGACACGGCAG 59.146 47.619 13.84 0.00 35.68 4.85
446 447 0.102120 TTGCAAAAAGACACGGCAGG 59.898 50.000 0.00 0.00 35.68 4.85
447 448 1.661509 GCAAAAAGACACGGCAGGC 60.662 57.895 0.00 0.00 0.00 4.85
448 449 1.732917 CAAAAAGACACGGCAGGCA 59.267 52.632 0.00 0.00 0.00 4.75
449 450 0.318107 CAAAAAGACACGGCAGGCAG 60.318 55.000 0.00 0.00 0.00 4.85
450 451 1.455383 AAAAAGACACGGCAGGCAGG 61.455 55.000 0.00 0.00 0.00 4.85
451 452 2.624674 AAAAGACACGGCAGGCAGGT 62.625 55.000 0.00 0.00 0.00 4.00
452 453 3.537206 AAGACACGGCAGGCAGGTC 62.537 63.158 6.85 6.85 0.00 3.85
459 460 4.742201 GCAGGCAGGTCGCGAAGA 62.742 66.667 12.06 0.00 43.84 2.87
468 469 2.899182 GTCGCGAAGACGAAAATGC 58.101 52.632 12.06 0.00 44.93 3.56
469 470 0.162933 GTCGCGAAGACGAAAATGCA 59.837 50.000 12.06 0.00 44.93 3.96
470 471 1.075542 TCGCGAAGACGAAAATGCAT 58.924 45.000 6.20 0.00 39.54 3.96
471 472 1.060553 TCGCGAAGACGAAAATGCATC 59.939 47.619 6.20 0.00 39.54 3.91
472 473 1.815132 GCGAAGACGAAAATGCATCC 58.185 50.000 0.00 0.00 42.66 3.51
473 474 1.852077 GCGAAGACGAAAATGCATCCG 60.852 52.381 0.00 7.11 42.66 4.18
474 475 1.815132 GAAGACGAAAATGCATCCGC 58.185 50.000 0.00 1.68 39.24 5.54
475 476 0.096976 AAGACGAAAATGCATCCGCG 59.903 50.000 0.00 0.00 42.97 6.46
476 477 1.934476 GACGAAAATGCATCCGCGC 60.934 57.895 0.00 0.00 42.97 6.86
477 478 3.012888 CGAAAATGCATCCGCGCG 61.013 61.111 25.67 25.67 42.97 6.86
478 479 2.100216 GAAAATGCATCCGCGCGT 59.900 55.556 29.95 8.36 42.97 6.01
479 480 1.514014 GAAAATGCATCCGCGCGTT 60.514 52.632 29.95 13.72 42.89 4.84
480 481 1.732474 GAAAATGCATCCGCGCGTTG 61.732 55.000 29.95 25.08 40.20 4.10
481 482 2.193865 AAAATGCATCCGCGCGTTGA 62.194 50.000 29.95 20.20 40.20 3.18
482 483 2.193865 AAATGCATCCGCGCGTTGAA 62.194 50.000 29.95 20.51 40.20 2.69
483 484 2.849142 AATGCATCCGCGCGTTGAAC 62.849 55.000 29.95 15.77 39.62 3.18
493 494 2.733218 CGTTGAACGCTCGGCAGA 60.733 61.111 4.26 0.00 33.65 4.26
494 495 2.853914 GTTGAACGCTCGGCAGAC 59.146 61.111 0.00 0.00 0.00 3.51
495 496 2.357034 TTGAACGCTCGGCAGACC 60.357 61.111 0.00 0.00 0.00 3.85
496 497 3.158537 TTGAACGCTCGGCAGACCA 62.159 57.895 0.00 0.00 34.57 4.02
497 498 2.357034 GAACGCTCGGCAGACCAA 60.357 61.111 0.00 0.00 34.57 3.67
498 499 1.959226 GAACGCTCGGCAGACCAAA 60.959 57.895 0.00 0.00 34.57 3.28
499 500 2.171489 GAACGCTCGGCAGACCAAAC 62.171 60.000 0.00 0.00 34.57 2.93
500 501 3.777925 CGCTCGGCAGACCAAACG 61.778 66.667 0.00 0.00 34.57 3.60
501 502 2.357034 GCTCGGCAGACCAAACGA 60.357 61.111 0.00 0.00 34.57 3.85
502 503 1.959226 GCTCGGCAGACCAAACGAA 60.959 57.895 0.00 0.00 34.70 3.85
503 504 1.298859 GCTCGGCAGACCAAACGAAT 61.299 55.000 0.00 0.00 34.70 3.34
504 505 0.443869 CTCGGCAGACCAAACGAATG 59.556 55.000 0.00 0.00 34.70 2.67
505 506 0.034198 TCGGCAGACCAAACGAATGA 59.966 50.000 0.00 0.00 34.57 2.57
506 507 0.165944 CGGCAGACCAAACGAATGAC 59.834 55.000 0.00 0.00 34.57 3.06
507 508 1.234821 GGCAGACCAAACGAATGACA 58.765 50.000 0.00 0.00 35.26 3.58
508 509 1.606668 GGCAGACCAAACGAATGACAA 59.393 47.619 0.00 0.00 35.26 3.18
509 510 2.034053 GGCAGACCAAACGAATGACAAA 59.966 45.455 0.00 0.00 35.26 2.83
510 511 3.042887 GCAGACCAAACGAATGACAAAC 58.957 45.455 0.00 0.00 0.00 2.93
511 512 3.488384 GCAGACCAAACGAATGACAAACA 60.488 43.478 0.00 0.00 0.00 2.83
512 513 4.792704 GCAGACCAAACGAATGACAAACAT 60.793 41.667 0.00 0.00 41.45 2.71
513 514 4.676471 CAGACCAAACGAATGACAAACATG 59.324 41.667 0.00 0.00 39.39 3.21
514 515 3.380142 ACCAAACGAATGACAAACATGC 58.620 40.909 0.00 0.00 39.39 4.06
515 516 3.181482 ACCAAACGAATGACAAACATGCA 60.181 39.130 0.00 0.00 39.39 3.96
516 517 3.426191 CCAAACGAATGACAAACATGCAG 59.574 43.478 0.00 0.00 39.39 4.41
517 518 2.336554 ACGAATGACAAACATGCAGC 57.663 45.000 0.00 0.00 39.39 5.25
518 519 1.068333 ACGAATGACAAACATGCAGCC 60.068 47.619 0.00 0.00 39.39 4.85
519 520 1.068402 CGAATGACAAACATGCAGCCA 60.068 47.619 0.00 0.00 39.39 4.75
520 521 2.607526 CGAATGACAAACATGCAGCCAA 60.608 45.455 0.00 0.00 39.39 4.52
521 522 2.443887 ATGACAAACATGCAGCCAAC 57.556 45.000 0.00 0.00 37.87 3.77
522 523 0.388659 TGACAAACATGCAGCCAACC 59.611 50.000 0.00 0.00 0.00 3.77
523 524 0.319813 GACAAACATGCAGCCAACCC 60.320 55.000 0.00 0.00 0.00 4.11
524 525 1.047596 ACAAACATGCAGCCAACCCA 61.048 50.000 0.00 0.00 0.00 4.51
525 526 0.106335 CAAACATGCAGCCAACCCAA 59.894 50.000 0.00 0.00 0.00 4.12
526 527 0.835941 AAACATGCAGCCAACCCAAA 59.164 45.000 0.00 0.00 0.00 3.28
527 528 1.058284 AACATGCAGCCAACCCAAAT 58.942 45.000 0.00 0.00 0.00 2.32
528 529 0.322322 ACATGCAGCCAACCCAAATG 59.678 50.000 0.00 0.00 0.00 2.32
529 530 0.609151 CATGCAGCCAACCCAAATGA 59.391 50.000 0.00 0.00 0.00 2.57
530 531 1.002201 CATGCAGCCAACCCAAATGAA 59.998 47.619 0.00 0.00 0.00 2.57
531 532 1.350071 TGCAGCCAACCCAAATGAAT 58.650 45.000 0.00 0.00 0.00 2.57
532 533 2.533916 TGCAGCCAACCCAAATGAATA 58.466 42.857 0.00 0.00 0.00 1.75
533 534 2.902486 TGCAGCCAACCCAAATGAATAA 59.098 40.909 0.00 0.00 0.00 1.40
534 535 3.326006 TGCAGCCAACCCAAATGAATAAA 59.674 39.130 0.00 0.00 0.00 1.40
535 536 4.202398 TGCAGCCAACCCAAATGAATAAAA 60.202 37.500 0.00 0.00 0.00 1.52
536 537 4.759183 GCAGCCAACCCAAATGAATAAAAA 59.241 37.500 0.00 0.00 0.00 1.94
537 538 5.106594 GCAGCCAACCCAAATGAATAAAAAG 60.107 40.000 0.00 0.00 0.00 2.27
538 539 5.997129 CAGCCAACCCAAATGAATAAAAAGT 59.003 36.000 0.00 0.00 0.00 2.66
539 540 5.997129 AGCCAACCCAAATGAATAAAAAGTG 59.003 36.000 0.00 0.00 0.00 3.16
540 541 5.994668 GCCAACCCAAATGAATAAAAAGTGA 59.005 36.000 0.00 0.00 0.00 3.41
541 542 6.484977 GCCAACCCAAATGAATAAAAAGTGAA 59.515 34.615 0.00 0.00 0.00 3.18
542 543 7.519809 GCCAACCCAAATGAATAAAAAGTGAAC 60.520 37.037 0.00 0.00 0.00 3.18
543 544 7.497249 CCAACCCAAATGAATAAAAAGTGAACA 59.503 33.333 0.00 0.00 0.00 3.18
557 558 2.425312 AGTGAACAAAATGTGCGTTGGA 59.575 40.909 0.00 0.00 0.00 3.53
562 563 1.068610 CAAAATGTGCGTTGGATCGGT 60.069 47.619 0.00 0.00 0.00 4.69
563 564 2.102070 AAATGTGCGTTGGATCGGTA 57.898 45.000 0.00 0.00 0.00 4.02
614 615 0.452987 CAGCCCAATTCATGACCACG 59.547 55.000 0.00 0.00 0.00 4.94
713 714 2.035783 GACCCAAGACCTTGCCCC 59.964 66.667 4.31 0.00 39.16 5.80
714 715 2.780924 ACCCAAGACCTTGCCCCA 60.781 61.111 4.31 0.00 39.16 4.96
732 733 1.203001 CCACAACCATACCCACCAACT 60.203 52.381 0.00 0.00 0.00 3.16
773 774 2.203640 ACCCACAGGTCAGCGAGA 60.204 61.111 0.00 0.00 46.45 4.04
774 775 1.610673 ACCCACAGGTCAGCGAGAT 60.611 57.895 0.00 0.00 46.45 2.75
786 787 2.423892 TCAGCGAGATGGTCTAGTTCAC 59.576 50.000 0.00 0.00 0.00 3.18
787 788 2.164422 CAGCGAGATGGTCTAGTTCACA 59.836 50.000 0.00 0.00 0.00 3.58
794 795 1.000607 TGGTCTAGTTCACACTGACGC 60.001 52.381 0.00 0.00 34.44 5.19
795 796 1.328439 GTCTAGTTCACACTGACGCG 58.672 55.000 3.53 3.53 34.06 6.01
796 797 1.069432 GTCTAGTTCACACTGACGCGA 60.069 52.381 15.93 0.00 34.06 5.87
961 964 1.473844 CCCCCAAAATTCCCCACCT 59.526 57.895 0.00 0.00 0.00 4.00
962 965 0.178876 CCCCCAAAATTCCCCACCTT 60.179 55.000 0.00 0.00 0.00 3.50
1332 1556 3.708220 CTCCCTCGCTCGCTTCACC 62.708 68.421 0.00 0.00 0.00 4.02
1698 1922 2.125512 GAGTTCGTGCCCAGCGAT 60.126 61.111 0.00 0.00 38.21 4.58
1761 1985 3.307691 GGAATGTCAGAGATGGTGTGGAA 60.308 47.826 0.00 0.00 0.00 3.53
1832 2056 2.672996 CTGGCTTGTTGGGGACGG 60.673 66.667 0.00 0.00 0.00 4.79
1984 2208 3.063997 GGTGATGTATTTGAACAGGAGCG 59.936 47.826 0.00 0.00 31.70 5.03
1998 2222 1.166531 GGAGCGGTGTCTGCAAACTT 61.167 55.000 0.00 0.00 33.85 2.66
2268 2492 2.276282 GCGAAATGTGAATTGCGTTAGC 59.724 45.455 1.15 0.00 45.41 3.09
2272 2496 5.478233 AAATGTGAATTGCGTTAGCGATA 57.522 34.783 2.07 0.00 46.35 2.92
2566 2790 7.039784 AGGTCTGAATTTTGCTAAATGTGCTAA 60.040 33.333 6.89 0.00 34.27 3.09
2567 2791 7.761249 GGTCTGAATTTTGCTAAATGTGCTAAT 59.239 33.333 6.89 0.00 34.27 1.73
2568 2792 8.801913 GTCTGAATTTTGCTAAATGTGCTAATC 58.198 33.333 6.89 0.48 34.27 1.75
2569 2793 8.522003 TCTGAATTTTGCTAAATGTGCTAATCA 58.478 29.630 6.89 4.72 34.27 2.57
2570 2794 8.692110 TGAATTTTGCTAAATGTGCTAATCAG 57.308 30.769 6.89 0.00 34.27 2.90
2571 2795 8.306038 TGAATTTTGCTAAATGTGCTAATCAGT 58.694 29.630 6.89 0.00 34.27 3.41
2636 2860 8.409358 AGCCTTTCAGTACTTGATATTTGTTT 57.591 30.769 0.00 0.00 35.27 2.83
2702 2926 3.259876 GGTATTGGAAGTTTTGGGTTCCC 59.740 47.826 0.12 0.12 41.51 3.97
2764 2988 9.762933 GCTTATCATTCTAGAGTTTCTGATTCT 57.237 33.333 0.00 0.00 0.00 2.40
2870 3094 4.525912 ATCATTGACTGTTTCCTTTGGC 57.474 40.909 0.00 0.00 0.00 4.52
2906 3131 4.864704 TTTTGGGATTTTAGTGCACTCC 57.135 40.909 25.56 17.97 0.00 3.85
3057 3283 2.107204 AGCACTGATGGGTCTTTCTTGT 59.893 45.455 0.00 0.00 0.00 3.16
3072 3298 5.518847 TCTTTCTTGTATATGGCGAAGAACG 59.481 40.000 0.00 0.00 45.66 3.95
3301 3527 3.491342 TGGCAAACAACATTACTGGCTA 58.509 40.909 0.00 0.00 33.97 3.93
3333 3582 9.866655 TTCTATGGTTGATTATTAATTCTGCCT 57.133 29.630 0.00 0.00 0.00 4.75
3334 3583 9.507329 TCTATGGTTGATTATTAATTCTGCCTC 57.493 33.333 0.00 0.00 0.00 4.70
3335 3584 9.512588 CTATGGTTGATTATTAATTCTGCCTCT 57.487 33.333 0.00 0.00 0.00 3.69
3336 3585 8.773033 ATGGTTGATTATTAATTCTGCCTCTT 57.227 30.769 0.00 0.00 0.00 2.85
3337 3586 8.593945 TGGTTGATTATTAATTCTGCCTCTTT 57.406 30.769 0.00 0.00 0.00 2.52
3338 3587 9.034800 TGGTTGATTATTAATTCTGCCTCTTTT 57.965 29.630 0.00 0.00 0.00 2.27
3339 3588 9.875691 GGTTGATTATTAATTCTGCCTCTTTTT 57.124 29.630 0.00 0.00 0.00 1.94
3557 3806 1.066143 TCCAGGCGAAGAATCTTCCAC 60.066 52.381 16.49 9.87 0.00 4.02
3644 3893 4.627035 GGAAAAACAAACTGGCTGATATGC 59.373 41.667 0.00 0.00 0.00 3.14
3764 4013 4.441495 CCCTTCGACTTGTACATGCTGATA 60.441 45.833 8.58 0.00 0.00 2.15
3800 4049 0.032813 AGGCCCAACCATCATCAAGG 60.033 55.000 0.00 0.00 43.14 3.61
3816 4065 5.704978 TCATCAAGGTCGATCAAAATGAACA 59.295 36.000 0.00 0.00 0.00 3.18
4026 4275 8.798859 ATAGCAAAGAATATGTTGTCTTGAGT 57.201 30.769 0.00 0.00 34.33 3.41
4047 4296 2.976903 GCATCTCATCCTGCCGCC 60.977 66.667 0.00 0.00 32.15 6.13
4126 4375 9.673454 TTACATACGCTGTACAGTAAATCATAG 57.327 33.333 23.44 8.11 40.06 2.23
4130 4379 5.221263 ACGCTGTACAGTAAATCATAGGAGG 60.221 44.000 23.44 0.00 0.00 4.30
4192 4441 9.796062 CTTGTTTTGTTATTTTGTGCATATCAC 57.204 29.630 0.00 0.00 45.82 3.06
4214 4463 2.258109 GAGGTCCTACTGGAAGGTGTT 58.742 52.381 0.00 0.00 45.18 3.32
4215 4464 2.638363 GAGGTCCTACTGGAAGGTGTTT 59.362 50.000 0.00 0.00 45.18 2.83
4220 4469 3.139077 CCTACTGGAAGGTGTTTGTGAC 58.861 50.000 0.00 0.00 39.30 3.67
4234 4483 4.704540 TGTTTGTGACTGGTTTCTTCATGT 59.295 37.500 0.00 0.00 0.00 3.21
4280 4529 3.057315 CAGACATAACTTTGGTGCAAGGG 60.057 47.826 0.00 0.00 0.00 3.95
4294 4543 4.222810 GGTGCAAGGGAAGTTTTGGATTAT 59.777 41.667 0.00 0.00 0.00 1.28
4395 4649 7.426929 TGTTTTTCTAGCAGAGAAGTTGATC 57.573 36.000 1.86 0.00 45.05 2.92
4399 4653 7.710676 TTTCTAGCAGAGAAGTTGATCTACT 57.289 36.000 3.80 3.80 45.05 2.57
4401 4655 7.094508 TCTAGCAGAGAAGTTGATCTACTTG 57.905 40.000 24.26 13.29 38.43 3.16
4402 4656 5.991933 AGCAGAGAAGTTGATCTACTTGA 57.008 39.130 24.26 0.00 38.43 3.02
4403 4657 5.964758 AGCAGAGAAGTTGATCTACTTGAG 58.035 41.667 24.26 12.95 38.43 3.02
4404 4658 5.105392 AGCAGAGAAGTTGATCTACTTGAGG 60.105 44.000 24.26 12.97 38.43 3.86
4405 4659 5.108517 CAGAGAAGTTGATCTACTTGAGGC 58.891 45.833 24.26 11.63 38.43 4.70
4406 4660 4.161377 AGAGAAGTTGATCTACTTGAGGCC 59.839 45.833 24.26 11.30 38.43 5.19
4412 4666 2.968574 TGATCTACTTGAGGCCCATCTC 59.031 50.000 0.00 0.00 0.00 2.75
4447 4701 3.068590 AGTGGCAATGTCCTCTGTTTTTG 59.931 43.478 0.00 0.00 0.00 2.44
4466 4723 6.916360 TTTTGTTTCCTGATAAGGATGCTT 57.084 33.333 0.00 4.41 37.87 3.91
4500 4757 1.149174 CTGGTGTGGGTGCTCTGTT 59.851 57.895 0.00 0.00 0.00 3.16
4536 4793 0.318955 AATGTTTCACGCTTGCTGGC 60.319 50.000 0.00 0.00 0.00 4.85
4560 4817 3.937778 AGACTGACTACCCTAGGAGTC 57.062 52.381 19.30 19.30 42.08 3.36
4563 4820 4.292836 AGACTGACTACCCTAGGAGTCTTT 59.707 45.833 23.99 14.57 42.40 2.52
4608 4865 1.801178 CTTCCTTTCTCGTGTCAAGCC 59.199 52.381 0.00 0.00 0.00 4.35
4696 4955 8.848474 TTGAAACCACTTAAAATTTTCAACCA 57.152 26.923 6.72 0.00 39.85 3.67
4725 4984 9.458374 AGGTATTCTCATTTTGTTTTTAACGTG 57.542 29.630 0.00 0.00 0.00 4.49
4727 4986 6.576551 TTCTCATTTTGTTTTTAACGTGGC 57.423 33.333 0.00 0.00 0.00 5.01
4736 4995 5.282510 TGTTTTTAACGTGGCGAATGATTT 58.717 33.333 0.00 0.00 0.00 2.17
4821 5080 4.803098 ACTGCTAGTAGTTAACACCTGG 57.197 45.455 7.78 6.01 0.00 4.45
4862 5122 3.181530 CGTAAAAGAACACTCATCCTGCG 60.182 47.826 0.00 0.00 0.00 5.18
4888 5148 2.035961 CTGTAGCCGTATGTGCATAGGT 59.964 50.000 9.94 1.44 0.00 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 9.691362 CTTTTTAATTACATACCACAACAAGCT 57.309 29.630 0.00 0.00 0.00 3.74
62 63 9.471084 ACTTTTTAATTACATACCACAACAAGC 57.529 29.630 0.00 0.00 0.00 4.01
68 69 9.666626 CACGAAACTTTTTAATTACATACCACA 57.333 29.630 0.00 0.00 0.00 4.17
69 70 8.632551 GCACGAAACTTTTTAATTACATACCAC 58.367 33.333 0.00 0.00 0.00 4.16
70 71 8.569641 AGCACGAAACTTTTTAATTACATACCA 58.430 29.630 0.00 0.00 0.00 3.25
71 72 8.959734 AGCACGAAACTTTTTAATTACATACC 57.040 30.769 0.00 0.00 0.00 2.73
74 75 9.744468 AAGAAGCACGAAACTTTTTAATTACAT 57.256 25.926 0.00 0.00 0.00 2.29
75 76 9.575783 AAAGAAGCACGAAACTTTTTAATTACA 57.424 25.926 0.00 0.00 29.96 2.41
76 77 9.829637 CAAAGAAGCACGAAACTTTTTAATTAC 57.170 29.630 0.00 0.00 31.52 1.89
77 78 9.575783 ACAAAGAAGCACGAAACTTTTTAATTA 57.424 25.926 0.00 0.00 31.52 1.40
78 79 8.474006 ACAAAGAAGCACGAAACTTTTTAATT 57.526 26.923 0.00 0.00 31.52 1.40
79 80 8.474006 AACAAAGAAGCACGAAACTTTTTAAT 57.526 26.923 0.00 0.00 31.52 1.40
80 81 7.876896 AACAAAGAAGCACGAAACTTTTTAA 57.123 28.000 0.00 0.00 31.52 1.52
81 82 7.595502 TGAAACAAAGAAGCACGAAACTTTTTA 59.404 29.630 0.00 0.00 31.52 1.52
82 83 6.422400 TGAAACAAAGAAGCACGAAACTTTTT 59.578 30.769 0.00 0.00 31.52 1.94
83 84 5.923684 TGAAACAAAGAAGCACGAAACTTTT 59.076 32.000 0.00 0.00 31.52 2.27
84 85 5.465935 TGAAACAAAGAAGCACGAAACTTT 58.534 33.333 0.00 0.00 33.69 2.66
85 86 5.054390 TGAAACAAAGAAGCACGAAACTT 57.946 34.783 0.00 0.00 0.00 2.66
86 87 4.695217 TGAAACAAAGAAGCACGAAACT 57.305 36.364 0.00 0.00 0.00 2.66
87 88 4.857037 AGTTGAAACAAAGAAGCACGAAAC 59.143 37.500 0.00 0.00 0.00 2.78
88 89 5.054390 AGTTGAAACAAAGAAGCACGAAA 57.946 34.783 0.00 0.00 0.00 3.46
89 90 4.695217 AGTTGAAACAAAGAAGCACGAA 57.305 36.364 0.00 0.00 0.00 3.85
90 91 5.804692 TTAGTTGAAACAAAGAAGCACGA 57.195 34.783 0.00 0.00 0.00 4.35
91 92 6.472163 ACAATTAGTTGAAACAAAGAAGCACG 59.528 34.615 4.81 0.00 38.71 5.34
92 93 7.755582 ACAATTAGTTGAAACAAAGAAGCAC 57.244 32.000 4.81 0.00 38.71 4.40
107 108 5.239963 CCAACCTAACCGACAACAATTAGTT 59.760 40.000 0.00 0.00 42.42 2.24
108 109 4.758165 CCAACCTAACCGACAACAATTAGT 59.242 41.667 0.00 0.00 0.00 2.24
109 110 4.379082 GCCAACCTAACCGACAACAATTAG 60.379 45.833 0.00 0.00 0.00 1.73
110 111 3.502979 GCCAACCTAACCGACAACAATTA 59.497 43.478 0.00 0.00 0.00 1.40
111 112 2.295070 GCCAACCTAACCGACAACAATT 59.705 45.455 0.00 0.00 0.00 2.32
112 113 1.883926 GCCAACCTAACCGACAACAAT 59.116 47.619 0.00 0.00 0.00 2.71
113 114 1.134037 AGCCAACCTAACCGACAACAA 60.134 47.619 0.00 0.00 0.00 2.83
114 115 0.470766 AGCCAACCTAACCGACAACA 59.529 50.000 0.00 0.00 0.00 3.33
115 116 2.344025 CTAGCCAACCTAACCGACAAC 58.656 52.381 0.00 0.00 0.00 3.32
116 117 1.338389 GCTAGCCAACCTAACCGACAA 60.338 52.381 2.29 0.00 0.00 3.18
117 118 0.248289 GCTAGCCAACCTAACCGACA 59.752 55.000 2.29 0.00 0.00 4.35
118 119 0.804933 CGCTAGCCAACCTAACCGAC 60.805 60.000 9.66 0.00 0.00 4.79
119 120 1.514087 CGCTAGCCAACCTAACCGA 59.486 57.895 9.66 0.00 0.00 4.69
120 121 1.520787 CCGCTAGCCAACCTAACCG 60.521 63.158 9.66 0.00 0.00 4.44
121 122 1.153229 CCCGCTAGCCAACCTAACC 60.153 63.158 9.66 0.00 0.00 2.85
122 123 0.468648 ATCCCGCTAGCCAACCTAAC 59.531 55.000 9.66 0.00 0.00 2.34
123 124 0.468226 CATCCCGCTAGCCAACCTAA 59.532 55.000 9.66 0.00 0.00 2.69
124 125 1.407656 CCATCCCGCTAGCCAACCTA 61.408 60.000 9.66 0.00 0.00 3.08
125 126 2.746375 CCATCCCGCTAGCCAACCT 61.746 63.158 9.66 0.00 0.00 3.50
126 127 2.203209 CCATCCCGCTAGCCAACC 60.203 66.667 9.66 0.00 0.00 3.77
127 128 0.679960 AAACCATCCCGCTAGCCAAC 60.680 55.000 9.66 0.00 0.00 3.77
128 129 0.039035 AAAACCATCCCGCTAGCCAA 59.961 50.000 9.66 0.00 0.00 4.52
129 130 0.039035 AAAAACCATCCCGCTAGCCA 59.961 50.000 9.66 0.00 0.00 4.75
130 131 0.455815 CAAAAACCATCCCGCTAGCC 59.544 55.000 9.66 0.00 0.00 3.93
131 132 1.459450 TCAAAAACCATCCCGCTAGC 58.541 50.000 4.06 4.06 0.00 3.42
132 133 3.081804 ACTTCAAAAACCATCCCGCTAG 58.918 45.455 0.00 0.00 0.00 3.42
133 134 3.149005 ACTTCAAAAACCATCCCGCTA 57.851 42.857 0.00 0.00 0.00 4.26
134 135 1.995376 ACTTCAAAAACCATCCCGCT 58.005 45.000 0.00 0.00 0.00 5.52
135 136 2.094906 GGTACTTCAAAAACCATCCCGC 60.095 50.000 0.00 0.00 33.28 6.13
136 137 3.150767 TGGTACTTCAAAAACCATCCCG 58.849 45.455 0.00 0.00 38.36 5.14
137 138 3.056821 GCTGGTACTTCAAAAACCATCCC 60.057 47.826 0.00 0.00 42.23 3.85
138 139 3.572255 TGCTGGTACTTCAAAAACCATCC 59.428 43.478 0.00 0.00 42.23 3.51
139 140 4.546570 GTGCTGGTACTTCAAAAACCATC 58.453 43.478 0.00 0.00 42.23 3.51
140 141 3.320826 GGTGCTGGTACTTCAAAAACCAT 59.679 43.478 0.00 0.00 42.23 3.55
141 142 2.691011 GGTGCTGGTACTTCAAAAACCA 59.309 45.455 0.00 0.00 40.94 3.67
142 143 2.035449 GGGTGCTGGTACTTCAAAAACC 59.965 50.000 0.00 0.00 0.00 3.27
143 144 2.691011 TGGGTGCTGGTACTTCAAAAAC 59.309 45.455 0.00 0.00 0.00 2.43
144 145 3.019799 TGGGTGCTGGTACTTCAAAAA 57.980 42.857 0.00 0.00 0.00 1.94
145 146 2.738587 TGGGTGCTGGTACTTCAAAA 57.261 45.000 0.00 0.00 0.00 2.44
146 147 2.092103 ACTTGGGTGCTGGTACTTCAAA 60.092 45.455 0.00 0.00 0.00 2.69
147 148 1.493022 ACTTGGGTGCTGGTACTTCAA 59.507 47.619 0.00 0.00 0.00 2.69
148 149 1.136828 ACTTGGGTGCTGGTACTTCA 58.863 50.000 0.00 0.00 0.00 3.02
149 150 2.152016 GAACTTGGGTGCTGGTACTTC 58.848 52.381 0.00 0.00 0.00 3.01
150 151 1.542547 CGAACTTGGGTGCTGGTACTT 60.543 52.381 0.00 0.00 0.00 2.24
151 152 0.034896 CGAACTTGGGTGCTGGTACT 59.965 55.000 0.00 0.00 0.00 2.73
152 153 0.034337 TCGAACTTGGGTGCTGGTAC 59.966 55.000 0.00 0.00 0.00 3.34
153 154 0.981183 ATCGAACTTGGGTGCTGGTA 59.019 50.000 0.00 0.00 0.00 3.25
154 155 0.110486 AATCGAACTTGGGTGCTGGT 59.890 50.000 0.00 0.00 0.00 4.00
155 156 0.804989 GAATCGAACTTGGGTGCTGG 59.195 55.000 0.00 0.00 0.00 4.85
156 157 0.804989 GGAATCGAACTTGGGTGCTG 59.195 55.000 0.00 0.00 0.00 4.41
157 158 0.322546 GGGAATCGAACTTGGGTGCT 60.323 55.000 0.00 0.00 0.00 4.40
158 159 0.322546 AGGGAATCGAACTTGGGTGC 60.323 55.000 0.00 0.00 0.00 5.01
159 160 1.812571 CAAGGGAATCGAACTTGGGTG 59.187 52.381 12.09 0.00 38.29 4.61
160 161 1.702957 TCAAGGGAATCGAACTTGGGT 59.297 47.619 16.95 0.00 41.35 4.51
161 162 2.290323 ACTCAAGGGAATCGAACTTGGG 60.290 50.000 16.12 16.12 45.75 4.12
162 163 3.003480 GACTCAAGGGAATCGAACTTGG 58.997 50.000 16.95 12.26 41.35 3.61
163 164 3.929610 GAGACTCAAGGGAATCGAACTTG 59.070 47.826 13.17 13.17 42.14 3.16
164 165 3.578716 TGAGACTCAAGGGAATCGAACTT 59.421 43.478 1.64 0.00 0.00 2.66
165 166 3.165875 TGAGACTCAAGGGAATCGAACT 58.834 45.455 1.64 0.00 0.00 3.01
166 167 3.594603 TGAGACTCAAGGGAATCGAAC 57.405 47.619 1.64 0.00 0.00 3.95
167 168 4.826274 AATGAGACTCAAGGGAATCGAA 57.174 40.909 9.70 0.00 0.00 3.71
168 169 4.826274 AAATGAGACTCAAGGGAATCGA 57.174 40.909 9.70 0.00 0.00 3.59
169 170 5.886960 AAAAATGAGACTCAAGGGAATCG 57.113 39.130 9.70 0.00 0.00 3.34
216 217 4.594136 AGCGTGTTTTTCCTTTTCGTAAG 58.406 39.130 0.00 0.00 0.00 2.34
217 218 4.619437 AGCGTGTTTTTCCTTTTCGTAA 57.381 36.364 0.00 0.00 0.00 3.18
218 219 4.590226 GAAGCGTGTTTTTCCTTTTCGTA 58.410 39.130 0.00 0.00 0.00 3.43
219 220 3.431856 GAAGCGTGTTTTTCCTTTTCGT 58.568 40.909 0.00 0.00 0.00 3.85
220 221 2.462565 CGAAGCGTGTTTTTCCTTTTCG 59.537 45.455 0.00 0.00 0.00 3.46
270 271 4.031129 AGCAGGTCTGGGCTGCAG 62.031 66.667 10.11 10.11 45.58 4.41
274 275 1.495579 ATTGTCAGCAGGTCTGGGCT 61.496 55.000 0.00 0.00 43.06 5.19
275 276 1.001641 ATTGTCAGCAGGTCTGGGC 60.002 57.895 0.00 0.00 43.06 5.36
276 277 0.393537 GGATTGTCAGCAGGTCTGGG 60.394 60.000 0.00 0.00 43.06 4.45
277 278 0.393537 GGGATTGTCAGCAGGTCTGG 60.394 60.000 0.00 0.00 43.06 3.86
278 279 0.325933 TGGGATTGTCAGCAGGTCTG 59.674 55.000 0.00 0.00 44.21 3.51
279 280 1.211457 GATGGGATTGTCAGCAGGTCT 59.789 52.381 0.00 0.00 0.00 3.85
280 281 1.673168 GATGGGATTGTCAGCAGGTC 58.327 55.000 0.00 0.00 0.00 3.85
281 282 0.107508 CGATGGGATTGTCAGCAGGT 60.108 55.000 0.00 0.00 0.00 4.00
282 283 0.178767 TCGATGGGATTGTCAGCAGG 59.821 55.000 0.00 0.00 0.00 4.85
283 284 2.028420 TTCGATGGGATTGTCAGCAG 57.972 50.000 0.00 0.00 0.00 4.24
284 285 2.487762 GTTTTCGATGGGATTGTCAGCA 59.512 45.455 0.00 0.00 0.00 4.41
285 286 2.487762 TGTTTTCGATGGGATTGTCAGC 59.512 45.455 0.00 0.00 0.00 4.26
286 287 3.127548 CCTGTTTTCGATGGGATTGTCAG 59.872 47.826 0.00 0.00 0.00 3.51
287 288 3.081061 CCTGTTTTCGATGGGATTGTCA 58.919 45.455 0.00 0.00 0.00 3.58
288 289 2.159379 GCCTGTTTTCGATGGGATTGTC 60.159 50.000 0.00 0.00 0.00 3.18
289 290 1.818674 GCCTGTTTTCGATGGGATTGT 59.181 47.619 0.00 0.00 0.00 2.71
290 291 2.094675 AGCCTGTTTTCGATGGGATTG 58.905 47.619 0.00 0.00 0.00 2.67
291 292 2.514458 AGCCTGTTTTCGATGGGATT 57.486 45.000 0.00 0.00 0.00 3.01
292 293 3.644966 TTAGCCTGTTTTCGATGGGAT 57.355 42.857 0.00 0.00 0.00 3.85
293 294 3.278574 CATTAGCCTGTTTTCGATGGGA 58.721 45.455 0.00 0.00 0.00 4.37
294 295 3.016736 ACATTAGCCTGTTTTCGATGGG 58.983 45.455 0.00 0.00 0.00 4.00
295 296 4.155826 TGAACATTAGCCTGTTTTCGATGG 59.844 41.667 0.00 0.00 39.40 3.51
296 297 5.295431 TGAACATTAGCCTGTTTTCGATG 57.705 39.130 0.00 0.00 39.40 3.84
297 298 5.957842 TTGAACATTAGCCTGTTTTCGAT 57.042 34.783 0.00 0.00 39.40 3.59
298 299 5.759506 TTTGAACATTAGCCTGTTTTCGA 57.240 34.783 0.00 0.00 39.40 3.71
299 300 6.128849 CCATTTTGAACATTAGCCTGTTTTCG 60.129 38.462 0.00 0.00 39.40 3.46
300 301 6.928492 TCCATTTTGAACATTAGCCTGTTTTC 59.072 34.615 0.00 0.00 39.40 2.29
301 302 6.825610 TCCATTTTGAACATTAGCCTGTTTT 58.174 32.000 0.00 0.00 39.40 2.43
302 303 6.418057 TCCATTTTGAACATTAGCCTGTTT 57.582 33.333 0.00 0.00 39.40 2.83
303 304 6.223120 GTTCCATTTTGAACATTAGCCTGTT 58.777 36.000 0.00 0.00 43.27 3.16
304 305 5.564651 CGTTCCATTTTGAACATTAGCCTGT 60.565 40.000 4.96 0.00 43.84 4.00
305 306 4.858692 CGTTCCATTTTGAACATTAGCCTG 59.141 41.667 4.96 0.00 43.84 4.85
306 307 4.082245 CCGTTCCATTTTGAACATTAGCCT 60.082 41.667 4.96 0.00 43.84 4.58
307 308 4.173256 CCGTTCCATTTTGAACATTAGCC 58.827 43.478 4.96 0.00 43.84 3.93
308 309 4.082463 TCCCGTTCCATTTTGAACATTAGC 60.082 41.667 4.96 0.00 43.84 3.09
309 310 5.637006 TCCCGTTCCATTTTGAACATTAG 57.363 39.130 4.96 0.00 43.84 1.73
310 311 5.712446 TGATCCCGTTCCATTTTGAACATTA 59.288 36.000 4.96 0.00 43.84 1.90
311 312 4.526262 TGATCCCGTTCCATTTTGAACATT 59.474 37.500 4.96 0.00 43.84 2.71
312 313 4.085733 TGATCCCGTTCCATTTTGAACAT 58.914 39.130 4.96 0.00 43.84 2.71
313 314 3.491342 TGATCCCGTTCCATTTTGAACA 58.509 40.909 4.96 0.00 43.84 3.18
314 315 3.756434 TCTGATCCCGTTCCATTTTGAAC 59.244 43.478 0.00 0.00 40.96 3.18
315 316 4.027674 TCTGATCCCGTTCCATTTTGAA 57.972 40.909 0.00 0.00 0.00 2.69
316 317 3.712016 TCTGATCCCGTTCCATTTTGA 57.288 42.857 0.00 0.00 0.00 2.69
317 318 4.218417 ACTTTCTGATCCCGTTCCATTTTG 59.782 41.667 0.00 0.00 0.00 2.44
318 319 4.407365 ACTTTCTGATCCCGTTCCATTTT 58.593 39.130 0.00 0.00 0.00 1.82
319 320 4.034285 ACTTTCTGATCCCGTTCCATTT 57.966 40.909 0.00 0.00 0.00 2.32
320 321 3.721087 ACTTTCTGATCCCGTTCCATT 57.279 42.857 0.00 0.00 0.00 3.16
321 322 3.610911 GAACTTTCTGATCCCGTTCCAT 58.389 45.455 0.00 0.00 0.00 3.41
322 323 2.611971 CGAACTTTCTGATCCCGTTCCA 60.612 50.000 0.00 0.00 32.50 3.53
323 324 2.000447 CGAACTTTCTGATCCCGTTCC 59.000 52.381 0.00 0.00 32.50 3.62
324 325 2.000447 CCGAACTTTCTGATCCCGTTC 59.000 52.381 0.00 0.00 0.00 3.95
325 326 1.346722 ACCGAACTTTCTGATCCCGTT 59.653 47.619 0.00 0.00 0.00 4.44
326 327 0.974383 ACCGAACTTTCTGATCCCGT 59.026 50.000 0.00 0.00 0.00 5.28
327 328 1.337823 ACACCGAACTTTCTGATCCCG 60.338 52.381 0.00 0.00 0.00 5.14
328 329 2.076863 CACACCGAACTTTCTGATCCC 58.923 52.381 0.00 0.00 0.00 3.85
329 330 1.464997 GCACACCGAACTTTCTGATCC 59.535 52.381 0.00 0.00 0.00 3.36
330 331 2.417719 AGCACACCGAACTTTCTGATC 58.582 47.619 0.00 0.00 0.00 2.92
331 332 2.550830 AGCACACCGAACTTTCTGAT 57.449 45.000 0.00 0.00 0.00 2.90
332 333 3.462483 TTAGCACACCGAACTTTCTGA 57.538 42.857 0.00 0.00 0.00 3.27
333 334 4.749245 AATTAGCACACCGAACTTTCTG 57.251 40.909 0.00 0.00 0.00 3.02
334 335 5.767816 AAAATTAGCACACCGAACTTTCT 57.232 34.783 0.00 0.00 0.00 2.52
335 336 7.858879 TCTTTAAAATTAGCACACCGAACTTTC 59.141 33.333 0.00 0.00 0.00 2.62
336 337 7.708998 TCTTTAAAATTAGCACACCGAACTTT 58.291 30.769 0.00 0.00 0.00 2.66
337 338 7.266922 TCTTTAAAATTAGCACACCGAACTT 57.733 32.000 0.00 0.00 0.00 2.66
338 339 6.870971 TCTTTAAAATTAGCACACCGAACT 57.129 33.333 0.00 0.00 0.00 3.01
339 340 9.274065 CTAATCTTTAAAATTAGCACACCGAAC 57.726 33.333 12.83 0.00 31.83 3.95
340 341 9.221933 TCTAATCTTTAAAATTAGCACACCGAA 57.778 29.630 16.88 4.29 36.88 4.30
341 342 8.780846 TCTAATCTTTAAAATTAGCACACCGA 57.219 30.769 16.88 0.00 36.88 4.69
342 343 9.490663 CTTCTAATCTTTAAAATTAGCACACCG 57.509 33.333 16.88 0.00 36.88 4.94
353 354 9.825109 CAAACCCCAAACTTCTAATCTTTAAAA 57.175 29.630 0.00 0.00 0.00 1.52
354 355 9.203163 TCAAACCCCAAACTTCTAATCTTTAAA 57.797 29.630 0.00 0.00 0.00 1.52
355 356 8.770010 TCAAACCCCAAACTTCTAATCTTTAA 57.230 30.769 0.00 0.00 0.00 1.52
356 357 8.950007 ATCAAACCCCAAACTTCTAATCTTTA 57.050 30.769 0.00 0.00 0.00 1.85
357 358 7.855784 ATCAAACCCCAAACTTCTAATCTTT 57.144 32.000 0.00 0.00 0.00 2.52
358 359 7.855784 AATCAAACCCCAAACTTCTAATCTT 57.144 32.000 0.00 0.00 0.00 2.40
359 360 7.855784 AAATCAAACCCCAAACTTCTAATCT 57.144 32.000 0.00 0.00 0.00 2.40
360 361 7.759886 GCTAAATCAAACCCCAAACTTCTAATC 59.240 37.037 0.00 0.00 0.00 1.75
361 362 7.454694 AGCTAAATCAAACCCCAAACTTCTAAT 59.545 33.333 0.00 0.00 0.00 1.73
362 363 6.780522 AGCTAAATCAAACCCCAAACTTCTAA 59.219 34.615 0.00 0.00 0.00 2.10
363 364 6.311735 AGCTAAATCAAACCCCAAACTTCTA 58.688 36.000 0.00 0.00 0.00 2.10
364 365 5.147767 AGCTAAATCAAACCCCAAACTTCT 58.852 37.500 0.00 0.00 0.00 2.85
365 366 5.468540 AGCTAAATCAAACCCCAAACTTC 57.531 39.130 0.00 0.00 0.00 3.01
366 367 5.887214 AAGCTAAATCAAACCCCAAACTT 57.113 34.783 0.00 0.00 0.00 2.66
367 368 5.508994 CGAAAGCTAAATCAAACCCCAAACT 60.509 40.000 0.00 0.00 0.00 2.66
368 369 4.684242 CGAAAGCTAAATCAAACCCCAAAC 59.316 41.667 0.00 0.00 0.00 2.93
369 370 4.585162 TCGAAAGCTAAATCAAACCCCAAA 59.415 37.500 0.00 0.00 0.00 3.28
370 371 4.022676 GTCGAAAGCTAAATCAAACCCCAA 60.023 41.667 0.00 0.00 0.00 4.12
371 372 3.504520 GTCGAAAGCTAAATCAAACCCCA 59.495 43.478 0.00 0.00 0.00 4.96
372 373 3.756963 AGTCGAAAGCTAAATCAAACCCC 59.243 43.478 0.00 0.00 0.00 4.95
373 374 5.410439 TGTAGTCGAAAGCTAAATCAAACCC 59.590 40.000 0.00 0.00 0.00 4.11
374 375 6.476243 TGTAGTCGAAAGCTAAATCAAACC 57.524 37.500 0.00 0.00 0.00 3.27
375 376 7.573627 ACTTGTAGTCGAAAGCTAAATCAAAC 58.426 34.615 0.00 0.00 0.00 2.93
376 377 7.724305 ACTTGTAGTCGAAAGCTAAATCAAA 57.276 32.000 0.00 0.00 0.00 2.69
377 378 7.439955 TGAACTTGTAGTCGAAAGCTAAATCAA 59.560 33.333 0.00 0.00 0.00 2.57
378 379 6.926826 TGAACTTGTAGTCGAAAGCTAAATCA 59.073 34.615 0.00 0.00 0.00 2.57
379 380 7.347508 TGAACTTGTAGTCGAAAGCTAAATC 57.652 36.000 0.00 0.00 0.00 2.17
380 381 7.656137 TCTTGAACTTGTAGTCGAAAGCTAAAT 59.344 33.333 0.00 0.00 0.00 1.40
381 382 6.982141 TCTTGAACTTGTAGTCGAAAGCTAAA 59.018 34.615 0.00 0.00 0.00 1.85
382 383 6.509656 TCTTGAACTTGTAGTCGAAAGCTAA 58.490 36.000 0.00 0.00 0.00 3.09
383 384 6.080648 TCTTGAACTTGTAGTCGAAAGCTA 57.919 37.500 0.00 0.00 0.00 3.32
384 385 4.945246 TCTTGAACTTGTAGTCGAAAGCT 58.055 39.130 0.00 0.00 0.00 3.74
385 386 5.847670 ATCTTGAACTTGTAGTCGAAAGC 57.152 39.130 0.00 0.00 0.00 3.51
411 412 9.495572 TCTTTTTGCAAAGGAAAAAGTCTAAAA 57.504 25.926 25.19 10.75 44.98 1.52
412 413 8.931775 GTCTTTTTGCAAAGGAAAAAGTCTAAA 58.068 29.630 25.19 11.26 44.98 1.85
413 414 8.091449 TGTCTTTTTGCAAAGGAAAAAGTCTAA 58.909 29.630 25.19 11.53 44.98 2.10
414 415 7.544217 GTGTCTTTTTGCAAAGGAAAAAGTCTA 59.456 33.333 25.19 15.35 44.98 2.59
415 416 6.368791 GTGTCTTTTTGCAAAGGAAAAAGTCT 59.631 34.615 25.19 0.00 44.98 3.24
416 417 6.534059 GTGTCTTTTTGCAAAGGAAAAAGTC 58.466 36.000 25.19 21.90 44.98 3.01
417 418 5.120053 CGTGTCTTTTTGCAAAGGAAAAAGT 59.880 36.000 25.19 0.00 44.98 2.66
418 419 5.445806 CCGTGTCTTTTTGCAAAGGAAAAAG 60.446 40.000 22.39 22.39 45.61 2.27
419 420 4.390297 CCGTGTCTTTTTGCAAAGGAAAAA 59.610 37.500 12.41 8.49 40.08 1.94
420 421 3.929610 CCGTGTCTTTTTGCAAAGGAAAA 59.070 39.130 12.41 2.94 40.08 2.29
421 422 3.516615 CCGTGTCTTTTTGCAAAGGAAA 58.483 40.909 12.41 7.40 40.08 3.13
422 423 2.737039 GCCGTGTCTTTTTGCAAAGGAA 60.737 45.455 12.41 4.06 40.08 3.36
423 424 1.202359 GCCGTGTCTTTTTGCAAAGGA 60.202 47.619 12.41 11.73 40.08 3.36
424 425 1.208259 GCCGTGTCTTTTTGCAAAGG 58.792 50.000 12.41 9.31 40.08 3.11
425 426 1.854126 CTGCCGTGTCTTTTTGCAAAG 59.146 47.619 12.41 1.49 40.91 2.77
426 427 1.470632 CCTGCCGTGTCTTTTTGCAAA 60.471 47.619 8.05 8.05 0.00 3.68
427 428 0.102120 CCTGCCGTGTCTTTTTGCAA 59.898 50.000 0.00 0.00 0.00 4.08
428 429 1.732917 CCTGCCGTGTCTTTTTGCA 59.267 52.632 0.00 0.00 0.00 4.08
429 430 1.661509 GCCTGCCGTGTCTTTTTGC 60.662 57.895 0.00 0.00 0.00 3.68
430 431 0.318107 CTGCCTGCCGTGTCTTTTTG 60.318 55.000 0.00 0.00 0.00 2.44
431 432 1.455383 CCTGCCTGCCGTGTCTTTTT 61.455 55.000 0.00 0.00 0.00 1.94
432 433 1.898574 CCTGCCTGCCGTGTCTTTT 60.899 57.895 0.00 0.00 0.00 2.27
433 434 2.281761 CCTGCCTGCCGTGTCTTT 60.282 61.111 0.00 0.00 0.00 2.52
434 435 3.537206 GACCTGCCTGCCGTGTCTT 62.537 63.158 0.00 0.00 0.00 3.01
435 436 4.008933 GACCTGCCTGCCGTGTCT 62.009 66.667 0.00 0.00 0.00 3.41
442 443 4.742201 TCTTCGCGACCTGCCTGC 62.742 66.667 9.15 0.00 42.08 4.85
443 444 2.811317 GTCTTCGCGACCTGCCTG 60.811 66.667 9.15 0.00 42.08 4.85
444 445 4.421479 CGTCTTCGCGACCTGCCT 62.421 66.667 9.15 0.00 42.08 4.75
445 446 3.909258 TTCGTCTTCGCGACCTGCC 62.909 63.158 9.15 0.00 40.85 4.85
446 447 1.554042 TTTTCGTCTTCGCGACCTGC 61.554 55.000 9.15 0.00 40.85 4.85
447 448 1.068474 ATTTTCGTCTTCGCGACCTG 58.932 50.000 9.15 1.87 40.85 4.00
448 449 1.068474 CATTTTCGTCTTCGCGACCT 58.932 50.000 9.15 0.00 40.85 3.85
449 450 0.518559 GCATTTTCGTCTTCGCGACC 60.519 55.000 9.15 0.00 40.85 4.79
450 451 0.162933 TGCATTTTCGTCTTCGCGAC 59.837 50.000 9.15 0.00 40.85 5.19
451 452 1.060553 GATGCATTTTCGTCTTCGCGA 59.939 47.619 3.71 3.71 39.28 5.87
452 453 1.446731 GATGCATTTTCGTCTTCGCG 58.553 50.000 0.00 0.00 36.96 5.87
453 454 1.815132 GGATGCATTTTCGTCTTCGC 58.185 50.000 0.00 0.00 36.96 4.70
454 455 1.852077 GCGGATGCATTTTCGTCTTCG 60.852 52.381 0.00 0.00 42.15 3.79
455 456 1.815132 GCGGATGCATTTTCGTCTTC 58.185 50.000 0.00 0.00 42.15 2.87
456 457 0.096976 CGCGGATGCATTTTCGTCTT 59.903 50.000 0.00 0.00 42.97 3.01
457 458 1.715585 CGCGGATGCATTTTCGTCT 59.284 52.632 0.00 0.00 42.97 4.18
458 459 1.934476 GCGCGGATGCATTTTCGTC 60.934 57.895 8.83 2.26 42.97 4.20
459 460 2.100216 GCGCGGATGCATTTTCGT 59.900 55.556 8.83 0.00 42.97 3.85
460 461 3.012888 CGCGCGGATGCATTTTCG 61.013 61.111 24.84 7.15 42.97 3.46
461 462 1.514014 AACGCGCGGATGCATTTTC 60.514 52.632 35.22 0.00 42.97 2.29
462 463 1.801113 CAACGCGCGGATGCATTTT 60.801 52.632 35.22 13.77 42.97 1.82
463 464 2.193865 TTCAACGCGCGGATGCATTT 62.194 50.000 35.22 14.60 42.97 2.32
464 465 2.685829 TTCAACGCGCGGATGCATT 61.686 52.632 35.22 15.42 42.97 3.56
465 466 3.124270 TTCAACGCGCGGATGCAT 61.124 55.556 35.22 8.98 42.97 3.96
466 467 4.083600 GTTCAACGCGCGGATGCA 62.084 61.111 35.22 19.86 42.97 3.96
476 477 2.733218 TCTGCCGAGCGTTCAACG 60.733 61.111 5.28 5.28 45.88 4.10
477 478 2.668280 GGTCTGCCGAGCGTTCAAC 61.668 63.158 0.00 0.00 0.00 3.18
478 479 2.357034 GGTCTGCCGAGCGTTCAA 60.357 61.111 0.00 0.00 0.00 2.69
479 480 2.652382 TTTGGTCTGCCGAGCGTTCA 62.652 55.000 0.00 0.00 40.48 3.18
480 481 1.959226 TTTGGTCTGCCGAGCGTTC 60.959 57.895 2.83 0.00 40.48 3.95
481 482 2.110213 TTTGGTCTGCCGAGCGTT 59.890 55.556 2.83 0.00 40.48 4.84
482 483 2.665185 GTTTGGTCTGCCGAGCGT 60.665 61.111 2.83 0.00 40.48 5.07
483 484 3.777925 CGTTTGGTCTGCCGAGCG 61.778 66.667 2.83 0.00 44.36 5.03
484 485 1.298859 ATTCGTTTGGTCTGCCGAGC 61.299 55.000 0.00 0.00 37.67 5.03
485 486 0.443869 CATTCGTTTGGTCTGCCGAG 59.556 55.000 0.00 0.00 37.67 4.63
486 487 0.034198 TCATTCGTTTGGTCTGCCGA 59.966 50.000 0.00 0.00 37.67 5.54
487 488 0.165944 GTCATTCGTTTGGTCTGCCG 59.834 55.000 0.00 0.00 37.67 5.69
488 489 1.234821 TGTCATTCGTTTGGTCTGCC 58.765 50.000 0.00 0.00 0.00 4.85
489 490 3.042887 GTTTGTCATTCGTTTGGTCTGC 58.957 45.455 0.00 0.00 0.00 4.26
490 491 4.285807 TGTTTGTCATTCGTTTGGTCTG 57.714 40.909 0.00 0.00 0.00 3.51
491 492 4.792704 GCATGTTTGTCATTCGTTTGGTCT 60.793 41.667 0.00 0.00 34.09 3.85
492 493 3.425193 GCATGTTTGTCATTCGTTTGGTC 59.575 43.478 0.00 0.00 34.09 4.02
493 494 3.181482 TGCATGTTTGTCATTCGTTTGGT 60.181 39.130 0.00 0.00 34.09 3.67
494 495 3.379240 TGCATGTTTGTCATTCGTTTGG 58.621 40.909 0.00 0.00 34.09 3.28
495 496 3.121261 GCTGCATGTTTGTCATTCGTTTG 60.121 43.478 0.00 0.00 34.09 2.93
496 497 3.052036 GCTGCATGTTTGTCATTCGTTT 58.948 40.909 0.00 0.00 34.09 3.60
497 498 2.607771 GGCTGCATGTTTGTCATTCGTT 60.608 45.455 0.50 0.00 34.09 3.85
498 499 1.068333 GGCTGCATGTTTGTCATTCGT 60.068 47.619 0.50 0.00 34.09 3.85
499 500 1.068402 TGGCTGCATGTTTGTCATTCG 60.068 47.619 0.50 0.00 34.09 3.34
500 501 2.728690 TGGCTGCATGTTTGTCATTC 57.271 45.000 0.50 0.00 34.09 2.67
501 502 2.548493 GGTTGGCTGCATGTTTGTCATT 60.548 45.455 0.50 0.00 34.09 2.57
502 503 1.001181 GGTTGGCTGCATGTTTGTCAT 59.999 47.619 0.50 0.00 37.22 3.06
503 504 0.388659 GGTTGGCTGCATGTTTGTCA 59.611 50.000 0.50 0.00 0.00 3.58
504 505 0.319813 GGGTTGGCTGCATGTTTGTC 60.320 55.000 0.50 0.00 0.00 3.18
505 506 1.047596 TGGGTTGGCTGCATGTTTGT 61.048 50.000 0.50 0.00 0.00 2.83
506 507 0.106335 TTGGGTTGGCTGCATGTTTG 59.894 50.000 0.50 0.00 0.00 2.93
507 508 0.835941 TTTGGGTTGGCTGCATGTTT 59.164 45.000 0.50 0.00 0.00 2.83
508 509 1.058284 ATTTGGGTTGGCTGCATGTT 58.942 45.000 0.50 0.00 0.00 2.71
509 510 0.322322 CATTTGGGTTGGCTGCATGT 59.678 50.000 0.50 0.00 0.00 3.21
510 511 0.609151 TCATTTGGGTTGGCTGCATG 59.391 50.000 0.50 0.00 0.00 4.06
511 512 1.350071 TTCATTTGGGTTGGCTGCAT 58.650 45.000 0.50 0.00 0.00 3.96
512 513 1.350071 ATTCATTTGGGTTGGCTGCA 58.650 45.000 0.50 0.00 0.00 4.41
513 514 3.608316 TTATTCATTTGGGTTGGCTGC 57.392 42.857 0.00 0.00 0.00 5.25
514 515 5.997129 ACTTTTTATTCATTTGGGTTGGCTG 59.003 36.000 0.00 0.00 0.00 4.85
515 516 5.997129 CACTTTTTATTCATTTGGGTTGGCT 59.003 36.000 0.00 0.00 0.00 4.75
516 517 5.994668 TCACTTTTTATTCATTTGGGTTGGC 59.005 36.000 0.00 0.00 0.00 4.52
517 518 7.497249 TGTTCACTTTTTATTCATTTGGGTTGG 59.503 33.333 0.00 0.00 0.00 3.77
518 519 8.430801 TGTTCACTTTTTATTCATTTGGGTTG 57.569 30.769 0.00 0.00 0.00 3.77
519 520 9.454859 TTTGTTCACTTTTTATTCATTTGGGTT 57.545 25.926 0.00 0.00 0.00 4.11
520 521 9.454859 TTTTGTTCACTTTTTATTCATTTGGGT 57.545 25.926 0.00 0.00 0.00 4.51
525 526 9.934190 GCACATTTTGTTCACTTTTTATTCATT 57.066 25.926 0.00 0.00 0.00 2.57
526 527 8.274939 CGCACATTTTGTTCACTTTTTATTCAT 58.725 29.630 0.00 0.00 0.00 2.57
527 528 7.276658 ACGCACATTTTGTTCACTTTTTATTCA 59.723 29.630 0.00 0.00 0.00 2.57
528 529 7.617557 ACGCACATTTTGTTCACTTTTTATTC 58.382 30.769 0.00 0.00 0.00 1.75
529 530 7.532682 ACGCACATTTTGTTCACTTTTTATT 57.467 28.000 0.00 0.00 0.00 1.40
530 531 7.397970 CAACGCACATTTTGTTCACTTTTTAT 58.602 30.769 0.00 0.00 0.00 1.40
531 532 6.183360 CCAACGCACATTTTGTTCACTTTTTA 60.183 34.615 0.00 0.00 0.00 1.52
532 533 5.390356 CCAACGCACATTTTGTTCACTTTTT 60.390 36.000 0.00 0.00 0.00 1.94
533 534 4.092675 CCAACGCACATTTTGTTCACTTTT 59.907 37.500 0.00 0.00 0.00 2.27
534 535 3.616379 CCAACGCACATTTTGTTCACTTT 59.384 39.130 0.00 0.00 0.00 2.66
535 536 3.119316 TCCAACGCACATTTTGTTCACTT 60.119 39.130 0.00 0.00 0.00 3.16
536 537 2.425312 TCCAACGCACATTTTGTTCACT 59.575 40.909 0.00 0.00 0.00 3.41
537 538 2.803451 TCCAACGCACATTTTGTTCAC 58.197 42.857 0.00 0.00 0.00 3.18
538 539 3.637432 GATCCAACGCACATTTTGTTCA 58.363 40.909 0.00 0.00 0.00 3.18
539 540 2.656422 CGATCCAACGCACATTTTGTTC 59.344 45.455 0.00 0.00 0.00 3.18
540 541 2.606795 CCGATCCAACGCACATTTTGTT 60.607 45.455 0.00 0.00 0.00 2.83
541 542 1.068610 CCGATCCAACGCACATTTTGT 60.069 47.619 0.00 0.00 0.00 2.83
542 543 1.068610 ACCGATCCAACGCACATTTTG 60.069 47.619 0.00 0.00 0.00 2.44
543 544 1.243902 ACCGATCCAACGCACATTTT 58.756 45.000 0.00 0.00 0.00 1.82
547 548 1.444724 CGTACCGATCCAACGCACA 60.445 57.895 0.00 0.00 0.00 4.57
549 550 0.525311 TAACGTACCGATCCAACGCA 59.475 50.000 8.55 0.00 40.18 5.24
557 558 3.015327 AGAGCAACTCTAACGTACCGAT 58.985 45.455 0.00 0.00 39.28 4.18
562 563 3.377485 CAGGCTAGAGCAACTCTAACGTA 59.623 47.826 3.54 0.00 41.74 3.57
563 564 2.164624 CAGGCTAGAGCAACTCTAACGT 59.835 50.000 3.54 0.98 41.74 3.99
568 569 1.621672 GGCCAGGCTAGAGCAACTCT 61.622 60.000 12.43 2.23 43.83 3.24
614 615 0.318699 GTTGGCTTGAAAAGGACGCC 60.319 55.000 0.00 0.00 46.35 5.68
713 714 1.885887 CAGTTGGTGGGTATGGTTGTG 59.114 52.381 0.00 0.00 0.00 3.33
714 715 1.203001 CCAGTTGGTGGGTATGGTTGT 60.203 52.381 0.00 0.00 43.63 3.32
745 746 1.536418 CTGTGGGTCCAGAGGGTGA 60.536 63.158 6.28 0.00 34.21 4.02
773 774 2.352814 GCGTCAGTGTGAACTAGACCAT 60.353 50.000 0.00 0.00 0.00 3.55
774 775 1.000607 GCGTCAGTGTGAACTAGACCA 60.001 52.381 0.00 0.00 0.00 4.02
786 787 2.844146 GACCGTTTCGCGTCAGTG 59.156 61.111 5.77 0.00 39.32 3.66
787 788 2.728383 CGACCGTTTCGCGTCAGT 60.728 61.111 5.77 0.00 41.87 3.41
795 796 4.368543 ACTCGCCCCGACCGTTTC 62.369 66.667 0.00 0.00 0.00 2.78
796 797 4.675029 CACTCGCCCCGACCGTTT 62.675 66.667 0.00 0.00 0.00 3.60
961 964 1.375780 GGCACGCGGTAGGGTTTAA 60.376 57.895 12.47 0.00 41.93 1.52
962 965 2.265424 GGCACGCGGTAGGGTTTA 59.735 61.111 12.47 0.00 41.93 2.01
1205 1429 2.182030 CGAGGTCGAGGAAGCACC 59.818 66.667 0.00 0.00 43.02 5.01
1536 1760 1.416373 GTTTCGAAGTGGAGGTCGAC 58.584 55.000 7.13 7.13 45.35 4.20
1761 1985 1.913722 CCTGAAGGATCCAGCAGCT 59.086 57.895 22.00 0.00 37.39 4.24
1832 2056 3.793144 CAGGCAGCGGCGAGAAAC 61.793 66.667 12.98 0.00 42.47 2.78
2009 2233 4.081862 AGAGCATTCCATCAAACACATTGG 60.082 41.667 0.00 0.00 39.62 3.16
2201 2425 3.603532 TCATTCAAGTCATCCTGCTGAC 58.396 45.455 0.00 0.00 44.78 3.51
2268 2492 4.631377 TCACACCTTTGCATCTTTCTATCG 59.369 41.667 0.00 0.00 0.00 2.92
2272 2496 4.147321 ACATCACACCTTTGCATCTTTCT 58.853 39.130 0.00 0.00 0.00 2.52
2566 2790 9.725019 TGTCATGATTTGAGTAAAACTACTGAT 57.275 29.630 0.00 0.00 34.17 2.90
2567 2791 9.208022 CTGTCATGATTTGAGTAAAACTACTGA 57.792 33.333 0.00 0.00 34.17 3.41
2568 2792 8.446273 CCTGTCATGATTTGAGTAAAACTACTG 58.554 37.037 0.00 0.00 34.17 2.74
2569 2793 8.375506 TCCTGTCATGATTTGAGTAAAACTACT 58.624 33.333 0.00 0.00 34.17 2.57
2570 2794 8.547967 TCCTGTCATGATTTGAGTAAAACTAC 57.452 34.615 0.00 0.00 34.17 2.73
2571 2795 8.375506 ACTCCTGTCATGATTTGAGTAAAACTA 58.624 33.333 17.33 0.00 34.17 2.24
2636 2860 6.389091 CAAAACAGCAAATGGACATTAGCTA 58.611 36.000 0.00 0.00 0.00 3.32
2702 2926 4.034285 AGATAAGCCCCAATAATTCCGG 57.966 45.455 0.00 0.00 0.00 5.14
2764 2988 5.048573 CACATCATCCAAACAACATGACTGA 60.049 40.000 0.00 0.00 29.36 3.41
2870 3094 3.055963 TCCCAAAAATAGGTGCTTGCATG 60.056 43.478 0.00 0.00 0.00 4.06
2987 3213 4.996758 TCCTGAAACCATACATGCATATCG 59.003 41.667 0.00 0.00 0.00 2.92
3072 3298 5.707242 AAACTGAAAAGCCTTAGGTTAGC 57.293 39.130 0.00 0.00 32.14 3.09
3336 3585 8.656806 TGACAGGAGTAGAATTAAGGAGAAAAA 58.343 33.333 0.00 0.00 0.00 1.94
3337 3586 8.202461 TGACAGGAGTAGAATTAAGGAGAAAA 57.798 34.615 0.00 0.00 0.00 2.29
3338 3587 7.792364 TGACAGGAGTAGAATTAAGGAGAAA 57.208 36.000 0.00 0.00 0.00 2.52
3339 3588 7.979786 ATGACAGGAGTAGAATTAAGGAGAA 57.020 36.000 0.00 0.00 0.00 2.87
3340 3589 7.979786 AATGACAGGAGTAGAATTAAGGAGA 57.020 36.000 0.00 0.00 0.00 3.71
3341 3590 8.696374 TGTAATGACAGGAGTAGAATTAAGGAG 58.304 37.037 0.00 0.00 0.00 3.69
3342 3591 8.475639 GTGTAATGACAGGAGTAGAATTAAGGA 58.524 37.037 0.00 0.00 35.82 3.36
3343 3592 8.258007 TGTGTAATGACAGGAGTAGAATTAAGG 58.742 37.037 0.00 0.00 35.82 2.69
3344 3593 9.823647 ATGTGTAATGACAGGAGTAGAATTAAG 57.176 33.333 0.00 0.00 35.82 1.85
3347 3596 9.167311 GAAATGTGTAATGACAGGAGTAGAATT 57.833 33.333 0.00 0.00 35.82 2.17
3348 3597 7.770897 GGAAATGTGTAATGACAGGAGTAGAAT 59.229 37.037 0.00 0.00 35.82 2.40
3349 3598 7.103641 GGAAATGTGTAATGACAGGAGTAGAA 58.896 38.462 0.00 0.00 35.82 2.10
3350 3599 6.351881 GGGAAATGTGTAATGACAGGAGTAGA 60.352 42.308 0.00 0.00 35.82 2.59
3351 3600 5.817816 GGGAAATGTGTAATGACAGGAGTAG 59.182 44.000 0.00 0.00 35.82 2.57
3352 3601 5.487488 AGGGAAATGTGTAATGACAGGAGTA 59.513 40.000 0.00 0.00 35.82 2.59
3353 3602 4.289672 AGGGAAATGTGTAATGACAGGAGT 59.710 41.667 0.00 0.00 35.82 3.85
3354 3603 4.637534 CAGGGAAATGTGTAATGACAGGAG 59.362 45.833 0.00 0.00 35.82 3.69
3409 3658 3.053831 GCCCTTAGCAACAGTAACTGA 57.946 47.619 0.00 0.00 42.97 3.41
3557 3806 0.535780 TGCTGCTTGTGTTCTCCCTG 60.536 55.000 0.00 0.00 0.00 4.45
3644 3893 3.995199 ACATCCAGTCACCGCTATATTG 58.005 45.455 0.00 0.00 0.00 1.90
3800 4049 5.451908 TCTGCTTTGTTCATTTTGATCGAC 58.548 37.500 0.00 0.00 0.00 4.20
3816 4065 1.075659 GGGCCTCCAACTCTGCTTT 59.924 57.895 0.84 0.00 0.00 3.51
3998 4247 9.890629 TCAAGACAACATATTCTTTGCTATACT 57.109 29.630 0.00 0.00 29.23 2.12
4026 4275 4.863707 GCAGGATGAGATGCCGAA 57.136 55.556 0.00 0.00 39.69 4.30
4192 4441 0.324460 ACCTTCCAGTAGGACCTCGG 60.324 60.000 0.00 0.00 45.73 4.63
4214 4463 3.066621 GCACATGAAGAAACCAGTCACAA 59.933 43.478 0.00 0.00 0.00 3.33
4215 4464 2.618241 GCACATGAAGAAACCAGTCACA 59.382 45.455 0.00 0.00 0.00 3.58
4220 4469 2.486982 CAGGAGCACATGAAGAAACCAG 59.513 50.000 0.00 0.00 0.00 4.00
4234 4483 4.695455 GCAGAAATTTGTACTACAGGAGCA 59.305 41.667 0.00 0.00 0.00 4.26
4294 4543 6.428083 TTCCAGGAATGTTCAGTTACACTA 57.572 37.500 0.00 0.00 0.00 2.74
4351 4605 9.520515 AAAAACAATTGACAGATCATAGTAGGT 57.479 29.630 13.59 0.00 33.85 3.08
4395 4649 1.115467 ACGAGATGGGCCTCAAGTAG 58.885 55.000 4.53 0.00 32.86 2.57
4399 4653 0.909610 AGGAACGAGATGGGCCTCAA 60.910 55.000 4.53 0.00 32.86 3.02
4401 4655 0.253327 AAAGGAACGAGATGGGCCTC 59.747 55.000 4.53 0.00 0.00 4.70
4402 4656 0.253327 GAAAGGAACGAGATGGGCCT 59.747 55.000 4.53 0.00 0.00 5.19
4403 4657 0.748367 GGAAAGGAACGAGATGGGCC 60.748 60.000 0.00 0.00 0.00 5.80
4404 4658 0.253327 AGGAAAGGAACGAGATGGGC 59.747 55.000 0.00 0.00 0.00 5.36
4405 4659 3.197983 ACTTAGGAAAGGAACGAGATGGG 59.802 47.826 0.00 0.00 37.01 4.00
4406 4660 4.184629 CACTTAGGAAAGGAACGAGATGG 58.815 47.826 0.00 0.00 37.01 3.51
4412 4666 2.178912 TGCCACTTAGGAAAGGAACG 57.821 50.000 0.00 0.00 41.22 3.95
4488 4745 0.819259 GCAACAGAACAGAGCACCCA 60.819 55.000 0.00 0.00 0.00 4.51
4500 4757 0.694771 ATTCTCCAGCCTGCAACAGA 59.305 50.000 0.00 0.00 32.44 3.41
4536 4793 3.618351 TCCTAGGGTAGTCAGTCTTTCG 58.382 50.000 9.46 0.00 0.00 3.46
4560 4817 5.970317 TTCCAGCCATGCATATATGAAAG 57.030 39.130 17.10 2.72 0.00 2.62
4563 4820 4.018233 TGGATTCCAGCCATGCATATATGA 60.018 41.667 17.10 2.36 0.00 2.15
4593 4850 3.210227 TGATTTGGCTTGACACGAGAAA 58.790 40.909 0.00 0.00 0.00 2.52
4670 4928 9.284968 TGGTTGAAAATTTTAAGTGGTTTCAAA 57.715 25.926 2.75 0.00 44.99 2.69
4683 4941 8.482128 TGAGAATACCTTGTGGTTGAAAATTTT 58.518 29.630 2.28 2.28 46.05 1.82
4724 4983 7.624360 ATTTAACTACTCAAATCATTCGCCA 57.376 32.000 0.00 0.00 0.00 5.69
4725 4984 7.044052 GCAATTTAACTACTCAAATCATTCGCC 60.044 37.037 0.00 0.00 0.00 5.54
4727 4986 9.559958 AAGCAATTTAACTACTCAAATCATTCG 57.440 29.630 0.00 0.00 0.00 3.34
4736 4995 9.515020 CAAAAGTTCAAGCAATTTAACTACTCA 57.485 29.630 0.00 0.00 32.09 3.41
4821 5080 1.471676 CGTTGAGTGTATCCAGGGCTC 60.472 57.143 0.00 0.00 0.00 4.70
4862 5122 1.502231 CACATACGGCTACAGGATGC 58.498 55.000 0.00 0.00 42.53 3.91
4888 5148 0.767375 GGCCCAGATGGAGCAGATAA 59.233 55.000 0.00 0.00 37.39 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.