Multiple sequence alignment - TraesCS1A01G219100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G219100 chr1A 100.000 4416 0 0 1 4416 387832607 387837022 0.000000e+00 8155
1 TraesCS1A01G219100 chr1B 94.181 3609 146 30 846 4416 418068937 418072519 0.000000e+00 5443
2 TraesCS1A01G219100 chr1B 84.055 577 41 19 325 852 418063073 418063647 3.940000e-140 508
3 TraesCS1A01G219100 chr1D 93.723 3027 126 34 599 3584 308453414 308456417 0.000000e+00 4479
4 TraesCS1A01G219100 chr1D 90.934 728 36 17 3649 4362 308456591 308457302 0.000000e+00 952
5 TraesCS1A01G219100 chr1D 100.000 57 0 0 3564 3620 308456532 308456588 6.040000e-19 106
6 TraesCS1A01G219100 chr7A 84.568 162 19 3 3840 3998 41966360 41966518 5.910000e-34 156
7 TraesCS1A01G219100 chr7A 84.375 160 19 2 3837 3993 206959856 206960012 7.650000e-33 152
8 TraesCS1A01G219100 chr7A 87.500 96 8 3 138 229 625052743 625052838 1.680000e-19 108
9 TraesCS1A01G219100 chr6D 85.000 160 17 4 3840 3995 410398279 410398435 5.910000e-34 156
10 TraesCS1A01G219100 chr6D 84.615 156 18 3 3840 3992 12492237 12492389 2.750000e-32 150
11 TraesCS1A01G219100 chr7D 84.375 160 19 2 3837 3993 197927005 197927161 7.650000e-33 152
12 TraesCS1A01G219100 chr7D 83.929 168 15 6 3840 3998 42644592 42644756 2.750000e-32 150
13 TraesCS1A01G219100 chr2D 84.375 160 18 3 3839 3994 88290054 88290210 2.750000e-32 150


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G219100 chr1A 387832607 387837022 4415 False 8155.000000 8155 100.000000 1 4416 1 chr1A.!!$F1 4415
1 TraesCS1A01G219100 chr1B 418068937 418072519 3582 False 5443.000000 5443 94.181000 846 4416 1 chr1B.!!$F2 3570
2 TraesCS1A01G219100 chr1B 418063073 418063647 574 False 508.000000 508 84.055000 325 852 1 chr1B.!!$F1 527
3 TraesCS1A01G219100 chr1D 308453414 308457302 3888 False 1845.666667 4479 94.885667 599 4362 3 chr1D.!!$F1 3763

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
260 261 0.041576 GGTTTCACCGAACTTCACGC 60.042 55.0 0.00 0.0 0.00 5.34 F
602 621 0.109226 CCTCGTCGTCACCTTCCTTC 60.109 60.0 0.00 0.0 0.00 3.46 F
1940 2039 0.034059 CCGTGGCATGGAGATACCTC 59.966 60.0 21.47 0.0 39.86 3.85 F
2864 2968 0.178995 TGGAGTGAACCAATGCAGCA 60.179 50.0 0.00 0.0 36.96 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1341 1431 1.439644 GATGACCAGCTCGGAGGAC 59.560 63.158 7.2 0.0 38.63 3.85 R
2344 2448 0.032952 TCTACAGACAAAGGCGCGTT 59.967 50.000 10.0 10.0 0.00 4.84 R
3004 3108 0.758123 CTCTGCCTTGATCTCCCTCC 59.242 60.000 0.0 0.0 0.00 4.30 R
4125 4369 1.204704 GGTGCCCCTTATTGCAGTTTC 59.795 52.381 0.0 0.0 38.34 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.975246 CGCCTTAAAGGTGCGGAA 58.025 55.556 0.00 0.00 44.29 4.30
30 31 2.477880 CGCCTTAAAGGTGCGGAAT 58.522 52.632 0.00 0.00 44.29 3.01
31 32 1.658994 CGCCTTAAAGGTGCGGAATA 58.341 50.000 0.00 0.00 44.29 1.75
32 33 1.597663 CGCCTTAAAGGTGCGGAATAG 59.402 52.381 0.00 0.00 44.29 1.73
33 34 1.947456 GCCTTAAAGGTGCGGAATAGG 59.053 52.381 0.00 0.00 37.80 2.57
34 35 2.420967 GCCTTAAAGGTGCGGAATAGGA 60.421 50.000 0.00 0.00 37.80 2.94
35 36 3.747708 GCCTTAAAGGTGCGGAATAGGAT 60.748 47.826 0.00 0.00 37.80 3.24
36 37 4.065789 CCTTAAAGGTGCGGAATAGGATC 58.934 47.826 0.00 0.00 0.00 3.36
37 38 2.240493 AAAGGTGCGGAATAGGATCG 57.760 50.000 0.00 0.00 0.00 3.69
38 39 0.393077 AAGGTGCGGAATAGGATCGG 59.607 55.000 0.00 0.00 0.00 4.18
39 40 0.759436 AGGTGCGGAATAGGATCGGT 60.759 55.000 0.00 0.00 0.00 4.69
40 41 0.600255 GGTGCGGAATAGGATCGGTG 60.600 60.000 0.00 0.00 0.00 4.94
41 42 1.069090 TGCGGAATAGGATCGGTGC 59.931 57.895 0.00 0.00 0.00 5.01
42 43 1.668151 GCGGAATAGGATCGGTGCC 60.668 63.158 0.00 0.00 0.00 5.01
43 44 1.372997 CGGAATAGGATCGGTGCCG 60.373 63.158 3.94 3.94 41.35 5.69
59 60 1.913317 GCCGAATGCACCAGAAATTC 58.087 50.000 0.00 0.00 40.77 2.17
60 61 1.469767 GCCGAATGCACCAGAAATTCC 60.470 52.381 0.00 0.00 40.77 3.01
61 62 1.202177 CCGAATGCACCAGAAATTCCG 60.202 52.381 0.00 0.00 0.00 4.30
62 63 1.468520 CGAATGCACCAGAAATTCCGT 59.531 47.619 0.00 0.00 0.00 4.69
63 64 2.095263 CGAATGCACCAGAAATTCCGTT 60.095 45.455 0.00 0.00 0.00 4.44
64 65 3.244976 GAATGCACCAGAAATTCCGTTG 58.755 45.455 0.00 0.00 0.00 4.10
65 66 1.974265 TGCACCAGAAATTCCGTTGA 58.026 45.000 0.00 0.00 0.00 3.18
66 67 2.513753 TGCACCAGAAATTCCGTTGAT 58.486 42.857 0.00 0.00 0.00 2.57
67 68 2.487762 TGCACCAGAAATTCCGTTGATC 59.512 45.455 0.00 0.00 0.00 2.92
68 69 2.476185 GCACCAGAAATTCCGTTGATCG 60.476 50.000 0.00 0.00 39.52 3.69
78 79 2.359792 CGTTGATCGGTGGAGAACG 58.640 57.895 0.00 0.00 36.35 3.95
79 80 0.388134 CGTTGATCGGTGGAGAACGT 60.388 55.000 0.00 0.00 37.27 3.99
80 81 1.135603 CGTTGATCGGTGGAGAACGTA 60.136 52.381 0.00 0.00 37.27 3.57
81 82 2.257034 GTTGATCGGTGGAGAACGTAC 58.743 52.381 0.00 0.00 0.00 3.67
82 83 0.813184 TGATCGGTGGAGAACGTACC 59.187 55.000 0.00 0.00 0.00 3.34
83 84 1.101331 GATCGGTGGAGAACGTACCT 58.899 55.000 3.11 0.00 32.28 3.08
84 85 1.065251 GATCGGTGGAGAACGTACCTC 59.935 57.143 8.82 8.82 32.28 3.85
85 86 0.250858 TCGGTGGAGAACGTACCTCA 60.251 55.000 16.53 0.00 32.48 3.86
86 87 0.815734 CGGTGGAGAACGTACCTCAT 59.184 55.000 16.53 0.00 32.48 2.90
87 88 1.469251 CGGTGGAGAACGTACCTCATG 60.469 57.143 16.53 0.00 32.48 3.07
88 89 1.822990 GGTGGAGAACGTACCTCATGA 59.177 52.381 16.53 0.00 32.48 3.07
89 90 2.431057 GGTGGAGAACGTACCTCATGAT 59.569 50.000 16.53 0.00 32.48 2.45
90 91 3.118738 GGTGGAGAACGTACCTCATGATT 60.119 47.826 16.53 0.00 32.48 2.57
91 92 3.865745 GTGGAGAACGTACCTCATGATTG 59.134 47.826 16.53 0.00 32.48 2.67
92 93 3.118775 TGGAGAACGTACCTCATGATTGG 60.119 47.826 16.53 0.00 32.48 3.16
93 94 3.132289 GGAGAACGTACCTCATGATTGGA 59.868 47.826 16.53 0.00 32.48 3.53
94 95 4.382685 GGAGAACGTACCTCATGATTGGAA 60.383 45.833 16.53 0.00 32.48 3.53
95 96 4.504858 AGAACGTACCTCATGATTGGAAC 58.495 43.478 7.95 0.46 0.00 3.62
96 97 3.973206 ACGTACCTCATGATTGGAACA 57.027 42.857 7.95 0.00 0.00 3.18
113 114 6.262193 TGGAACAAAATAAAATCCGGTCTC 57.738 37.500 0.00 0.00 31.92 3.36
114 115 5.770663 TGGAACAAAATAAAATCCGGTCTCA 59.229 36.000 0.00 0.00 31.92 3.27
115 116 6.090783 GGAACAAAATAAAATCCGGTCTCAC 58.909 40.000 0.00 0.00 0.00 3.51
116 117 5.638596 ACAAAATAAAATCCGGTCTCACC 57.361 39.130 0.00 0.00 34.05 4.02
117 118 4.461431 ACAAAATAAAATCCGGTCTCACCC 59.539 41.667 0.00 0.00 33.75 4.61
118 119 4.586306 AAATAAAATCCGGTCTCACCCT 57.414 40.909 0.00 0.00 33.75 4.34
119 120 4.586306 AATAAAATCCGGTCTCACCCTT 57.414 40.909 0.00 0.00 33.75 3.95
120 121 2.971901 AAAATCCGGTCTCACCCTTT 57.028 45.000 0.00 0.00 33.75 3.11
121 122 5.703730 ATAAAATCCGGTCTCACCCTTTA 57.296 39.130 0.00 0.00 33.75 1.85
122 123 4.376225 AAAATCCGGTCTCACCCTTTAA 57.624 40.909 0.00 0.00 33.75 1.52
123 124 4.376225 AAATCCGGTCTCACCCTTTAAA 57.624 40.909 0.00 0.00 33.75 1.52
124 125 4.376225 AATCCGGTCTCACCCTTTAAAA 57.624 40.909 0.00 0.00 33.75 1.52
125 126 4.586306 ATCCGGTCTCACCCTTTAAAAT 57.414 40.909 0.00 0.00 33.75 1.82
126 127 3.946606 TCCGGTCTCACCCTTTAAAATC 58.053 45.455 0.00 0.00 33.75 2.17
127 128 3.328343 TCCGGTCTCACCCTTTAAAATCA 59.672 43.478 0.00 0.00 33.75 2.57
128 129 4.018779 TCCGGTCTCACCCTTTAAAATCAT 60.019 41.667 0.00 0.00 33.75 2.45
129 130 4.096382 CCGGTCTCACCCTTTAAAATCATG 59.904 45.833 0.00 0.00 33.75 3.07
130 131 4.941263 CGGTCTCACCCTTTAAAATCATGA 59.059 41.667 0.00 0.00 33.75 3.07
131 132 5.065218 CGGTCTCACCCTTTAAAATCATGAG 59.935 44.000 0.09 10.18 33.75 2.90
132 133 5.358160 GGTCTCACCCTTTAAAATCATGAGG 59.642 44.000 0.09 0.00 34.26 3.86
191 192 2.672961 CGTAGGATGAAGTGGAAGCA 57.327 50.000 0.00 0.00 0.00 3.91
192 193 2.271800 CGTAGGATGAAGTGGAAGCAC 58.728 52.381 0.00 0.00 0.00 4.40
193 194 2.353704 CGTAGGATGAAGTGGAAGCACA 60.354 50.000 0.00 0.00 0.00 4.57
194 195 2.486472 AGGATGAAGTGGAAGCACAG 57.514 50.000 0.00 0.00 0.00 3.66
195 196 1.980765 AGGATGAAGTGGAAGCACAGA 59.019 47.619 0.00 0.00 0.00 3.41
196 197 2.575279 AGGATGAAGTGGAAGCACAGAT 59.425 45.455 0.00 0.00 0.00 2.90
197 198 2.681848 GGATGAAGTGGAAGCACAGATG 59.318 50.000 0.00 0.00 0.00 2.90
198 199 3.603532 GATGAAGTGGAAGCACAGATGA 58.396 45.455 0.00 0.00 0.00 2.92
199 200 3.708403 TGAAGTGGAAGCACAGATGAT 57.292 42.857 0.00 0.00 0.00 2.45
200 201 4.824479 TGAAGTGGAAGCACAGATGATA 57.176 40.909 0.00 0.00 0.00 2.15
201 202 4.763073 TGAAGTGGAAGCACAGATGATAG 58.237 43.478 0.00 0.00 0.00 2.08
202 203 3.191078 AGTGGAAGCACAGATGATAGC 57.809 47.619 0.00 0.00 0.00 2.97
203 204 2.502947 AGTGGAAGCACAGATGATAGCA 59.497 45.455 0.00 0.00 0.00 3.49
204 205 3.136077 AGTGGAAGCACAGATGATAGCAT 59.864 43.478 0.00 0.00 37.47 3.79
205 206 3.250280 GTGGAAGCACAGATGATAGCATG 59.750 47.826 0.00 0.00 34.11 4.06
206 207 2.812591 GGAAGCACAGATGATAGCATGG 59.187 50.000 0.00 0.00 34.11 3.66
207 208 2.563261 AGCACAGATGATAGCATGGG 57.437 50.000 0.00 0.00 34.11 4.00
208 209 2.052468 AGCACAGATGATAGCATGGGA 58.948 47.619 0.00 0.00 34.11 4.37
209 210 2.038689 AGCACAGATGATAGCATGGGAG 59.961 50.000 0.00 0.00 34.11 4.30
210 211 2.874861 GCACAGATGATAGCATGGGAGG 60.875 54.545 0.00 0.00 34.11 4.30
211 212 2.636403 CACAGATGATAGCATGGGAGGA 59.364 50.000 0.00 0.00 34.11 3.71
212 213 2.905085 ACAGATGATAGCATGGGAGGAG 59.095 50.000 0.00 0.00 34.11 3.69
213 214 1.907936 AGATGATAGCATGGGAGGAGC 59.092 52.381 0.00 0.00 34.11 4.70
214 215 1.627329 GATGATAGCATGGGAGGAGCA 59.373 52.381 0.00 0.00 34.11 4.26
215 216 1.054231 TGATAGCATGGGAGGAGCAG 58.946 55.000 0.00 0.00 0.00 4.24
216 217 0.324285 GATAGCATGGGAGGAGCAGG 59.676 60.000 0.00 0.00 0.00 4.85
217 218 1.776975 ATAGCATGGGAGGAGCAGGC 61.777 60.000 0.00 0.00 0.00 4.85
218 219 4.119363 GCATGGGAGGAGCAGGCA 62.119 66.667 0.00 0.00 0.00 4.75
219 220 2.679092 CATGGGAGGAGCAGGCAA 59.321 61.111 0.00 0.00 0.00 4.52
220 221 1.453379 CATGGGAGGAGCAGGCAAG 60.453 63.158 0.00 0.00 0.00 4.01
221 222 3.355957 ATGGGAGGAGCAGGCAAGC 62.356 63.158 0.00 0.00 0.00 4.01
222 223 4.811364 GGGAGGAGCAGGCAAGCC 62.811 72.222 2.02 2.02 34.23 4.35
224 225 4.087892 GAGGAGCAGGCAAGCCGA 62.088 66.667 5.28 0.00 41.95 5.54
225 226 3.612247 GAGGAGCAGGCAAGCCGAA 62.612 63.158 5.28 0.00 41.95 4.30
226 227 2.439156 GGAGCAGGCAAGCCGAAT 60.439 61.111 5.28 0.00 41.95 3.34
227 228 2.476320 GGAGCAGGCAAGCCGAATC 61.476 63.158 5.28 4.84 41.95 2.52
228 229 2.439156 AGCAGGCAAGCCGAATCC 60.439 61.111 5.28 0.00 41.95 3.01
229 230 3.521796 GCAGGCAAGCCGAATCCC 61.522 66.667 5.28 0.00 41.95 3.85
230 231 3.204827 CAGGCAAGCCGAATCCCG 61.205 66.667 5.28 0.00 41.95 5.14
231 232 3.717294 AGGCAAGCCGAATCCCGT 61.717 61.111 5.28 0.00 41.95 5.28
232 233 3.508840 GGCAAGCCGAATCCCGTG 61.509 66.667 0.00 0.00 36.31 4.94
233 234 3.508840 GCAAGCCGAATCCCGTGG 61.509 66.667 0.00 0.00 36.31 4.94
234 235 2.046314 CAAGCCGAATCCCGTGGT 60.046 61.111 0.00 0.00 36.31 4.16
235 236 1.674322 CAAGCCGAATCCCGTGGTT 60.674 57.895 0.00 0.00 36.31 3.67
236 237 1.674322 AAGCCGAATCCCGTGGTTG 60.674 57.895 0.00 0.00 36.31 3.77
237 238 3.131478 GCCGAATCCCGTGGTTGG 61.131 66.667 0.00 0.00 36.31 3.77
246 247 3.666253 CGTGGTTGGGCCGGTTTC 61.666 66.667 1.90 0.00 41.21 2.78
247 248 2.519780 GTGGTTGGGCCGGTTTCA 60.520 61.111 1.90 0.00 41.21 2.69
248 249 2.519780 TGGTTGGGCCGGTTTCAC 60.520 61.111 1.90 0.00 41.21 3.18
249 250 3.299977 GGTTGGGCCGGTTTCACC 61.300 66.667 1.90 0.77 34.05 4.02
260 261 0.041576 GGTTTCACCGAACTTCACGC 60.042 55.000 0.00 0.00 0.00 5.34
261 262 0.382636 GTTTCACCGAACTTCACGCG 60.383 55.000 3.53 3.53 0.00 6.01
265 266 2.125673 CCGAACTTCACGCGGGAT 60.126 61.111 14.07 0.00 41.29 3.85
266 267 2.452813 CCGAACTTCACGCGGGATG 61.453 63.158 21.41 21.41 41.29 3.51
267 268 2.452813 CGAACTTCACGCGGGATGG 61.453 63.158 25.72 17.78 0.00 3.51
268 269 1.079405 GAACTTCACGCGGGATGGA 60.079 57.895 25.72 5.07 0.00 3.41
269 270 0.672401 GAACTTCACGCGGGATGGAA 60.672 55.000 25.72 12.76 0.00 3.53
270 271 0.250553 AACTTCACGCGGGATGGAAA 60.251 50.000 25.72 4.27 0.00 3.13
271 272 0.953960 ACTTCACGCGGGATGGAAAC 60.954 55.000 25.72 0.00 0.00 2.78
272 273 0.673644 CTTCACGCGGGATGGAAACT 60.674 55.000 14.07 0.00 0.00 2.66
273 274 0.953471 TTCACGCGGGATGGAAACTG 60.953 55.000 14.07 0.00 0.00 3.16
274 275 2.046314 ACGCGGGATGGAAACTGG 60.046 61.111 12.47 0.00 0.00 4.00
275 276 2.824041 CGCGGGATGGAAACTGGG 60.824 66.667 0.00 0.00 0.00 4.45
276 277 3.140814 GCGGGATGGAAACTGGGC 61.141 66.667 0.00 0.00 0.00 5.36
277 278 2.440247 CGGGATGGAAACTGGGCC 60.440 66.667 0.00 0.00 0.00 5.80
278 279 2.042944 GGGATGGAAACTGGGCCC 60.043 66.667 17.59 17.59 0.00 5.80
279 280 2.770130 GGATGGAAACTGGGCCCA 59.230 61.111 26.67 26.67 0.00 5.36
280 281 1.078347 GGATGGAAACTGGGCCCAA 59.922 57.895 28.29 10.56 33.15 4.12
281 282 0.544120 GGATGGAAACTGGGCCCAAA 60.544 55.000 28.29 3.08 33.15 3.28
282 283 1.347062 GATGGAAACTGGGCCCAAAA 58.653 50.000 28.29 8.07 33.15 2.44
283 284 1.001974 GATGGAAACTGGGCCCAAAAC 59.998 52.381 28.29 16.75 33.15 2.43
284 285 1.051556 TGGAAACTGGGCCCAAAACC 61.052 55.000 28.29 24.59 0.00 3.27
293 294 1.961793 GGCCCAAAACCCAAACTTTC 58.038 50.000 0.00 0.00 0.00 2.62
294 295 1.210722 GGCCCAAAACCCAAACTTTCA 59.789 47.619 0.00 0.00 0.00 2.69
295 296 2.356227 GGCCCAAAACCCAAACTTTCAA 60.356 45.455 0.00 0.00 0.00 2.69
296 297 2.942376 GCCCAAAACCCAAACTTTCAAG 59.058 45.455 0.00 0.00 0.00 3.02
297 298 3.540617 CCCAAAACCCAAACTTTCAAGG 58.459 45.455 0.00 0.00 0.00 3.61
298 299 3.198853 CCCAAAACCCAAACTTTCAAGGA 59.801 43.478 0.00 0.00 0.00 3.36
299 300 4.323868 CCCAAAACCCAAACTTTCAAGGAA 60.324 41.667 0.00 0.00 0.00 3.36
300 301 5.249420 CCAAAACCCAAACTTTCAAGGAAA 58.751 37.500 0.00 0.00 0.00 3.13
301 302 5.707764 CCAAAACCCAAACTTTCAAGGAAAA 59.292 36.000 0.00 0.00 30.84 2.29
302 303 6.128035 CCAAAACCCAAACTTTCAAGGAAAAG 60.128 38.462 0.00 0.00 41.15 2.27
303 304 6.367374 AAACCCAAACTTTCAAGGAAAAGA 57.633 33.333 3.56 0.00 38.30 2.52
304 305 6.367374 AACCCAAACTTTCAAGGAAAAGAA 57.633 33.333 3.56 0.00 38.30 2.52
305 306 5.977635 ACCCAAACTTTCAAGGAAAAGAAG 58.022 37.500 3.56 0.00 38.30 2.85
306 307 4.811024 CCCAAACTTTCAAGGAAAAGAAGC 59.189 41.667 3.56 0.00 38.30 3.86
307 308 5.395657 CCCAAACTTTCAAGGAAAAGAAGCT 60.396 40.000 3.56 0.00 38.30 3.74
308 309 5.521372 CCAAACTTTCAAGGAAAAGAAGCTG 59.479 40.000 3.56 0.00 38.30 4.24
309 310 4.313277 ACTTTCAAGGAAAAGAAGCTGC 57.687 40.909 3.56 0.00 38.30 5.25
310 311 3.701040 ACTTTCAAGGAAAAGAAGCTGCA 59.299 39.130 1.02 0.00 38.30 4.41
311 312 4.343239 ACTTTCAAGGAAAAGAAGCTGCAT 59.657 37.500 1.02 0.00 38.30 3.96
312 313 3.928727 TCAAGGAAAAGAAGCTGCATG 57.071 42.857 1.02 0.00 0.00 4.06
313 314 3.225104 TCAAGGAAAAGAAGCTGCATGT 58.775 40.909 1.02 0.00 0.00 3.21
314 315 4.397420 TCAAGGAAAAGAAGCTGCATGTA 58.603 39.130 1.02 0.00 0.00 2.29
315 316 4.826733 TCAAGGAAAAGAAGCTGCATGTAA 59.173 37.500 1.02 0.00 0.00 2.41
316 317 5.301551 TCAAGGAAAAGAAGCTGCATGTAAA 59.698 36.000 1.02 0.00 0.00 2.01
317 318 5.990120 AGGAAAAGAAGCTGCATGTAAAT 57.010 34.783 1.02 0.00 0.00 1.40
318 319 6.350629 AGGAAAAGAAGCTGCATGTAAATT 57.649 33.333 1.02 0.00 0.00 1.82
319 320 6.393171 AGGAAAAGAAGCTGCATGTAAATTC 58.607 36.000 1.02 0.00 0.00 2.17
320 321 6.015180 AGGAAAAGAAGCTGCATGTAAATTCA 60.015 34.615 1.02 0.00 0.00 2.57
321 322 6.646240 GGAAAAGAAGCTGCATGTAAATTCAA 59.354 34.615 1.02 0.00 0.00 2.69
322 323 7.359514 GGAAAAGAAGCTGCATGTAAATTCAAC 60.360 37.037 1.02 0.00 0.00 3.18
323 324 5.972107 AGAAGCTGCATGTAAATTCAACT 57.028 34.783 1.02 0.00 0.00 3.16
324 325 7.452880 AAGAAGCTGCATGTAAATTCAACTA 57.547 32.000 1.02 0.00 0.00 2.24
325 326 7.452880 AGAAGCTGCATGTAAATTCAACTAA 57.547 32.000 1.02 0.00 0.00 2.24
326 327 7.885297 AGAAGCTGCATGTAAATTCAACTAAA 58.115 30.769 1.02 0.00 0.00 1.85
327 328 8.359642 AGAAGCTGCATGTAAATTCAACTAAAA 58.640 29.630 1.02 0.00 0.00 1.52
328 329 8.885494 AAGCTGCATGTAAATTCAACTAAAAA 57.115 26.923 1.02 0.00 0.00 1.94
361 362 1.847798 TAAATGGTGGTCTGCGCCCT 61.848 55.000 4.18 0.00 0.00 5.19
384 387 0.319555 TTTCGAGGAAGTGGTCTGCG 60.320 55.000 0.00 0.00 0.00 5.18
422 425 1.144057 CCAGCACTACATCGGGTCC 59.856 63.158 0.00 0.00 0.00 4.46
424 427 0.179100 CAGCACTACATCGGGTCCAG 60.179 60.000 0.00 0.00 0.00 3.86
456 473 1.090052 GCACGCGAAAATCTAGGCCT 61.090 55.000 15.93 11.78 0.00 5.19
457 474 1.369625 CACGCGAAAATCTAGGCCTT 58.630 50.000 12.58 0.00 0.00 4.35
458 475 1.062587 CACGCGAAAATCTAGGCCTTG 59.937 52.381 12.58 9.98 0.00 3.61
507 524 1.448540 GATGTCGTGGTGAGGGCTG 60.449 63.158 0.00 0.00 0.00 4.85
552 570 3.766591 TGAAACCTCTCTCTCCTCACATC 59.233 47.826 0.00 0.00 0.00 3.06
557 575 3.298619 CTCTCTCTCCTCACATCACCAT 58.701 50.000 0.00 0.00 0.00 3.55
561 579 3.196469 TCTCTCCTCACATCACCATTCAC 59.804 47.826 0.00 0.00 0.00 3.18
562 580 2.237143 TCTCCTCACATCACCATTCACC 59.763 50.000 0.00 0.00 0.00 4.02
563 581 1.984424 TCCTCACATCACCATTCACCA 59.016 47.619 0.00 0.00 0.00 4.17
565 583 2.290514 CCTCACATCACCATTCACCAGT 60.291 50.000 0.00 0.00 0.00 4.00
566 584 3.005554 CTCACATCACCATTCACCAGTC 58.994 50.000 0.00 0.00 0.00 3.51
567 585 2.371510 TCACATCACCATTCACCAGTCA 59.628 45.455 0.00 0.00 0.00 3.41
568 586 2.745821 CACATCACCATTCACCAGTCAG 59.254 50.000 0.00 0.00 0.00 3.51
599 618 1.212229 GTCCTCGTCGTCACCTTCC 59.788 63.158 0.00 0.00 0.00 3.46
602 621 0.109226 CCTCGTCGTCACCTTCCTTC 60.109 60.000 0.00 0.00 0.00 3.46
607 631 2.669240 GTCACCTTCCTTCCGGGG 59.331 66.667 0.00 0.00 35.33 5.73
634 658 4.746309 GCATGCTGGCCTCCACCA 62.746 66.667 11.37 0.00 38.29 4.17
683 726 2.028561 ATGCCCCATGTTTTTGAGGT 57.971 45.000 0.00 0.00 0.00 3.85
717 760 0.615331 TGGAGGAGCCATTGACAGTC 59.385 55.000 0.00 0.00 43.33 3.51
755 798 1.228184 CCAGCATCCAGATCCAGGC 60.228 63.158 0.00 0.00 0.00 4.85
770 813 2.579738 GGCCGACCTGGTCTTCTC 59.420 66.667 23.49 9.91 40.15 2.87
789 832 2.433970 CTCCAGAGAGGGAAGGTGATTC 59.566 54.545 0.00 0.00 36.27 2.52
834 887 5.474532 GCCTTGATCCAGTATGCATTGATTA 59.525 40.000 3.54 0.00 31.97 1.75
878 958 3.106242 TCCGGTATGGATTGATTGACG 57.894 47.619 0.00 0.00 43.74 4.35
884 964 5.107337 CGGTATGGATTGATTGACGATTGAG 60.107 44.000 0.00 0.00 0.00 3.02
893 978 3.784701 TTGACGATTGAGTAGAGGCTC 57.215 47.619 6.34 6.34 36.12 4.70
927 1012 2.357952 GGGTTTTAATCCAGATCGGCAC 59.642 50.000 0.00 0.00 33.14 5.01
967 1052 5.399892 CGAGTAGATTTTCAGATTAGTCGGC 59.600 44.000 0.00 0.00 34.96 5.54
1103 1188 4.383602 CGCGCAAAACCTCACCCG 62.384 66.667 8.75 0.00 0.00 5.28
1123 1208 2.227388 CGGCTGCATTTCTTCTTCTTGT 59.773 45.455 0.50 0.00 0.00 3.16
1126 1211 5.294306 CGGCTGCATTTCTTCTTCTTGTATA 59.706 40.000 0.50 0.00 0.00 1.47
1127 1212 6.510799 CGGCTGCATTTCTTCTTCTTGTATAG 60.511 42.308 0.50 0.00 0.00 1.31
1128 1213 6.317391 GGCTGCATTTCTTCTTCTTGTATAGT 59.683 38.462 0.50 0.00 0.00 2.12
1129 1214 7.495934 GGCTGCATTTCTTCTTCTTGTATAGTA 59.504 37.037 0.50 0.00 0.00 1.82
1260 1350 2.524394 ATGATAGAGGGCGCCGGT 60.524 61.111 22.54 10.59 0.00 5.28
1621 1711 2.435586 CGACCAGCAGCCTGAAGG 60.436 66.667 0.00 0.00 41.77 3.46
1716 1806 2.440569 GCAGCTCGAGAAGTGCGTC 61.441 63.158 18.75 0.00 43.54 5.19
1749 1839 3.553095 GAAGAACAGCGCAGGGGGT 62.553 63.158 11.47 0.00 0.00 4.95
1764 1854 1.418264 GGGGGTTGCCTCTTCTATCTC 59.582 57.143 0.00 0.00 0.00 2.75
1798 1892 4.581868 TCTGCACAATGATTCATGAGACA 58.418 39.130 0.00 0.78 0.00 3.41
1799 1893 5.005094 TCTGCACAATGATTCATGAGACAA 58.995 37.500 0.00 0.00 0.00 3.18
1800 1894 5.123344 TCTGCACAATGATTCATGAGACAAG 59.877 40.000 0.00 6.70 0.00 3.16
1801 1895 4.157105 TGCACAATGATTCATGAGACAAGG 59.843 41.667 0.00 6.16 0.00 3.61
1823 1917 9.578576 CAAGGAAGGAATATGAATGAATCCTAA 57.421 33.333 0.00 0.00 39.56 2.69
1824 1918 9.804977 AAGGAAGGAATATGAATGAATCCTAAG 57.195 33.333 0.00 0.00 39.56 2.18
1825 1919 8.953665 AGGAAGGAATATGAATGAATCCTAAGT 58.046 33.333 0.00 0.00 39.56 2.24
1888 1987 9.224058 GTCTAACACGTTTAGTTTTATTTTGCA 57.776 29.630 13.52 0.00 0.00 4.08
1940 2039 0.034059 CCGTGGCATGGAGATACCTC 59.966 60.000 21.47 0.00 39.86 3.85
1984 2083 0.842635 GGGACAGGAAGCTGATGGAT 59.157 55.000 0.00 0.00 0.00 3.41
1988 2087 4.526970 GGACAGGAAGCTGATGGATAAAA 58.473 43.478 0.00 0.00 0.00 1.52
2017 2116 5.183530 AGATGGACATGAAGAACAATGGA 57.816 39.130 0.00 0.00 0.00 3.41
2069 2168 7.079451 TCTCTTGGAGTTTTTCCTCTGTAAT 57.921 36.000 0.00 0.00 46.92 1.89
2070 2169 8.202461 TCTCTTGGAGTTTTTCCTCTGTAATA 57.798 34.615 0.00 0.00 46.92 0.98
2071 2170 8.095169 TCTCTTGGAGTTTTTCCTCTGTAATAC 58.905 37.037 0.00 0.00 46.92 1.89
2176 2277 1.453745 GATCATTTCCAGGGGCGCA 60.454 57.895 10.83 0.00 0.00 6.09
2344 2448 7.039363 CCCCCTCTAATGATTTTGTGTGTTTTA 60.039 37.037 0.00 0.00 0.00 1.52
2483 2587 1.986698 CGGAGAAGCCAGCAAAAATG 58.013 50.000 0.00 0.00 35.94 2.32
2545 2649 2.501316 TGATGGTGACGAGATGGATGTT 59.499 45.455 0.00 0.00 0.00 2.71
2709 2813 2.092882 GTTACAGAGCCACGCGGAC 61.093 63.158 12.47 0.00 0.00 4.79
2712 2816 4.056125 CAGAGCCACGCGGACTCA 62.056 66.667 21.92 0.00 37.70 3.41
2749 2853 1.128692 GTGACACGGAATAGCAGCAAC 59.871 52.381 0.00 0.00 0.00 4.17
2759 2863 2.549064 TAGCAGCAACAGCAAAGAGA 57.451 45.000 0.00 0.00 0.00 3.10
2764 2868 0.595095 GCAACAGCAAAGAGACTGGG 59.405 55.000 0.00 0.00 38.25 4.45
2864 2968 0.178995 TGGAGTGAACCAATGCAGCA 60.179 50.000 0.00 0.00 36.96 4.41
2907 3011 2.365582 ACCAACATCGCCTAATGTTCC 58.634 47.619 4.31 0.00 45.68 3.62
2969 3073 2.761208 ACGGAAGAACCTGGAGATGTAG 59.239 50.000 0.00 0.00 36.31 2.74
2980 3084 3.609853 TGGAGATGTAGCAACCAATGTC 58.390 45.455 0.00 0.00 0.00 3.06
2991 3095 1.463674 ACCAATGTCTCCGGAAATGC 58.536 50.000 5.23 0.00 0.00 3.56
3000 3104 4.081142 TGTCTCCGGAAATGCTTCAGATAA 60.081 41.667 5.23 0.00 32.75 1.75
3004 3108 3.187227 CCGGAAATGCTTCAGATAATCCG 59.813 47.826 0.00 4.02 46.00 4.18
3021 3125 1.445095 CGGAGGGAGATCAAGGCAG 59.555 63.158 0.00 0.00 0.00 4.85
3030 3134 1.980765 AGATCAAGGCAGAGTGAACCA 59.019 47.619 0.00 0.00 0.00 3.67
3153 3257 4.702612 TCCTAGCACACAACAGAAAAACAA 59.297 37.500 0.00 0.00 0.00 2.83
3159 3263 6.594937 AGCACACAACAGAAAAACAATGAAAT 59.405 30.769 0.00 0.00 0.00 2.17
3253 3357 2.878406 GTTGGATGATAATGTGACCCCG 59.122 50.000 0.00 0.00 0.00 5.73
3271 3375 3.211045 CCCGTCAAAGGAAGACAAGAAA 58.789 45.455 0.00 0.00 35.77 2.52
3400 3504 1.026718 GTTCTCCTGTCAATGGCCCG 61.027 60.000 0.00 0.00 0.00 6.13
3463 3567 7.117236 TGCTGATGAAGAAAAATGAAGCATTTC 59.883 33.333 5.92 0.00 42.32 2.17
3490 3594 3.504906 GGCAACTTTGGTAACCTTACTCC 59.495 47.826 0.00 0.00 34.16 3.85
3514 3618 8.367911 TCCCATACTCTGCATTACATACTTTAG 58.632 37.037 0.00 0.00 0.00 1.85
3620 3860 6.316390 TCAAGCTTTTACCTTAGCTGATAAGC 59.684 38.462 7.15 0.00 46.53 3.09
3631 3871 6.989169 CCTTAGCTGATAAGCTGTACAGAAAT 59.011 38.462 27.08 14.87 45.81 2.17
3693 3933 1.203137 TCCTTCCACTTCCTCCTTCGA 60.203 52.381 0.00 0.00 0.00 3.71
3873 4113 9.669353 CTGTTCATTATTATAAGATGTTGTGGC 57.331 33.333 9.96 0.00 0.00 5.01
3952 4192 6.150474 TGCGTCTATATACATCCGATTCAGAA 59.850 38.462 0.00 0.00 0.00 3.02
4033 4276 1.135286 GCTACTGCAAACCTGGCATTC 60.135 52.381 0.00 0.00 41.06 2.67
4057 4300 3.681417 GCTCTGCATGTTTTGAATTTCCC 59.319 43.478 0.00 0.00 0.00 3.97
4099 4342 6.038936 TGAGCATGATTTGACCTAATCACATG 59.961 38.462 8.56 0.00 44.71 3.21
4110 4353 6.014242 TGACCTAATCACATGTGTTCTCTTCT 60.014 38.462 24.63 3.99 29.99 2.85
4113 4356 8.200792 ACCTAATCACATGTGTTCTCTTCTATC 58.799 37.037 24.63 0.00 0.00 2.08
4119 4363 8.993121 TCACATGTGTTCTCTTCTATCTTTTTC 58.007 33.333 24.63 0.00 0.00 2.29
4125 4369 6.936900 TGTTCTCTTCTATCTTTTTCCACAGG 59.063 38.462 0.00 0.00 0.00 4.00
4195 4439 1.904537 TGAGACATGATCAGTGCCTGT 59.095 47.619 0.00 0.00 32.61 4.00
4196 4440 2.093816 TGAGACATGATCAGTGCCTGTC 60.094 50.000 15.53 15.53 37.16 3.51
4197 4441 2.168106 GAGACATGATCAGTGCCTGTCT 59.832 50.000 22.75 22.75 46.78 3.41
4198 4442 2.093606 AGACATGATCAGTGCCTGTCTG 60.094 50.000 22.19 6.82 43.55 3.51
4199 4443 1.015109 CATGATCAGTGCCTGTCTGC 58.985 55.000 0.09 0.00 32.61 4.26
4201 4445 1.196766 TGATCAGTGCCTGTCTGCCT 61.197 55.000 0.00 0.00 32.61 4.75
4202 4446 0.743701 GATCAGTGCCTGTCTGCCTG 60.744 60.000 2.68 0.00 33.51 4.85
4203 4447 1.196766 ATCAGTGCCTGTCTGCCTGA 61.197 55.000 0.00 0.00 40.40 3.86
4204 4448 1.375652 CAGTGCCTGTCTGCCTGAG 60.376 63.158 0.00 0.00 33.84 3.35
4205 4449 1.534959 AGTGCCTGTCTGCCTGAGA 60.535 57.895 0.00 0.00 0.00 3.27
4206 4450 0.908656 AGTGCCTGTCTGCCTGAGAT 60.909 55.000 0.00 0.00 31.63 2.75
4207 4451 0.743701 GTGCCTGTCTGCCTGAGATG 60.744 60.000 0.00 0.00 31.63 2.90
4208 4452 1.818785 GCCTGTCTGCCTGAGATGC 60.819 63.158 0.00 0.00 31.63 3.91
4209 4453 1.906253 CCTGTCTGCCTGAGATGCT 59.094 57.895 0.00 0.00 31.63 3.79
4210 4454 0.462225 CCTGTCTGCCTGAGATGCTG 60.462 60.000 0.00 0.00 31.63 4.41
4275 4534 1.271054 CCTAGCTGGCACTGTGAACTT 60.271 52.381 12.86 0.00 0.00 2.66
4281 4540 3.733337 CTGGCACTGTGAACTTCTAAGT 58.267 45.455 12.86 0.00 42.04 2.24
4370 4632 1.745653 GGTTTCTGAACTATGCTGGCC 59.254 52.381 0.00 0.00 36.03 5.36
4387 4652 6.016555 TGCTGGCCTGTACTATAATATGAGA 58.983 40.000 11.69 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.442017 CGCACCTTTAAGGCGTTGC 60.442 57.895 11.45 12.44 45.27 4.17
9 10 4.838959 CGCACCTTTAAGGCGTTG 57.161 55.556 11.45 3.29 45.27 4.10
13 14 1.947456 CCTATTCCGCACCTTTAAGGC 59.053 52.381 11.45 0.00 39.63 4.35
14 15 3.553828 TCCTATTCCGCACCTTTAAGG 57.446 47.619 9.81 9.81 42.49 2.69
15 16 3.741344 CGATCCTATTCCGCACCTTTAAG 59.259 47.826 0.00 0.00 0.00 1.85
16 17 3.493699 CCGATCCTATTCCGCACCTTTAA 60.494 47.826 0.00 0.00 0.00 1.52
17 18 2.036733 CCGATCCTATTCCGCACCTTTA 59.963 50.000 0.00 0.00 0.00 1.85
18 19 1.202651 CCGATCCTATTCCGCACCTTT 60.203 52.381 0.00 0.00 0.00 3.11
19 20 0.393077 CCGATCCTATTCCGCACCTT 59.607 55.000 0.00 0.00 0.00 3.50
20 21 0.759436 ACCGATCCTATTCCGCACCT 60.759 55.000 0.00 0.00 0.00 4.00
21 22 0.600255 CACCGATCCTATTCCGCACC 60.600 60.000 0.00 0.00 0.00 5.01
22 23 1.222115 GCACCGATCCTATTCCGCAC 61.222 60.000 0.00 0.00 0.00 5.34
23 24 1.069090 GCACCGATCCTATTCCGCA 59.931 57.895 0.00 0.00 0.00 5.69
24 25 1.668151 GGCACCGATCCTATTCCGC 60.668 63.158 0.00 0.00 0.00 5.54
25 26 1.372997 CGGCACCGATCCTATTCCG 60.373 63.158 2.01 0.00 42.83 4.30
26 27 2.046938 TCGGCACCGATCCTATTCC 58.953 57.895 7.89 0.00 44.01 3.01
40 41 1.469767 GGAATTTCTGGTGCATTCGGC 60.470 52.381 0.00 0.00 45.13 5.54
41 42 1.202177 CGGAATTTCTGGTGCATTCGG 60.202 52.381 0.00 0.00 0.00 4.30
42 43 1.468520 ACGGAATTTCTGGTGCATTCG 59.531 47.619 9.94 0.00 0.00 3.34
43 44 3.057596 TCAACGGAATTTCTGGTGCATTC 60.058 43.478 16.93 0.00 40.23 2.67
44 45 2.890311 TCAACGGAATTTCTGGTGCATT 59.110 40.909 16.93 0.00 40.23 3.56
45 46 2.513753 TCAACGGAATTTCTGGTGCAT 58.486 42.857 16.93 0.00 40.23 3.96
46 47 1.974265 TCAACGGAATTTCTGGTGCA 58.026 45.000 16.93 5.15 40.23 4.57
47 48 2.476185 CGATCAACGGAATTTCTGGTGC 60.476 50.000 16.93 4.91 40.23 5.01
48 49 3.389687 CGATCAACGGAATTTCTGGTG 57.610 47.619 15.82 15.82 41.75 4.17
60 61 0.388134 ACGTTCTCCACCGATCAACG 60.388 55.000 9.80 9.80 44.20 4.10
61 62 2.257034 GTACGTTCTCCACCGATCAAC 58.743 52.381 0.00 0.00 0.00 3.18
62 63 1.203052 GGTACGTTCTCCACCGATCAA 59.797 52.381 0.00 0.00 0.00 2.57
63 64 0.813184 GGTACGTTCTCCACCGATCA 59.187 55.000 0.00 0.00 0.00 2.92
64 65 1.065251 GAGGTACGTTCTCCACCGATC 59.935 57.143 0.00 0.00 37.42 3.69
65 66 1.101331 GAGGTACGTTCTCCACCGAT 58.899 55.000 0.00 0.00 37.42 4.18
66 67 0.250858 TGAGGTACGTTCTCCACCGA 60.251 55.000 13.63 0.00 37.42 4.69
67 68 0.815734 ATGAGGTACGTTCTCCACCG 59.184 55.000 13.63 0.00 37.42 4.94
68 69 1.822990 TCATGAGGTACGTTCTCCACC 59.177 52.381 13.63 6.29 0.00 4.61
69 70 3.802948 ATCATGAGGTACGTTCTCCAC 57.197 47.619 13.63 5.68 0.00 4.02
70 71 3.118775 CCAATCATGAGGTACGTTCTCCA 60.119 47.826 13.63 3.61 0.00 3.86
71 72 3.132289 TCCAATCATGAGGTACGTTCTCC 59.868 47.826 13.63 6.18 0.00 3.71
72 73 4.386867 TCCAATCATGAGGTACGTTCTC 57.613 45.455 0.09 2.09 0.00 2.87
73 74 4.020573 TGTTCCAATCATGAGGTACGTTCT 60.021 41.667 0.09 0.00 0.00 3.01
74 75 4.250464 TGTTCCAATCATGAGGTACGTTC 58.750 43.478 0.09 0.00 0.00 3.95
75 76 4.280436 TGTTCCAATCATGAGGTACGTT 57.720 40.909 0.09 0.00 0.00 3.99
76 77 3.973206 TGTTCCAATCATGAGGTACGT 57.027 42.857 0.09 0.00 0.00 3.57
77 78 5.621197 TTTTGTTCCAATCATGAGGTACG 57.379 39.130 0.09 0.00 0.00 3.67
78 79 9.921637 TTTTATTTTGTTCCAATCATGAGGTAC 57.078 29.630 0.09 2.75 0.00 3.34
80 81 9.657419 GATTTTATTTTGTTCCAATCATGAGGT 57.343 29.630 0.09 0.00 0.00 3.85
81 82 9.101655 GGATTTTATTTTGTTCCAATCATGAGG 57.898 33.333 0.09 0.00 0.00 3.86
82 83 8.810427 CGGATTTTATTTTGTTCCAATCATGAG 58.190 33.333 0.09 0.00 0.00 2.90
83 84 7.763528 CCGGATTTTATTTTGTTCCAATCATGA 59.236 33.333 0.00 0.00 0.00 3.07
84 85 7.548780 ACCGGATTTTATTTTGTTCCAATCATG 59.451 33.333 9.46 0.00 0.00 3.07
85 86 7.619965 ACCGGATTTTATTTTGTTCCAATCAT 58.380 30.769 9.46 0.00 0.00 2.45
86 87 6.998802 ACCGGATTTTATTTTGTTCCAATCA 58.001 32.000 9.46 0.00 0.00 2.57
87 88 7.320399 AGACCGGATTTTATTTTGTTCCAATC 58.680 34.615 9.46 0.00 0.00 2.67
88 89 7.039363 TGAGACCGGATTTTATTTTGTTCCAAT 60.039 33.333 9.46 0.00 0.00 3.16
89 90 6.265649 TGAGACCGGATTTTATTTTGTTCCAA 59.734 34.615 9.46 0.00 0.00 3.53
90 91 5.770663 TGAGACCGGATTTTATTTTGTTCCA 59.229 36.000 9.46 0.00 0.00 3.53
91 92 6.090783 GTGAGACCGGATTTTATTTTGTTCC 58.909 40.000 9.46 0.00 0.00 3.62
92 93 6.090783 GGTGAGACCGGATTTTATTTTGTTC 58.909 40.000 9.46 0.00 0.00 3.18
93 94 5.047590 GGGTGAGACCGGATTTTATTTTGTT 60.048 40.000 9.46 0.00 39.83 2.83
94 95 4.461431 GGGTGAGACCGGATTTTATTTTGT 59.539 41.667 9.46 0.00 39.83 2.83
95 96 4.705023 AGGGTGAGACCGGATTTTATTTTG 59.295 41.667 9.46 0.00 39.83 2.44
96 97 4.930696 AGGGTGAGACCGGATTTTATTTT 58.069 39.130 9.46 0.00 39.83 1.82
97 98 4.586306 AGGGTGAGACCGGATTTTATTT 57.414 40.909 9.46 0.00 39.83 1.40
98 99 4.586306 AAGGGTGAGACCGGATTTTATT 57.414 40.909 9.46 0.00 39.83 1.40
99 100 4.586306 AAAGGGTGAGACCGGATTTTAT 57.414 40.909 9.46 0.00 39.83 1.40
100 101 5.502089 TTAAAGGGTGAGACCGGATTTTA 57.498 39.130 9.46 0.00 39.83 1.52
101 102 2.971901 AAAGGGTGAGACCGGATTTT 57.028 45.000 9.46 0.00 39.83 1.82
102 103 4.376225 TTTAAAGGGTGAGACCGGATTT 57.624 40.909 9.46 0.00 39.83 2.17
103 104 4.376225 TTTTAAAGGGTGAGACCGGATT 57.624 40.909 9.46 0.00 39.83 3.01
104 105 4.018779 TGATTTTAAAGGGTGAGACCGGAT 60.019 41.667 9.46 0.00 39.83 4.18
105 106 3.328343 TGATTTTAAAGGGTGAGACCGGA 59.672 43.478 9.46 0.00 39.83 5.14
106 107 3.681593 TGATTTTAAAGGGTGAGACCGG 58.318 45.455 0.00 0.00 39.83 5.28
107 108 4.941263 TCATGATTTTAAAGGGTGAGACCG 59.059 41.667 0.00 0.00 39.83 4.79
108 109 5.358160 CCTCATGATTTTAAAGGGTGAGACC 59.642 44.000 16.77 0.00 34.95 3.85
109 110 5.358160 CCCTCATGATTTTAAAGGGTGAGAC 59.642 44.000 16.77 0.00 41.56 3.36
110 111 5.252863 TCCCTCATGATTTTAAAGGGTGAGA 59.747 40.000 12.35 0.00 45.80 3.27
111 112 5.509498 TCCCTCATGATTTTAAAGGGTGAG 58.491 41.667 12.35 9.38 45.80 3.51
112 113 5.528600 TCCCTCATGATTTTAAAGGGTGA 57.471 39.130 12.35 1.69 45.80 4.02
113 114 6.603940 TTTCCCTCATGATTTTAAAGGGTG 57.396 37.500 12.35 0.00 45.80 4.61
114 115 7.457535 TCATTTTCCCTCATGATTTTAAAGGGT 59.542 33.333 12.35 0.00 45.80 4.34
115 116 7.850193 TCATTTTCCCTCATGATTTTAAAGGG 58.150 34.615 7.47 7.47 46.82 3.95
116 117 9.895138 AATCATTTTCCCTCATGATTTTAAAGG 57.105 29.630 0.00 0.00 44.32 3.11
163 164 3.502211 CACTTCATCCTACGGCTGTTTTT 59.498 43.478 1.99 0.00 0.00 1.94
164 165 3.074412 CACTTCATCCTACGGCTGTTTT 58.926 45.455 1.99 0.00 0.00 2.43
165 166 2.615493 CCACTTCATCCTACGGCTGTTT 60.615 50.000 1.99 0.00 0.00 2.83
166 167 1.066143 CCACTTCATCCTACGGCTGTT 60.066 52.381 1.99 0.00 0.00 3.16
167 168 0.537188 CCACTTCATCCTACGGCTGT 59.463 55.000 2.42 2.42 0.00 4.40
168 169 0.824109 TCCACTTCATCCTACGGCTG 59.176 55.000 0.00 0.00 0.00 4.85
169 170 1.482593 CTTCCACTTCATCCTACGGCT 59.517 52.381 0.00 0.00 0.00 5.52
170 171 1.941325 CTTCCACTTCATCCTACGGC 58.059 55.000 0.00 0.00 0.00 5.68
171 172 1.207089 TGCTTCCACTTCATCCTACGG 59.793 52.381 0.00 0.00 0.00 4.02
172 173 2.271800 GTGCTTCCACTTCATCCTACG 58.728 52.381 0.00 0.00 38.93 3.51
173 174 3.055819 TCTGTGCTTCCACTTCATCCTAC 60.056 47.826 0.00 0.00 42.54 3.18
174 175 3.173151 TCTGTGCTTCCACTTCATCCTA 58.827 45.455 0.00 0.00 42.54 2.94
175 176 1.980765 TCTGTGCTTCCACTTCATCCT 59.019 47.619 0.00 0.00 42.54 3.24
176 177 2.479566 TCTGTGCTTCCACTTCATCC 57.520 50.000 0.00 0.00 42.54 3.51
177 178 3.603532 TCATCTGTGCTTCCACTTCATC 58.396 45.455 0.00 0.00 42.54 2.92
178 179 3.708403 TCATCTGTGCTTCCACTTCAT 57.292 42.857 0.00 0.00 42.54 2.57
179 180 3.708403 ATCATCTGTGCTTCCACTTCA 57.292 42.857 0.00 0.00 42.54 3.02
180 181 3.559242 GCTATCATCTGTGCTTCCACTTC 59.441 47.826 0.00 0.00 42.54 3.01
181 182 3.054875 TGCTATCATCTGTGCTTCCACTT 60.055 43.478 0.00 0.00 42.54 3.16
182 183 2.502947 TGCTATCATCTGTGCTTCCACT 59.497 45.455 0.00 0.00 42.54 4.00
183 184 2.910199 TGCTATCATCTGTGCTTCCAC 58.090 47.619 0.00 0.00 42.40 4.02
184 185 3.473625 CATGCTATCATCTGTGCTTCCA 58.526 45.455 0.00 0.00 0.00 3.53
185 186 2.812591 CCATGCTATCATCTGTGCTTCC 59.187 50.000 0.00 0.00 0.00 3.46
186 187 2.812591 CCCATGCTATCATCTGTGCTTC 59.187 50.000 0.00 0.00 0.00 3.86
187 188 2.440627 TCCCATGCTATCATCTGTGCTT 59.559 45.455 0.00 0.00 0.00 3.91
188 189 2.038689 CTCCCATGCTATCATCTGTGCT 59.961 50.000 0.00 0.00 0.00 4.40
189 190 2.424557 CTCCCATGCTATCATCTGTGC 58.575 52.381 0.00 0.00 0.00 4.57
190 191 2.636403 TCCTCCCATGCTATCATCTGTG 59.364 50.000 0.00 0.00 0.00 3.66
191 192 2.905085 CTCCTCCCATGCTATCATCTGT 59.095 50.000 0.00 0.00 0.00 3.41
192 193 2.354906 GCTCCTCCCATGCTATCATCTG 60.355 54.545 0.00 0.00 0.00 2.90
193 194 1.907936 GCTCCTCCCATGCTATCATCT 59.092 52.381 0.00 0.00 0.00 2.90
194 195 1.627329 TGCTCCTCCCATGCTATCATC 59.373 52.381 0.00 0.00 0.00 2.92
195 196 1.629353 CTGCTCCTCCCATGCTATCAT 59.371 52.381 0.00 0.00 0.00 2.45
196 197 1.054231 CTGCTCCTCCCATGCTATCA 58.946 55.000 0.00 0.00 0.00 2.15
197 198 0.324285 CCTGCTCCTCCCATGCTATC 59.676 60.000 0.00 0.00 0.00 2.08
198 199 1.776975 GCCTGCTCCTCCCATGCTAT 61.777 60.000 0.00 0.00 0.00 2.97
199 200 2.446848 GCCTGCTCCTCCCATGCTA 61.447 63.158 0.00 0.00 0.00 3.49
200 201 3.806667 GCCTGCTCCTCCCATGCT 61.807 66.667 0.00 0.00 0.00 3.79
201 202 3.650298 TTGCCTGCTCCTCCCATGC 62.650 63.158 0.00 0.00 0.00 4.06
202 203 1.453379 CTTGCCTGCTCCTCCCATG 60.453 63.158 0.00 0.00 0.00 3.66
203 204 3.004951 CTTGCCTGCTCCTCCCAT 58.995 61.111 0.00 0.00 0.00 4.00
204 205 4.039092 GCTTGCCTGCTCCTCCCA 62.039 66.667 0.00 0.00 0.00 4.37
205 206 4.811364 GGCTTGCCTGCTCCTCCC 62.811 72.222 4.11 0.00 0.00 4.30
207 208 2.883267 ATTCGGCTTGCCTGCTCCTC 62.883 60.000 10.12 0.00 0.00 3.71
208 209 2.883267 GATTCGGCTTGCCTGCTCCT 62.883 60.000 10.12 0.00 0.00 3.69
209 210 2.439156 ATTCGGCTTGCCTGCTCC 60.439 61.111 10.12 0.00 0.00 4.70
210 211 2.476320 GGATTCGGCTTGCCTGCTC 61.476 63.158 10.12 3.36 0.00 4.26
211 212 2.439156 GGATTCGGCTTGCCTGCT 60.439 61.111 10.12 0.00 0.00 4.24
212 213 3.521796 GGGATTCGGCTTGCCTGC 61.522 66.667 10.12 0.00 0.00 4.85
213 214 3.204827 CGGGATTCGGCTTGCCTG 61.205 66.667 10.12 3.87 34.75 4.85
214 215 3.717294 ACGGGATTCGGCTTGCCT 61.717 61.111 10.12 0.00 44.45 4.75
215 216 3.508840 CACGGGATTCGGCTTGCC 61.509 66.667 0.75 0.75 44.45 4.52
216 217 3.508840 CCACGGGATTCGGCTTGC 61.509 66.667 0.00 0.00 44.45 4.01
217 218 1.674322 AACCACGGGATTCGGCTTG 60.674 57.895 0.00 0.00 44.45 4.01
218 219 1.674322 CAACCACGGGATTCGGCTT 60.674 57.895 0.00 0.00 44.45 4.35
219 220 2.046314 CAACCACGGGATTCGGCT 60.046 61.111 0.00 0.00 44.45 5.52
220 221 3.131478 CCAACCACGGGATTCGGC 61.131 66.667 0.00 0.00 44.45 5.54
229 230 3.666253 GAAACCGGCCCAACCACG 61.666 66.667 0.00 0.00 39.03 4.94
230 231 2.519780 TGAAACCGGCCCAACCAC 60.520 61.111 0.00 0.00 39.03 4.16
231 232 2.519780 GTGAAACCGGCCCAACCA 60.520 61.111 0.00 0.00 39.03 3.67
242 243 0.382636 CGCGTGAAGTTCGGTGAAAC 60.383 55.000 0.00 0.00 0.00 2.78
243 244 1.492319 CCGCGTGAAGTTCGGTGAAA 61.492 55.000 4.92 0.00 38.47 2.69
244 245 1.952133 CCGCGTGAAGTTCGGTGAA 60.952 57.895 4.92 0.00 38.47 3.18
245 246 2.355363 CCGCGTGAAGTTCGGTGA 60.355 61.111 4.92 0.00 38.47 4.02
246 247 3.411351 CCCGCGTGAAGTTCGGTG 61.411 66.667 4.92 0.00 41.46 4.94
247 248 2.939261 ATCCCGCGTGAAGTTCGGT 61.939 57.895 4.92 0.00 41.46 4.69
248 249 2.125673 ATCCCGCGTGAAGTTCGG 60.126 61.111 4.92 0.00 42.58 4.30
249 250 2.452813 CCATCCCGCGTGAAGTTCG 61.453 63.158 4.92 0.00 0.00 3.95
250 251 0.672401 TTCCATCCCGCGTGAAGTTC 60.672 55.000 4.92 0.00 0.00 3.01
251 252 0.250553 TTTCCATCCCGCGTGAAGTT 60.251 50.000 4.92 0.00 0.00 2.66
252 253 0.953960 GTTTCCATCCCGCGTGAAGT 60.954 55.000 4.92 0.00 0.00 3.01
253 254 0.673644 AGTTTCCATCCCGCGTGAAG 60.674 55.000 4.92 0.00 0.00 3.02
254 255 0.953471 CAGTTTCCATCCCGCGTGAA 60.953 55.000 4.92 0.00 0.00 3.18
255 256 1.375396 CAGTTTCCATCCCGCGTGA 60.375 57.895 4.92 0.00 0.00 4.35
256 257 2.398554 CCAGTTTCCATCCCGCGTG 61.399 63.158 4.92 0.00 0.00 5.34
257 258 2.046314 CCAGTTTCCATCCCGCGT 60.046 61.111 4.92 0.00 0.00 6.01
258 259 2.824041 CCCAGTTTCCATCCCGCG 60.824 66.667 0.00 0.00 0.00 6.46
259 260 3.140814 GCCCAGTTTCCATCCCGC 61.141 66.667 0.00 0.00 0.00 6.13
260 261 2.440247 GGCCCAGTTTCCATCCCG 60.440 66.667 0.00 0.00 0.00 5.14
261 262 2.042944 GGGCCCAGTTTCCATCCC 60.043 66.667 19.95 0.00 0.00 3.85
262 263 0.544120 TTTGGGCCCAGTTTCCATCC 60.544 55.000 26.87 0.00 0.00 3.51
263 264 1.001974 GTTTTGGGCCCAGTTTCCATC 59.998 52.381 26.87 7.25 0.00 3.51
264 265 1.055849 GTTTTGGGCCCAGTTTCCAT 58.944 50.000 26.87 0.00 0.00 3.41
265 266 1.051556 GGTTTTGGGCCCAGTTTCCA 61.052 55.000 26.87 5.91 0.00 3.53
266 267 1.752198 GGTTTTGGGCCCAGTTTCC 59.248 57.895 26.87 21.04 0.00 3.13
267 268 1.752198 GGGTTTTGGGCCCAGTTTC 59.248 57.895 26.87 15.93 45.40 2.78
268 269 3.979738 GGGTTTTGGGCCCAGTTT 58.020 55.556 26.87 0.00 45.40 2.66
273 274 0.548989 AAAGTTTGGGTTTTGGGCCC 59.451 50.000 17.59 17.59 46.26 5.80
274 275 1.210722 TGAAAGTTTGGGTTTTGGGCC 59.789 47.619 0.00 0.00 0.00 5.80
275 276 2.700722 TGAAAGTTTGGGTTTTGGGC 57.299 45.000 0.00 0.00 0.00 5.36
276 277 3.198853 TCCTTGAAAGTTTGGGTTTTGGG 59.801 43.478 0.00 0.00 0.00 4.12
277 278 4.479786 TCCTTGAAAGTTTGGGTTTTGG 57.520 40.909 0.00 0.00 0.00 3.28
278 279 6.652900 TCTTTTCCTTGAAAGTTTGGGTTTTG 59.347 34.615 0.00 0.00 37.76 2.44
279 280 6.774673 TCTTTTCCTTGAAAGTTTGGGTTTT 58.225 32.000 0.00 0.00 37.76 2.43
280 281 6.367374 TCTTTTCCTTGAAAGTTTGGGTTT 57.633 33.333 0.00 0.00 37.76 3.27
281 282 6.367374 TTCTTTTCCTTGAAAGTTTGGGTT 57.633 33.333 0.00 0.00 37.76 4.11
282 283 5.626809 GCTTCTTTTCCTTGAAAGTTTGGGT 60.627 40.000 0.00 0.00 37.76 4.51
283 284 4.811024 GCTTCTTTTCCTTGAAAGTTTGGG 59.189 41.667 0.00 0.00 37.76 4.12
284 285 5.521372 CAGCTTCTTTTCCTTGAAAGTTTGG 59.479 40.000 0.00 0.00 37.76 3.28
285 286 5.006068 GCAGCTTCTTTTCCTTGAAAGTTTG 59.994 40.000 0.00 0.00 37.76 2.93
286 287 5.111989 GCAGCTTCTTTTCCTTGAAAGTTT 58.888 37.500 0.00 0.00 37.76 2.66
287 288 4.160252 TGCAGCTTCTTTTCCTTGAAAGTT 59.840 37.500 0.00 0.00 37.76 2.66
288 289 3.701040 TGCAGCTTCTTTTCCTTGAAAGT 59.299 39.130 0.00 0.00 37.76 2.66
289 290 4.311816 TGCAGCTTCTTTTCCTTGAAAG 57.688 40.909 0.00 0.00 37.85 2.62
290 291 4.099881 ACATGCAGCTTCTTTTCCTTGAAA 59.900 37.500 0.00 0.00 0.00 2.69
291 292 3.638160 ACATGCAGCTTCTTTTCCTTGAA 59.362 39.130 0.00 0.00 0.00 2.69
292 293 3.225104 ACATGCAGCTTCTTTTCCTTGA 58.775 40.909 0.00 0.00 0.00 3.02
293 294 3.655276 ACATGCAGCTTCTTTTCCTTG 57.345 42.857 0.00 0.00 0.00 3.61
294 295 5.789643 TTTACATGCAGCTTCTTTTCCTT 57.210 34.783 0.00 0.00 0.00 3.36
295 296 5.990120 ATTTACATGCAGCTTCTTTTCCT 57.010 34.783 0.00 0.00 0.00 3.36
296 297 6.158598 TGAATTTACATGCAGCTTCTTTTCC 58.841 36.000 0.00 0.00 0.00 3.13
297 298 7.383300 AGTTGAATTTACATGCAGCTTCTTTTC 59.617 33.333 0.00 0.00 24.15 2.29
298 299 7.212274 AGTTGAATTTACATGCAGCTTCTTTT 58.788 30.769 0.00 0.00 24.15 2.27
299 300 6.752168 AGTTGAATTTACATGCAGCTTCTTT 58.248 32.000 0.00 0.00 24.15 2.52
300 301 6.336842 AGTTGAATTTACATGCAGCTTCTT 57.663 33.333 0.00 0.00 24.15 2.52
301 302 5.972107 AGTTGAATTTACATGCAGCTTCT 57.028 34.783 0.00 0.00 24.15 2.85
302 303 8.519492 TTTTAGTTGAATTTACATGCAGCTTC 57.481 30.769 0.00 0.00 31.93 3.86
303 304 8.885494 TTTTTAGTTGAATTTACATGCAGCTT 57.115 26.923 0.00 0.00 31.93 3.74
325 326 5.764192 ACCATTTACATGCAGCATTGTTTTT 59.236 32.000 4.69 0.00 0.00 1.94
326 327 5.179742 CACCATTTACATGCAGCATTGTTTT 59.820 36.000 4.69 0.00 0.00 2.43
327 328 4.691685 CACCATTTACATGCAGCATTGTTT 59.308 37.500 4.69 0.00 0.00 2.83
328 329 4.247258 CACCATTTACATGCAGCATTGTT 58.753 39.130 4.69 0.00 0.00 2.83
329 330 3.368635 CCACCATTTACATGCAGCATTGT 60.369 43.478 4.69 10.12 0.00 2.71
330 331 3.191669 CCACCATTTACATGCAGCATTG 58.808 45.455 4.69 0.63 0.00 2.82
331 332 2.833338 ACCACCATTTACATGCAGCATT 59.167 40.909 4.69 0.15 0.00 3.56
332 333 2.428171 GACCACCATTTACATGCAGCAT 59.572 45.455 0.52 0.52 0.00 3.79
333 334 1.818060 GACCACCATTTACATGCAGCA 59.182 47.619 0.00 0.00 0.00 4.41
334 335 2.094675 AGACCACCATTTACATGCAGC 58.905 47.619 0.00 0.00 0.00 5.25
335 336 2.159338 GCAGACCACCATTTACATGCAG 60.159 50.000 0.00 0.00 32.79 4.41
342 343 4.312052 GGCGCAGACCACCATTTA 57.688 55.556 10.83 0.00 0.00 1.40
368 371 2.125912 CCGCAGACCACTTCCTCG 60.126 66.667 0.00 0.00 0.00 4.63
369 372 2.266055 CCCGCAGACCACTTCCTC 59.734 66.667 0.00 0.00 0.00 3.71
379 382 1.979155 CCAGTCAGAGACCCGCAGA 60.979 63.158 0.00 0.00 32.18 4.26
384 387 2.716017 CCTCGCCAGTCAGAGACCC 61.716 68.421 0.00 0.00 36.65 4.46
411 414 0.108520 GTTTCGCTGGACCCGATGTA 60.109 55.000 0.00 0.00 34.35 2.29
456 473 2.039418 ACTGTGACAGTCTGCTACCAA 58.961 47.619 13.33 0.00 41.21 3.67
457 474 1.341209 CACTGTGACAGTCTGCTACCA 59.659 52.381 16.50 0.00 43.43 3.25
458 475 1.337260 CCACTGTGACAGTCTGCTACC 60.337 57.143 16.50 0.00 43.43 3.18
482 499 4.735132 ACCACGACATCGGTGCGG 62.735 66.667 15.09 5.20 44.95 5.69
528 545 3.161866 GTGAGGAGAGAGAGGTTTCAGT 58.838 50.000 0.00 0.00 0.00 3.41
552 570 1.881973 CCAACTGACTGGTGAATGGTG 59.118 52.381 0.00 0.00 34.70 4.17
557 575 1.843421 CCCCCAACTGACTGGTGAA 59.157 57.895 0.00 0.00 34.70 3.18
581 600 1.212229 GGAAGGTGACGACGAGGAC 59.788 63.158 0.00 0.00 0.00 3.85
599 618 0.463833 GCATACCTGAACCCCGGAAG 60.464 60.000 0.73 0.00 0.00 3.46
602 621 0.819259 CATGCATACCTGAACCCCGG 60.819 60.000 0.00 0.00 0.00 5.73
607 631 0.383231 GCCAGCATGCATACCTGAAC 59.617 55.000 21.98 12.86 31.97 3.18
634 658 0.950116 GCTGCAGCAAGAACAGAGTT 59.050 50.000 33.36 0.00 41.59 3.01
683 726 2.023984 TCCTCCAAGCTCATCACTCCTA 60.024 50.000 0.00 0.00 0.00 2.94
717 760 2.546584 GGCAACAAAGGCAAAAGAGGAG 60.547 50.000 0.00 0.00 0.00 3.69
755 798 4.113617 TGGAGAAGACCAGGTCGG 57.886 61.111 14.32 0.00 37.67 4.79
765 808 1.830477 CACCTTCCCTCTCTGGAGAAG 59.170 57.143 1.86 0.00 41.86 2.85
770 813 2.191400 TGAATCACCTTCCCTCTCTGG 58.809 52.381 0.00 0.00 32.49 3.86
789 832 5.849357 GCATTATGCAGAGAGAGAGAATG 57.151 43.478 12.80 0.00 44.26 2.67
834 887 0.787084 TCACCTTCCCTCTCTGGACT 59.213 55.000 0.00 0.00 38.35 3.85
878 958 4.649218 AGAAAGGAGAGCCTCTACTCAATC 59.351 45.833 7.00 6.59 46.28 2.67
884 964 2.835156 ACCAAGAAAGGAGAGCCTCTAC 59.165 50.000 0.00 0.00 46.28 2.59
893 978 5.047306 GGATTAAAACCCACCAAGAAAGGAG 60.047 44.000 0.00 0.00 0.00 3.69
897 982 5.459505 TCTGGATTAAAACCCACCAAGAAA 58.540 37.500 0.00 0.00 0.00 2.52
967 1052 3.804153 ATGGCGATGGCAGCGAGAG 62.804 63.158 30.95 0.00 42.43 3.20
1103 1188 3.930634 ACAAGAAGAAGAAATGCAGCC 57.069 42.857 0.00 0.00 0.00 4.85
1123 1208 9.856488 GATTTCTCGTTAATCAGGCATACTATA 57.144 33.333 0.00 0.00 33.27 1.31
1126 1211 5.992217 GGATTTCTCGTTAATCAGGCATACT 59.008 40.000 0.00 0.00 34.43 2.12
1127 1212 5.179555 GGGATTTCTCGTTAATCAGGCATAC 59.820 44.000 0.00 0.00 34.43 2.39
1128 1213 5.163248 TGGGATTTCTCGTTAATCAGGCATA 60.163 40.000 0.00 0.00 34.43 3.14
1129 1214 4.137543 GGGATTTCTCGTTAATCAGGCAT 58.862 43.478 0.00 0.00 34.43 4.40
1341 1431 1.439644 GATGACCAGCTCGGAGGAC 59.560 63.158 7.20 0.00 38.63 3.85
1749 1839 2.166459 CACCACGAGATAGAAGAGGCAA 59.834 50.000 0.00 0.00 0.00 4.52
1798 1892 9.804977 CTTAGGATTCATTCATATTCCTTCCTT 57.195 33.333 0.00 0.00 37.89 3.36
1799 1893 8.953665 ACTTAGGATTCATTCATATTCCTTCCT 58.046 33.333 0.00 0.00 37.89 3.36
1829 1923 9.630098 CAGTGTGCAGTTCAGATAAAATAAATT 57.370 29.630 0.00 0.00 0.00 1.82
1844 1939 4.408182 AGACTAACTTCAGTGTGCAGTT 57.592 40.909 0.00 9.19 35.00 3.16
1888 1987 5.221145 CGAGTCTAGGTACAGAATCTGCATT 60.221 44.000 10.62 0.00 37.47 3.56
1891 1990 3.549221 GCGAGTCTAGGTACAGAATCTGC 60.549 52.174 10.62 9.15 37.47 4.26
1984 2083 7.500141 TCTTCATGTCCATCTCGATGATTTTA 58.500 34.615 8.42 0.00 41.20 1.52
1988 2087 5.163374 TGTTCTTCATGTCCATCTCGATGAT 60.163 40.000 8.42 0.00 41.20 2.45
2017 2116 6.981722 ACTTACAAAGCATTTTCCGAAAGAT 58.018 32.000 0.00 0.00 35.03 2.40
2176 2277 2.802816 GACAGACGCACTTGAACTTGAT 59.197 45.455 0.00 0.00 0.00 2.57
2344 2448 0.032952 TCTACAGACAAAGGCGCGTT 59.967 50.000 10.00 10.00 0.00 4.84
2389 2493 3.193267 TGATGCTTGCACAAAGATTACCC 59.807 43.478 0.00 0.00 38.24 3.69
2474 2578 3.460103 CAAGTTCAGTGCCATTTTTGCT 58.540 40.909 0.00 0.00 0.00 3.91
2545 2649 3.821748 AGTATCATCTAGGAGCGTGTCA 58.178 45.455 0.00 0.00 0.00 3.58
2709 2813 2.476619 ACGCTGTTTTGTCGAGAATGAG 59.523 45.455 0.00 0.00 0.00 2.90
2712 2816 2.221055 GTCACGCTGTTTTGTCGAGAAT 59.779 45.455 0.00 0.00 0.00 2.40
2749 2853 1.681166 CCATCCCCAGTCTCTTTGCTG 60.681 57.143 0.00 0.00 0.00 4.41
2864 2968 6.238076 GGTTTTGCGACATTTTCATGTTCTTT 60.238 34.615 0.00 0.00 44.22 2.52
2907 3011 3.198635 AGTTGGTACCATCACATCCTCAG 59.801 47.826 22.15 0.00 0.00 3.35
2943 3047 2.325082 CCAGGTTCTTCCGTTGCCG 61.325 63.158 0.00 0.00 41.99 5.69
2969 3073 1.243902 TTTCCGGAGACATTGGTTGC 58.756 50.000 3.34 0.00 0.00 4.17
2980 3084 4.453819 GGATTATCTGAAGCATTTCCGGAG 59.546 45.833 3.34 0.00 32.09 4.63
2991 3095 3.501349 TCTCCCTCCGGATTATCTGAAG 58.499 50.000 3.57 0.00 37.60 3.02
3000 3104 1.124477 GCCTTGATCTCCCTCCGGAT 61.124 60.000 3.57 0.00 37.60 4.18
3004 3108 0.758123 CTCTGCCTTGATCTCCCTCC 59.242 60.000 0.00 0.00 0.00 4.30
3021 3125 0.880278 TTCGCTGCACTGGTTCACTC 60.880 55.000 0.00 0.00 0.00 3.51
3030 3134 1.802960 CATGTTCTTCTTCGCTGCACT 59.197 47.619 0.00 0.00 0.00 4.40
3153 3257 3.750371 TCAACGGAACACTCCATTTCAT 58.250 40.909 0.00 0.00 42.58 2.57
3159 3263 2.829094 TCCTCAACGGAACACTCCA 58.171 52.632 0.00 0.00 42.58 3.86
3207 3311 1.066215 TCACAGATGATCCACCCAACG 60.066 52.381 0.00 0.00 0.00 4.10
3214 3318 0.832626 ACGCCATCACAGATGATCCA 59.167 50.000 8.49 0.00 44.13 3.41
3253 3357 6.183360 TGTCCATTTTCTTGTCTTCCTTTGAC 60.183 38.462 0.00 0.00 35.21 3.18
3271 3375 3.713248 TGATAGCAGGAGTCATGTCCATT 59.287 43.478 6.66 0.00 39.34 3.16
3400 3504 4.662145 CTGTTAATCATGAGGGCGTTTTC 58.338 43.478 0.09 0.00 0.00 2.29
3463 3567 2.632512 AGGTTACCAAAGTTGCCAATGG 59.367 45.455 3.51 0.00 38.91 3.16
3490 3594 7.875041 AGCTAAAGTATGTAATGCAGAGTATGG 59.125 37.037 0.00 0.00 0.00 2.74
3514 3618 2.537401 GAAATGCAGGCTCAATGAAGC 58.463 47.619 0.00 0.00 41.73 3.86
3620 3860 6.958255 TCAAACATGACACATTTCTGTACAG 58.042 36.000 17.17 17.17 33.14 2.74
3631 3871 1.383523 TGCCGTTCAAACATGACACA 58.616 45.000 0.00 0.00 0.00 3.72
3723 3963 3.919216 AGTTCAGGAACGATGACAAGAG 58.081 45.455 6.52 0.00 45.50 2.85
3832 4072 8.970859 ATAATGAACAGAGGAAGTAATTCCAG 57.029 34.615 23.06 14.46 43.54 3.86
3952 4192 8.557029 CACTGTTATAAGAGGTTCGAACTTTTT 58.443 33.333 26.32 21.87 0.00 1.94
3974 4214 1.546961 AGTACTCCCTCCGTTCACTG 58.453 55.000 0.00 0.00 0.00 3.66
4033 4276 4.387862 GGAAATTCAAAACATGCAGAGCAG 59.612 41.667 0.00 0.00 43.65 4.24
4057 4300 3.002656 TGCTCAAACGCAGAGAAGAAAAG 59.997 43.478 3.82 0.00 34.44 2.27
4099 4342 7.095017 CCTGTGGAAAAAGATAGAAGAGAACAC 60.095 40.741 0.00 0.00 0.00 3.32
4119 4363 2.493278 CCCTTATTGCAGTTTCCTGTGG 59.507 50.000 0.00 0.00 41.02 4.17
4125 4369 1.204704 GGTGCCCCTTATTGCAGTTTC 59.795 52.381 0.00 0.00 38.34 2.78
4195 4439 1.835531 TCAATCAGCATCTCAGGCAGA 59.164 47.619 0.00 0.00 34.78 4.26
4196 4440 2.327200 TCAATCAGCATCTCAGGCAG 57.673 50.000 0.00 0.00 0.00 4.85
4197 4441 2.640184 CTTCAATCAGCATCTCAGGCA 58.360 47.619 0.00 0.00 0.00 4.75
4198 4442 1.334243 GCTTCAATCAGCATCTCAGGC 59.666 52.381 0.00 0.00 39.83 4.85
4199 4443 1.948145 GGCTTCAATCAGCATCTCAGG 59.052 52.381 0.00 0.00 42.10 3.86
4201 4445 2.793288 TGGCTTCAATCAGCATCTCA 57.207 45.000 0.00 0.00 42.10 3.27
4202 4446 2.293677 CCATGGCTTCAATCAGCATCTC 59.706 50.000 0.00 0.00 42.10 2.75
4203 4447 2.307768 CCATGGCTTCAATCAGCATCT 58.692 47.619 0.00 0.00 42.10 2.90
4204 4448 2.029623 ACCATGGCTTCAATCAGCATC 58.970 47.619 13.04 0.00 42.10 3.91
4205 4449 2.154567 ACCATGGCTTCAATCAGCAT 57.845 45.000 13.04 0.00 42.10 3.79
4206 4450 2.804986 TACCATGGCTTCAATCAGCA 57.195 45.000 13.04 0.00 42.10 4.41
4207 4451 5.709164 AGATTATACCATGGCTTCAATCAGC 59.291 40.000 13.04 0.00 39.28 4.26
4208 4452 7.446319 TGAAGATTATACCATGGCTTCAATCAG 59.554 37.037 21.10 0.00 38.84 2.90
4209 4453 7.289310 TGAAGATTATACCATGGCTTCAATCA 58.711 34.615 21.10 11.06 38.84 2.57
4210 4454 7.750229 TGAAGATTATACCATGGCTTCAATC 57.250 36.000 21.10 18.41 38.84 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.