Multiple sequence alignment - TraesCS1A01G216400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G216400 chr1A 100.000 4818 0 0 1 4818 382594281 382599098 0.000000e+00 8898.0
1 TraesCS1A01G216400 chr1A 99.115 226 2 0 228 453 555305170 555305395 1.610000e-109 407.0
2 TraesCS1A01G216400 chr7A 92.494 1692 96 12 3132 4818 712591462 712589797 0.000000e+00 2392.0
3 TraesCS1A01G216400 chr7A 94.473 1375 75 1 1766 3140 712600178 712598805 0.000000e+00 2117.0
4 TraesCS1A01G216400 chr7A 94.127 1328 68 5 447 1770 712610213 712608892 0.000000e+00 2012.0
5 TraesCS1A01G216400 chr7A 95.690 232 9 1 2 232 712610454 712610223 5.890000e-99 372.0
6 TraesCS1A01G216400 chr7A 94.737 38 2 0 4681 4718 712589882 712589845 5.210000e-05 60.2
7 TraesCS1A01G216400 chr2A 82.615 2065 313 30 2771 4814 653278762 653280801 0.000000e+00 1783.0
8 TraesCS1A01G216400 chr2A 82.175 1655 264 24 447 2085 653277108 653278747 0.000000e+00 1393.0
9 TraesCS1A01G216400 chr2A 99.083 218 2 0 228 445 695285719 695285936 4.520000e-105 392.0
10 TraesCS1A01G216400 chr2A 88.938 226 25 0 1 226 653276867 653277092 3.670000e-71 279.0
11 TraesCS1A01G216400 chr6B 100.000 222 0 0 228 449 51219897 51220118 1.250000e-110 411.0
12 TraesCS1A01G216400 chr1B 99.543 219 1 0 228 446 629797891 629798109 2.700000e-107 399.0
13 TraesCS1A01G216400 chr1B 99.087 219 2 0 228 446 279187583 279187801 1.260000e-105 394.0
14 TraesCS1A01G216400 chr7B 99.537 216 1 0 231 446 551948983 551949198 1.260000e-105 394.0
15 TraesCS1A01G216400 chr3B 98.655 223 1 2 228 449 51910316 51910095 1.260000e-105 394.0
16 TraesCS1A01G216400 chr5B 97.807 228 2 3 228 454 482994165 482993940 1.630000e-104 390.0
17 TraesCS1A01G216400 chr2B 98.630 219 3 0 228 446 698032945 698033163 5.850000e-104 388.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G216400 chr1A 382594281 382599098 4817 False 8898.000000 8898 100.0000 1 4818 1 chr1A.!!$F1 4817
1 TraesCS1A01G216400 chr7A 712598805 712600178 1373 True 2117.000000 2117 94.4730 1766 3140 1 chr7A.!!$R1 1374
2 TraesCS1A01G216400 chr7A 712589797 712591462 1665 True 1226.100000 2392 93.6155 3132 4818 2 chr7A.!!$R2 1686
3 TraesCS1A01G216400 chr7A 712608892 712610454 1562 True 1192.000000 2012 94.9085 2 1770 2 chr7A.!!$R3 1768
4 TraesCS1A01G216400 chr2A 653276867 653280801 3934 False 1151.666667 1783 84.5760 1 4814 3 chr2A.!!$F2 4813

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
416 418 0.177836 GGCTTGGTTGGTTGCTTTGT 59.822 50.0 0.00 0.0 0.0 2.83 F
1224 1233 0.946221 CAAGGCTGCGTTCGAGTTCT 60.946 55.0 4.36 0.0 0.0 3.01 F
2311 2324 0.744281 TCATGCAAGATCGTCCGCTA 59.256 50.0 0.00 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2098 2111 0.033504 GTGTCAACAAGAGGAGCCGA 59.966 55.0 0.00 0.0 0.00 5.54 R
2484 2497 0.392461 GGTCCGGCACAAGATAAGCA 60.392 55.0 0.00 0.0 0.00 3.91 R
4293 4337 0.036952 CGATCTCACTGGTGCACCTT 60.037 55.0 34.75 20.1 36.82 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
171 173 2.290514 CCATTGAGGGTGAAGAGAGCAA 60.291 50.000 0.00 0.00 0.00 3.91
172 174 3.415212 CATTGAGGGTGAAGAGAGCAAA 58.585 45.455 0.00 0.00 0.00 3.68
240 242 4.516195 GAGGGGCGCTTCGGAGTC 62.516 72.222 7.64 0.00 0.00 3.36
242 244 4.083862 GGGGCGCTTCGGAGTCTT 62.084 66.667 7.64 0.00 0.00 3.01
243 245 2.815647 GGGCGCTTCGGAGTCTTG 60.816 66.667 7.64 0.00 0.00 3.02
244 246 2.815647 GGCGCTTCGGAGTCTTGG 60.816 66.667 7.64 0.00 0.00 3.61
245 247 2.261671 GCGCTTCGGAGTCTTGGA 59.738 61.111 0.00 0.00 0.00 3.53
246 248 1.807573 GCGCTTCGGAGTCTTGGAG 60.808 63.158 0.00 0.00 0.00 3.86
247 249 1.807573 CGCTTCGGAGTCTTGGAGC 60.808 63.158 6.23 6.23 0.00 4.70
248 250 1.448717 GCTTCGGAGTCTTGGAGCC 60.449 63.158 5.23 0.00 0.00 4.70
249 251 1.893919 GCTTCGGAGTCTTGGAGCCT 61.894 60.000 5.23 0.00 0.00 4.58
250 252 1.475403 CTTCGGAGTCTTGGAGCCTA 58.525 55.000 0.00 0.00 0.00 3.93
251 253 1.407258 CTTCGGAGTCTTGGAGCCTAG 59.593 57.143 0.00 0.00 0.00 3.02
252 254 0.331954 TCGGAGTCTTGGAGCCTAGT 59.668 55.000 0.00 0.00 0.00 2.57
253 255 0.457851 CGGAGTCTTGGAGCCTAGTG 59.542 60.000 0.00 0.00 0.00 2.74
254 256 0.827368 GGAGTCTTGGAGCCTAGTGG 59.173 60.000 0.00 0.00 0.00 4.00
255 257 1.619977 GGAGTCTTGGAGCCTAGTGGA 60.620 57.143 0.00 0.00 34.57 4.02
256 258 2.180276 GAGTCTTGGAGCCTAGTGGAA 58.820 52.381 0.00 0.00 34.57 3.53
257 259 2.167487 GAGTCTTGGAGCCTAGTGGAAG 59.833 54.545 0.00 0.00 34.57 3.46
258 260 2.180276 GTCTTGGAGCCTAGTGGAAGA 58.820 52.381 0.00 0.00 34.57 2.87
259 261 2.769095 GTCTTGGAGCCTAGTGGAAGAT 59.231 50.000 0.00 0.00 34.57 2.40
260 262 3.034635 TCTTGGAGCCTAGTGGAAGATC 58.965 50.000 0.00 0.00 34.57 2.75
261 263 1.794714 TGGAGCCTAGTGGAAGATCC 58.205 55.000 0.00 0.00 36.96 3.36
262 264 1.052617 GGAGCCTAGTGGAAGATCCC 58.947 60.000 0.00 0.00 35.03 3.85
263 265 0.676736 GAGCCTAGTGGAAGATCCCG 59.323 60.000 0.00 0.00 35.03 5.14
264 266 0.760945 AGCCTAGTGGAAGATCCCGG 60.761 60.000 0.00 0.00 35.03 5.73
265 267 1.049289 GCCTAGTGGAAGATCCCGGT 61.049 60.000 0.00 0.00 35.03 5.28
266 268 0.753262 CCTAGTGGAAGATCCCGGTG 59.247 60.000 0.00 0.00 35.03 4.94
267 269 0.753262 CTAGTGGAAGATCCCGGTGG 59.247 60.000 0.00 0.00 35.03 4.61
268 270 0.689745 TAGTGGAAGATCCCGGTGGG 60.690 60.000 0.00 0.00 46.11 4.61
269 271 3.407967 TGGAAGATCCCGGTGGGC 61.408 66.667 0.00 0.00 43.94 5.36
270 272 4.547367 GGAAGATCCCGGTGGGCG 62.547 72.222 0.00 0.00 43.94 6.13
288 290 3.843240 CAGCGTTCGCGAGGCTTC 61.843 66.667 27.42 10.11 46.75 3.86
289 291 4.057428 AGCGTTCGCGAGGCTTCT 62.057 61.111 25.22 10.76 46.75 2.85
290 292 3.112709 GCGTTCGCGAGGCTTCTT 61.113 61.111 22.18 0.00 44.71 2.52
291 293 3.072666 GCGTTCGCGAGGCTTCTTC 62.073 63.158 22.18 0.42 44.71 2.87
292 294 2.778997 CGTTCGCGAGGCTTCTTCG 61.779 63.158 9.59 2.15 44.71 3.79
293 295 1.733399 GTTCGCGAGGCTTCTTCGT 60.733 57.895 9.59 0.00 0.00 3.85
294 296 1.006571 TTCGCGAGGCTTCTTCGTT 60.007 52.632 9.59 0.00 0.00 3.85
295 297 0.599204 TTCGCGAGGCTTCTTCGTTT 60.599 50.000 9.59 0.00 0.00 3.60
296 298 0.599204 TCGCGAGGCTTCTTCGTTTT 60.599 50.000 3.71 0.00 0.00 2.43
297 299 0.179248 CGCGAGGCTTCTTCGTTTTC 60.179 55.000 0.00 0.00 0.00 2.29
298 300 0.179248 GCGAGGCTTCTTCGTTTTCG 60.179 55.000 0.00 0.00 45.64 3.46
299 301 1.137513 CGAGGCTTCTTCGTTTTCGT 58.862 50.000 0.00 0.00 44.46 3.85
300 302 1.525619 CGAGGCTTCTTCGTTTTCGTT 59.474 47.619 0.00 0.00 44.46 3.85
301 303 2.659291 CGAGGCTTCTTCGTTTTCGTTG 60.659 50.000 0.00 0.00 44.46 4.10
302 304 2.542595 GAGGCTTCTTCGTTTTCGTTGA 59.457 45.455 0.00 0.00 44.46 3.18
303 305 3.139077 AGGCTTCTTCGTTTTCGTTGAT 58.861 40.909 0.00 0.00 44.46 2.57
304 306 3.186613 AGGCTTCTTCGTTTTCGTTGATC 59.813 43.478 0.00 0.00 44.46 2.92
305 307 3.479949 GCTTCTTCGTTTTCGTTGATCC 58.520 45.455 0.00 0.00 44.46 3.36
306 308 3.722123 CTTCTTCGTTTTCGTTGATCCG 58.278 45.455 0.00 0.00 44.46 4.18
307 309 1.458064 TCTTCGTTTTCGTTGATCCGC 59.542 47.619 0.00 0.00 44.46 5.54
308 310 0.513820 TTCGTTTTCGTTGATCCGCC 59.486 50.000 0.00 0.00 44.46 6.13
309 311 1.225637 CGTTTTCGTTGATCCGCCG 60.226 57.895 0.00 0.00 38.65 6.46
310 312 1.864176 GTTTTCGTTGATCCGCCGT 59.136 52.632 0.00 0.00 0.00 5.68
311 313 0.236449 GTTTTCGTTGATCCGCCGTT 59.764 50.000 0.00 0.00 0.00 4.44
312 314 0.236187 TTTTCGTTGATCCGCCGTTG 59.764 50.000 0.00 0.00 0.00 4.10
313 315 0.881159 TTTCGTTGATCCGCCGTTGT 60.881 50.000 0.00 0.00 0.00 3.32
314 316 1.286354 TTCGTTGATCCGCCGTTGTC 61.286 55.000 0.00 0.00 0.00 3.18
315 317 2.776072 GTTGATCCGCCGTTGTCG 59.224 61.111 0.00 0.00 0.00 4.35
327 329 2.399396 CGTTGTCGGCATTTGTTTCT 57.601 45.000 0.00 0.00 0.00 2.52
328 330 2.726633 CGTTGTCGGCATTTGTTTCTT 58.273 42.857 0.00 0.00 0.00 2.52
329 331 3.112580 CGTTGTCGGCATTTGTTTCTTT 58.887 40.909 0.00 0.00 0.00 2.52
330 332 3.549873 CGTTGTCGGCATTTGTTTCTTTT 59.450 39.130 0.00 0.00 0.00 2.27
331 333 4.547966 CGTTGTCGGCATTTGTTTCTTTTG 60.548 41.667 0.00 0.00 0.00 2.44
332 334 2.863137 TGTCGGCATTTGTTTCTTTTGC 59.137 40.909 0.00 0.00 0.00 3.68
333 335 3.123050 GTCGGCATTTGTTTCTTTTGCT 58.877 40.909 0.00 0.00 33.86 3.91
334 336 3.182372 GTCGGCATTTGTTTCTTTTGCTC 59.818 43.478 0.00 0.00 33.86 4.26
335 337 3.068024 TCGGCATTTGTTTCTTTTGCTCT 59.932 39.130 0.00 0.00 33.86 4.09
336 338 3.803778 CGGCATTTGTTTCTTTTGCTCTT 59.196 39.130 0.00 0.00 33.86 2.85
337 339 4.270808 CGGCATTTGTTTCTTTTGCTCTTT 59.729 37.500 0.00 0.00 33.86 2.52
338 340 5.556947 CGGCATTTGTTTCTTTTGCTCTTTC 60.557 40.000 0.00 0.00 33.86 2.62
339 341 5.525012 GGCATTTGTTTCTTTTGCTCTTTCT 59.475 36.000 0.00 0.00 33.86 2.52
340 342 6.292542 GGCATTTGTTTCTTTTGCTCTTTCTC 60.293 38.462 0.00 0.00 33.86 2.87
341 343 6.478016 GCATTTGTTTCTTTTGCTCTTTCTCT 59.522 34.615 0.00 0.00 0.00 3.10
342 344 7.516312 GCATTTGTTTCTTTTGCTCTTTCTCTG 60.516 37.037 0.00 0.00 0.00 3.35
343 345 6.515272 TTGTTTCTTTTGCTCTTTCTCTGT 57.485 33.333 0.00 0.00 0.00 3.41
344 346 6.124088 TGTTTCTTTTGCTCTTTCTCTGTC 57.876 37.500 0.00 0.00 0.00 3.51
345 347 5.201181 GTTTCTTTTGCTCTTTCTCTGTCG 58.799 41.667 0.00 0.00 0.00 4.35
346 348 4.060038 TCTTTTGCTCTTTCTCTGTCGT 57.940 40.909 0.00 0.00 0.00 4.34
347 349 4.442706 TCTTTTGCTCTTTCTCTGTCGTT 58.557 39.130 0.00 0.00 0.00 3.85
348 350 4.876107 TCTTTTGCTCTTTCTCTGTCGTTT 59.124 37.500 0.00 0.00 0.00 3.60
349 351 4.795970 TTTGCTCTTTCTCTGTCGTTTC 57.204 40.909 0.00 0.00 0.00 2.78
350 352 3.735237 TGCTCTTTCTCTGTCGTTTCT 57.265 42.857 0.00 0.00 0.00 2.52
351 353 4.060038 TGCTCTTTCTCTGTCGTTTCTT 57.940 40.909 0.00 0.00 0.00 2.52
352 354 4.442706 TGCTCTTTCTCTGTCGTTTCTTT 58.557 39.130 0.00 0.00 0.00 2.52
353 355 4.876107 TGCTCTTTCTCTGTCGTTTCTTTT 59.124 37.500 0.00 0.00 0.00 2.27
354 356 5.201181 GCTCTTTCTCTGTCGTTTCTTTTG 58.799 41.667 0.00 0.00 0.00 2.44
355 357 5.734855 TCTTTCTCTGTCGTTTCTTTTGG 57.265 39.130 0.00 0.00 0.00 3.28
356 358 4.574828 TCTTTCTCTGTCGTTTCTTTTGGG 59.425 41.667 0.00 0.00 0.00 4.12
357 359 2.218603 TCTCTGTCGTTTCTTTTGGGC 58.781 47.619 0.00 0.00 0.00 5.36
358 360 0.941542 TCTGTCGTTTCTTTTGGGCG 59.058 50.000 0.00 0.00 0.00 6.13
359 361 0.661020 CTGTCGTTTCTTTTGGGCGT 59.339 50.000 0.00 0.00 0.00 5.68
360 362 0.378962 TGTCGTTTCTTTTGGGCGTG 59.621 50.000 0.00 0.00 0.00 5.34
361 363 0.658897 GTCGTTTCTTTTGGGCGTGA 59.341 50.000 0.00 0.00 0.00 4.35
362 364 0.658897 TCGTTTCTTTTGGGCGTGAC 59.341 50.000 0.00 0.00 0.00 3.67
363 365 0.661020 CGTTTCTTTTGGGCGTGACT 59.339 50.000 0.00 0.00 0.00 3.41
364 366 1.596954 CGTTTCTTTTGGGCGTGACTG 60.597 52.381 0.00 0.00 0.00 3.51
365 367 1.404035 GTTTCTTTTGGGCGTGACTGT 59.596 47.619 0.00 0.00 0.00 3.55
366 368 1.021202 TTCTTTTGGGCGTGACTGTG 58.979 50.000 0.00 0.00 0.00 3.66
367 369 1.008538 CTTTTGGGCGTGACTGTGC 60.009 57.895 0.00 0.00 0.00 4.57
368 370 1.447317 CTTTTGGGCGTGACTGTGCT 61.447 55.000 0.00 0.00 0.00 4.40
369 371 1.723608 TTTTGGGCGTGACTGTGCTG 61.724 55.000 0.00 0.00 0.00 4.41
371 373 4.996434 GGGCGTGACTGTGCTGCT 62.996 66.667 0.00 0.00 0.00 4.24
372 374 2.974698 GGCGTGACTGTGCTGCTT 60.975 61.111 0.00 0.00 0.00 3.91
373 375 2.553268 GCGTGACTGTGCTGCTTC 59.447 61.111 0.00 0.00 0.00 3.86
374 376 2.959357 GCGTGACTGTGCTGCTTCC 61.959 63.158 0.00 0.00 0.00 3.46
375 377 2.661566 CGTGACTGTGCTGCTTCCG 61.662 63.158 0.00 0.00 0.00 4.30
376 378 2.666190 TGACTGTGCTGCTTCCGC 60.666 61.111 0.00 0.00 0.00 5.54
377 379 3.426568 GACTGTGCTGCTTCCGCC 61.427 66.667 0.00 0.00 34.43 6.13
387 389 3.399181 CTTCCGCCCCAGCACCTA 61.399 66.667 0.00 0.00 39.83 3.08
388 390 2.690881 TTCCGCCCCAGCACCTAT 60.691 61.111 0.00 0.00 39.83 2.57
389 391 2.666596 CTTCCGCCCCAGCACCTATC 62.667 65.000 0.00 0.00 39.83 2.08
390 392 4.256180 CCGCCCCAGCACCTATCC 62.256 72.222 0.00 0.00 39.83 2.59
391 393 3.164269 CGCCCCAGCACCTATCCT 61.164 66.667 0.00 0.00 39.83 3.24
392 394 2.746375 CGCCCCAGCACCTATCCTT 61.746 63.158 0.00 0.00 39.83 3.36
393 395 1.152881 GCCCCAGCACCTATCCTTG 60.153 63.158 0.00 0.00 39.53 3.61
394 396 1.926426 GCCCCAGCACCTATCCTTGT 61.926 60.000 0.00 0.00 39.53 3.16
395 397 1.507140 CCCCAGCACCTATCCTTGTA 58.493 55.000 0.00 0.00 0.00 2.41
396 398 1.141053 CCCCAGCACCTATCCTTGTAC 59.859 57.143 0.00 0.00 0.00 2.90
397 399 1.202533 CCCAGCACCTATCCTTGTACG 60.203 57.143 0.00 0.00 0.00 3.67
398 400 1.202533 CCAGCACCTATCCTTGTACGG 60.203 57.143 0.00 0.00 0.00 4.02
399 401 0.464452 AGCACCTATCCTTGTACGGC 59.536 55.000 0.00 0.00 0.00 5.68
400 402 0.464452 GCACCTATCCTTGTACGGCT 59.536 55.000 0.00 0.00 0.00 5.52
401 403 1.134491 GCACCTATCCTTGTACGGCTT 60.134 52.381 0.00 0.00 0.00 4.35
402 404 2.550978 CACCTATCCTTGTACGGCTTG 58.449 52.381 0.00 0.00 0.00 4.01
403 405 1.485066 ACCTATCCTTGTACGGCTTGG 59.515 52.381 0.00 0.00 0.00 3.61
404 406 1.485066 CCTATCCTTGTACGGCTTGGT 59.515 52.381 0.00 0.00 0.00 3.67
405 407 2.093128 CCTATCCTTGTACGGCTTGGTT 60.093 50.000 0.00 0.00 0.00 3.67
406 408 1.821216 ATCCTTGTACGGCTTGGTTG 58.179 50.000 0.00 0.00 0.00 3.77
407 409 0.250553 TCCTTGTACGGCTTGGTTGG 60.251 55.000 0.00 0.00 0.00 3.77
408 410 0.536460 CCTTGTACGGCTTGGTTGGT 60.536 55.000 0.00 0.00 0.00 3.67
409 411 1.314730 CTTGTACGGCTTGGTTGGTT 58.685 50.000 0.00 0.00 0.00 3.67
410 412 1.001815 CTTGTACGGCTTGGTTGGTTG 60.002 52.381 0.00 0.00 0.00 3.77
411 413 1.284715 GTACGGCTTGGTTGGTTGC 59.715 57.895 0.00 0.00 0.00 4.17
412 414 1.149627 TACGGCTTGGTTGGTTGCT 59.850 52.632 0.00 0.00 0.00 3.91
413 415 0.466555 TACGGCTTGGTTGGTTGCTT 60.467 50.000 0.00 0.00 0.00 3.91
414 416 1.326951 ACGGCTTGGTTGGTTGCTTT 61.327 50.000 0.00 0.00 0.00 3.51
415 417 0.875474 CGGCTTGGTTGGTTGCTTTG 60.875 55.000 0.00 0.00 0.00 2.77
416 418 0.177836 GGCTTGGTTGGTTGCTTTGT 59.822 50.000 0.00 0.00 0.00 2.83
417 419 1.410882 GGCTTGGTTGGTTGCTTTGTA 59.589 47.619 0.00 0.00 0.00 2.41
418 420 2.037121 GGCTTGGTTGGTTGCTTTGTAT 59.963 45.455 0.00 0.00 0.00 2.29
419 421 3.257127 GGCTTGGTTGGTTGCTTTGTATA 59.743 43.478 0.00 0.00 0.00 1.47
420 422 4.234574 GCTTGGTTGGTTGCTTTGTATAC 58.765 43.478 0.00 0.00 0.00 1.47
421 423 4.261825 GCTTGGTTGGTTGCTTTGTATACA 60.262 41.667 0.08 0.08 0.00 2.29
422 424 5.737635 GCTTGGTTGGTTGCTTTGTATACAA 60.738 40.000 14.35 14.35 0.00 2.41
423 425 5.854010 TGGTTGGTTGCTTTGTATACAAA 57.146 34.783 25.48 25.48 42.90 2.83
455 457 4.514781 ACCCTTTTTCGGAATAGCAAAC 57.485 40.909 0.00 0.00 0.00 2.93
499 501 2.103771 AGCCAGACATGATATGCGAGTT 59.896 45.455 0.00 0.00 0.00 3.01
612 614 1.037030 CGGGTGCCTTATTGTGCCAT 61.037 55.000 0.00 0.00 0.00 4.40
647 649 9.612066 TTTTTATCAAAATGCAAGTTCTTCCTT 57.388 25.926 0.00 0.00 0.00 3.36
694 696 8.228035 TGATATGCTCATTTCAATGAATGTGA 57.772 30.769 0.00 4.18 44.20 3.58
749 751 1.451936 GTGTGGAAGGTGTGGAGCT 59.548 57.895 0.00 0.00 0.00 4.09
762 764 4.792804 GAGCTGCTGCCACTCCCC 62.793 72.222 7.01 0.00 40.80 4.81
816 818 3.869272 CTCATCCGCAAGCACGCC 61.869 66.667 0.00 0.00 0.00 5.68
897 899 4.514441 ACATGTGTTTCTCTTGCTTCTCTG 59.486 41.667 0.00 0.00 0.00 3.35
944 946 5.494724 TGACATTTATCTTCTCAGCTTGCT 58.505 37.500 0.00 0.00 0.00 3.91
945 947 6.643388 TGACATTTATCTTCTCAGCTTGCTA 58.357 36.000 0.00 0.00 0.00 3.49
995 997 2.111043 CGGTCAGTGCCAGTTGGT 59.889 61.111 0.00 0.00 37.57 3.67
1033 1036 1.449353 GAGCAGATCCGATGGGCTT 59.551 57.895 5.17 0.00 34.44 4.35
1188 1197 3.622163 CACATTGCCTTGCTTTGTTGAAA 59.378 39.130 0.00 0.00 0.00 2.69
1224 1233 0.946221 CAAGGCTGCGTTCGAGTTCT 60.946 55.000 4.36 0.00 0.00 3.01
1308 1321 5.519808 TGGAAGAGATAAAGGCTGTCTCTA 58.480 41.667 20.75 8.75 45.85 2.43
1313 1326 3.969976 AGATAAAGGCTGTCTCTATGGCA 59.030 43.478 0.00 0.00 0.00 4.92
1358 1371 7.174599 ACAGAAACTCTTGATTTCTTCATGGAG 59.825 37.037 0.00 0.00 42.46 3.86
1424 1437 4.684724 AGATCCCAACTACACCTAGAACA 58.315 43.478 0.00 0.00 0.00 3.18
1425 1438 5.091552 AGATCCCAACTACACCTAGAACAA 58.908 41.667 0.00 0.00 0.00 2.83
1463 1476 1.416401 TCACAGTTCCCTTGTCTGGAC 59.584 52.381 0.00 0.00 34.02 4.02
1492 1505 9.224267 GAATATGCACTTCCATAGTATGATGTT 57.776 33.333 11.91 0.36 34.56 2.71
1497 1510 6.540189 GCACTTCCATAGTATGATGTTCTTGT 59.460 38.462 11.91 0.00 34.56 3.16
1817 1830 3.689347 TCATTAGTGCACCTGCTGATTT 58.311 40.909 14.63 0.00 42.66 2.17
1822 1835 2.431782 AGTGCACCTGCTGATTTGTTTT 59.568 40.909 14.63 0.00 42.66 2.43
1843 1856 9.057089 TGTTTTACTTGTTGTTTCCAATTGTTT 57.943 25.926 4.43 0.00 32.11 2.83
1860 1873 2.994990 TTGTGTGGTACAAGACGCC 58.005 52.632 0.00 0.00 44.07 5.68
1877 1890 1.688772 GCCCATGCAAGTGATGATCT 58.311 50.000 0.00 0.00 37.47 2.75
1891 1904 7.192852 AGTGATGATCTAGAAGACAAACCAT 57.807 36.000 0.00 0.00 0.00 3.55
1950 1963 8.584063 TTGAATATCCAGGTTAAACCCTTAAC 57.416 34.615 0.00 0.13 44.20 2.01
1960 1973 1.601166 AACCCTTAACACGGTCTTGC 58.399 50.000 0.00 0.00 0.00 4.01
2041 2054 2.360350 CACCATGAGCCCAGCGTT 60.360 61.111 0.00 0.00 0.00 4.84
2098 2111 0.830648 ACATGTAGCTGTACCGGCAT 59.169 50.000 0.00 0.00 38.37 4.40
2118 2131 1.284982 CGGCTCCTCTTGTTGACACG 61.285 60.000 0.00 0.00 0.00 4.49
2129 2142 5.701855 TCTTGTTGACACGTCGATTATGTA 58.298 37.500 0.00 0.00 0.00 2.29
2133 2146 1.442087 GACACGTCGATTATGTACGCG 59.558 52.381 3.53 3.53 40.18 6.01
2218 2231 8.267894 ACTAACCAAATACTGAGTATCTGCATT 58.732 33.333 5.45 2.82 37.61 3.56
2274 2287 3.788227 ACACTTGCTATTGGAGTGGAA 57.212 42.857 7.53 0.00 43.81 3.53
2311 2324 0.744281 TCATGCAAGATCGTCCGCTA 59.256 50.000 0.00 0.00 0.00 4.26
2340 2353 5.474876 CACTCCAATTAGAAACAAGAGGCTT 59.525 40.000 0.00 0.00 0.00 4.35
2342 2355 6.207614 ACTCCAATTAGAAACAAGAGGCTTTC 59.792 38.462 0.00 0.00 0.00 2.62
2350 2363 4.689612 AACAAGAGGCTTTCTGTGTCTA 57.310 40.909 0.00 0.00 35.91 2.59
2353 2366 3.305398 AGAGGCTTTCTGTGTCTAACG 57.695 47.619 0.00 0.00 33.93 3.18
2356 2369 1.194772 GGCTTTCTGTGTCTAACGTGC 59.805 52.381 0.00 0.00 0.00 5.34
2368 2381 1.131126 CTAACGTGCATGAAAGCCCAG 59.869 52.381 14.17 0.00 0.00 4.45
2371 2384 1.065491 ACGTGCATGAAAGCCCAGATA 60.065 47.619 14.17 0.00 0.00 1.98
2419 2432 5.316167 ACCAGAACTGAATGTCTATGCAAA 58.684 37.500 3.19 0.00 0.00 3.68
2422 2435 6.312487 CAGAACTGAATGTCTATGCAAACTG 58.688 40.000 0.00 0.00 0.00 3.16
2461 2474 1.805943 TCTGATGTGCATTTGGTGACG 59.194 47.619 0.00 0.00 0.00 4.35
2484 2497 2.092592 TGCAGCAGTCATTCATCCAGAT 60.093 45.455 0.00 0.00 0.00 2.90
2489 2502 4.132336 GCAGTCATTCATCCAGATGCTTA 58.868 43.478 2.63 0.00 38.65 3.09
2530 2543 1.263356 TGGGTACTCACCTTTCGAGG 58.737 55.000 0.00 0.00 45.04 4.63
2531 2544 1.264295 GGGTACTCACCTTTCGAGGT 58.736 55.000 0.00 0.00 45.04 3.85
2546 2559 2.093106 CGAGGTAGAGCTGGTACAAGT 58.907 52.381 0.00 0.00 38.70 3.16
2547 2560 2.097791 CGAGGTAGAGCTGGTACAAGTC 59.902 54.545 0.00 0.00 38.70 3.01
2588 2601 5.973651 TGTGATGAATTCTACGAGAATGC 57.026 39.130 7.05 8.89 43.67 3.56
2598 2611 2.401583 ACGAGAATGCCATGTTGCTA 57.598 45.000 0.00 0.00 0.00 3.49
2599 2612 2.923121 ACGAGAATGCCATGTTGCTAT 58.077 42.857 0.00 0.00 0.00 2.97
2687 2700 4.380531 AGACCAACAACTGTACTGACATG 58.619 43.478 6.77 0.00 34.24 3.21
2700 2713 6.307776 TGTACTGACATGGTTTTGGGAATTA 58.692 36.000 0.00 0.00 0.00 1.40
2725 2738 1.851658 CAGGGTTTGGTTTGAAAGCG 58.148 50.000 2.47 0.00 34.74 4.68
2728 2741 2.159156 AGGGTTTGGTTTGAAAGCGTTC 60.159 45.455 5.34 5.34 34.74 3.95
2859 2872 5.663631 AGGGAGATTATGATGATGGAGAGT 58.336 41.667 0.00 0.00 0.00 3.24
2874 2887 2.180276 GAGAGTGTTGGCCTTCCTCTA 58.820 52.381 3.32 0.00 32.85 2.43
2902 2915 2.485479 GGGATTGTATCGCCTGATGTGT 60.485 50.000 0.00 0.00 35.99 3.72
2904 2917 3.457234 GATTGTATCGCCTGATGTGTCA 58.543 45.455 0.00 0.00 35.99 3.58
2954 2967 5.748152 CACTGTTAGGTTGAAATTTGTGTGG 59.252 40.000 0.00 0.00 0.00 4.17
2959 2972 4.881920 AGGTTGAAATTTGTGTGGCATAC 58.118 39.130 7.51 7.51 0.00 2.39
2997 3010 3.753815 TCATGATGTTTGTTGCTCTGGA 58.246 40.909 0.00 0.00 0.00 3.86
3140 3153 6.383415 TGCAAATAATGTTCGGGTTAAGTTC 58.617 36.000 0.00 0.00 0.00 3.01
3239 3253 1.278985 CAATCACTAGGGAGTGGTGCA 59.721 52.381 14.68 0.00 46.83 4.57
3241 3255 2.092753 AATCACTAGGGAGTGGTGCATG 60.093 50.000 0.00 0.00 46.83 4.06
3414 3428 5.046591 GGTGGAACATGGATATCTCGGATTA 60.047 44.000 2.05 0.00 44.52 1.75
3444 3458 2.307049 GTACAACAAGAACATGCACGC 58.693 47.619 0.00 0.00 0.00 5.34
3527 3541 7.697352 TTGTCAGTGTTTAATGCATTTCTTG 57.303 32.000 18.75 8.21 0.00 3.02
3605 3619 0.170561 GTACACGTCTGGAGCACGAT 59.829 55.000 0.07 0.00 39.75 3.73
3698 3712 4.804108 TGACAACAAAGTTCCACTTGTTG 58.196 39.130 20.41 20.41 43.92 3.33
3756 3770 4.279145 AGGATGTTGTACGAGACTATGGT 58.721 43.478 0.00 0.00 0.00 3.55
3773 3787 1.969923 TGGTGGCCAAAGGAAATTCTG 59.030 47.619 7.24 0.00 0.00 3.02
3783 3797 1.902508 AGGAAATTCTGCTCCTCGTCA 59.097 47.619 0.00 0.00 37.53 4.35
3865 3879 1.137675 GTCCGCGGGTTTAGGTTAGAT 59.862 52.381 27.83 0.00 0.00 1.98
3931 3945 3.585862 GATTAGCGAGGTTGAAGTGTGA 58.414 45.455 0.00 0.00 0.00 3.58
3934 3948 2.851195 AGCGAGGTTGAAGTGTGATTT 58.149 42.857 0.00 0.00 0.00 2.17
3936 3950 2.095718 GCGAGGTTGAAGTGTGATTTCC 60.096 50.000 0.00 0.00 0.00 3.13
3939 3953 3.490348 AGGTTGAAGTGTGATTTCCAGG 58.510 45.455 0.00 0.00 0.00 4.45
3953 3967 0.107831 TCCAGGACGAACTTGGGTTG 59.892 55.000 13.08 0.00 44.51 3.77
4013 4027 0.393077 CTGTCAACGAACCTCCCTGT 59.607 55.000 0.00 0.00 0.00 4.00
4023 4037 2.044793 ACCTCCCTGTGAAGGAATCA 57.955 50.000 0.00 0.00 35.05 2.57
4104 4118 6.644592 TCCTTGTTTGAATTTTGAAATAGCCG 59.355 34.615 0.00 0.00 0.00 5.52
4108 4122 6.758886 TGTTTGAATTTTGAAATAGCCGTTGT 59.241 30.769 0.00 0.00 0.00 3.32
4112 4126 4.920640 TTTTGAAATAGCCGTTGTTGGA 57.079 36.364 0.00 0.00 0.00 3.53
4113 4127 5.461032 TTTTGAAATAGCCGTTGTTGGAT 57.539 34.783 0.00 0.00 0.00 3.41
4114 4128 4.433186 TTGAAATAGCCGTTGTTGGATG 57.567 40.909 0.00 0.00 0.00 3.51
4115 4129 2.163412 TGAAATAGCCGTTGTTGGATGC 59.837 45.455 0.00 0.00 0.00 3.91
4116 4130 0.732571 AATAGCCGTTGTTGGATGCG 59.267 50.000 0.00 0.00 0.00 4.73
4117 4131 0.392461 ATAGCCGTTGTTGGATGCGT 60.392 50.000 0.00 0.00 0.00 5.24
4118 4132 1.295357 TAGCCGTTGTTGGATGCGTG 61.295 55.000 0.00 0.00 0.00 5.34
4119 4133 2.903547 GCCGTTGTTGGATGCGTGT 61.904 57.895 0.00 0.00 0.00 4.49
4120 4134 1.082169 CCGTTGTTGGATGCGTGTG 60.082 57.895 0.00 0.00 0.00 3.82
4121 4135 1.646540 CGTTGTTGGATGCGTGTGT 59.353 52.632 0.00 0.00 0.00 3.72
4122 4136 0.862490 CGTTGTTGGATGCGTGTGTA 59.138 50.000 0.00 0.00 0.00 2.90
4123 4137 1.136363 CGTTGTTGGATGCGTGTGTAG 60.136 52.381 0.00 0.00 0.00 2.74
4124 4138 1.871039 GTTGTTGGATGCGTGTGTAGT 59.129 47.619 0.00 0.00 0.00 2.73
4125 4139 3.061322 GTTGTTGGATGCGTGTGTAGTA 58.939 45.455 0.00 0.00 0.00 1.82
4126 4140 2.679450 TGTTGGATGCGTGTGTAGTAC 58.321 47.619 0.00 0.00 0.00 2.73
4127 4141 1.652124 GTTGGATGCGTGTGTAGTACG 59.348 52.381 0.00 0.00 43.93 3.67
4134 4148 1.545759 CGTGTGTAGTACGCCAGATG 58.454 55.000 11.25 0.00 36.43 2.90
4135 4149 1.797713 CGTGTGTAGTACGCCAGATGG 60.798 57.143 11.25 0.00 36.43 3.51
4177 4214 5.183331 TGAGTGCATCCGTCTATAAGTATCC 59.817 44.000 0.00 0.00 0.00 2.59
4203 4247 1.130054 TCCTTGCCAGCCTCTCAAGT 61.130 55.000 0.00 0.00 36.41 3.16
4232 4276 3.512680 CCACATCTAGTTGTTCTCGTCC 58.487 50.000 3.61 0.00 0.00 4.79
4272 4316 2.425312 GCTCTTCTTCCTCACGATCTCA 59.575 50.000 0.00 0.00 0.00 3.27
4293 4337 6.771267 TCTCATTATTCCGCTAGTAGAGTTCA 59.229 38.462 0.00 0.00 0.00 3.18
4345 4389 1.041437 GGCAAGGTCCGCTAGACTAT 58.959 55.000 0.00 0.00 45.54 2.12
4360 4404 2.828520 AGACTATGAGCCATATGACCCG 59.171 50.000 3.65 0.00 0.00 5.28
4362 4406 2.972713 ACTATGAGCCATATGACCCGTT 59.027 45.455 3.65 0.00 0.00 4.44
4421 4465 1.153353 GTGGAGCGACGAAAATCCAA 58.847 50.000 11.50 0.00 43.22 3.53
4451 4495 7.544915 GGAGGTACAGAAGTTGTTACTATTCAC 59.455 40.741 0.00 0.00 41.29 3.18
4471 4515 5.717119 TCACGGGTAAGTAAGCTCTAAAAG 58.283 41.667 0.00 0.00 0.00 2.27
4472 4516 5.244626 TCACGGGTAAGTAAGCTCTAAAAGT 59.755 40.000 0.00 0.00 0.00 2.66
4519 4563 6.928979 TTCCTTTTCATTAGTCGTGTTCAA 57.071 33.333 0.00 0.00 0.00 2.69
4579 4623 1.005450 GGGGAGGTTGCCAGTATTTCA 59.995 52.381 0.00 0.00 0.00 2.69
4680 4724 1.523758 GGTTGAACTCGAACCTGCAT 58.476 50.000 0.00 0.00 39.94 3.96
4688 4732 2.093500 ACTCGAACCTGCATGATGCTAA 60.093 45.455 19.19 0.00 45.31 3.09
4689 4733 3.136763 CTCGAACCTGCATGATGCTAAT 58.863 45.455 19.19 2.18 45.31 1.73
4690 4734 2.874086 TCGAACCTGCATGATGCTAATG 59.126 45.455 19.19 6.73 45.31 1.90
4691 4735 2.874086 CGAACCTGCATGATGCTAATGA 59.126 45.455 19.19 0.00 45.31 2.57
4704 4748 2.739292 GCTAATGAGCCATTGCATGTG 58.261 47.619 9.79 0.00 43.49 3.21
4741 4787 1.615502 GTCGTCTCCGTGAAGCTAAC 58.384 55.000 0.00 0.00 35.01 2.34
4745 4791 1.467734 GTCTCCGTGAAGCTAACGAGA 59.532 52.381 20.16 16.77 43.68 4.04
4783 4829 1.076777 AGCTGTGGTGCCAGTTGTT 60.077 52.632 0.00 0.00 34.84 2.83
4814 4860 0.603065 GAGGTTCAAACACATGGCCC 59.397 55.000 0.00 0.00 0.00 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 51 1.302192 GGCGTGCACCTTACCAAGA 60.302 57.895 12.15 0.00 0.00 3.02
167 169 1.966762 CGGCCTTCATGGTTTTGCT 59.033 52.632 0.00 0.00 38.35 3.91
171 173 3.061848 CGGCGGCCTTCATGGTTT 61.062 61.111 18.34 0.00 38.35 3.27
172 174 4.344865 ACGGCGGCCTTCATGGTT 62.345 61.111 18.34 0.00 38.35 3.67
229 231 1.807573 GCTCCAAGACTCCGAAGCG 60.808 63.158 0.00 0.00 0.00 4.68
232 234 1.272536 ACTAGGCTCCAAGACTCCGAA 60.273 52.381 0.00 0.00 33.88 4.30
233 235 0.331954 ACTAGGCTCCAAGACTCCGA 59.668 55.000 0.00 0.00 33.88 4.55
235 237 0.827368 CCACTAGGCTCCAAGACTCC 59.173 60.000 0.00 0.00 33.88 3.85
237 239 2.183679 CTTCCACTAGGCTCCAAGACT 58.816 52.381 0.00 0.00 37.37 3.24
238 240 2.180276 TCTTCCACTAGGCTCCAAGAC 58.820 52.381 0.00 0.00 33.74 3.01
239 241 2.623418 TCTTCCACTAGGCTCCAAGA 57.377 50.000 0.00 0.00 33.74 3.02
240 242 2.103941 GGATCTTCCACTAGGCTCCAAG 59.896 54.545 0.00 0.00 36.28 3.61
241 243 2.119495 GGATCTTCCACTAGGCTCCAA 58.881 52.381 0.00 0.00 36.28 3.53
242 244 1.692762 GGGATCTTCCACTAGGCTCCA 60.693 57.143 0.00 0.00 38.64 3.86
243 245 1.052617 GGGATCTTCCACTAGGCTCC 58.947 60.000 0.00 0.00 38.64 4.70
244 246 0.676736 CGGGATCTTCCACTAGGCTC 59.323 60.000 0.00 0.00 38.64 4.70
245 247 0.760945 CCGGGATCTTCCACTAGGCT 60.761 60.000 0.00 0.00 38.64 4.58
246 248 1.049289 ACCGGGATCTTCCACTAGGC 61.049 60.000 6.32 0.00 38.64 3.93
247 249 0.753262 CACCGGGATCTTCCACTAGG 59.247 60.000 6.32 0.00 38.64 3.02
248 250 0.753262 CCACCGGGATCTTCCACTAG 59.247 60.000 6.32 0.00 38.64 2.57
249 251 2.910579 CCACCGGGATCTTCCACTA 58.089 57.895 6.32 0.00 38.64 2.74
250 252 3.727387 CCACCGGGATCTTCCACT 58.273 61.111 6.32 0.00 38.64 4.00
271 273 3.843240 GAAGCCTCGCGAACGCTG 61.843 66.667 25.78 8.12 39.84 5.18
272 274 3.575351 AAGAAGCCTCGCGAACGCT 62.575 57.895 21.19 21.19 39.84 5.07
273 275 3.072666 GAAGAAGCCTCGCGAACGC 62.073 63.158 17.65 17.65 39.84 4.84
274 276 2.778997 CGAAGAAGCCTCGCGAACG 61.779 63.158 11.33 4.11 42.01 3.95
275 277 1.282930 AACGAAGAAGCCTCGCGAAC 61.283 55.000 11.33 5.33 0.00 3.95
276 278 0.599204 AAACGAAGAAGCCTCGCGAA 60.599 50.000 11.33 0.00 0.00 4.70
277 279 0.599204 AAAACGAAGAAGCCTCGCGA 60.599 50.000 9.26 9.26 0.00 5.87
278 280 0.179248 GAAAACGAAGAAGCCTCGCG 60.179 55.000 0.00 0.00 0.00 5.87
279 281 0.179248 CGAAAACGAAGAAGCCTCGC 60.179 55.000 0.00 0.00 0.00 5.03
280 282 1.137513 ACGAAAACGAAGAAGCCTCG 58.862 50.000 0.00 0.00 0.00 4.63
281 283 2.542595 TCAACGAAAACGAAGAAGCCTC 59.457 45.455 0.00 0.00 0.00 4.70
282 284 2.557317 TCAACGAAAACGAAGAAGCCT 58.443 42.857 0.00 0.00 0.00 4.58
283 285 3.479949 GATCAACGAAAACGAAGAAGCC 58.520 45.455 0.00 0.00 0.00 4.35
284 286 3.479949 GGATCAACGAAAACGAAGAAGC 58.520 45.455 0.00 0.00 0.00 3.86
285 287 3.722123 CGGATCAACGAAAACGAAGAAG 58.278 45.455 0.00 0.00 35.47 2.85
286 288 2.096614 GCGGATCAACGAAAACGAAGAA 60.097 45.455 0.00 0.00 35.47 2.52
287 289 1.458064 GCGGATCAACGAAAACGAAGA 59.542 47.619 0.00 0.00 35.47 2.87
288 290 1.463528 GGCGGATCAACGAAAACGAAG 60.464 52.381 0.00 0.00 35.47 3.79
289 291 0.513820 GGCGGATCAACGAAAACGAA 59.486 50.000 0.00 0.00 35.47 3.85
290 292 1.619526 CGGCGGATCAACGAAAACGA 61.620 55.000 0.00 0.00 35.47 3.85
291 293 1.225637 CGGCGGATCAACGAAAACG 60.226 57.895 0.00 0.00 35.47 3.60
292 294 0.236449 AACGGCGGATCAACGAAAAC 59.764 50.000 13.24 0.00 35.47 2.43
293 295 0.236187 CAACGGCGGATCAACGAAAA 59.764 50.000 13.24 0.00 35.47 2.29
294 296 0.881159 ACAACGGCGGATCAACGAAA 60.881 50.000 13.24 0.00 35.47 3.46
295 297 1.286354 GACAACGGCGGATCAACGAA 61.286 55.000 13.24 0.00 35.47 3.85
296 298 1.735198 GACAACGGCGGATCAACGA 60.735 57.895 13.24 0.00 35.47 3.85
297 299 2.776072 GACAACGGCGGATCAACG 59.224 61.111 13.24 0.00 0.00 4.10
298 300 2.776072 CGACAACGGCGGATCAAC 59.224 61.111 13.24 0.00 35.72 3.18
308 310 2.399396 AGAAACAAATGCCGACAACG 57.601 45.000 0.00 0.00 39.43 4.10
309 311 4.781883 GCAAAAGAAACAAATGCCGACAAC 60.782 41.667 0.00 0.00 0.00 3.32
310 312 3.308323 GCAAAAGAAACAAATGCCGACAA 59.692 39.130 0.00 0.00 0.00 3.18
311 313 2.863137 GCAAAAGAAACAAATGCCGACA 59.137 40.909 0.00 0.00 0.00 4.35
312 314 3.123050 AGCAAAAGAAACAAATGCCGAC 58.877 40.909 0.00 0.00 37.73 4.79
313 315 3.068024 AGAGCAAAAGAAACAAATGCCGA 59.932 39.130 0.00 0.00 37.73 5.54
314 316 3.383761 AGAGCAAAAGAAACAAATGCCG 58.616 40.909 0.00 0.00 37.73 5.69
315 317 5.525012 AGAAAGAGCAAAAGAAACAAATGCC 59.475 36.000 0.00 0.00 37.73 4.40
316 318 6.478016 AGAGAAAGAGCAAAAGAAACAAATGC 59.522 34.615 0.00 0.00 37.28 3.56
317 319 7.490402 ACAGAGAAAGAGCAAAAGAAACAAATG 59.510 33.333 0.00 0.00 0.00 2.32
318 320 7.550712 ACAGAGAAAGAGCAAAAGAAACAAAT 58.449 30.769 0.00 0.00 0.00 2.32
319 321 6.924111 ACAGAGAAAGAGCAAAAGAAACAAA 58.076 32.000 0.00 0.00 0.00 2.83
320 322 6.515272 ACAGAGAAAGAGCAAAAGAAACAA 57.485 33.333 0.00 0.00 0.00 2.83
321 323 5.220662 CGACAGAGAAAGAGCAAAAGAAACA 60.221 40.000 0.00 0.00 0.00 2.83
322 324 5.201181 CGACAGAGAAAGAGCAAAAGAAAC 58.799 41.667 0.00 0.00 0.00 2.78
323 325 4.876107 ACGACAGAGAAAGAGCAAAAGAAA 59.124 37.500 0.00 0.00 0.00 2.52
324 326 4.442706 ACGACAGAGAAAGAGCAAAAGAA 58.557 39.130 0.00 0.00 0.00 2.52
325 327 4.060038 ACGACAGAGAAAGAGCAAAAGA 57.940 40.909 0.00 0.00 0.00 2.52
326 328 4.802876 AACGACAGAGAAAGAGCAAAAG 57.197 40.909 0.00 0.00 0.00 2.27
327 329 4.876107 AGAAACGACAGAGAAAGAGCAAAA 59.124 37.500 0.00 0.00 0.00 2.44
328 330 4.442706 AGAAACGACAGAGAAAGAGCAAA 58.557 39.130 0.00 0.00 0.00 3.68
329 331 4.060038 AGAAACGACAGAGAAAGAGCAA 57.940 40.909 0.00 0.00 0.00 3.91
330 332 3.735237 AGAAACGACAGAGAAAGAGCA 57.265 42.857 0.00 0.00 0.00 4.26
331 333 5.201181 CAAAAGAAACGACAGAGAAAGAGC 58.799 41.667 0.00 0.00 0.00 4.09
332 334 5.277538 CCCAAAAGAAACGACAGAGAAAGAG 60.278 44.000 0.00 0.00 0.00 2.85
333 335 4.574828 CCCAAAAGAAACGACAGAGAAAGA 59.425 41.667 0.00 0.00 0.00 2.52
334 336 4.789802 GCCCAAAAGAAACGACAGAGAAAG 60.790 45.833 0.00 0.00 0.00 2.62
335 337 3.066203 GCCCAAAAGAAACGACAGAGAAA 59.934 43.478 0.00 0.00 0.00 2.52
336 338 2.616842 GCCCAAAAGAAACGACAGAGAA 59.383 45.455 0.00 0.00 0.00 2.87
337 339 2.218603 GCCCAAAAGAAACGACAGAGA 58.781 47.619 0.00 0.00 0.00 3.10
338 340 1.069906 CGCCCAAAAGAAACGACAGAG 60.070 52.381 0.00 0.00 0.00 3.35
339 341 0.941542 CGCCCAAAAGAAACGACAGA 59.058 50.000 0.00 0.00 0.00 3.41
340 342 0.661020 ACGCCCAAAAGAAACGACAG 59.339 50.000 0.00 0.00 0.00 3.51
341 343 0.378962 CACGCCCAAAAGAAACGACA 59.621 50.000 0.00 0.00 0.00 4.35
342 344 0.658897 TCACGCCCAAAAGAAACGAC 59.341 50.000 0.00 0.00 0.00 4.34
343 345 0.658897 GTCACGCCCAAAAGAAACGA 59.341 50.000 0.00 0.00 0.00 3.85
344 346 0.661020 AGTCACGCCCAAAAGAAACG 59.339 50.000 0.00 0.00 0.00 3.60
345 347 1.404035 ACAGTCACGCCCAAAAGAAAC 59.596 47.619 0.00 0.00 0.00 2.78
346 348 1.403679 CACAGTCACGCCCAAAAGAAA 59.596 47.619 0.00 0.00 0.00 2.52
347 349 1.021202 CACAGTCACGCCCAAAAGAA 58.979 50.000 0.00 0.00 0.00 2.52
348 350 1.444119 GCACAGTCACGCCCAAAAGA 61.444 55.000 0.00 0.00 0.00 2.52
349 351 1.008538 GCACAGTCACGCCCAAAAG 60.009 57.895 0.00 0.00 0.00 2.27
350 352 1.453015 AGCACAGTCACGCCCAAAA 60.453 52.632 0.00 0.00 0.00 2.44
351 353 2.186160 CAGCACAGTCACGCCCAAA 61.186 57.895 0.00 0.00 0.00 3.28
352 354 2.591429 CAGCACAGTCACGCCCAA 60.591 61.111 0.00 0.00 0.00 4.12
354 356 4.996434 AGCAGCACAGTCACGCCC 62.996 66.667 0.00 0.00 0.00 6.13
355 357 2.959357 GAAGCAGCACAGTCACGCC 61.959 63.158 0.00 0.00 0.00 5.68
356 358 2.553268 GAAGCAGCACAGTCACGC 59.447 61.111 0.00 0.00 0.00 5.34
357 359 2.661566 CGGAAGCAGCACAGTCACG 61.662 63.158 0.00 0.00 0.00 4.35
358 360 3.248029 CGGAAGCAGCACAGTCAC 58.752 61.111 0.00 0.00 0.00 3.67
370 372 2.666596 GATAGGTGCTGGGGCGGAAG 62.667 65.000 0.00 0.00 42.25 3.46
371 373 2.690881 ATAGGTGCTGGGGCGGAA 60.691 61.111 0.00 0.00 42.25 4.30
372 374 3.161450 GATAGGTGCTGGGGCGGA 61.161 66.667 0.00 0.00 42.25 5.54
373 375 4.256180 GGATAGGTGCTGGGGCGG 62.256 72.222 0.00 0.00 42.25 6.13
374 376 2.746375 AAGGATAGGTGCTGGGGCG 61.746 63.158 0.00 0.00 42.25 6.13
375 377 1.152881 CAAGGATAGGTGCTGGGGC 60.153 63.158 0.00 0.00 39.26 5.80
376 378 1.141053 GTACAAGGATAGGTGCTGGGG 59.859 57.143 0.00 0.00 0.00 4.96
377 379 1.202533 CGTACAAGGATAGGTGCTGGG 60.203 57.143 0.00 0.00 0.00 4.45
378 380 1.202533 CCGTACAAGGATAGGTGCTGG 60.203 57.143 0.00 0.00 0.00 4.85
379 381 1.806623 GCCGTACAAGGATAGGTGCTG 60.807 57.143 0.00 0.00 0.00 4.41
380 382 0.464452 GCCGTACAAGGATAGGTGCT 59.536 55.000 0.00 0.00 0.00 4.40
381 383 0.464452 AGCCGTACAAGGATAGGTGC 59.536 55.000 0.00 0.00 0.00 5.01
382 384 2.550978 CAAGCCGTACAAGGATAGGTG 58.449 52.381 0.00 0.00 0.00 4.00
383 385 1.485066 CCAAGCCGTACAAGGATAGGT 59.515 52.381 0.00 0.00 0.00 3.08
384 386 1.485066 ACCAAGCCGTACAAGGATAGG 59.515 52.381 0.00 0.00 0.00 2.57
385 387 2.936498 CAACCAAGCCGTACAAGGATAG 59.064 50.000 0.00 0.00 0.00 2.08
386 388 2.355310 CCAACCAAGCCGTACAAGGATA 60.355 50.000 0.00 0.00 0.00 2.59
387 389 1.613255 CCAACCAAGCCGTACAAGGAT 60.613 52.381 0.00 0.00 0.00 3.24
388 390 0.250553 CCAACCAAGCCGTACAAGGA 60.251 55.000 0.00 0.00 0.00 3.36
389 391 0.536460 ACCAACCAAGCCGTACAAGG 60.536 55.000 0.00 0.00 0.00 3.61
390 392 1.001815 CAACCAACCAAGCCGTACAAG 60.002 52.381 0.00 0.00 0.00 3.16
391 393 1.025812 CAACCAACCAAGCCGTACAA 58.974 50.000 0.00 0.00 0.00 2.41
392 394 1.448922 GCAACCAACCAAGCCGTACA 61.449 55.000 0.00 0.00 0.00 2.90
393 395 1.170290 AGCAACCAACCAAGCCGTAC 61.170 55.000 0.00 0.00 0.00 3.67
394 396 0.466555 AAGCAACCAACCAAGCCGTA 60.467 50.000 0.00 0.00 0.00 4.02
395 397 1.326951 AAAGCAACCAACCAAGCCGT 61.327 50.000 0.00 0.00 0.00 5.68
396 398 0.875474 CAAAGCAACCAACCAAGCCG 60.875 55.000 0.00 0.00 0.00 5.52
397 399 0.177836 ACAAAGCAACCAACCAAGCC 59.822 50.000 0.00 0.00 0.00 4.35
398 400 2.880963 TACAAAGCAACCAACCAAGC 57.119 45.000 0.00 0.00 0.00 4.01
399 401 5.446143 TGTATACAAAGCAACCAACCAAG 57.554 39.130 2.20 0.00 0.00 3.61
400 402 5.854010 TTGTATACAAAGCAACCAACCAA 57.146 34.783 15.92 0.00 32.11 3.67
401 403 5.854010 TTTGTATACAAAGCAACCAACCA 57.146 34.783 23.91 0.99 40.55 3.67
429 431 3.119245 GCTATTCCGAAAAAGGGTTTCCC 60.119 47.826 0.00 0.00 45.90 3.97
430 432 3.508402 TGCTATTCCGAAAAAGGGTTTCC 59.492 43.478 0.00 0.00 0.00 3.13
431 433 4.776795 TGCTATTCCGAAAAAGGGTTTC 57.223 40.909 0.00 0.00 0.00 2.78
432 434 5.294356 GTTTGCTATTCCGAAAAAGGGTTT 58.706 37.500 0.00 0.00 0.00 3.27
433 435 4.557895 CGTTTGCTATTCCGAAAAAGGGTT 60.558 41.667 0.00 0.00 0.00 4.11
434 436 3.057806 CGTTTGCTATTCCGAAAAAGGGT 60.058 43.478 0.00 0.00 0.00 4.34
435 437 3.189702 TCGTTTGCTATTCCGAAAAAGGG 59.810 43.478 0.00 0.00 0.00 3.95
436 438 4.403453 CTCGTTTGCTATTCCGAAAAAGG 58.597 43.478 0.00 0.00 0.00 3.11
437 439 3.846335 GCTCGTTTGCTATTCCGAAAAAG 59.154 43.478 0.00 0.00 0.00 2.27
438 440 3.500680 AGCTCGTTTGCTATTCCGAAAAA 59.499 39.130 0.00 0.00 42.10 1.94
439 441 3.071479 AGCTCGTTTGCTATTCCGAAAA 58.929 40.909 0.00 0.00 42.10 2.29
440 442 2.671396 GAGCTCGTTTGCTATTCCGAAA 59.329 45.455 0.00 0.00 44.17 3.46
441 443 2.268298 GAGCTCGTTTGCTATTCCGAA 58.732 47.619 0.00 0.00 44.17 4.30
442 444 1.470979 GGAGCTCGTTTGCTATTCCGA 60.471 52.381 7.83 0.00 44.17 4.55
443 445 0.931005 GGAGCTCGTTTGCTATTCCG 59.069 55.000 7.83 0.00 44.17 4.30
444 446 2.317530 AGGAGCTCGTTTGCTATTCC 57.682 50.000 7.83 0.00 44.17 3.01
445 447 3.124560 GGTAGGAGCTCGTTTGCTATTC 58.875 50.000 15.09 0.43 44.17 1.75
455 457 1.202313 GCAACTACAGGTAGGAGCTCG 60.202 57.143 7.83 0.00 37.49 5.03
499 501 4.330944 ACCACGTAGTCACAGAAATCAA 57.669 40.909 0.00 0.00 41.61 2.57
637 639 2.024414 ACAAGCGCAAAAGGAAGAACT 58.976 42.857 11.47 0.00 0.00 3.01
647 649 3.502191 ACAAGAAGAAACAAGCGCAAA 57.498 38.095 11.47 0.00 0.00 3.68
694 696 6.845908 AGTCCAACCATATGATCTAGCATTT 58.154 36.000 3.65 0.00 0.00 2.32
759 761 2.632996 TGAATAACTAGAGATGCGGGGG 59.367 50.000 0.00 0.00 0.00 5.40
762 764 5.632764 CACATCTGAATAACTAGAGATGCGG 59.367 44.000 13.89 3.76 43.77 5.69
816 818 3.970610 CGCATTCTATTCCAAATCTTGCG 59.029 43.478 0.00 0.00 43.33 4.85
897 899 8.400947 TCAGAGAAATATGTTGAATGCTAAAGC 58.599 33.333 0.00 0.00 42.50 3.51
913 915 9.539825 GCTGAGAAGATAAATGTCAGAGAAATA 57.460 33.333 5.03 0.00 39.78 1.40
919 921 5.583854 GCAAGCTGAGAAGATAAATGTCAGA 59.416 40.000 5.03 0.00 39.78 3.27
944 946 0.399949 ATGGAGAGCGGGGGACATTA 60.400 55.000 0.00 0.00 0.00 1.90
945 947 1.694169 ATGGAGAGCGGGGGACATT 60.694 57.895 0.00 0.00 0.00 2.71
1155 1161 1.956477 AGGCAATGTGTGTGAGAAACC 59.044 47.619 0.00 0.00 0.00 3.27
1188 1197 6.289834 CAGCCTTGACAGAATCTATCATCTT 58.710 40.000 0.00 0.00 0.00 2.40
1224 1233 1.041447 GCCTCCCTACGCTGGAACTA 61.041 60.000 0.00 0.00 0.00 2.24
1259 1272 3.201708 CCTTCTCCCTCATGGAATCAACT 59.798 47.826 0.00 0.00 44.57 3.16
1308 1321 2.800250 CTCTTTCTCCCTTGTTGCCAT 58.200 47.619 0.00 0.00 0.00 4.40
1313 1326 2.439507 TGTCAGCTCTTTCTCCCTTGTT 59.560 45.455 0.00 0.00 0.00 2.83
1358 1371 0.780002 CTGCATGCTTTTTCACGTGC 59.220 50.000 20.33 0.00 46.64 5.34
1390 1403 1.264749 TGGGATCTCCACTGGGAACG 61.265 60.000 0.00 0.00 44.38 3.95
1391 1404 2.696864 TGGGATCTCCACTGGGAAC 58.303 57.895 0.00 0.00 44.38 3.62
1424 1437 0.534203 AATCACCTGTTGCCGACGTT 60.534 50.000 0.00 0.00 0.00 3.99
1425 1438 0.949105 GAATCACCTGTTGCCGACGT 60.949 55.000 0.00 0.00 0.00 4.34
1463 1476 8.782339 TCATACTATGGAAGTGCATATTCATG 57.218 34.615 14.37 9.25 39.39 3.07
1506 1519 5.415701 ACGAAATGAGGCACACATAGAAAAT 59.584 36.000 0.00 0.00 39.06 1.82
1793 1806 3.011818 TCAGCAGGTGCACTAATGAATG 58.988 45.455 17.98 14.25 45.16 2.67
1797 1810 3.192001 ACAAATCAGCAGGTGCACTAATG 59.808 43.478 17.98 14.03 45.16 1.90
1801 1814 1.696063 AACAAATCAGCAGGTGCACT 58.304 45.000 17.98 0.00 45.16 4.40
1802 1815 2.514205 AAACAAATCAGCAGGTGCAC 57.486 45.000 8.80 8.80 45.16 4.57
1843 1856 1.070105 GGGCGTCTTGTACCACACA 59.930 57.895 0.00 0.00 34.51 3.72
1860 1873 5.466058 GTCTTCTAGATCATCACTTGCATGG 59.534 44.000 4.44 0.00 0.00 3.66
1891 1904 3.286353 TGCCCTTGCGATCAATAATCAA 58.714 40.909 0.00 0.00 41.78 2.57
1950 1963 3.896648 AACAAGTAATGCAAGACCGTG 57.103 42.857 0.00 0.00 0.00 4.94
1960 1973 8.773645 TGTGATGAGTGAAGTAAACAAGTAATG 58.226 33.333 0.00 0.00 0.00 1.90
2038 2051 2.724839 GCTCGTGCATGGTTTTCTAACG 60.725 50.000 5.98 0.00 39.41 3.18
2041 2054 2.346803 GAGCTCGTGCATGGTTTTCTA 58.653 47.619 12.58 0.00 42.74 2.10
2098 2111 0.033504 GTGTCAACAAGAGGAGCCGA 59.966 55.000 0.00 0.00 0.00 5.54
2109 2122 3.847457 CGTACATAATCGACGTGTCAACA 59.153 43.478 0.00 0.00 0.00 3.33
2118 2131 3.358115 CAGTCATCGCGTACATAATCGAC 59.642 47.826 5.77 2.37 33.59 4.20
2129 2142 1.738099 GCACCTTCAGTCATCGCGT 60.738 57.895 5.77 0.00 0.00 6.01
2133 2146 1.089920 AATGCGCACCTTCAGTCATC 58.910 50.000 14.90 0.00 0.00 2.92
2163 2176 9.688592 AAATTAGCAAGCAAGATATAGATTTGC 57.311 29.630 9.43 9.43 45.64 3.68
2218 2231 9.545105 AGCATCTTTGTTCAAATGAAACAATTA 57.455 25.926 0.00 0.00 35.58 1.40
2254 2267 3.560025 CCTTCCACTCCAATAGCAAGTGT 60.560 47.826 0.00 0.00 38.97 3.55
2264 2277 1.902508 CTGTAGCTCCTTCCACTCCAA 59.097 52.381 0.00 0.00 0.00 3.53
2287 2300 1.398390 GGACGATCTTGCATGAACACC 59.602 52.381 6.36 6.81 0.00 4.16
2311 2324 7.607991 CCTCTTGTTTCTAATTGGAGTGTACAT 59.392 37.037 0.00 0.00 0.00 2.29
2340 2353 3.378911 TCATGCACGTTAGACACAGAA 57.621 42.857 0.00 0.00 0.00 3.02
2342 2355 3.665323 GCTTTCATGCACGTTAGACACAG 60.665 47.826 0.00 0.00 0.00 3.66
2350 2363 0.537143 TCTGGGCTTTCATGCACGTT 60.537 50.000 0.00 0.00 39.64 3.99
2353 2366 2.295349 CCATATCTGGGCTTTCATGCAC 59.705 50.000 0.00 0.00 39.04 4.57
2368 2381 2.502295 CAAAGGAGCAGGAGCCATATC 58.498 52.381 0.00 0.00 43.56 1.63
2371 2384 1.305623 CCAAAGGAGCAGGAGCCAT 59.694 57.895 0.00 0.00 43.56 4.40
2377 2390 3.288092 GGTAATTACCCAAAGGAGCAGG 58.712 50.000 22.15 0.00 40.53 4.85
2419 2432 7.231317 TCAGAGAGGCATAAAAATTGTTTCAGT 59.769 33.333 0.00 0.00 0.00 3.41
2422 2435 8.031277 ACATCAGAGAGGCATAAAAATTGTTTC 58.969 33.333 0.00 0.00 0.00 2.78
2461 2474 1.814394 TGGATGAATGACTGCTGCAAC 59.186 47.619 3.02 1.55 0.00 4.17
2484 2497 0.392461 GGTCCGGCACAAGATAAGCA 60.392 55.000 0.00 0.00 0.00 3.91
2489 2502 1.918293 TCAGGGTCCGGCACAAGAT 60.918 57.895 0.00 0.00 0.00 2.40
2530 2543 3.512033 CTGGACTTGTACCAGCTCTAC 57.488 52.381 0.00 0.00 46.30 2.59
2546 2559 4.556697 ACATATGTGATCAGGGTACTGGA 58.443 43.478 7.78 0.00 44.99 3.86
2547 2560 4.963318 ACATATGTGATCAGGGTACTGG 57.037 45.455 7.78 0.00 44.99 4.00
2585 2598 2.621998 GAGCAAGATAGCAACATGGCAT 59.378 45.455 0.00 0.00 36.85 4.40
2588 2601 3.538591 TCAGAGCAAGATAGCAACATGG 58.461 45.455 0.00 0.00 36.85 3.66
2598 2611 2.092538 CCCAAGTCCATCAGAGCAAGAT 60.093 50.000 0.00 0.00 0.00 2.40
2599 2612 1.280133 CCCAAGTCCATCAGAGCAAGA 59.720 52.381 0.00 0.00 0.00 3.02
2687 2700 4.252878 CCTGCAATGTAATTCCCAAAACC 58.747 43.478 0.00 0.00 31.22 3.27
2700 2713 2.114616 TCAAACCAAACCCTGCAATGT 58.885 42.857 0.00 0.00 0.00 2.71
2767 2780 6.542821 TCTCTCCATTCAAACTGTATTGGTT 58.457 36.000 0.00 0.00 0.00 3.67
2859 2872 1.965414 TCCATAGAGGAAGGCCAACA 58.035 50.000 5.01 0.00 45.65 3.33
2874 2887 0.693049 GCGATACAATCCCCCTCCAT 59.307 55.000 0.00 0.00 0.00 3.41
2954 2967 9.661187 CATGATCAAAAAGTTAGATGAGTATGC 57.339 33.333 0.00 0.00 0.00 3.14
2997 3010 0.403271 ATTCTCAAGGTGCAGCTGGT 59.597 50.000 20.97 0.77 0.00 4.00
3095 3108 4.384208 GCAGATAACCACACTTACCATCCT 60.384 45.833 0.00 0.00 0.00 3.24
3162 3175 6.449698 AGGCACAAACAATTAGATTCAACAG 58.550 36.000 0.00 0.00 0.00 3.16
3239 3253 4.569943 AGCTTCATGTCAAAGACGTACAT 58.430 39.130 0.00 0.00 34.95 2.29
3241 3255 3.987868 TGAGCTTCATGTCAAAGACGTAC 59.012 43.478 0.00 0.00 34.95 3.67
3414 3428 3.769739 TCTTGTTGTACCTCACATGCT 57.230 42.857 0.00 0.00 36.90 3.79
3450 3464 0.179073 CTGGAGACATTACCTGCCGG 60.179 60.000 0.00 0.00 41.51 6.13
3491 3505 8.902540 TTAAACACTGACAATGATCTGTTACT 57.097 30.769 0.00 0.00 0.00 2.24
3492 3506 9.546909 CATTAAACACTGACAATGATCTGTTAC 57.453 33.333 0.00 0.00 31.44 2.50
3501 3515 7.878477 AGAAATGCATTAAACACTGACAATG 57.122 32.000 13.39 0.00 0.00 2.82
3502 3516 7.927629 ACAAGAAATGCATTAAACACTGACAAT 59.072 29.630 13.39 0.00 0.00 2.71
3527 3541 3.188667 CAGACTCCCCGCTAAAAGAAAAC 59.811 47.826 0.00 0.00 0.00 2.43
3605 3619 1.228124 GCCTTGTACCTGTGGCACA 60.228 57.895 20.76 20.76 44.34 4.57
3692 3706 3.319755 CAACCTAATGCAAGCCAACAAG 58.680 45.455 0.00 0.00 0.00 3.16
3698 3712 1.474077 CAGACCAACCTAATGCAAGCC 59.526 52.381 0.00 0.00 0.00 4.35
3756 3770 1.895131 GAGCAGAATTTCCTTTGGCCA 59.105 47.619 0.00 0.00 0.00 5.36
3783 3797 3.245016 TGTCACTTGCTCCATGATTCCTT 60.245 43.478 0.00 0.00 0.00 3.36
3920 3934 3.058914 CGTCCTGGAAATCACACTTCAAC 60.059 47.826 0.00 0.00 0.00 3.18
3931 3945 1.423921 ACCCAAGTTCGTCCTGGAAAT 59.576 47.619 0.00 0.00 0.00 2.17
3934 3948 0.107831 CAACCCAAGTTCGTCCTGGA 59.892 55.000 0.00 0.00 32.45 3.86
3936 3950 0.535102 AGCAACCCAAGTTCGTCCTG 60.535 55.000 0.00 0.00 32.45 3.86
3939 3953 3.974871 TTAAAGCAACCCAAGTTCGTC 57.025 42.857 0.00 0.00 32.45 4.20
4013 4027 2.219080 TGCATGGCTTGATTCCTTCA 57.781 45.000 4.32 0.00 0.00 3.02
4058 4072 1.710013 AGGAAGACGTTGTACATGCG 58.290 50.000 15.72 15.72 0.00 4.73
4104 4118 1.871039 ACTACACACGCATCCAACAAC 59.129 47.619 0.00 0.00 0.00 3.32
4108 4122 1.985334 CGTACTACACACGCATCCAA 58.015 50.000 0.00 0.00 31.94 3.53
4115 4129 1.545759 CATCTGGCGTACTACACACG 58.454 55.000 0.00 0.00 42.24 4.49
4116 4130 1.203994 ACCATCTGGCGTACTACACAC 59.796 52.381 0.00 0.00 39.32 3.82
4117 4131 1.552578 ACCATCTGGCGTACTACACA 58.447 50.000 0.00 0.00 39.32 3.72
4118 4132 4.049186 CAATACCATCTGGCGTACTACAC 58.951 47.826 0.00 0.00 39.32 2.90
4119 4133 3.955551 TCAATACCATCTGGCGTACTACA 59.044 43.478 0.00 0.00 39.32 2.74
4120 4134 4.296690 GTCAATACCATCTGGCGTACTAC 58.703 47.826 0.00 0.00 39.32 2.73
4121 4135 3.319972 GGTCAATACCATCTGGCGTACTA 59.680 47.826 0.00 0.00 45.98 1.82
4122 4136 2.102588 GGTCAATACCATCTGGCGTACT 59.897 50.000 0.00 0.00 45.98 2.73
4123 4137 2.480845 GGTCAATACCATCTGGCGTAC 58.519 52.381 0.00 0.00 45.98 3.67
4124 4138 2.902705 GGTCAATACCATCTGGCGTA 57.097 50.000 0.00 0.00 45.98 4.42
4125 4139 3.780624 GGTCAATACCATCTGGCGT 57.219 52.632 0.00 0.00 45.98 5.68
4134 4148 1.199097 CAACCAGCAACGGTCAATACC 59.801 52.381 0.00 0.00 38.76 2.73
4135 4149 2.147958 TCAACCAGCAACGGTCAATAC 58.852 47.619 0.00 0.00 38.76 1.89
4177 4214 1.680314 GGCTGGCAAGGAGGAAAGG 60.680 63.158 0.00 0.00 0.00 3.11
4203 4247 7.241042 AGAACAACTAGATGTGGCTAAACTA 57.759 36.000 6.39 0.00 32.81 2.24
4232 4276 1.055040 CTAGAGGAGGCCATTGGAGG 58.945 60.000 5.01 0.00 0.00 4.30
4272 4316 6.324254 ACCTTGAACTCTACTAGCGGAATAAT 59.676 38.462 0.00 0.00 0.00 1.28
4293 4337 0.036952 CGATCTCACTGGTGCACCTT 60.037 55.000 34.75 20.10 36.82 3.50
4345 4389 1.557371 TCAAACGGGTCATATGGCTCA 59.443 47.619 8.16 0.00 0.00 4.26
4421 4465 3.261818 ACAACTTCTGTACCTCCTCCT 57.738 47.619 0.00 0.00 36.10 3.69
4451 4495 6.872547 AGAAACTTTTAGAGCTTACTTACCCG 59.127 38.462 0.00 0.00 0.00 5.28
4471 4515 9.696917 AAATCCAAATGTGTAATTCAGAGAAAC 57.303 29.630 0.00 0.00 0.00 2.78
4472 4516 9.912634 GAAATCCAAATGTGTAATTCAGAGAAA 57.087 29.630 0.00 0.00 0.00 2.52
4484 4528 8.650490 ACTAATGAAAAGGAAATCCAAATGTGT 58.350 29.630 1.67 0.00 38.89 3.72
4508 4552 5.576447 ACCAATTTTTCTTGAACACGACT 57.424 34.783 0.00 0.00 0.00 4.18
4519 4563 8.862325 AAAAGGAAACAAGAACCAATTTTTCT 57.138 26.923 0.00 0.00 34.66 2.52
4704 4748 3.426568 GAGTCAGCTGCGGGTTGC 61.427 66.667 9.47 0.00 46.70 4.17
4709 4753 4.406173 ACGACGAGTCAGCTGCGG 62.406 66.667 9.47 4.96 0.00 5.69
4783 4829 0.690192 TGAACCTCTGATCCGGCAAA 59.310 50.000 0.00 0.00 0.00 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.