Multiple sequence alignment - TraesCS1A01G219200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G219200 chr1A 100.000 3121 0 0 1 3121 387842766 387839646 0.000000e+00 5764
1 TraesCS1A01G219200 chr1D 92.277 1981 78 31 457 2404 308460946 308459008 0.000000e+00 2741
2 TraesCS1A01G219200 chr1D 90.487 452 39 4 1 450 42828055 42828504 7.450000e-166 593
3 TraesCS1A01G219200 chr1D 83.509 570 35 23 2537 3098 308458863 308458345 7.830000e-131 477
4 TraesCS1A01G219200 chr1B 92.279 1606 65 28 834 2404 418106965 418105384 0.000000e+00 2224
5 TraesCS1A01G219200 chr1B 87.436 390 31 10 449 836 418107612 418107239 1.720000e-117 433
6 TraesCS1A01G219200 chr1B 81.982 444 24 27 2526 2958 418105273 418104875 3.000000e-85 326
7 TraesCS1A01G219200 chr1B 96.104 77 3 0 2402 2478 418105354 418105278 3.270000e-25 126
8 TraesCS1A01G219200 chr6B 91.667 444 35 2 2 443 30096977 30096534 5.720000e-172 614
9 TraesCS1A01G219200 chr6B 91.667 444 35 2 2 443 30112773 30112330 5.720000e-172 614
10 TraesCS1A01G219200 chr2D 90.426 470 38 7 1 467 57099247 57099712 2.060000e-171 612
11 TraesCS1A01G219200 chr2D 91.275 447 38 1 1 446 570988988 570988542 2.660000e-170 608
12 TraesCS1A01G219200 chr2D 86.567 201 18 5 1792 1992 527547521 527547712 2.440000e-51 213
13 TraesCS1A01G219200 chr2D 87.500 88 11 0 1499 1586 527547111 527547198 5.510000e-18 102
14 TraesCS1A01G219200 chr2A 91.216 444 37 2 1 442 748703235 748703678 1.240000e-168 603
15 TraesCS1A01G219200 chr2A 86.567 201 18 5 1792 1992 672415937 672416128 2.440000e-51 213
16 TraesCS1A01G219200 chr2A 81.890 127 20 2 1460 1586 672415484 672415607 1.530000e-18 104
17 TraesCS1A01G219200 chr5B 90.728 453 38 4 1 449 54381090 54381542 4.450000e-168 601
18 TraesCS1A01G219200 chr5B 86.869 99 10 3 1489 1587 407817609 407817514 1.180000e-19 108
19 TraesCS1A01G219200 chr5A 91.011 445 38 2 1 443 338276150 338275706 1.600000e-167 599
20 TraesCS1A01G219200 chr5A 82.759 203 20 8 1792 1994 448091108 448091295 1.930000e-37 167
21 TraesCS1A01G219200 chr5A 89.412 85 9 0 1503 1587 448090731 448090815 1.180000e-19 108
22 TraesCS1A01G219200 chr4D 90.466 451 42 1 1 450 109907452 109907902 7.450000e-166 593
23 TraesCS1A01G219200 chr7A 80.769 286 47 7 1711 1995 48526185 48526463 1.880000e-52 217
24 TraesCS1A01G219200 chr7A 83.920 199 32 0 1710 1908 48756249 48756447 1.140000e-44 191
25 TraesCS1A01G219200 chr7A 79.021 286 52 7 1711 1995 48715869 48716147 4.110000e-44 189
26 TraesCS1A01G219200 chr7D 80.277 289 49 6 1711 1998 46711921 46711640 8.770000e-51 211
27 TraesCS1A01G219200 chr7D 81.967 122 19 1 1456 1577 46712127 46712009 1.980000e-17 100
28 TraesCS1A01G219200 chr4A 80.351 285 50 4 1710 1994 660624974 660625252 8.770000e-51 211
29 TraesCS1A01G219200 chr4A 80.412 291 43 12 1710 1997 660654522 660654801 3.150000e-50 209
30 TraesCS1A01G219200 chr4A 79.791 287 50 6 1710 1995 660452662 660452941 5.280000e-48 202
31 TraesCS1A01G219200 chr5D 82.266 203 21 7 1792 1994 344399998 344400185 8.960000e-36 161
32 TraesCS1A01G219200 chr5D 86.869 99 10 3 1489 1587 344399611 344399706 1.180000e-19 108
33 TraesCS1A01G219200 chr2B 81.890 127 20 2 1460 1586 624891601 624891724 1.530000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G219200 chr1A 387839646 387842766 3120 True 5764.00 5764 100.00000 1 3121 1 chr1A.!!$R1 3120
1 TraesCS1A01G219200 chr1D 308458345 308460946 2601 True 1609.00 2741 87.89300 457 3098 2 chr1D.!!$R1 2641
2 TraesCS1A01G219200 chr1B 418104875 418107612 2737 True 777.25 2224 89.45025 449 2958 4 chr1B.!!$R1 2509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
103 104 0.034059 AGGTCGGTGCTTCAGTTCTG 59.966 55.0 0.00 0.0 0.00 3.02 F
200 201 0.034896 GTGTGAGACCCAATCCACGT 59.965 55.0 0.00 0.0 33.52 4.49 F
280 281 0.179018 ATTAGGCCCGGACATTCAGC 60.179 55.0 0.73 0.0 0.00 4.26 F
400 401 0.179037 AGTATGGCTGCATGCATCGT 60.179 50.0 22.97 19.0 45.15 3.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1010 1304 0.397564 GGTGTCCCTCCCGTTAACAA 59.602 55.0 6.39 0.0 0.00 2.83 R
1685 1989 0.457853 TCAACGCACGTAGAGCATCC 60.458 55.0 0.00 0.0 46.65 3.51 R
1689 1993 0.457853 TCCATCAACGCACGTAGAGC 60.458 55.0 0.00 0.0 41.73 4.09 R
2131 2435 0.874390 AACGCATGACATGACACACC 59.126 50.0 19.76 0.0 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.487202 GCGTTTGATGCGCGGAGA 61.487 61.111 8.83 0.00 45.36 3.71
18 19 2.813179 GCGTTTGATGCGCGGAGAT 61.813 57.895 8.83 0.00 45.36 2.75
19 20 1.011904 CGTTTGATGCGCGGAGATG 60.012 57.895 8.83 0.00 0.00 2.90
20 21 1.353103 GTTTGATGCGCGGAGATGG 59.647 57.895 8.83 0.00 0.00 3.51
22 23 1.089481 TTTGATGCGCGGAGATGGAC 61.089 55.000 8.83 0.00 0.00 4.02
23 24 1.960040 TTGATGCGCGGAGATGGACT 61.960 55.000 8.83 0.00 0.00 3.85
24 25 1.663074 GATGCGCGGAGATGGACTC 60.663 63.158 8.83 0.00 44.24 3.36
25 26 3.490793 ATGCGCGGAGATGGACTCG 62.491 63.158 8.83 0.00 45.76 4.18
29 30 4.193334 CGGAGATGGACTCGCGCA 62.193 66.667 8.75 0.00 45.76 6.09
30 31 2.279120 GGAGATGGACTCGCGCAG 60.279 66.667 8.75 6.77 45.76 5.18
31 32 2.279120 GAGATGGACTCGCGCAGG 60.279 66.667 8.75 0.80 35.84 4.85
32 33 2.755876 AGATGGACTCGCGCAGGA 60.756 61.111 8.75 0.00 0.00 3.86
33 34 2.279120 GATGGACTCGCGCAGGAG 60.279 66.667 8.75 9.70 39.97 3.69
34 35 2.755876 ATGGACTCGCGCAGGAGA 60.756 61.111 17.68 0.91 37.49 3.71
35 36 2.284798 GATGGACTCGCGCAGGAGAA 62.285 60.000 17.68 4.86 37.49 2.87
36 37 2.202676 GGACTCGCGCAGGAGAAG 60.203 66.667 17.68 0.00 37.49 2.85
37 38 2.202676 GACTCGCGCAGGAGAAGG 60.203 66.667 17.68 0.00 37.49 3.46
38 39 2.676822 ACTCGCGCAGGAGAAGGA 60.677 61.111 17.68 0.00 37.49 3.36
39 40 2.214181 GACTCGCGCAGGAGAAGGAA 62.214 60.000 17.68 0.00 37.49 3.36
40 41 1.518133 CTCGCGCAGGAGAAGGAAG 60.518 63.158 8.75 0.00 36.08 3.46
41 42 3.191539 CGCGCAGGAGAAGGAAGC 61.192 66.667 8.75 0.00 0.00 3.86
42 43 2.267324 GCGCAGGAGAAGGAAGCT 59.733 61.111 0.30 0.00 0.00 3.74
43 44 2.105466 GCGCAGGAGAAGGAAGCTG 61.105 63.158 0.30 0.00 0.00 4.24
44 45 1.294780 CGCAGGAGAAGGAAGCTGT 59.705 57.895 0.00 0.00 0.00 4.40
45 46 0.739112 CGCAGGAGAAGGAAGCTGTC 60.739 60.000 0.00 0.00 0.00 3.51
46 47 0.612744 GCAGGAGAAGGAAGCTGTCT 59.387 55.000 0.00 0.00 0.00 3.41
47 48 1.675415 GCAGGAGAAGGAAGCTGTCTG 60.675 57.143 0.00 0.00 0.00 3.51
48 49 1.066286 CAGGAGAAGGAAGCTGTCTGG 60.066 57.143 0.00 0.00 0.00 3.86
49 50 0.980423 GGAGAAGGAAGCTGTCTGGT 59.020 55.000 0.00 0.00 0.00 4.00
50 51 1.338579 GGAGAAGGAAGCTGTCTGGTG 60.339 57.143 0.00 0.00 0.00 4.17
51 52 1.346068 GAGAAGGAAGCTGTCTGGTGT 59.654 52.381 0.00 0.00 0.00 4.16
52 53 1.346068 AGAAGGAAGCTGTCTGGTGTC 59.654 52.381 0.00 0.00 0.00 3.67
53 54 1.070758 GAAGGAAGCTGTCTGGTGTCA 59.929 52.381 0.00 0.00 0.00 3.58
54 55 1.356124 AGGAAGCTGTCTGGTGTCAT 58.644 50.000 0.00 0.00 0.00 3.06
55 56 1.002888 AGGAAGCTGTCTGGTGTCATG 59.997 52.381 0.00 0.00 0.00 3.07
56 57 1.446907 GAAGCTGTCTGGTGTCATGG 58.553 55.000 0.00 0.00 0.00 3.66
57 58 0.767375 AAGCTGTCTGGTGTCATGGT 59.233 50.000 0.00 0.00 0.00 3.55
58 59 0.035881 AGCTGTCTGGTGTCATGGTG 59.964 55.000 0.00 0.00 0.00 4.17
59 60 0.035317 GCTGTCTGGTGTCATGGTGA 59.965 55.000 0.00 0.00 0.00 4.02
69 70 0.447801 GTCATGGTGACGTTGATGGC 59.552 55.000 0.00 0.00 37.67 4.40
70 71 0.036022 TCATGGTGACGTTGATGGCA 59.964 50.000 0.00 0.00 0.00 4.92
71 72 0.880441 CATGGTGACGTTGATGGCAA 59.120 50.000 0.00 0.00 0.00 4.52
72 73 1.269174 CATGGTGACGTTGATGGCAAA 59.731 47.619 0.00 0.00 35.42 3.68
73 74 0.950836 TGGTGACGTTGATGGCAAAG 59.049 50.000 0.00 0.00 39.07 2.77
74 75 1.234821 GGTGACGTTGATGGCAAAGA 58.765 50.000 0.00 0.00 37.03 2.52
75 76 1.197721 GGTGACGTTGATGGCAAAGAG 59.802 52.381 0.00 0.00 37.03 2.85
76 77 1.197721 GTGACGTTGATGGCAAAGAGG 59.802 52.381 0.00 0.00 37.03 3.69
77 78 0.169009 GACGTTGATGGCAAAGAGGC 59.831 55.000 0.00 0.00 44.50 4.70
85 86 2.968206 GCAAAGAGGCCTGGCAAG 59.032 61.111 22.05 0.00 0.00 4.01
87 88 1.228675 CAAAGAGGCCTGGCAAGGT 60.229 57.895 22.05 0.91 46.43 3.50
94 95 4.335647 CCTGGCAAGGTCGGTGCT 62.336 66.667 0.00 0.00 41.88 4.40
95 96 2.281761 CTGGCAAGGTCGGTGCTT 60.282 61.111 0.00 0.00 41.88 3.91
96 97 2.281484 TGGCAAGGTCGGTGCTTC 60.281 61.111 0.00 0.00 41.88 3.86
97 98 2.281484 GGCAAGGTCGGTGCTTCA 60.281 61.111 0.00 0.00 41.88 3.02
98 99 2.328099 GGCAAGGTCGGTGCTTCAG 61.328 63.158 0.00 0.00 41.88 3.02
99 100 1.598130 GCAAGGTCGGTGCTTCAGT 60.598 57.895 0.00 0.00 39.00 3.41
100 101 1.166531 GCAAGGTCGGTGCTTCAGTT 61.167 55.000 0.00 0.00 39.00 3.16
101 102 0.868406 CAAGGTCGGTGCTTCAGTTC 59.132 55.000 0.00 0.00 0.00 3.01
102 103 0.759346 AAGGTCGGTGCTTCAGTTCT 59.241 50.000 0.00 0.00 0.00 3.01
103 104 0.034059 AGGTCGGTGCTTCAGTTCTG 59.966 55.000 0.00 0.00 0.00 3.02
104 105 1.569479 GGTCGGTGCTTCAGTTCTGC 61.569 60.000 0.00 0.00 0.00 4.26
105 106 0.601311 GTCGGTGCTTCAGTTCTGCT 60.601 55.000 0.00 0.00 0.00 4.24
106 107 0.319900 TCGGTGCTTCAGTTCTGCTC 60.320 55.000 0.00 0.00 0.00 4.26
107 108 0.320247 CGGTGCTTCAGTTCTGCTCT 60.320 55.000 0.00 0.00 0.00 4.09
108 109 1.155042 GGTGCTTCAGTTCTGCTCTG 58.845 55.000 0.00 0.00 0.00 3.35
109 110 1.270518 GGTGCTTCAGTTCTGCTCTGA 60.271 52.381 0.00 0.00 39.71 3.27
110 111 2.067766 GTGCTTCAGTTCTGCTCTGAG 58.932 52.381 0.00 0.00 41.87 3.35
111 112 1.001746 TGCTTCAGTTCTGCTCTGAGG 59.998 52.381 6.83 0.00 41.87 3.86
112 113 1.274728 GCTTCAGTTCTGCTCTGAGGA 59.725 52.381 6.83 2.22 41.87 3.71
113 114 2.093553 GCTTCAGTTCTGCTCTGAGGAT 60.094 50.000 6.83 0.00 41.87 3.24
114 115 3.523547 CTTCAGTTCTGCTCTGAGGATG 58.476 50.000 6.83 0.00 41.87 3.51
115 116 1.829849 TCAGTTCTGCTCTGAGGATGG 59.170 52.381 6.83 0.00 37.07 3.51
116 117 1.829849 CAGTTCTGCTCTGAGGATGGA 59.170 52.381 6.83 0.00 35.20 3.41
117 118 1.830477 AGTTCTGCTCTGAGGATGGAC 59.170 52.381 6.83 3.28 0.00 4.02
118 119 1.134551 GTTCTGCTCTGAGGATGGACC 60.135 57.143 6.83 0.00 39.35 4.46
119 120 1.039785 TCTGCTCTGAGGATGGACCG 61.040 60.000 6.83 0.00 44.74 4.79
120 121 1.000359 TGCTCTGAGGATGGACCGA 60.000 57.895 6.83 0.00 44.74 4.69
121 122 1.039785 TGCTCTGAGGATGGACCGAG 61.040 60.000 6.83 0.00 44.74 4.63
122 123 0.753479 GCTCTGAGGATGGACCGAGA 60.753 60.000 6.83 0.00 44.74 4.04
123 124 1.317613 CTCTGAGGATGGACCGAGAG 58.682 60.000 0.00 0.00 44.74 3.20
124 125 0.919710 TCTGAGGATGGACCGAGAGA 59.080 55.000 0.00 0.00 44.74 3.10
125 126 1.496857 TCTGAGGATGGACCGAGAGAT 59.503 52.381 0.00 0.00 44.74 2.75
126 127 1.612950 CTGAGGATGGACCGAGAGATG 59.387 57.143 0.00 0.00 44.74 2.90
127 128 1.215423 TGAGGATGGACCGAGAGATGA 59.785 52.381 0.00 0.00 44.74 2.92
128 129 2.158400 TGAGGATGGACCGAGAGATGAT 60.158 50.000 0.00 0.00 44.74 2.45
129 130 2.230992 GAGGATGGACCGAGAGATGATG 59.769 54.545 0.00 0.00 44.74 3.07
130 131 1.274728 GGATGGACCGAGAGATGATGG 59.725 57.143 0.00 0.00 0.00 3.51
131 132 2.242926 GATGGACCGAGAGATGATGGA 58.757 52.381 0.00 0.00 0.00 3.41
132 133 1.697284 TGGACCGAGAGATGATGGAG 58.303 55.000 0.00 0.00 0.00 3.86
133 134 0.965439 GGACCGAGAGATGATGGAGG 59.035 60.000 0.00 0.00 0.00 4.30
134 135 1.698506 GACCGAGAGATGATGGAGGT 58.301 55.000 0.00 0.00 0.00 3.85
135 136 1.339610 GACCGAGAGATGATGGAGGTG 59.660 57.143 0.00 0.00 0.00 4.00
136 137 1.063642 ACCGAGAGATGATGGAGGTGA 60.064 52.381 0.00 0.00 0.00 4.02
137 138 1.339610 CCGAGAGATGATGGAGGTGAC 59.660 57.143 0.00 0.00 0.00 3.67
138 139 1.001924 CGAGAGATGATGGAGGTGACG 60.002 57.143 0.00 0.00 0.00 4.35
139 140 1.339610 GAGAGATGATGGAGGTGACGG 59.660 57.143 0.00 0.00 0.00 4.79
140 141 0.249657 GAGATGATGGAGGTGACGGC 60.250 60.000 0.00 0.00 0.00 5.68
141 142 1.227674 GATGATGGAGGTGACGGCC 60.228 63.158 0.00 0.00 0.00 6.13
142 143 2.666596 GATGATGGAGGTGACGGCCC 62.667 65.000 0.00 0.00 0.00 5.80
143 144 3.083997 GATGGAGGTGACGGCCCT 61.084 66.667 0.00 0.00 34.11 5.19
144 145 2.610859 ATGGAGGTGACGGCCCTT 60.611 61.111 0.00 0.00 30.60 3.95
145 146 2.876368 GATGGAGGTGACGGCCCTTG 62.876 65.000 0.00 0.00 30.60 3.61
146 147 3.637273 GGAGGTGACGGCCCTTGT 61.637 66.667 0.00 0.00 30.60 3.16
147 148 2.288025 GGAGGTGACGGCCCTTGTA 61.288 63.158 0.00 0.00 30.60 2.41
148 149 1.218316 GAGGTGACGGCCCTTGTAG 59.782 63.158 0.00 0.00 30.60 2.74
149 150 2.436115 GGTGACGGCCCTTGTAGC 60.436 66.667 0.00 0.00 0.00 3.58
150 151 2.813908 GTGACGGCCCTTGTAGCG 60.814 66.667 0.00 0.00 0.00 4.26
151 152 3.307906 TGACGGCCCTTGTAGCGT 61.308 61.111 0.00 0.00 0.00 5.07
152 153 2.813908 GACGGCCCTTGTAGCGTG 60.814 66.667 0.00 0.00 0.00 5.34
157 158 3.118454 CCCTTGTAGCGTGCGGTG 61.118 66.667 6.55 0.00 0.00 4.94
158 159 3.788766 CCTTGTAGCGTGCGGTGC 61.789 66.667 6.55 5.75 0.00 5.01
159 160 2.738521 CTTGTAGCGTGCGGTGCT 60.739 61.111 12.34 2.64 46.29 4.40
160 161 2.730672 CTTGTAGCGTGCGGTGCTC 61.731 63.158 12.34 2.13 42.85 4.26
161 162 3.507597 TTGTAGCGTGCGGTGCTCA 62.508 57.895 12.34 4.35 42.85 4.26
162 163 3.479269 GTAGCGTGCGGTGCTCAC 61.479 66.667 6.55 0.00 42.85 3.51
163 164 3.680786 TAGCGTGCGGTGCTCACT 61.681 61.111 6.55 0.00 42.85 3.41
164 165 3.626680 TAGCGTGCGGTGCTCACTC 62.627 63.158 6.55 0.00 42.85 3.51
167 168 4.357947 GTGCGGTGCTCACTCGGA 62.358 66.667 10.97 6.90 0.00 4.55
168 169 4.056125 TGCGGTGCTCACTCGGAG 62.056 66.667 2.83 2.83 46.93 4.63
169 170 4.057428 GCGGTGCTCACTCGGAGT 62.057 66.667 4.45 4.45 45.88 3.85
171 172 2.920645 CGGTGCTCACTCGGAGTGT 61.921 63.158 31.09 0.91 46.03 3.55
177 178 3.051210 CACTCGGAGTGTGCCAGA 58.949 61.111 26.22 0.00 44.96 3.86
178 179 1.593787 CACTCGGAGTGTGCCAGAT 59.406 57.895 26.22 0.00 44.96 2.90
179 180 0.459237 CACTCGGAGTGTGCCAGATC 60.459 60.000 26.22 0.00 44.96 2.75
180 181 1.226802 CTCGGAGTGTGCCAGATCG 60.227 63.158 0.00 0.00 0.00 3.69
181 182 2.202797 CGGAGTGTGCCAGATCGG 60.203 66.667 0.00 0.00 38.11 4.18
182 183 2.982130 GGAGTGTGCCAGATCGGT 59.018 61.111 5.66 0.00 36.97 4.69
183 184 1.448540 GGAGTGTGCCAGATCGGTG 60.449 63.158 5.66 0.00 36.97 4.94
184 185 1.293498 GAGTGTGCCAGATCGGTGT 59.707 57.895 5.66 0.00 36.97 4.16
185 186 1.004560 AGTGTGCCAGATCGGTGTG 60.005 57.895 5.66 0.00 36.97 3.82
186 187 1.005037 GTGTGCCAGATCGGTGTGA 60.005 57.895 0.00 0.00 36.97 3.58
187 188 1.016130 GTGTGCCAGATCGGTGTGAG 61.016 60.000 0.00 0.00 36.97 3.51
188 189 1.184970 TGTGCCAGATCGGTGTGAGA 61.185 55.000 0.00 0.00 36.97 3.27
189 190 0.737715 GTGCCAGATCGGTGTGAGAC 60.738 60.000 0.00 0.00 36.97 3.36
190 191 1.153549 GCCAGATCGGTGTGAGACC 60.154 63.158 0.00 0.00 42.07 3.85
191 192 1.517832 CCAGATCGGTGTGAGACCC 59.482 63.158 0.00 0.00 42.62 4.46
192 193 1.257750 CCAGATCGGTGTGAGACCCA 61.258 60.000 0.00 0.00 42.62 4.51
193 194 0.608130 CAGATCGGTGTGAGACCCAA 59.392 55.000 0.00 0.00 42.62 4.12
194 195 1.208052 CAGATCGGTGTGAGACCCAAT 59.792 52.381 0.00 0.00 42.62 3.16
195 196 1.482593 AGATCGGTGTGAGACCCAATC 59.517 52.381 0.00 0.00 42.62 2.67
196 197 0.541863 ATCGGTGTGAGACCCAATCC 59.458 55.000 0.00 0.00 42.62 3.01
197 198 0.834261 TCGGTGTGAGACCCAATCCA 60.834 55.000 0.00 0.00 42.62 3.41
198 199 0.673644 CGGTGTGAGACCCAATCCAC 60.674 60.000 0.00 0.00 42.62 4.02
199 200 0.673644 GGTGTGAGACCCAATCCACG 60.674 60.000 0.00 0.00 39.10 4.94
200 201 0.034896 GTGTGAGACCCAATCCACGT 59.965 55.000 0.00 0.00 33.52 4.49
201 202 1.274167 GTGTGAGACCCAATCCACGTA 59.726 52.381 0.00 0.00 33.52 3.57
202 203 1.548719 TGTGAGACCCAATCCACGTAG 59.451 52.381 0.00 0.00 33.52 3.51
215 216 1.602237 ACGTAGTGGCTTGGATGGG 59.398 57.895 0.00 0.00 42.51 4.00
216 217 0.907704 ACGTAGTGGCTTGGATGGGA 60.908 55.000 0.00 0.00 42.51 4.37
217 218 0.462047 CGTAGTGGCTTGGATGGGAC 60.462 60.000 0.00 0.00 0.00 4.46
230 231 4.826248 GGGACACCCGGCTTTAAA 57.174 55.556 0.00 0.00 32.13 1.52
231 232 3.276281 GGGACACCCGGCTTTAAAT 57.724 52.632 0.00 0.00 32.13 1.40
232 233 0.815095 GGGACACCCGGCTTTAAATG 59.185 55.000 0.00 0.00 32.13 2.32
233 234 1.541379 GGACACCCGGCTTTAAATGT 58.459 50.000 0.00 0.00 0.00 2.71
234 235 1.890489 GGACACCCGGCTTTAAATGTT 59.110 47.619 0.00 0.00 0.00 2.71
235 236 3.083293 GGACACCCGGCTTTAAATGTTA 58.917 45.455 0.00 0.00 0.00 2.41
236 237 3.128068 GGACACCCGGCTTTAAATGTTAG 59.872 47.826 0.00 0.00 0.00 2.34
237 238 3.086282 ACACCCGGCTTTAAATGTTAGG 58.914 45.455 0.00 0.00 0.00 2.69
238 239 2.097036 ACCCGGCTTTAAATGTTAGGC 58.903 47.619 0.00 0.00 0.00 3.93
239 240 2.291346 ACCCGGCTTTAAATGTTAGGCT 60.291 45.455 0.00 0.00 32.77 4.58
240 241 2.758423 CCCGGCTTTAAATGTTAGGCTT 59.242 45.455 0.00 0.00 32.77 4.35
241 242 3.194755 CCCGGCTTTAAATGTTAGGCTTT 59.805 43.478 0.00 0.00 32.77 3.51
242 243 4.173256 CCGGCTTTAAATGTTAGGCTTTG 58.827 43.478 0.00 0.00 32.77 2.77
243 244 4.173256 CGGCTTTAAATGTTAGGCTTTGG 58.827 43.478 0.00 0.00 32.77 3.28
244 245 4.321675 CGGCTTTAAATGTTAGGCTTTGGT 60.322 41.667 0.00 0.00 32.77 3.67
245 246 5.106078 CGGCTTTAAATGTTAGGCTTTGGTA 60.106 40.000 0.00 0.00 32.77 3.25
246 247 6.097356 GGCTTTAAATGTTAGGCTTTGGTAC 58.903 40.000 0.00 0.00 0.00 3.34
247 248 6.071560 GGCTTTAAATGTTAGGCTTTGGTACT 60.072 38.462 0.00 0.00 0.00 2.73
248 249 7.121611 GGCTTTAAATGTTAGGCTTTGGTACTA 59.878 37.037 0.00 0.00 0.00 1.82
249 250 8.683615 GCTTTAAATGTTAGGCTTTGGTACTAT 58.316 33.333 0.00 0.00 0.00 2.12
270 271 1.675552 CCTGTTTGGTATTAGGCCCG 58.324 55.000 0.00 0.00 0.00 6.13
271 272 1.675552 CTGTTTGGTATTAGGCCCGG 58.324 55.000 0.00 0.00 0.00 5.73
272 273 1.210967 CTGTTTGGTATTAGGCCCGGA 59.789 52.381 0.73 0.00 0.00 5.14
273 274 1.065272 TGTTTGGTATTAGGCCCGGAC 60.065 52.381 0.73 0.00 0.00 4.79
274 275 1.065272 GTTTGGTATTAGGCCCGGACA 60.065 52.381 0.73 0.00 0.00 4.02
275 276 1.513858 TTGGTATTAGGCCCGGACAT 58.486 50.000 0.73 0.00 0.00 3.06
276 277 1.513858 TGGTATTAGGCCCGGACATT 58.486 50.000 0.73 0.00 0.00 2.71
277 278 1.418637 TGGTATTAGGCCCGGACATTC 59.581 52.381 0.73 0.00 0.00 2.67
278 279 1.418637 GGTATTAGGCCCGGACATTCA 59.581 52.381 0.73 0.00 0.00 2.57
279 280 2.550208 GGTATTAGGCCCGGACATTCAG 60.550 54.545 0.73 0.00 0.00 3.02
280 281 0.179018 ATTAGGCCCGGACATTCAGC 60.179 55.000 0.73 0.00 0.00 4.26
281 282 1.558167 TTAGGCCCGGACATTCAGCA 61.558 55.000 0.73 0.00 0.00 4.41
282 283 2.252072 TAGGCCCGGACATTCAGCAC 62.252 60.000 0.73 0.00 0.00 4.40
283 284 3.499737 GCCCGGACATTCAGCACG 61.500 66.667 0.73 0.00 0.00 5.34
284 285 3.499737 CCCGGACATTCAGCACGC 61.500 66.667 0.73 0.00 0.00 5.34
285 286 3.499737 CCGGACATTCAGCACGCC 61.500 66.667 0.00 0.00 0.00 5.68
286 287 2.434884 CGGACATTCAGCACGCCT 60.435 61.111 0.00 0.00 0.00 5.52
287 288 2.034879 CGGACATTCAGCACGCCTT 61.035 57.895 0.00 0.00 0.00 4.35
288 289 1.796796 GGACATTCAGCACGCCTTC 59.203 57.895 0.00 0.00 0.00 3.46
289 290 0.955428 GGACATTCAGCACGCCTTCA 60.955 55.000 0.00 0.00 0.00 3.02
290 291 1.089920 GACATTCAGCACGCCTTCAT 58.910 50.000 0.00 0.00 0.00 2.57
291 292 2.279741 GACATTCAGCACGCCTTCATA 58.720 47.619 0.00 0.00 0.00 2.15
292 293 2.677836 GACATTCAGCACGCCTTCATAA 59.322 45.455 0.00 0.00 0.00 1.90
293 294 3.081061 ACATTCAGCACGCCTTCATAAA 58.919 40.909 0.00 0.00 0.00 1.40
294 295 3.127548 ACATTCAGCACGCCTTCATAAAG 59.872 43.478 0.00 0.00 0.00 1.85
309 310 7.009179 CTTCATAAAGGGGATATGAGTAGCA 57.991 40.000 0.00 0.00 40.01 3.49
310 311 7.387265 TTCATAAAGGGGATATGAGTAGCAA 57.613 36.000 0.00 0.00 40.01 3.91
311 312 6.769512 TCATAAAGGGGATATGAGTAGCAAC 58.230 40.000 0.00 0.00 35.42 4.17
312 313 3.753294 AAGGGGATATGAGTAGCAACG 57.247 47.619 0.00 0.00 0.00 4.10
313 314 1.971357 AGGGGATATGAGTAGCAACGG 59.029 52.381 0.00 0.00 0.00 4.44
314 315 1.692519 GGGGATATGAGTAGCAACGGT 59.307 52.381 0.00 0.00 0.00 4.83
315 316 2.548067 GGGGATATGAGTAGCAACGGTG 60.548 54.545 0.00 0.00 0.00 4.94
316 317 2.102588 GGGATATGAGTAGCAACGGTGT 59.897 50.000 0.66 0.00 0.00 4.16
317 318 3.431766 GGGATATGAGTAGCAACGGTGTT 60.432 47.826 0.66 0.00 0.00 3.32
318 319 3.555956 GGATATGAGTAGCAACGGTGTTG 59.444 47.826 0.66 5.34 0.00 3.33
319 320 2.543777 ATGAGTAGCAACGGTGTTGT 57.456 45.000 0.66 0.00 0.00 3.32
320 321 1.860676 TGAGTAGCAACGGTGTTGTC 58.139 50.000 0.66 0.00 0.00 3.18
321 322 1.137282 TGAGTAGCAACGGTGTTGTCA 59.863 47.619 0.66 0.78 0.00 3.58
322 323 2.206750 GAGTAGCAACGGTGTTGTCAA 58.793 47.619 0.66 0.00 0.00 3.18
323 324 2.210116 AGTAGCAACGGTGTTGTCAAG 58.790 47.619 0.66 0.00 0.00 3.02
324 325 2.159014 AGTAGCAACGGTGTTGTCAAGA 60.159 45.455 0.66 0.00 0.00 3.02
325 326 1.967319 AGCAACGGTGTTGTCAAGAT 58.033 45.000 0.66 0.00 0.00 2.40
326 327 1.603802 AGCAACGGTGTTGTCAAGATG 59.396 47.619 0.66 0.00 0.00 2.90
327 328 1.334960 GCAACGGTGTTGTCAAGATGG 60.335 52.381 0.66 0.00 0.00 3.51
328 329 1.946768 CAACGGTGTTGTCAAGATGGT 59.053 47.619 0.00 0.00 0.00 3.55
329 330 1.593196 ACGGTGTTGTCAAGATGGTG 58.407 50.000 0.00 0.00 0.00 4.17
330 331 0.874390 CGGTGTTGTCAAGATGGTGG 59.126 55.000 0.00 0.00 0.00 4.61
331 332 0.598065 GGTGTTGTCAAGATGGTGGC 59.402 55.000 0.00 0.00 0.00 5.01
332 333 1.609208 GTGTTGTCAAGATGGTGGCT 58.391 50.000 0.00 0.00 0.00 4.75
333 334 1.956477 GTGTTGTCAAGATGGTGGCTT 59.044 47.619 0.00 0.00 0.00 4.35
334 335 2.030805 GTGTTGTCAAGATGGTGGCTTC 60.031 50.000 0.00 0.00 0.00 3.86
335 336 2.229792 GTTGTCAAGATGGTGGCTTCA 58.770 47.619 0.00 0.00 0.00 3.02
336 337 2.189594 TGTCAAGATGGTGGCTTCAG 57.810 50.000 0.00 0.00 0.00 3.02
337 338 1.699083 TGTCAAGATGGTGGCTTCAGA 59.301 47.619 0.00 0.00 0.00 3.27
338 339 2.079925 GTCAAGATGGTGGCTTCAGAC 58.920 52.381 0.00 0.00 0.00 3.51
339 340 1.980765 TCAAGATGGTGGCTTCAGACT 59.019 47.619 0.00 0.00 0.00 3.24
340 341 2.373169 TCAAGATGGTGGCTTCAGACTT 59.627 45.455 0.00 0.00 0.00 3.01
341 342 3.582647 TCAAGATGGTGGCTTCAGACTTA 59.417 43.478 0.00 0.00 0.00 2.24
342 343 4.225942 TCAAGATGGTGGCTTCAGACTTAT 59.774 41.667 0.00 0.00 0.00 1.73
343 344 4.851639 AGATGGTGGCTTCAGACTTATT 57.148 40.909 0.00 0.00 0.00 1.40
344 345 5.957771 AGATGGTGGCTTCAGACTTATTA 57.042 39.130 0.00 0.00 0.00 0.98
345 346 6.313519 AGATGGTGGCTTCAGACTTATTAA 57.686 37.500 0.00 0.00 0.00 1.40
346 347 6.904626 AGATGGTGGCTTCAGACTTATTAAT 58.095 36.000 0.00 0.00 0.00 1.40
347 348 6.769822 AGATGGTGGCTTCAGACTTATTAATG 59.230 38.462 0.00 0.00 0.00 1.90
348 349 5.815581 TGGTGGCTTCAGACTTATTAATGT 58.184 37.500 0.00 0.00 0.00 2.71
349 350 6.953101 TGGTGGCTTCAGACTTATTAATGTA 58.047 36.000 0.00 0.00 0.00 2.29
350 351 7.573710 TGGTGGCTTCAGACTTATTAATGTAT 58.426 34.615 0.00 0.00 0.00 2.29
351 352 7.715249 TGGTGGCTTCAGACTTATTAATGTATC 59.285 37.037 0.00 0.00 0.00 2.24
352 353 7.715249 GGTGGCTTCAGACTTATTAATGTATCA 59.285 37.037 0.00 0.00 0.00 2.15
353 354 8.552034 GTGGCTTCAGACTTATTAATGTATCAC 58.448 37.037 0.00 0.00 0.00 3.06
354 355 7.715249 TGGCTTCAGACTTATTAATGTATCACC 59.285 37.037 0.00 0.00 0.00 4.02
355 356 7.934120 GGCTTCAGACTTATTAATGTATCACCT 59.066 37.037 0.00 0.00 0.00 4.00
356 357 9.331282 GCTTCAGACTTATTAATGTATCACCTT 57.669 33.333 0.00 0.00 0.00 3.50
391 392 7.962964 TGTGAATAATTACTAGTATGGCTGC 57.037 36.000 2.79 0.00 0.00 5.25
392 393 7.505258 TGTGAATAATTACTAGTATGGCTGCA 58.495 34.615 2.79 0.00 0.00 4.41
393 394 8.156820 TGTGAATAATTACTAGTATGGCTGCAT 58.843 33.333 2.79 0.00 0.00 3.96
394 395 8.446273 GTGAATAATTACTAGTATGGCTGCATG 58.554 37.037 2.79 0.00 0.00 4.06
395 396 6.992063 ATAATTACTAGTATGGCTGCATGC 57.008 37.500 11.82 11.82 41.94 4.06
396 397 3.836365 TTACTAGTATGGCTGCATGCA 57.164 42.857 21.29 21.29 45.15 3.96
397 398 2.945080 ACTAGTATGGCTGCATGCAT 57.055 45.000 22.97 9.00 45.15 3.96
398 399 2.775890 ACTAGTATGGCTGCATGCATC 58.224 47.619 22.97 17.75 45.15 3.91
399 400 1.730612 CTAGTATGGCTGCATGCATCG 59.269 52.381 22.97 12.00 45.15 3.84
400 401 0.179037 AGTATGGCTGCATGCATCGT 60.179 50.000 22.97 19.00 45.15 3.73
401 402 0.236711 GTATGGCTGCATGCATCGTC 59.763 55.000 22.97 13.00 45.15 4.20
402 403 0.886043 TATGGCTGCATGCATCGTCC 60.886 55.000 22.97 19.03 45.15 4.79
403 404 2.825387 GGCTGCATGCATCGTCCA 60.825 61.111 22.97 0.00 45.15 4.02
404 405 2.713770 GCTGCATGCATCGTCCAG 59.286 61.111 22.97 8.76 42.31 3.86
405 406 1.816679 GCTGCATGCATCGTCCAGA 60.817 57.895 22.97 0.00 42.31 3.86
406 407 1.164662 GCTGCATGCATCGTCCAGAT 61.165 55.000 22.97 0.00 42.31 2.90
415 416 0.749649 ATCGTCCAGATGCAGAGACC 59.250 55.000 0.00 0.00 38.36 3.85
416 417 1.226802 CGTCCAGATGCAGAGACCG 60.227 63.158 0.00 0.00 0.00 4.79
417 418 1.142748 GTCCAGATGCAGAGACCGG 59.857 63.158 0.00 0.00 0.00 5.28
418 419 1.000359 TCCAGATGCAGAGACCGGA 60.000 57.895 9.46 0.00 0.00 5.14
419 420 1.039785 TCCAGATGCAGAGACCGGAG 61.040 60.000 9.46 0.00 0.00 4.63
420 421 1.326213 CCAGATGCAGAGACCGGAGT 61.326 60.000 9.46 0.00 0.00 3.85
421 422 1.393603 CAGATGCAGAGACCGGAGTA 58.606 55.000 9.46 0.00 0.00 2.59
422 423 1.066303 CAGATGCAGAGACCGGAGTAC 59.934 57.143 9.46 0.00 0.00 2.73
423 424 1.103803 GATGCAGAGACCGGAGTACA 58.896 55.000 9.46 0.00 0.00 2.90
424 425 1.683917 GATGCAGAGACCGGAGTACAT 59.316 52.381 9.46 3.59 0.00 2.29
425 426 1.103803 TGCAGAGACCGGAGTACATC 58.896 55.000 9.46 0.00 0.00 3.06
426 427 0.386113 GCAGAGACCGGAGTACATCC 59.614 60.000 9.46 0.00 45.64 3.51
493 494 6.480524 TGAATGACTTGTTTAGATTCGTGG 57.519 37.500 0.00 0.00 0.00 4.94
501 502 9.543018 GACTTGTTTAGATTCGTGGAAATAAAG 57.457 33.333 0.00 0.00 0.00 1.85
508 509 3.546002 TCGTGGAAATAAAGCGGTTTG 57.454 42.857 22.16 3.30 0.00 2.93
642 644 2.046217 GGACCGGGAGCAAGTTCC 60.046 66.667 6.32 0.00 36.46 3.62
660 662 2.484062 CGCTGGTGATGATTGGGCC 61.484 63.158 0.00 0.00 0.00 5.80
743 745 2.213499 CCAATAGTTGGTGCTCGATCC 58.787 52.381 0.54 0.00 45.93 3.36
744 746 2.419990 CCAATAGTTGGTGCTCGATCCA 60.420 50.000 0.54 0.00 45.93 3.41
745 747 3.470709 CAATAGTTGGTGCTCGATCCAT 58.529 45.455 5.25 0.00 33.50 3.41
746 748 4.503123 CCAATAGTTGGTGCTCGATCCATA 60.503 45.833 0.54 0.00 45.93 2.74
747 749 2.604046 AGTTGGTGCTCGATCCATAC 57.396 50.000 5.25 6.74 33.50 2.39
748 750 1.139058 AGTTGGTGCTCGATCCATACC 59.861 52.381 5.25 0.00 33.50 2.73
749 751 1.134521 GTTGGTGCTCGATCCATACCA 60.135 52.381 5.25 0.00 39.49 3.25
750 752 1.423584 TGGTGCTCGATCCATACCAT 58.576 50.000 0.00 0.00 36.56 3.55
751 753 2.604139 TGGTGCTCGATCCATACCATA 58.396 47.619 0.00 0.00 36.56 2.74
871 1165 2.284625 ATCCTCACTCCGCCCACA 60.285 61.111 0.00 0.00 0.00 4.17
920 1214 1.450312 CTCCCTCACAATCCACGGC 60.450 63.158 0.00 0.00 0.00 5.68
987 1281 2.105128 GCAGGGACGACAGATCCG 59.895 66.667 0.00 0.00 37.08 4.18
1010 1304 5.511031 CGACAAGGAGATCAATGGAGATGAT 60.511 44.000 0.00 0.00 40.14 2.45
1035 1329 3.775654 GGGAGGGACACCGAGCAG 61.776 72.222 0.00 0.00 41.07 4.24
1613 1913 4.100498 TCCTATATTCACCGTCTTCCAACC 59.900 45.833 0.00 0.00 0.00 3.77
1674 1974 5.376625 TCCCAATATTTCTTCTTCCATCCG 58.623 41.667 0.00 0.00 0.00 4.18
1677 1977 6.058183 CCAATATTTCTTCTTCCATCCGTCT 58.942 40.000 0.00 0.00 0.00 4.18
1678 1978 7.217200 CCAATATTTCTTCTTCCATCCGTCTA 58.783 38.462 0.00 0.00 0.00 2.59
1685 1989 5.880332 TCTTCTTCCATCCGTCTAAATTTGG 59.120 40.000 0.00 0.00 0.00 3.28
1686 1990 4.523083 TCTTCCATCCGTCTAAATTTGGG 58.477 43.478 0.00 0.00 0.00 4.12
1687 1991 4.226394 TCTTCCATCCGTCTAAATTTGGGA 59.774 41.667 0.00 3.00 0.00 4.37
1688 1992 4.788925 TCCATCCGTCTAAATTTGGGAT 57.211 40.909 0.00 5.19 37.99 3.85
1715 2019 0.166814 GTGCGTTGATGGAGCAGAAC 59.833 55.000 0.00 0.00 41.93 3.01
2131 2435 5.530171 CCCAGAGGTCATGATGAACTAATTG 59.470 44.000 13.82 11.73 45.99 2.32
2147 2466 3.581024 AATTGGTGTGTCATGTCATGC 57.419 42.857 8.03 4.35 0.00 4.06
2160 2479 2.412870 TGTCATGCGTTAGTGAGTTGG 58.587 47.619 0.00 0.00 0.00 3.77
2232 2559 5.478679 ACAGGCATAGTAACTAGGATAGCTG 59.521 44.000 0.00 0.00 44.39 4.24
2243 2574 1.686052 AGGATAGCTGGCGAAAGAGAG 59.314 52.381 0.00 0.00 0.00 3.20
2244 2575 1.270041 GGATAGCTGGCGAAAGAGAGG 60.270 57.143 0.00 0.00 0.00 3.69
2245 2576 1.683917 GATAGCTGGCGAAAGAGAGGA 59.316 52.381 0.00 0.00 0.00 3.71
2339 2673 3.840468 ACTTTTGGTGTTCCGTTTGTTC 58.160 40.909 0.00 0.00 36.30 3.18
2391 2729 6.010219 AGTGATGCAATGGGTTTTAGTACTT 58.990 36.000 0.00 0.00 0.00 2.24
2392 2730 6.071952 AGTGATGCAATGGGTTTTAGTACTTG 60.072 38.462 0.00 0.00 0.00 3.16
2394 2732 5.446143 TGCAATGGGTTTTAGTACTTGTG 57.554 39.130 0.00 0.00 0.00 3.33
2396 2734 4.261825 GCAATGGGTTTTAGTACTTGTGCA 60.262 41.667 0.00 0.00 0.00 4.57
2397 2735 5.566627 GCAATGGGTTTTAGTACTTGTGCAT 60.567 40.000 0.00 0.00 0.00 3.96
2398 2736 6.349777 GCAATGGGTTTTAGTACTTGTGCATA 60.350 38.462 0.00 0.00 0.00 3.14
2399 2737 6.753107 ATGGGTTTTAGTACTTGTGCATAC 57.247 37.500 0.00 0.00 0.00 2.39
2400 2738 5.622180 TGGGTTTTAGTACTTGTGCATACA 58.378 37.500 0.00 0.00 34.31 2.29
2478 2874 6.680810 TCAATGGCTGATCTGTTTTGTTTAG 58.319 36.000 1.27 0.00 0.00 1.85
2480 2876 5.689383 TGGCTGATCTGTTTTGTTTAGAC 57.311 39.130 1.27 0.00 0.00 2.59
2482 2878 4.151798 GCTGATCTGTTTTGTTTAGACGC 58.848 43.478 1.27 0.00 0.00 5.19
2483 2879 4.319477 GCTGATCTGTTTTGTTTAGACGCA 60.319 41.667 1.27 0.00 0.00 5.24
2488 2884 4.154375 TCTGTTTTGTTTAGACGCAACACA 59.846 37.500 0.00 0.00 33.81 3.72
2489 2885 4.407818 TGTTTTGTTTAGACGCAACACAG 58.592 39.130 0.00 0.00 33.81 3.66
2490 2886 4.083217 TGTTTTGTTTAGACGCAACACAGT 60.083 37.500 0.00 0.00 33.81 3.55
2491 2887 5.121925 TGTTTTGTTTAGACGCAACACAGTA 59.878 36.000 0.00 0.00 33.81 2.74
2492 2888 5.994887 TTTGTTTAGACGCAACACAGTAT 57.005 34.783 0.00 0.00 33.81 2.12
2493 2889 4.983215 TGTTTAGACGCAACACAGTATG 57.017 40.909 0.00 0.00 46.00 2.39
2507 2903 3.651803 CAGTATGTTTCCCCGCAAAAA 57.348 42.857 0.00 0.00 0.00 1.94
2527 2923 3.717400 AAAAACACACACACACACACA 57.283 38.095 0.00 0.00 0.00 3.72
2528 2924 2.697431 AAACACACACACACACACAC 57.303 45.000 0.00 0.00 0.00 3.82
2529 2925 1.598882 AACACACACACACACACACA 58.401 45.000 0.00 0.00 0.00 3.72
2530 2926 1.598882 ACACACACACACACACACAA 58.401 45.000 0.00 0.00 0.00 3.33
2531 2927 2.158559 ACACACACACACACACACAAT 58.841 42.857 0.00 0.00 0.00 2.71
2532 2928 3.339141 ACACACACACACACACACAATA 58.661 40.909 0.00 0.00 0.00 1.90
2555 2951 2.163818 TCAACTGTGGAAGCTTACCG 57.836 50.000 6.13 0.00 0.00 4.02
2575 2971 0.105039 CCCCCGTAATGCAGAGAGTC 59.895 60.000 0.00 0.00 0.00 3.36
2578 2974 1.115467 CCGTAATGCAGAGAGTCCCT 58.885 55.000 0.00 0.00 0.00 4.20
2579 2975 1.482593 CCGTAATGCAGAGAGTCCCTT 59.517 52.381 0.00 0.00 0.00 3.95
2580 2976 2.482142 CCGTAATGCAGAGAGTCCCTTC 60.482 54.545 0.00 0.00 0.00 3.46
2581 2977 2.482142 CGTAATGCAGAGAGTCCCTTCC 60.482 54.545 0.00 0.00 0.00 3.46
2582 2978 1.963985 AATGCAGAGAGTCCCTTCCT 58.036 50.000 0.00 0.00 0.00 3.36
2583 2979 1.202330 ATGCAGAGAGTCCCTTCCTG 58.798 55.000 0.00 0.00 0.00 3.86
2589 2985 1.552792 GAGAGTCCCTTCCTGTTCCTG 59.447 57.143 0.00 0.00 0.00 3.86
2594 2990 1.132657 TCCCTTCCTGTTCCTGTGGTA 60.133 52.381 0.00 0.00 0.00 3.25
2609 3005 5.647658 TCCTGTGGTAAGATATTTTGCTGTG 59.352 40.000 0.00 0.00 0.00 3.66
2665 3063 2.686405 GCATGATGCATGGAGAGTTGAA 59.314 45.455 13.36 0.00 44.26 2.69
2666 3064 3.318275 GCATGATGCATGGAGAGTTGAAT 59.682 43.478 13.36 0.00 44.26 2.57
2667 3065 4.202121 GCATGATGCATGGAGAGTTGAATT 60.202 41.667 13.36 0.00 44.26 2.17
2668 3066 4.976224 TGATGCATGGAGAGTTGAATTG 57.024 40.909 2.46 0.00 0.00 2.32
2669 3067 4.591929 TGATGCATGGAGAGTTGAATTGA 58.408 39.130 2.46 0.00 0.00 2.57
2670 3068 5.011586 TGATGCATGGAGAGTTGAATTGAA 58.988 37.500 2.46 0.00 0.00 2.69
2671 3069 5.655090 TGATGCATGGAGAGTTGAATTGAAT 59.345 36.000 2.46 0.00 0.00 2.57
2672 3070 5.571784 TGCATGGAGAGTTGAATTGAATC 57.428 39.130 0.00 0.00 0.00 2.52
2673 3071 4.400251 TGCATGGAGAGTTGAATTGAATCC 59.600 41.667 0.00 0.00 0.00 3.01
2709 3107 7.910441 AAATGTTCCATTTTCCTTTGCTATG 57.090 32.000 0.00 0.00 0.00 2.23
2710 3108 6.855763 ATGTTCCATTTTCCTTTGCTATGA 57.144 33.333 0.00 0.00 0.00 2.15
2713 3111 6.071952 TGTTCCATTTTCCTTTGCTATGAGAC 60.072 38.462 0.00 0.00 0.00 3.36
2714 3112 5.569355 TCCATTTTCCTTTGCTATGAGACA 58.431 37.500 0.00 0.00 0.00 3.41
2715 3113 6.189859 TCCATTTTCCTTTGCTATGAGACAT 58.810 36.000 0.00 0.00 0.00 3.06
2716 3114 6.095860 TCCATTTTCCTTTGCTATGAGACATG 59.904 38.462 0.00 0.00 0.00 3.21
2717 3115 4.970662 TTTCCTTTGCTATGAGACATGC 57.029 40.909 0.00 0.00 0.00 4.06
2718 3116 3.632643 TCCTTTGCTATGAGACATGCA 57.367 42.857 0.00 0.00 0.00 3.96
2719 3117 4.160642 TCCTTTGCTATGAGACATGCAT 57.839 40.909 0.00 0.00 35.27 3.96
2720 3118 3.881089 TCCTTTGCTATGAGACATGCATG 59.119 43.478 25.09 25.09 35.27 4.06
2721 3119 3.881089 CCTTTGCTATGAGACATGCATGA 59.119 43.478 32.75 11.13 35.27 3.07
2722 3120 4.519350 CCTTTGCTATGAGACATGCATGAT 59.481 41.667 32.75 20.01 35.27 2.45
2723 3121 5.432885 TTTGCTATGAGACATGCATGATG 57.567 39.130 32.75 9.18 38.15 3.07
2724 3122 2.812011 TGCTATGAGACATGCATGATGC 59.188 45.455 32.75 21.51 45.29 3.91
2744 3142 7.971201 TGATGCATGGAGAGTATTAATCTTCT 58.029 34.615 2.46 0.00 0.00 2.85
2745 3143 8.435187 TGATGCATGGAGAGTATTAATCTTCTT 58.565 33.333 2.46 0.00 0.00 2.52
2746 3144 8.845413 ATGCATGGAGAGTATTAATCTTCTTC 57.155 34.615 0.00 0.00 0.00 2.87
2747 3145 6.925718 TGCATGGAGAGTATTAATCTTCTTCG 59.074 38.462 1.44 0.00 0.00 3.79
2753 3151 5.688176 AGAGTATTAATCTTCTTCGAAGCGC 59.312 40.000 20.56 0.00 0.00 5.92
2778 3176 5.237779 TCGTTCTTAACAACAAGGGAACATC 59.762 40.000 0.00 0.00 34.56 3.06
2816 3214 0.665369 AAGAAAGCGTACACGTCCCG 60.665 55.000 3.44 0.00 42.22 5.14
2831 3229 2.859992 CCCGAAAAAGGGCAGAGAG 58.140 57.895 0.00 0.00 45.72 3.20
2832 3230 0.036875 CCCGAAAAAGGGCAGAGAGT 59.963 55.000 0.00 0.00 45.72 3.24
2868 3266 2.620108 GGCCCAGCAGAAAAGAGAAGAT 60.620 50.000 0.00 0.00 0.00 2.40
2877 3285 5.064579 GCAGAAAAGAGAAGATAAGAGTGGC 59.935 44.000 0.00 0.00 0.00 5.01
2961 3370 1.705337 CGTCGCCCATCACACCAATC 61.705 60.000 0.00 0.00 0.00 2.67
2974 3383 0.324614 ACCAATCGTGCAGGATGTGA 59.675 50.000 21.75 0.00 39.31 3.58
2986 3395 4.404098 ATGTGAACCGGCGACCCC 62.404 66.667 9.30 0.00 0.00 4.95
3021 3430 5.488919 TCCTCATCTCCAATTACTTTCACCT 59.511 40.000 0.00 0.00 0.00 4.00
3024 3433 6.173339 TCATCTCCAATTACTTTCACCTCAC 58.827 40.000 0.00 0.00 0.00 3.51
3038 3447 6.401047 TTCACCTCACCTTATTATACTCCG 57.599 41.667 0.00 0.00 0.00 4.63
3039 3448 4.831155 TCACCTCACCTTATTATACTCCGG 59.169 45.833 0.00 0.00 0.00 5.14
3045 3454 7.201938 CCTCACCTTATTATACTCCGGTAAACA 60.202 40.741 0.00 0.00 0.00 2.83
3068 3484 7.405469 CACTGGTACGAGTGTATAGTAGTAG 57.595 44.000 25.08 0.38 38.88 2.57
3069 3485 6.983307 CACTGGTACGAGTGTATAGTAGTAGT 59.017 42.308 25.08 0.00 38.88 2.73
3070 3486 8.138074 CACTGGTACGAGTGTATAGTAGTAGTA 58.862 40.741 25.08 0.00 38.88 1.82
3071 3487 8.356657 ACTGGTACGAGTGTATAGTAGTAGTAG 58.643 40.741 10.00 0.00 32.48 2.57
3072 3488 8.239038 TGGTACGAGTGTATAGTAGTAGTAGT 57.761 38.462 0.00 0.00 32.11 2.73
3073 3489 9.350951 TGGTACGAGTGTATAGTAGTAGTAGTA 57.649 37.037 0.00 0.00 32.11 1.82
3089 3505 8.928270 AGTAGTAGTATGTCATTAACAAGTGC 57.072 34.615 0.00 0.00 42.37 4.40
3093 3509 6.486253 AGTATGTCATTAACAAGTGCAGTG 57.514 37.500 0.00 0.00 42.37 3.66
3098 3514 1.657822 TTAACAAGTGCAGTGCGTGA 58.342 45.000 17.27 0.00 0.00 4.35
3099 3515 1.877637 TAACAAGTGCAGTGCGTGAT 58.122 45.000 17.27 9.84 0.00 3.06
3100 3516 1.024271 AACAAGTGCAGTGCGTGATT 58.976 45.000 17.27 4.55 0.00 2.57
3101 3517 0.588252 ACAAGTGCAGTGCGTGATTC 59.412 50.000 17.27 2.21 0.00 2.52
3102 3518 0.870393 CAAGTGCAGTGCGTGATTCT 59.130 50.000 11.20 0.00 0.00 2.40
3103 3519 1.136141 CAAGTGCAGTGCGTGATTCTC 60.136 52.381 11.20 0.00 0.00 2.87
3104 3520 0.033920 AGTGCAGTGCGTGATTCTCA 59.966 50.000 11.20 0.00 0.00 3.27
3105 3521 0.867746 GTGCAGTGCGTGATTCTCAA 59.132 50.000 11.20 0.00 0.00 3.02
3106 3522 1.264020 GTGCAGTGCGTGATTCTCAAA 59.736 47.619 11.20 0.00 0.00 2.69
3107 3523 1.946081 TGCAGTGCGTGATTCTCAAAA 59.054 42.857 11.20 0.00 0.00 2.44
3108 3524 2.357323 TGCAGTGCGTGATTCTCAAAAA 59.643 40.909 11.20 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.011904 CATCTCCGCGCATCAAACG 60.012 57.895 8.75 0.00 0.00 3.60
2 3 1.089481 TCCATCTCCGCGCATCAAAC 61.089 55.000 8.75 0.00 0.00 2.93
3 4 1.089481 GTCCATCTCCGCGCATCAAA 61.089 55.000 8.75 0.00 0.00 2.69
4 5 1.521457 GTCCATCTCCGCGCATCAA 60.521 57.895 8.75 0.00 0.00 2.57
5 6 2.106938 GTCCATCTCCGCGCATCA 59.893 61.111 8.75 0.00 0.00 3.07
6 7 1.663074 GAGTCCATCTCCGCGCATC 60.663 63.158 8.75 0.00 37.22 3.91
8 9 4.193334 CGAGTCCATCTCCGCGCA 62.193 66.667 8.75 0.00 39.84 6.09
12 13 4.193334 TGCGCGAGTCCATCTCCG 62.193 66.667 12.10 0.00 39.84 4.63
13 14 2.279120 CTGCGCGAGTCCATCTCC 60.279 66.667 12.10 0.00 39.84 3.71
14 15 2.279120 CCTGCGCGAGTCCATCTC 60.279 66.667 12.10 0.00 39.62 2.75
15 16 2.755876 TCCTGCGCGAGTCCATCT 60.756 61.111 12.10 0.00 0.00 2.90
16 17 2.279120 CTCCTGCGCGAGTCCATC 60.279 66.667 12.10 0.00 0.00 3.51
17 18 2.290122 CTTCTCCTGCGCGAGTCCAT 62.290 60.000 12.10 0.00 0.00 3.41
18 19 2.989253 TTCTCCTGCGCGAGTCCA 60.989 61.111 12.10 0.00 0.00 4.02
19 20 2.202676 CTTCTCCTGCGCGAGTCC 60.203 66.667 12.10 0.00 0.00 3.85
20 21 2.202676 CCTTCTCCTGCGCGAGTC 60.203 66.667 12.10 0.00 0.00 3.36
22 23 1.518133 CTTCCTTCTCCTGCGCGAG 60.518 63.158 12.10 4.17 0.00 5.03
23 24 2.573869 CTTCCTTCTCCTGCGCGA 59.426 61.111 12.10 0.00 0.00 5.87
24 25 3.191539 GCTTCCTTCTCCTGCGCG 61.192 66.667 0.00 0.00 0.00 6.86
25 26 2.105466 CAGCTTCCTTCTCCTGCGC 61.105 63.158 0.00 0.00 0.00 6.09
26 27 0.739112 GACAGCTTCCTTCTCCTGCG 60.739 60.000 0.00 0.00 0.00 5.18
28 29 1.066286 CCAGACAGCTTCCTTCTCCTG 60.066 57.143 0.00 0.00 0.00 3.86
29 30 1.274712 CCAGACAGCTTCCTTCTCCT 58.725 55.000 0.00 0.00 0.00 3.69
30 31 0.980423 ACCAGACAGCTTCCTTCTCC 59.020 55.000 0.00 0.00 0.00 3.71
31 32 1.346068 ACACCAGACAGCTTCCTTCTC 59.654 52.381 0.00 0.00 0.00 2.87
32 33 1.346068 GACACCAGACAGCTTCCTTCT 59.654 52.381 0.00 0.00 0.00 2.85
33 34 1.070758 TGACACCAGACAGCTTCCTTC 59.929 52.381 0.00 0.00 0.00 3.46
34 35 1.131638 TGACACCAGACAGCTTCCTT 58.868 50.000 0.00 0.00 0.00 3.36
35 36 1.002888 CATGACACCAGACAGCTTCCT 59.997 52.381 0.00 0.00 0.00 3.36
36 37 1.446907 CATGACACCAGACAGCTTCC 58.553 55.000 0.00 0.00 0.00 3.46
37 38 1.271054 ACCATGACACCAGACAGCTTC 60.271 52.381 0.00 0.00 0.00 3.86
38 39 0.767375 ACCATGACACCAGACAGCTT 59.233 50.000 0.00 0.00 0.00 3.74
39 40 0.035881 CACCATGACACCAGACAGCT 59.964 55.000 0.00 0.00 0.00 4.24
40 41 0.035317 TCACCATGACACCAGACAGC 59.965 55.000 0.00 0.00 0.00 4.40
41 42 1.800805 GTCACCATGACACCAGACAG 58.199 55.000 4.08 0.00 46.22 3.51
50 51 0.447801 GCCATCAACGTCACCATGAC 59.552 55.000 0.00 0.00 43.65 3.06
51 52 0.036022 TGCCATCAACGTCACCATGA 59.964 50.000 0.00 0.00 0.00 3.07
52 53 0.880441 TTGCCATCAACGTCACCATG 59.120 50.000 0.00 0.00 0.00 3.66
53 54 1.541147 CTTTGCCATCAACGTCACCAT 59.459 47.619 0.00 0.00 30.75 3.55
54 55 0.950836 CTTTGCCATCAACGTCACCA 59.049 50.000 0.00 0.00 30.75 4.17
55 56 1.197721 CTCTTTGCCATCAACGTCACC 59.802 52.381 0.00 0.00 30.75 4.02
56 57 1.197721 CCTCTTTGCCATCAACGTCAC 59.802 52.381 0.00 0.00 30.75 3.67
57 58 1.522668 CCTCTTTGCCATCAACGTCA 58.477 50.000 0.00 0.00 30.75 4.35
58 59 0.169009 GCCTCTTTGCCATCAACGTC 59.831 55.000 0.00 0.00 30.75 4.34
59 60 2.257353 GCCTCTTTGCCATCAACGT 58.743 52.632 0.00 0.00 30.75 3.99
68 69 2.643232 CCTTGCCAGGCCTCTTTGC 61.643 63.158 9.64 3.92 31.53 3.68
69 70 1.228675 ACCTTGCCAGGCCTCTTTG 60.229 57.895 9.64 0.00 45.56 2.77
70 71 1.075659 GACCTTGCCAGGCCTCTTT 59.924 57.895 9.64 0.00 45.56 2.52
71 72 2.759795 GACCTTGCCAGGCCTCTT 59.240 61.111 9.64 0.00 45.56 2.85
72 73 3.710722 CGACCTTGCCAGGCCTCT 61.711 66.667 9.64 0.00 45.56 3.69
73 74 4.785453 CCGACCTTGCCAGGCCTC 62.785 72.222 9.64 0.00 45.56 4.70
78 79 2.281761 AAGCACCGACCTTGCCAG 60.282 61.111 0.00 0.00 41.18 4.85
79 80 2.281484 GAAGCACCGACCTTGCCA 60.281 61.111 0.00 0.00 41.18 4.92
80 81 2.281484 TGAAGCACCGACCTTGCC 60.281 61.111 0.00 0.00 41.18 4.52
81 82 1.166531 AACTGAAGCACCGACCTTGC 61.167 55.000 0.00 0.00 40.52 4.01
82 83 0.868406 GAACTGAAGCACCGACCTTG 59.132 55.000 0.00 0.00 0.00 3.61
83 84 0.759346 AGAACTGAAGCACCGACCTT 59.241 50.000 0.00 0.00 0.00 3.50
84 85 0.034059 CAGAACTGAAGCACCGACCT 59.966 55.000 0.00 0.00 0.00 3.85
85 86 1.569479 GCAGAACTGAAGCACCGACC 61.569 60.000 5.97 0.00 0.00 4.79
86 87 0.601311 AGCAGAACTGAAGCACCGAC 60.601 55.000 5.97 0.00 0.00 4.79
87 88 0.319900 GAGCAGAACTGAAGCACCGA 60.320 55.000 5.97 0.00 0.00 4.69
88 89 0.320247 AGAGCAGAACTGAAGCACCG 60.320 55.000 5.97 0.00 0.00 4.94
89 90 1.155042 CAGAGCAGAACTGAAGCACC 58.845 55.000 5.97 0.00 37.54 5.01
90 91 2.067766 CTCAGAGCAGAACTGAAGCAC 58.932 52.381 5.97 0.00 42.58 4.40
91 92 1.001746 CCTCAGAGCAGAACTGAAGCA 59.998 52.381 5.97 0.00 42.58 3.91
92 93 1.274728 TCCTCAGAGCAGAACTGAAGC 59.725 52.381 5.97 0.00 42.58 3.86
93 94 3.523547 CATCCTCAGAGCAGAACTGAAG 58.476 50.000 5.97 0.00 42.58 3.02
94 95 2.235650 CCATCCTCAGAGCAGAACTGAA 59.764 50.000 5.97 0.00 42.58 3.02
95 96 1.829849 CCATCCTCAGAGCAGAACTGA 59.170 52.381 5.97 0.00 41.26 3.41
96 97 1.829849 TCCATCCTCAGAGCAGAACTG 59.170 52.381 0.00 0.00 36.80 3.16
97 98 1.830477 GTCCATCCTCAGAGCAGAACT 59.170 52.381 0.00 0.00 0.00 3.01
98 99 1.134551 GGTCCATCCTCAGAGCAGAAC 60.135 57.143 0.00 0.00 0.00 3.01
99 100 1.198713 GGTCCATCCTCAGAGCAGAA 58.801 55.000 0.00 0.00 0.00 3.02
100 101 1.039785 CGGTCCATCCTCAGAGCAGA 61.040 60.000 0.00 0.00 0.00 4.26
101 102 1.039785 TCGGTCCATCCTCAGAGCAG 61.040 60.000 0.00 0.00 0.00 4.24
102 103 1.000359 TCGGTCCATCCTCAGAGCA 60.000 57.895 0.00 0.00 0.00 4.26
103 104 0.753479 TCTCGGTCCATCCTCAGAGC 60.753 60.000 0.00 0.00 0.00 4.09
104 105 1.133945 TCTCTCGGTCCATCCTCAGAG 60.134 57.143 0.00 0.00 39.92 3.35
105 106 0.919710 TCTCTCGGTCCATCCTCAGA 59.080 55.000 0.00 0.00 0.00 3.27
106 107 1.612950 CATCTCTCGGTCCATCCTCAG 59.387 57.143 0.00 0.00 0.00 3.35
107 108 1.215423 TCATCTCTCGGTCCATCCTCA 59.785 52.381 0.00 0.00 0.00 3.86
108 109 1.988293 TCATCTCTCGGTCCATCCTC 58.012 55.000 0.00 0.00 0.00 3.71
109 110 2.246469 CATCATCTCTCGGTCCATCCT 58.754 52.381 0.00 0.00 0.00 3.24
110 111 1.274728 CCATCATCTCTCGGTCCATCC 59.725 57.143 0.00 0.00 0.00 3.51
111 112 2.230992 CTCCATCATCTCTCGGTCCATC 59.769 54.545 0.00 0.00 0.00 3.51
112 113 2.246469 CTCCATCATCTCTCGGTCCAT 58.754 52.381 0.00 0.00 0.00 3.41
113 114 1.697284 CTCCATCATCTCTCGGTCCA 58.303 55.000 0.00 0.00 0.00 4.02
114 115 0.965439 CCTCCATCATCTCTCGGTCC 59.035 60.000 0.00 0.00 0.00 4.46
115 116 1.339610 CACCTCCATCATCTCTCGGTC 59.660 57.143 0.00 0.00 0.00 4.79
116 117 1.063642 TCACCTCCATCATCTCTCGGT 60.064 52.381 0.00 0.00 0.00 4.69
117 118 1.339610 GTCACCTCCATCATCTCTCGG 59.660 57.143 0.00 0.00 0.00 4.63
118 119 1.001924 CGTCACCTCCATCATCTCTCG 60.002 57.143 0.00 0.00 0.00 4.04
119 120 1.339610 CCGTCACCTCCATCATCTCTC 59.660 57.143 0.00 0.00 0.00 3.20
120 121 1.407936 CCGTCACCTCCATCATCTCT 58.592 55.000 0.00 0.00 0.00 3.10
121 122 0.249657 GCCGTCACCTCCATCATCTC 60.250 60.000 0.00 0.00 0.00 2.75
122 123 1.690219 GGCCGTCACCTCCATCATCT 61.690 60.000 0.00 0.00 0.00 2.90
123 124 1.227674 GGCCGTCACCTCCATCATC 60.228 63.158 0.00 0.00 0.00 2.92
124 125 2.746375 GGGCCGTCACCTCCATCAT 61.746 63.158 0.00 0.00 0.00 2.45
125 126 3.399181 GGGCCGTCACCTCCATCA 61.399 66.667 0.00 0.00 0.00 3.07
126 127 2.670148 AAGGGCCGTCACCTCCATC 61.670 63.158 0.00 0.00 37.35 3.51
127 128 2.610859 AAGGGCCGTCACCTCCAT 60.611 61.111 0.00 0.00 37.35 3.41
128 129 3.636231 CAAGGGCCGTCACCTCCA 61.636 66.667 0.00 0.00 37.35 3.86
129 130 2.240162 CTACAAGGGCCGTCACCTCC 62.240 65.000 0.00 0.00 37.35 4.30
130 131 1.218316 CTACAAGGGCCGTCACCTC 59.782 63.158 0.00 0.00 37.35 3.85
131 132 2.955881 GCTACAAGGGCCGTCACCT 61.956 63.158 0.00 0.00 40.96 4.00
132 133 2.436115 GCTACAAGGGCCGTCACC 60.436 66.667 0.00 0.00 0.00 4.02
133 134 2.813908 CGCTACAAGGGCCGTCAC 60.814 66.667 0.00 0.00 0.00 3.67
134 135 3.307906 ACGCTACAAGGGCCGTCA 61.308 61.111 0.00 0.00 0.00 4.35
135 136 2.813908 CACGCTACAAGGGCCGTC 60.814 66.667 0.00 0.00 0.00 4.79
140 141 3.118454 CACCGCACGCTACAAGGG 61.118 66.667 0.00 0.00 0.00 3.95
141 142 3.788766 GCACCGCACGCTACAAGG 61.789 66.667 0.00 0.00 0.00 3.61
142 143 2.730672 GAGCACCGCACGCTACAAG 61.731 63.158 0.00 0.00 40.63 3.16
143 144 2.736995 GAGCACCGCACGCTACAA 60.737 61.111 0.00 0.00 40.63 2.41
144 145 3.984749 TGAGCACCGCACGCTACA 61.985 61.111 0.00 0.00 40.63 2.74
145 146 3.479269 GTGAGCACCGCACGCTAC 61.479 66.667 0.00 0.00 40.63 3.58
146 147 3.626680 GAGTGAGCACCGCACGCTA 62.627 63.158 0.00 0.00 39.75 4.26
150 151 4.357947 TCCGAGTGAGCACCGCAC 62.358 66.667 0.00 0.00 34.50 5.34
151 152 4.056125 CTCCGAGTGAGCACCGCA 62.056 66.667 0.00 0.00 33.47 5.69
152 153 4.057428 ACTCCGAGTGAGCACCGC 62.057 66.667 0.00 0.00 45.61 5.68
161 162 1.893786 GATCTGGCACACTCCGAGT 59.106 57.895 0.00 0.00 0.00 4.18
162 163 1.226802 CGATCTGGCACACTCCGAG 60.227 63.158 0.00 0.00 0.00 4.63
163 164 2.710902 CCGATCTGGCACACTCCGA 61.711 63.158 0.00 0.00 0.00 4.55
164 165 2.202797 CCGATCTGGCACACTCCG 60.203 66.667 0.00 0.00 0.00 4.63
165 166 1.448540 CACCGATCTGGCACACTCC 60.449 63.158 3.85 0.00 43.94 3.85
166 167 1.016130 CACACCGATCTGGCACACTC 61.016 60.000 3.85 0.00 43.94 3.51
167 168 1.004560 CACACCGATCTGGCACACT 60.005 57.895 3.85 0.00 43.94 3.55
168 169 1.005037 TCACACCGATCTGGCACAC 60.005 57.895 3.85 0.00 43.94 3.82
169 170 1.184970 TCTCACACCGATCTGGCACA 61.185 55.000 3.85 0.00 43.94 4.57
170 171 0.737715 GTCTCACACCGATCTGGCAC 60.738 60.000 3.85 0.00 43.94 5.01
171 172 1.591703 GTCTCACACCGATCTGGCA 59.408 57.895 3.85 0.00 43.94 4.92
172 173 1.153549 GGTCTCACACCGATCTGGC 60.154 63.158 3.85 0.00 43.94 4.85
180 181 0.673644 CGTGGATTGGGTCTCACACC 60.674 60.000 0.00 0.00 45.97 4.16
181 182 0.034896 ACGTGGATTGGGTCTCACAC 59.965 55.000 0.00 0.00 31.96 3.82
182 183 1.548719 CTACGTGGATTGGGTCTCACA 59.451 52.381 0.00 0.00 31.96 3.58
183 184 1.549170 ACTACGTGGATTGGGTCTCAC 59.451 52.381 5.70 0.00 0.00 3.51
184 185 1.548719 CACTACGTGGATTGGGTCTCA 59.451 52.381 5.70 0.00 0.00 3.27
185 186 2.295253 CACTACGTGGATTGGGTCTC 57.705 55.000 5.70 0.00 0.00 3.36
196 197 0.744414 CCCATCCAAGCCACTACGTG 60.744 60.000 0.00 0.00 0.00 4.49
197 198 0.907704 TCCCATCCAAGCCACTACGT 60.908 55.000 0.00 0.00 0.00 3.57
198 199 0.462047 GTCCCATCCAAGCCACTACG 60.462 60.000 0.00 0.00 0.00 3.51
199 200 0.618458 TGTCCCATCCAAGCCACTAC 59.382 55.000 0.00 0.00 0.00 2.73
200 201 0.618458 GTGTCCCATCCAAGCCACTA 59.382 55.000 0.00 0.00 0.00 2.74
201 202 1.380302 GTGTCCCATCCAAGCCACT 59.620 57.895 0.00 0.00 0.00 4.00
202 203 1.678970 GGTGTCCCATCCAAGCCAC 60.679 63.158 0.00 0.00 0.00 5.01
203 204 2.763215 GGTGTCCCATCCAAGCCA 59.237 61.111 0.00 0.00 0.00 4.75
204 205 2.043953 GGGTGTCCCATCCAAGCC 60.044 66.667 0.00 0.00 44.65 4.35
205 206 2.438434 CGGGTGTCCCATCCAAGC 60.438 66.667 5.64 0.00 45.83 4.01
206 207 2.272146 CCGGGTGTCCCATCCAAG 59.728 66.667 5.64 0.00 45.83 3.61
207 208 4.041762 GCCGGGTGTCCCATCCAA 62.042 66.667 2.18 0.00 45.83 3.53
209 210 1.917336 TAAAGCCGGGTGTCCCATCC 61.917 60.000 7.07 0.00 45.83 3.51
210 211 0.034863 TTAAAGCCGGGTGTCCCATC 60.035 55.000 7.07 0.00 45.83 3.51
211 212 0.406361 TTTAAAGCCGGGTGTCCCAT 59.594 50.000 7.07 0.00 45.83 4.00
212 213 0.406361 ATTTAAAGCCGGGTGTCCCA 59.594 50.000 7.07 0.00 45.83 4.37
213 214 0.815095 CATTTAAAGCCGGGTGTCCC 59.185 55.000 7.07 0.00 41.09 4.46
214 215 1.541379 ACATTTAAAGCCGGGTGTCC 58.459 50.000 7.07 0.00 0.00 4.02
215 216 3.128068 CCTAACATTTAAAGCCGGGTGTC 59.872 47.826 7.07 0.00 0.00 3.67
216 217 3.086282 CCTAACATTTAAAGCCGGGTGT 58.914 45.455 7.07 3.33 0.00 4.16
217 218 2.159296 GCCTAACATTTAAAGCCGGGTG 60.159 50.000 7.07 0.00 0.00 4.61
218 219 2.097036 GCCTAACATTTAAAGCCGGGT 58.903 47.619 0.00 0.00 0.00 5.28
219 220 2.375146 AGCCTAACATTTAAAGCCGGG 58.625 47.619 2.18 0.00 0.00 5.73
220 221 4.173256 CAAAGCCTAACATTTAAAGCCGG 58.827 43.478 0.00 0.00 0.00 6.13
221 222 4.173256 CCAAAGCCTAACATTTAAAGCCG 58.827 43.478 0.00 0.00 0.00 5.52
222 223 5.147330 ACCAAAGCCTAACATTTAAAGCC 57.853 39.130 0.00 0.00 0.00 4.35
223 224 6.920817 AGTACCAAAGCCTAACATTTAAAGC 58.079 36.000 0.00 0.00 0.00 3.51
251 252 1.675552 CGGGCCTAATACCAAACAGG 58.324 55.000 0.84 0.00 45.67 4.00
252 253 1.210967 TCCGGGCCTAATACCAAACAG 59.789 52.381 0.84 0.00 0.00 3.16
253 254 1.065272 GTCCGGGCCTAATACCAAACA 60.065 52.381 0.84 0.00 0.00 2.83
254 255 1.065272 TGTCCGGGCCTAATACCAAAC 60.065 52.381 2.12 0.00 0.00 2.93
255 256 1.287217 TGTCCGGGCCTAATACCAAA 58.713 50.000 2.12 0.00 0.00 3.28
256 257 1.513858 ATGTCCGGGCCTAATACCAA 58.486 50.000 2.12 0.00 0.00 3.67
257 258 1.418637 GAATGTCCGGGCCTAATACCA 59.581 52.381 2.12 0.00 0.00 3.25
258 259 1.418637 TGAATGTCCGGGCCTAATACC 59.581 52.381 2.12 0.00 0.00 2.73
259 260 2.767505 CTGAATGTCCGGGCCTAATAC 58.232 52.381 2.12 0.00 0.00 1.89
260 261 1.071699 GCTGAATGTCCGGGCCTAATA 59.928 52.381 2.12 0.00 0.00 0.98
261 262 0.179018 GCTGAATGTCCGGGCCTAAT 60.179 55.000 2.12 0.00 0.00 1.73
262 263 1.223487 GCTGAATGTCCGGGCCTAA 59.777 57.895 2.12 0.00 0.00 2.69
263 264 1.992834 TGCTGAATGTCCGGGCCTA 60.993 57.895 2.12 0.00 0.00 3.93
264 265 3.329889 TGCTGAATGTCCGGGCCT 61.330 61.111 2.12 0.00 0.00 5.19
265 266 3.134127 GTGCTGAATGTCCGGGCC 61.134 66.667 2.12 0.00 0.00 5.80
266 267 3.499737 CGTGCTGAATGTCCGGGC 61.500 66.667 0.00 0.00 0.00 6.13
267 268 3.499737 GCGTGCTGAATGTCCGGG 61.500 66.667 0.00 0.00 0.00 5.73
268 269 3.499737 GGCGTGCTGAATGTCCGG 61.500 66.667 0.00 0.00 0.00 5.14
269 270 1.970917 GAAGGCGTGCTGAATGTCCG 61.971 60.000 0.00 0.00 0.00 4.79
270 271 0.955428 TGAAGGCGTGCTGAATGTCC 60.955 55.000 0.00 0.00 0.00 4.02
271 272 1.089920 ATGAAGGCGTGCTGAATGTC 58.910 50.000 0.00 0.00 0.00 3.06
272 273 2.401583 TATGAAGGCGTGCTGAATGT 57.598 45.000 0.00 0.00 0.00 2.71
273 274 3.488047 CCTTTATGAAGGCGTGCTGAATG 60.488 47.826 2.91 0.00 45.59 2.67
274 275 2.684881 CCTTTATGAAGGCGTGCTGAAT 59.315 45.455 2.91 0.00 45.59 2.57
275 276 2.083774 CCTTTATGAAGGCGTGCTGAA 58.916 47.619 2.91 0.00 45.59 3.02
276 277 1.737838 CCTTTATGAAGGCGTGCTGA 58.262 50.000 2.91 0.00 45.59 4.26
285 286 7.009179 TGCTACTCATATCCCCTTTATGAAG 57.991 40.000 0.00 0.00 36.05 3.02
286 287 7.224297 GTTGCTACTCATATCCCCTTTATGAA 58.776 38.462 0.00 0.00 36.05 2.57
287 288 6.518369 CGTTGCTACTCATATCCCCTTTATGA 60.518 42.308 0.00 0.00 35.38 2.15
288 289 5.639506 CGTTGCTACTCATATCCCCTTTATG 59.360 44.000 0.00 0.00 0.00 1.90
289 290 5.280011 CCGTTGCTACTCATATCCCCTTTAT 60.280 44.000 0.00 0.00 0.00 1.40
290 291 4.039973 CCGTTGCTACTCATATCCCCTTTA 59.960 45.833 0.00 0.00 0.00 1.85
291 292 3.181454 CCGTTGCTACTCATATCCCCTTT 60.181 47.826 0.00 0.00 0.00 3.11
292 293 2.368875 CCGTTGCTACTCATATCCCCTT 59.631 50.000 0.00 0.00 0.00 3.95
293 294 1.971357 CCGTTGCTACTCATATCCCCT 59.029 52.381 0.00 0.00 0.00 4.79
294 295 1.692519 ACCGTTGCTACTCATATCCCC 59.307 52.381 0.00 0.00 0.00 4.81
295 296 2.102588 ACACCGTTGCTACTCATATCCC 59.897 50.000 0.00 0.00 0.00 3.85
296 297 3.454371 ACACCGTTGCTACTCATATCC 57.546 47.619 0.00 0.00 0.00 2.59
297 298 4.181578 ACAACACCGTTGCTACTCATATC 58.818 43.478 6.77 0.00 0.00 1.63
298 299 4.181578 GACAACACCGTTGCTACTCATAT 58.818 43.478 6.77 0.00 0.00 1.78
299 300 3.006003 TGACAACACCGTTGCTACTCATA 59.994 43.478 6.77 0.00 0.00 2.15
300 301 2.224185 TGACAACACCGTTGCTACTCAT 60.224 45.455 6.77 0.00 0.00 2.90
301 302 1.137282 TGACAACACCGTTGCTACTCA 59.863 47.619 6.77 1.03 0.00 3.41
302 303 1.860676 TGACAACACCGTTGCTACTC 58.139 50.000 6.77 0.00 0.00 2.59
303 304 2.159014 TCTTGACAACACCGTTGCTACT 60.159 45.455 6.77 0.00 0.00 2.57
304 305 2.206750 TCTTGACAACACCGTTGCTAC 58.793 47.619 6.77 0.00 0.00 3.58
305 306 2.605837 TCTTGACAACACCGTTGCTA 57.394 45.000 6.77 0.00 0.00 3.49
306 307 1.603802 CATCTTGACAACACCGTTGCT 59.396 47.619 6.77 0.00 0.00 3.91
307 308 1.334960 CCATCTTGACAACACCGTTGC 60.335 52.381 6.77 1.43 0.00 4.17
308 309 1.946768 ACCATCTTGACAACACCGTTG 59.053 47.619 5.34 5.34 0.00 4.10
309 310 1.946768 CACCATCTTGACAACACCGTT 59.053 47.619 0.00 0.00 0.00 4.44
310 311 1.593196 CACCATCTTGACAACACCGT 58.407 50.000 0.00 0.00 0.00 4.83
311 312 0.874390 CCACCATCTTGACAACACCG 59.126 55.000 0.00 0.00 0.00 4.94
312 313 0.598065 GCCACCATCTTGACAACACC 59.402 55.000 0.00 0.00 0.00 4.16
313 314 1.609208 AGCCACCATCTTGACAACAC 58.391 50.000 0.00 0.00 0.00 3.32
314 315 2.229792 GAAGCCACCATCTTGACAACA 58.770 47.619 0.00 0.00 0.00 3.33
315 316 2.227388 CTGAAGCCACCATCTTGACAAC 59.773 50.000 0.00 0.00 0.00 3.32
316 317 2.106338 TCTGAAGCCACCATCTTGACAA 59.894 45.455 0.00 0.00 0.00 3.18
317 318 1.699083 TCTGAAGCCACCATCTTGACA 59.301 47.619 0.00 0.00 0.00 3.58
318 319 2.079925 GTCTGAAGCCACCATCTTGAC 58.920 52.381 0.00 0.00 0.00 3.18
319 320 1.980765 AGTCTGAAGCCACCATCTTGA 59.019 47.619 0.00 0.00 0.00 3.02
320 321 2.486472 AGTCTGAAGCCACCATCTTG 57.514 50.000 0.00 0.00 0.00 3.02
321 322 4.851639 ATAAGTCTGAAGCCACCATCTT 57.148 40.909 0.00 0.00 0.00 2.40
322 323 4.851639 AATAAGTCTGAAGCCACCATCT 57.148 40.909 0.00 0.00 0.00 2.90
323 324 6.543831 ACATTAATAAGTCTGAAGCCACCATC 59.456 38.462 0.00 0.00 0.00 3.51
324 325 6.426587 ACATTAATAAGTCTGAAGCCACCAT 58.573 36.000 0.00 0.00 0.00 3.55
325 326 5.815581 ACATTAATAAGTCTGAAGCCACCA 58.184 37.500 0.00 0.00 0.00 4.17
326 327 7.715249 TGATACATTAATAAGTCTGAAGCCACC 59.285 37.037 0.00 0.00 0.00 4.61
327 328 8.552034 GTGATACATTAATAAGTCTGAAGCCAC 58.448 37.037 0.00 0.00 0.00 5.01
328 329 7.715249 GGTGATACATTAATAAGTCTGAAGCCA 59.285 37.037 0.00 0.00 0.00 4.75
329 330 7.934120 AGGTGATACATTAATAAGTCTGAAGCC 59.066 37.037 0.00 0.00 0.00 4.35
330 331 8.894768 AGGTGATACATTAATAAGTCTGAAGC 57.105 34.615 0.00 0.00 0.00 3.86
365 366 8.836413 GCAGCCATACTAGTAATTATTCACAAA 58.164 33.333 6.70 0.00 0.00 2.83
366 367 7.990314 TGCAGCCATACTAGTAATTATTCACAA 59.010 33.333 6.70 0.00 0.00 3.33
367 368 7.505258 TGCAGCCATACTAGTAATTATTCACA 58.495 34.615 6.70 0.00 0.00 3.58
368 369 7.962964 TGCAGCCATACTAGTAATTATTCAC 57.037 36.000 6.70 0.00 0.00 3.18
369 370 7.119699 GCATGCAGCCATACTAGTAATTATTCA 59.880 37.037 14.21 2.62 37.23 2.57
370 371 7.119699 TGCATGCAGCCATACTAGTAATTATTC 59.880 37.037 18.46 0.00 44.83 1.75
371 372 6.942005 TGCATGCAGCCATACTAGTAATTATT 59.058 34.615 18.46 0.00 44.83 1.40
372 373 6.475504 TGCATGCAGCCATACTAGTAATTAT 58.524 36.000 18.46 0.00 44.83 1.28
373 374 5.863965 TGCATGCAGCCATACTAGTAATTA 58.136 37.500 18.46 0.00 44.83 1.40
374 375 4.717877 TGCATGCAGCCATACTAGTAATT 58.282 39.130 18.46 0.00 44.83 1.40
375 376 4.356405 TGCATGCAGCCATACTAGTAAT 57.644 40.909 18.46 0.00 44.83 1.89
376 377 3.836365 TGCATGCAGCCATACTAGTAA 57.164 42.857 18.46 0.00 44.83 2.24
377 378 3.614870 CGATGCATGCAGCCATACTAGTA 60.615 47.826 28.76 4.77 44.83 1.82
378 379 2.775890 GATGCATGCAGCCATACTAGT 58.224 47.619 25.21 3.44 44.83 2.57
379 380 1.730612 CGATGCATGCAGCCATACTAG 59.269 52.381 28.76 10.20 44.83 2.57
380 381 1.070601 ACGATGCATGCAGCCATACTA 59.929 47.619 28.76 0.09 44.83 1.82
381 382 0.179037 ACGATGCATGCAGCCATACT 60.179 50.000 28.76 9.02 44.83 2.12
382 383 0.236711 GACGATGCATGCAGCCATAC 59.763 55.000 28.76 14.12 44.83 2.39
383 384 0.886043 GGACGATGCATGCAGCCATA 60.886 55.000 28.76 2.58 44.83 2.74
384 385 2.191513 GGACGATGCATGCAGCCAT 61.192 57.895 28.76 18.07 44.83 4.40
385 386 2.825387 GGACGATGCATGCAGCCA 60.825 61.111 28.76 3.84 44.83 4.75
386 387 2.825387 TGGACGATGCATGCAGCC 60.825 61.111 28.76 23.21 44.83 4.85
387 388 1.164662 ATCTGGACGATGCATGCAGC 61.165 55.000 25.69 25.69 45.96 5.25
388 389 0.586802 CATCTGGACGATGCATGCAG 59.413 55.000 26.69 15.79 42.75 4.41
389 390 2.697819 CATCTGGACGATGCATGCA 58.302 52.632 25.04 25.04 42.75 3.96
396 397 0.749649 GGTCTCTGCATCTGGACGAT 59.250 55.000 0.00 0.00 0.00 3.73
397 398 1.657751 CGGTCTCTGCATCTGGACGA 61.658 60.000 0.00 0.00 0.00 4.20
398 399 1.226802 CGGTCTCTGCATCTGGACG 60.227 63.158 0.00 0.00 0.00 4.79
399 400 1.142748 CCGGTCTCTGCATCTGGAC 59.857 63.158 0.00 0.00 0.00 4.02
400 401 1.000359 TCCGGTCTCTGCATCTGGA 60.000 57.895 0.00 0.00 34.69 3.86
401 402 1.326213 ACTCCGGTCTCTGCATCTGG 61.326 60.000 0.00 0.00 0.00 3.86
402 403 1.066303 GTACTCCGGTCTCTGCATCTG 59.934 57.143 0.00 0.00 0.00 2.90
403 404 1.341089 TGTACTCCGGTCTCTGCATCT 60.341 52.381 0.00 0.00 0.00 2.90
404 405 1.103803 TGTACTCCGGTCTCTGCATC 58.896 55.000 0.00 0.00 0.00 3.91
405 406 1.683917 GATGTACTCCGGTCTCTGCAT 59.316 52.381 0.00 0.00 0.00 3.96
406 407 1.103803 GATGTACTCCGGTCTCTGCA 58.896 55.000 0.00 0.00 0.00 4.41
407 408 0.386113 GGATGTACTCCGGTCTCTGC 59.614 60.000 0.00 0.00 33.29 4.26
451 452 9.736023 GTCATTCATTTAGAAAACACTGTTTCT 57.264 29.630 7.62 9.02 46.88 2.52
452 453 9.736023 AGTCATTCATTTAGAAAACACTGTTTC 57.264 29.630 7.62 2.58 40.22 2.78
454 455 9.520204 CAAGTCATTCATTTAGAAAACACTGTT 57.480 29.630 0.00 0.00 40.22 3.16
455 456 8.686334 ACAAGTCATTCATTTAGAAAACACTGT 58.314 29.630 0.00 0.00 40.22 3.55
471 472 6.721571 TCCACGAATCTAAACAAGTCATTC 57.278 37.500 0.00 0.00 0.00 2.67
493 494 4.538917 TCCGTTTCAAACCGCTTTATTTC 58.461 39.130 0.00 0.00 0.00 2.17
501 502 0.388006 CCCAATCCGTTTCAAACCGC 60.388 55.000 0.00 0.00 0.00 5.68
508 509 0.808755 ATCAACGCCCAATCCGTTTC 59.191 50.000 0.00 0.00 45.56 2.78
579 580 3.546009 ACCCGATGGTGATACCCG 58.454 61.111 0.00 0.00 45.58 5.28
642 644 2.484062 GGCCCAATCATCACCAGCG 61.484 63.158 0.00 0.00 0.00 5.18
689 691 4.394712 GTCACCTCCGCACCCTGG 62.395 72.222 0.00 0.00 0.00 4.45
724 726 2.905075 TGGATCGAGCACCAACTATTG 58.095 47.619 1.84 0.00 32.93 1.90
736 738 5.394663 GGAATGGAGTATGGTATGGATCGAG 60.395 48.000 0.00 0.00 0.00 4.04
737 739 4.466370 GGAATGGAGTATGGTATGGATCGA 59.534 45.833 0.00 0.00 0.00 3.59
738 740 4.467795 AGGAATGGAGTATGGTATGGATCG 59.532 45.833 0.00 0.00 0.00 3.69
739 741 5.485353 TCAGGAATGGAGTATGGTATGGATC 59.515 44.000 0.00 0.00 0.00 3.36
740 742 5.249393 GTCAGGAATGGAGTATGGTATGGAT 59.751 44.000 0.00 0.00 0.00 3.41
741 743 4.593206 GTCAGGAATGGAGTATGGTATGGA 59.407 45.833 0.00 0.00 0.00 3.41
742 744 4.263068 GGTCAGGAATGGAGTATGGTATGG 60.263 50.000 0.00 0.00 0.00 2.74
743 745 4.347876 TGGTCAGGAATGGAGTATGGTATG 59.652 45.833 0.00 0.00 0.00 2.39
744 746 4.566837 TGGTCAGGAATGGAGTATGGTAT 58.433 43.478 0.00 0.00 0.00 2.73
745 747 3.967326 CTGGTCAGGAATGGAGTATGGTA 59.033 47.826 0.00 0.00 0.00 3.25
746 748 2.774234 CTGGTCAGGAATGGAGTATGGT 59.226 50.000 0.00 0.00 0.00 3.55
747 749 2.486191 GCTGGTCAGGAATGGAGTATGG 60.486 54.545 0.00 0.00 0.00 2.74
748 750 2.437281 AGCTGGTCAGGAATGGAGTATG 59.563 50.000 0.00 0.00 0.00 2.39
749 751 2.769209 AGCTGGTCAGGAATGGAGTAT 58.231 47.619 0.00 0.00 0.00 2.12
750 752 2.254152 AGCTGGTCAGGAATGGAGTA 57.746 50.000 0.00 0.00 0.00 2.59
751 753 1.366319 AAGCTGGTCAGGAATGGAGT 58.634 50.000 0.00 0.00 0.00 3.85
871 1165 3.468552 GGGGGTGGGCTTTTAAAGT 57.531 52.632 6.57 0.00 0.00 2.66
939 1233 4.245660 AGTAACAGTAGCTACGTACGTGA 58.754 43.478 30.25 13.33 0.00 4.35
987 1281 5.287674 TCATCTCCATTGATCTCCTTGTC 57.712 43.478 0.00 0.00 0.00 3.18
1010 1304 0.397564 GGTGTCCCTCCCGTTAACAA 59.602 55.000 6.39 0.00 0.00 2.83
1035 1329 4.603535 AGGCCAAGGTGGTGGTGC 62.604 66.667 5.01 0.00 40.46 5.01
1124 1424 3.117171 CAGCAGCGGTCAGAGCAC 61.117 66.667 0.00 0.00 37.01 4.40
1222 1522 2.279985 ATCTGCATGCGAGCGAGG 60.280 61.111 14.09 0.00 37.31 4.63
1223 1523 1.590792 TCATCTGCATGCGAGCGAG 60.591 57.895 14.09 4.27 37.31 5.03
1224 1524 1.879884 GTCATCTGCATGCGAGCGA 60.880 57.895 14.09 10.85 37.31 4.93
1539 1839 1.803519 GAAGCTGTCCTCGAGCACG 60.804 63.158 6.99 0.00 39.05 5.34
1542 1842 0.739112 CCTTGAAGCTGTCCTCGAGC 60.739 60.000 6.99 0.00 36.65 5.03
1613 1913 5.174395 TGTTTGTTGACCTTGGTTGATTTG 58.826 37.500 0.00 0.00 0.00 2.32
1674 1974 5.006746 CACGTAGAGCATCCCAAATTTAGAC 59.993 44.000 0.00 0.00 33.66 2.59
1677 1977 3.625764 GCACGTAGAGCATCCCAAATTTA 59.374 43.478 0.00 0.00 45.32 1.40
1678 1978 2.423538 GCACGTAGAGCATCCCAAATTT 59.576 45.455 0.00 0.00 45.32 1.82
1685 1989 0.457853 TCAACGCACGTAGAGCATCC 60.458 55.000 0.00 0.00 46.65 3.51
1686 1990 1.256376 CATCAACGCACGTAGAGCATC 59.744 52.381 0.00 0.00 46.65 3.91
1687 1991 1.280982 CATCAACGCACGTAGAGCAT 58.719 50.000 0.00 0.00 46.65 3.79
1688 1992 0.735978 CCATCAACGCACGTAGAGCA 60.736 55.000 0.00 0.00 46.65 4.26
1689 1993 0.457853 TCCATCAACGCACGTAGAGC 60.458 55.000 0.00 0.00 41.73 4.09
1853 2157 4.493747 CGGCGGTTCTCCTCGGTC 62.494 72.222 0.00 0.00 0.00 4.79
2011 2315 4.813526 CGTGGCTCTCGTCGACGG 62.814 72.222 35.05 25.32 40.29 4.79
2131 2435 0.874390 AACGCATGACATGACACACC 59.126 50.000 19.76 0.00 0.00 4.16
2147 2466 2.457366 AAGCTCCCAACTCACTAACG 57.543 50.000 0.00 0.00 0.00 3.18
2160 2479 3.788672 CCACTGGATGGTAAGCTCC 57.211 57.895 0.00 0.00 44.46 4.70
2179 2498 7.644062 TCCTATAGATACTCCATCAAGTAGGG 58.356 42.308 0.00 0.00 36.23 3.53
2180 2499 9.184523 CTTCCTATAGATACTCCATCAAGTAGG 57.815 40.741 0.00 0.00 36.54 3.18
2232 2559 3.596310 AGTTACTTCCTCTCTTTCGCC 57.404 47.619 0.00 0.00 0.00 5.54
2284 2615 8.615878 TCAAACTAAACATGCATGTACTTACT 57.384 30.769 31.55 13.10 40.80 2.24
2285 2616 9.113876 GTTCAAACTAAACATGCATGTACTTAC 57.886 33.333 31.55 12.68 40.80 2.34
2301 2635 9.849166 CACCAAAAGTTTCTAAGTTCAAACTAA 57.151 29.630 11.45 0.00 41.09 2.24
2391 2729 6.264292 AGACAACACCTTAATTTGTATGCACA 59.736 34.615 0.00 0.00 33.59 4.57
2392 2730 6.677913 AGACAACACCTTAATTTGTATGCAC 58.322 36.000 0.00 0.00 33.59 4.57
2394 2732 7.145323 ACAAGACAACACCTTAATTTGTATGC 58.855 34.615 0.00 0.00 33.59 3.14
2396 2734 8.691797 ACAACAAGACAACACCTTAATTTGTAT 58.308 29.630 0.00 0.00 33.59 2.29
2397 2735 8.057536 ACAACAAGACAACACCTTAATTTGTA 57.942 30.769 0.00 0.00 33.59 2.41
2398 2736 6.930731 ACAACAAGACAACACCTTAATTTGT 58.069 32.000 0.00 0.00 36.16 2.83
2399 2737 7.165154 CGTACAACAAGACAACACCTTAATTTG 59.835 37.037 0.00 0.00 0.00 2.32
2400 2738 7.066043 TCGTACAACAAGACAACACCTTAATTT 59.934 33.333 0.00 0.00 0.00 1.82
2507 2903 3.181486 TGTGTGTGTGTGTGTGTGTTTTT 60.181 39.130 0.00 0.00 0.00 1.94
2508 2904 2.359214 TGTGTGTGTGTGTGTGTGTTTT 59.641 40.909 0.00 0.00 0.00 2.43
2509 2905 1.950216 TGTGTGTGTGTGTGTGTGTTT 59.050 42.857 0.00 0.00 0.00 2.83
2510 2906 1.598882 TGTGTGTGTGTGTGTGTGTT 58.401 45.000 0.00 0.00 0.00 3.32
2511 2907 1.598882 TTGTGTGTGTGTGTGTGTGT 58.401 45.000 0.00 0.00 0.00 3.72
2512 2908 2.917701 ATTGTGTGTGTGTGTGTGTG 57.082 45.000 0.00 0.00 0.00 3.82
2513 2909 3.944650 ACATATTGTGTGTGTGTGTGTGT 59.055 39.130 0.00 0.00 40.28 3.72
2514 2910 4.550577 ACATATTGTGTGTGTGTGTGTG 57.449 40.909 0.00 0.00 40.28 3.82
2515 2911 4.637977 TGAACATATTGTGTGTGTGTGTGT 59.362 37.500 0.00 0.00 41.14 3.72
2516 2912 5.167218 TGAACATATTGTGTGTGTGTGTG 57.833 39.130 0.00 0.00 41.14 3.82
2517 2913 5.356751 AGTTGAACATATTGTGTGTGTGTGT 59.643 36.000 0.00 0.00 41.14 3.72
2518 2914 5.682422 CAGTTGAACATATTGTGTGTGTGTG 59.318 40.000 0.00 0.00 41.14 3.82
2519 2915 5.356751 ACAGTTGAACATATTGTGTGTGTGT 59.643 36.000 0.00 0.00 41.14 3.72
2520 2916 5.682422 CACAGTTGAACATATTGTGTGTGTG 59.318 40.000 7.12 1.21 41.14 3.82
2521 2917 5.221028 CCACAGTTGAACATATTGTGTGTGT 60.221 40.000 12.45 0.00 41.14 3.72
2522 2918 5.008514 TCCACAGTTGAACATATTGTGTGTG 59.991 40.000 12.45 8.31 41.14 3.82
2523 2919 5.129634 TCCACAGTTGAACATATTGTGTGT 58.870 37.500 12.45 0.00 41.14 3.72
2524 2920 5.687770 TCCACAGTTGAACATATTGTGTG 57.312 39.130 12.45 9.47 41.14 3.82
2525 2921 5.278463 GCTTCCACAGTTGAACATATTGTGT 60.278 40.000 12.45 0.00 44.84 3.72
2526 2922 5.048504 AGCTTCCACAGTTGAACATATTGTG 60.049 40.000 8.06 8.06 38.99 3.33
2527 2923 5.072741 AGCTTCCACAGTTGAACATATTGT 58.927 37.500 0.00 0.00 0.00 2.71
2528 2924 5.633830 AGCTTCCACAGTTGAACATATTG 57.366 39.130 0.00 0.00 0.00 1.90
2529 2925 6.151144 GGTAAGCTTCCACAGTTGAACATATT 59.849 38.462 0.00 0.00 0.00 1.28
2530 2926 5.648092 GGTAAGCTTCCACAGTTGAACATAT 59.352 40.000 0.00 0.00 0.00 1.78
2531 2927 5.001232 GGTAAGCTTCCACAGTTGAACATA 58.999 41.667 0.00 0.00 0.00 2.29
2532 2928 3.821033 GGTAAGCTTCCACAGTTGAACAT 59.179 43.478 0.00 0.00 0.00 2.71
2555 2951 1.227674 CTCTCTGCATTACGGGGGC 60.228 63.158 0.00 0.00 0.00 5.80
2575 2971 1.358152 TACCACAGGAACAGGAAGGG 58.642 55.000 0.00 0.00 0.00 3.95
2578 2974 6.636454 AATATCTTACCACAGGAACAGGAA 57.364 37.500 0.00 0.00 0.00 3.36
2579 2975 6.636454 AAATATCTTACCACAGGAACAGGA 57.364 37.500 0.00 0.00 0.00 3.86
2580 2976 6.404734 GCAAAATATCTTACCACAGGAACAGG 60.405 42.308 0.00 0.00 0.00 4.00
2581 2977 6.375455 AGCAAAATATCTTACCACAGGAACAG 59.625 38.462 0.00 0.00 0.00 3.16
2582 2978 6.150976 CAGCAAAATATCTTACCACAGGAACA 59.849 38.462 0.00 0.00 0.00 3.18
2583 2979 6.151144 ACAGCAAAATATCTTACCACAGGAAC 59.849 38.462 0.00 0.00 0.00 3.62
2589 2985 8.263940 TCTTACACAGCAAAATATCTTACCAC 57.736 34.615 0.00 0.00 0.00 4.16
2609 3005 8.481974 TCTCACGCATCTATCTACTATCTTAC 57.518 38.462 0.00 0.00 0.00 2.34
2665 3063 6.670902 ACATTTCCTCTTTGGATGGATTCAAT 59.329 34.615 0.00 0.00 45.68 2.57
2666 3064 6.018469 ACATTTCCTCTTTGGATGGATTCAA 58.982 36.000 0.00 0.00 45.68 2.69
2667 3065 5.582953 ACATTTCCTCTTTGGATGGATTCA 58.417 37.500 0.00 0.00 45.68 2.57
2668 3066 6.406288 GGAACATTTCCTCTTTGGATGGATTC 60.406 42.308 0.00 0.00 46.57 2.52
2669 3067 5.423290 GGAACATTTCCTCTTTGGATGGATT 59.577 40.000 0.00 0.00 46.57 3.01
2670 3068 4.958581 GGAACATTTCCTCTTTGGATGGAT 59.041 41.667 0.00 0.00 46.57 3.41
2671 3069 4.344104 GGAACATTTCCTCTTTGGATGGA 58.656 43.478 0.00 0.00 46.57 3.41
2672 3070 4.725790 GGAACATTTCCTCTTTGGATGG 57.274 45.455 0.00 0.00 46.57 3.51
2694 3092 5.419788 TGCATGTCTCATAGCAAAGGAAAAT 59.580 36.000 0.00 0.00 33.48 1.82
2716 3114 6.598457 AGATTAATACTCTCCATGCATCATGC 59.402 38.462 1.35 1.35 45.29 4.06
2717 3115 8.563123 AAGATTAATACTCTCCATGCATCATG 57.437 34.615 0.00 0.06 41.10 3.07
2718 3116 8.604184 AGAAGATTAATACTCTCCATGCATCAT 58.396 33.333 0.00 0.00 0.00 2.45
2719 3117 7.971201 AGAAGATTAATACTCTCCATGCATCA 58.029 34.615 0.00 0.00 0.00 3.07
2720 3118 8.845413 AAGAAGATTAATACTCTCCATGCATC 57.155 34.615 0.00 0.00 0.00 3.91
2721 3119 7.601886 CGAAGAAGATTAATACTCTCCATGCAT 59.398 37.037 0.00 0.00 0.00 3.96
2722 3120 6.925718 CGAAGAAGATTAATACTCTCCATGCA 59.074 38.462 0.00 0.00 0.00 3.96
2723 3121 7.148641 TCGAAGAAGATTAATACTCTCCATGC 58.851 38.462 0.00 0.00 0.00 4.06
2724 3122 9.190858 CTTCGAAGAAGATTAATACTCTCCATG 57.809 37.037 20.74 0.00 45.90 3.66
2725 3123 7.870445 GCTTCGAAGAAGATTAATACTCTCCAT 59.130 37.037 28.95 0.00 45.90 3.41
2726 3124 7.203910 GCTTCGAAGAAGATTAATACTCTCCA 58.796 38.462 28.95 0.00 45.90 3.86
2727 3125 6.361214 CGCTTCGAAGAAGATTAATACTCTCC 59.639 42.308 28.95 3.57 45.90 3.71
2728 3126 6.129300 GCGCTTCGAAGAAGATTAATACTCTC 60.129 42.308 28.95 3.94 45.90 3.20
2729 3127 5.688176 GCGCTTCGAAGAAGATTAATACTCT 59.312 40.000 28.95 0.00 45.90 3.24
2730 3128 5.688176 AGCGCTTCGAAGAAGATTAATACTC 59.312 40.000 28.95 5.02 45.90 2.59
2731 3129 5.593010 AGCGCTTCGAAGAAGATTAATACT 58.407 37.500 28.95 8.83 45.90 2.12
2732 3130 5.891810 AGCGCTTCGAAGAAGATTAATAC 57.108 39.130 28.95 5.74 45.90 1.89
2747 3145 2.220133 TGTTGTTAAGAACGAGCGCTTC 59.780 45.455 13.26 5.18 0.00 3.86
2753 3151 4.573201 TGTTCCCTTGTTGTTAAGAACGAG 59.427 41.667 20.81 20.81 37.17 4.18
2778 3176 9.278734 GCTTTCTTTTTCTTCTTACGAATATGG 57.721 33.333 0.00 0.00 0.00 2.74
2794 3192 2.288729 GGGACGTGTACGCTTTCTTTTT 59.711 45.455 4.67 0.00 44.43 1.94
2816 3214 3.266636 GCTCTACTCTCTGCCCTTTTTC 58.733 50.000 0.00 0.00 0.00 2.29
2828 3226 2.582052 CCGGATTCTCTGCTCTACTCT 58.418 52.381 0.00 0.00 0.00 3.24
2829 3227 1.000717 GCCGGATTCTCTGCTCTACTC 60.001 57.143 5.05 0.00 0.00 2.59
2830 3228 1.036707 GCCGGATTCTCTGCTCTACT 58.963 55.000 5.05 0.00 0.00 2.57
2831 3229 0.032815 GGCCGGATTCTCTGCTCTAC 59.967 60.000 5.05 0.00 0.00 2.59
2832 3230 1.115930 GGGCCGGATTCTCTGCTCTA 61.116 60.000 5.05 0.00 0.00 2.43
2868 3266 1.317431 TTAGCCTCGCGCCACTCTTA 61.317 55.000 0.00 0.00 38.78 2.10
2877 3285 0.806492 GGACTTTCCTTAGCCTCGCG 60.806 60.000 0.00 0.00 32.53 5.87
2885 3293 3.478857 TTTGCGAGTGGACTTTCCTTA 57.521 42.857 0.00 0.00 37.46 2.69
2961 3370 2.390599 CCGGTTCACATCCTGCACG 61.391 63.158 0.00 0.00 0.00 5.34
3001 3410 5.355350 GGTGAGGTGAAAGTAATTGGAGATG 59.645 44.000 0.00 0.00 0.00 2.90
3021 3430 7.342799 AGTGTTTACCGGAGTATAATAAGGTGA 59.657 37.037 9.46 0.00 33.58 4.02
3024 3433 6.927381 CCAGTGTTTACCGGAGTATAATAAGG 59.073 42.308 9.46 0.00 0.00 2.69
3045 3454 7.118496 ACTACTACTATACACTCGTACCAGT 57.882 40.000 0.00 0.00 33.19 4.00
3064 3480 8.528643 TGCACTTGTTAATGACATACTACTACT 58.471 33.333 0.00 0.00 38.26 2.57
3065 3481 8.697846 TGCACTTGTTAATGACATACTACTAC 57.302 34.615 0.00 0.00 38.26 2.73
3066 3482 8.528643 ACTGCACTTGTTAATGACATACTACTA 58.471 33.333 0.00 0.00 38.26 1.82
3067 3483 7.331934 CACTGCACTTGTTAATGACATACTACT 59.668 37.037 0.00 0.00 38.26 2.57
3068 3484 7.456253 CACTGCACTTGTTAATGACATACTAC 58.544 38.462 0.00 0.00 38.26 2.73
3069 3485 6.092122 GCACTGCACTTGTTAATGACATACTA 59.908 38.462 0.00 0.00 38.26 1.82
3070 3486 5.106555 GCACTGCACTTGTTAATGACATACT 60.107 40.000 0.00 0.00 38.26 2.12
3071 3487 5.088739 GCACTGCACTTGTTAATGACATAC 58.911 41.667 0.00 0.00 38.26 2.39
3072 3488 4.142924 CGCACTGCACTTGTTAATGACATA 60.143 41.667 1.11 0.00 38.26 2.29
3073 3489 3.365264 CGCACTGCACTTGTTAATGACAT 60.365 43.478 1.11 0.00 38.26 3.06
3074 3490 2.032117 CGCACTGCACTTGTTAATGACA 60.032 45.455 1.11 0.00 36.19 3.58
3075 3491 2.032030 ACGCACTGCACTTGTTAATGAC 60.032 45.455 1.11 0.00 0.00 3.06
3076 3492 2.032117 CACGCACTGCACTTGTTAATGA 60.032 45.455 1.11 0.00 0.00 2.57
3085 3501 0.033920 TGAGAATCACGCACTGCACT 59.966 50.000 1.11 0.00 42.56 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.