Multiple sequence alignment - TraesCS1A01G215600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G215600 chr1A 100.000 5027 0 0 1 5027 381278435 381273409 0.000000e+00 9284.0
1 TraesCS1A01G215600 chr1A 88.080 646 63 10 3 642 486814520 486815157 0.000000e+00 754.0
2 TraesCS1A01G215600 chr1B 94.406 2860 98 17 1684 4510 411439907 411437077 0.000000e+00 4338.0
3 TraesCS1A01G215600 chr1B 92.610 1042 53 11 649 1687 411441058 411440038 0.000000e+00 1476.0
4 TraesCS1A01G215600 chr1D 92.210 1412 69 11 1684 3086 304336730 304335351 0.000000e+00 1960.0
5 TraesCS1A01G215600 chr1D 91.429 1365 68 17 3172 4489 304335361 304333999 0.000000e+00 1827.0
6 TraesCS1A01G215600 chr1D 94.508 1056 48 3 631 1686 304337915 304336870 0.000000e+00 1620.0
7 TraesCS1A01G215600 chr1D 89.302 645 61 6 3 641 348996702 348996060 0.000000e+00 802.0
8 TraesCS1A01G215600 chr1D 88.545 646 47 10 3 639 249021914 249022541 0.000000e+00 758.0
9 TraesCS1A01G215600 chr6A 90.343 642 59 3 4 642 579990178 579989537 0.000000e+00 839.0
10 TraesCS1A01G215600 chr7A 89.655 638 62 4 3 637 607549069 607549705 0.000000e+00 809.0
11 TraesCS1A01G215600 chr3D 89.457 645 62 5 3 642 18867056 18866413 0.000000e+00 809.0
12 TraesCS1A01G215600 chr3A 88.973 662 50 10 3 642 652826413 652825753 0.000000e+00 797.0
13 TraesCS1A01G215600 chr3A 86.271 641 61 18 3 639 713948821 713949438 0.000000e+00 671.0
14 TraesCS1A01G215600 chr3A 92.742 124 7 2 4632 4754 608485251 608485373 1.440000e-40 178.0
15 TraesCS1A01G215600 chr3A 91.509 106 6 1 4555 4660 307157 307259 5.250000e-30 143.0
16 TraesCS1A01G215600 chr2D 88.629 642 52 14 1 639 406144036 406143413 0.000000e+00 761.0
17 TraesCS1A01G215600 chr2A 84.863 621 77 6 3 606 773391983 773391363 1.200000e-170 610.0
18 TraesCS1A01G215600 chr6D 88.100 479 45 10 4555 5027 373278513 373278041 4.400000e-155 558.0
19 TraesCS1A01G215600 chr5D 87.730 489 36 10 4556 5027 48032625 48033106 2.650000e-152 549.0
20 TraesCS1A01G215600 chr6B 86.234 385 36 8 4555 4925 620862513 620862894 7.840000e-108 401.0
21 TraesCS1A01G215600 chr5B 86.436 376 35 11 4555 4916 685425003 685424630 1.010000e-106 398.0
22 TraesCS1A01G215600 chr5B 88.699 292 25 6 4555 4844 28744105 28743820 2.880000e-92 350.0
23 TraesCS1A01G215600 chr5B 89.565 115 6 1 4919 5027 28743809 28743695 1.890000e-29 141.0
24 TraesCS1A01G215600 chr3B 86.875 320 29 6 4555 4869 154159660 154159971 3.730000e-91 346.0
25 TraesCS1A01G215600 chr3B 92.308 91 7 0 4937 5027 154160193 154160283 4.080000e-26 130.0
26 TraesCS1A01G215600 chr2B 89.595 173 13 3 4555 4726 43240984 43240816 1.100000e-51 215.0
27 TraesCS1A01G215600 chr4D 94.521 73 4 0 4955 5027 44415275 44415203 4.110000e-21 113.0
28 TraesCS1A01G215600 chr7D 87.500 72 7 2 4538 4609 364105518 364105587 1.160000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G215600 chr1A 381273409 381278435 5026 True 9284.000000 9284 100.000000 1 5027 1 chr1A.!!$R1 5026
1 TraesCS1A01G215600 chr1A 486814520 486815157 637 False 754.000000 754 88.080000 3 642 1 chr1A.!!$F1 639
2 TraesCS1A01G215600 chr1B 411437077 411441058 3981 True 2907.000000 4338 93.508000 649 4510 2 chr1B.!!$R1 3861
3 TraesCS1A01G215600 chr1D 304333999 304337915 3916 True 1802.333333 1960 92.715667 631 4489 3 chr1D.!!$R2 3858
4 TraesCS1A01G215600 chr1D 348996060 348996702 642 True 802.000000 802 89.302000 3 641 1 chr1D.!!$R1 638
5 TraesCS1A01G215600 chr1D 249021914 249022541 627 False 758.000000 758 88.545000 3 639 1 chr1D.!!$F1 636
6 TraesCS1A01G215600 chr6A 579989537 579990178 641 True 839.000000 839 90.343000 4 642 1 chr6A.!!$R1 638
7 TraesCS1A01G215600 chr7A 607549069 607549705 636 False 809.000000 809 89.655000 3 637 1 chr7A.!!$F1 634
8 TraesCS1A01G215600 chr3D 18866413 18867056 643 True 809.000000 809 89.457000 3 642 1 chr3D.!!$R1 639
9 TraesCS1A01G215600 chr3A 652825753 652826413 660 True 797.000000 797 88.973000 3 642 1 chr3A.!!$R1 639
10 TraesCS1A01G215600 chr3A 713948821 713949438 617 False 671.000000 671 86.271000 3 639 1 chr3A.!!$F3 636
11 TraesCS1A01G215600 chr2D 406143413 406144036 623 True 761.000000 761 88.629000 1 639 1 chr2D.!!$R1 638
12 TraesCS1A01G215600 chr2A 773391363 773391983 620 True 610.000000 610 84.863000 3 606 1 chr2A.!!$R1 603
13 TraesCS1A01G215600 chr3B 154159660 154160283 623 False 238.000000 346 89.591500 4555 5027 2 chr3B.!!$F1 472

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
642 707 0.385751 CGGCCGAAGATGCTCTAAGA 59.614 55.000 24.07 0.0 0.0 2.10 F
1506 1573 0.328548 AGTAGGGGGATTGGGGGAAG 60.329 60.000 0.00 0.0 0.0 3.46 F
2349 2560 1.066143 AGCTCGTCCAACCCACAATAG 60.066 52.381 0.00 0.0 0.0 1.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1652 1720 0.114168 ACCCAATTGCAGGCCAGTAA 59.886 50.0 5.01 2.34 0.0 2.24 R
3137 3356 2.350772 CCGTCTCCAAAAAGCACATCAC 60.351 50.0 0.00 0.00 0.0 3.06 R
4190 4431 2.537633 ATGGCAAATCCCTCACACAT 57.462 45.0 0.00 0.00 0.0 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 57 2.167219 CGGCGTTGATGTCGAGCAT 61.167 57.895 0.00 0.00 39.90 3.79
92 94 4.052229 CTCCGGACCAACGTCGCT 62.052 66.667 0.00 0.00 40.17 4.93
101 103 1.562691 CAACGTCGCTGCGAAGAAA 59.437 52.632 36.80 10.61 37.53 2.52
116 118 4.053295 CGAAGAAAAGAAACACCGACCTA 58.947 43.478 0.00 0.00 0.00 3.08
228 243 3.569049 CTTCCCTCGACAACGCCGT 62.569 63.158 0.00 0.00 39.58 5.68
333 378 4.379243 CTCCGACACCGCCAAGCT 62.379 66.667 0.00 0.00 0.00 3.74
442 497 2.352034 CGCCTGACTATATACGATCGCT 59.648 50.000 16.60 5.44 0.00 4.93
447 502 5.292671 TGACTATATACGATCGCTGAACC 57.707 43.478 16.60 0.00 0.00 3.62
487 547 1.670811 CTTGTGGCGTCTTTTGTGAGT 59.329 47.619 0.00 0.00 0.00 3.41
546 608 3.075005 GCCTGGGGCGTGACTAGA 61.075 66.667 0.00 0.00 39.62 2.43
549 611 1.517832 CTGGGGCGTGACTAGAAGG 59.482 63.158 0.00 0.00 0.00 3.46
560 622 2.092049 TGACTAGAAGGTAGATCGCCCA 60.092 50.000 0.00 0.00 0.00 5.36
564 626 1.112113 GAAGGTAGATCGCCCACAGA 58.888 55.000 6.49 0.00 0.00 3.41
578 640 1.977544 ACAGAGGCCGAACTAGCGT 60.978 57.895 0.00 0.00 0.00 5.07
642 707 0.385751 CGGCCGAAGATGCTCTAAGA 59.614 55.000 24.07 0.00 0.00 2.10
646 711 3.262420 GCCGAAGATGCTCTAAGAAACA 58.738 45.455 0.00 0.00 0.00 2.83
773 840 2.747446 GCAACCACATTACTCAATCCGT 59.253 45.455 0.00 0.00 0.00 4.69
813 880 1.446966 GGCAGGAGTCGAGACTTGC 60.447 63.158 17.12 17.12 42.66 4.01
1314 1381 2.583441 CCTCACCACCCGCTTCAGA 61.583 63.158 0.00 0.00 0.00 3.27
1353 1420 4.269183 TCATCATGCTCACCGGTAAAATT 58.731 39.130 6.87 0.00 0.00 1.82
1369 1436 6.183360 CGGTAAAATTCTCGTCTAAGGTGTTC 60.183 42.308 0.00 0.00 0.00 3.18
1428 1495 2.584608 CCACAGATCCCCGTGTCC 59.415 66.667 6.74 0.00 0.00 4.02
1436 1503 4.308458 CCCCGTGTCCGTGCTTCA 62.308 66.667 0.00 0.00 0.00 3.02
1454 1521 4.952262 TTCAGCATGTGAAGCTATTGTC 57.048 40.909 6.62 0.00 40.45 3.18
1506 1573 0.328548 AGTAGGGGGATTGGGGGAAG 60.329 60.000 0.00 0.00 0.00 3.46
1519 1586 1.367471 GGGAAGGCTTTGCGCTTTT 59.633 52.632 9.73 0.00 38.14 2.27
1598 1665 2.777692 TGTAGAGGAAATGGGGGATGAC 59.222 50.000 0.00 0.00 0.00 3.06
1635 1702 1.597663 CGTCATTGGTATCGAAAGGGC 59.402 52.381 0.00 0.00 0.00 5.19
1651 1719 6.998074 TCGAAAGGGCACATCAGAATATTATT 59.002 34.615 0.00 0.00 0.00 1.40
1652 1720 7.502226 TCGAAAGGGCACATCAGAATATTATTT 59.498 33.333 0.00 0.00 0.00 1.40
1663 1731 7.510549 TCAGAATATTATTTTACTGGCCTGC 57.489 36.000 9.95 0.00 0.00 4.85
1677 1745 1.899142 GGCCTGCAATTGGGTTAAGAA 59.101 47.619 7.72 0.00 0.00 2.52
1692 1902 7.338710 TGGGTTAAGAAGAATGATTGAGGTAG 58.661 38.462 0.00 0.00 0.00 3.18
1693 1903 7.037586 TGGGTTAAGAAGAATGATTGAGGTAGT 60.038 37.037 0.00 0.00 0.00 2.73
1694 1904 7.496263 GGGTTAAGAAGAATGATTGAGGTAGTC 59.504 40.741 0.00 0.00 0.00 2.59
1742 1952 3.126858 GCCGTCAATCATGAGCTTTGTTA 59.873 43.478 0.09 0.00 35.88 2.41
1794 2005 8.092521 ACAGGAATCTTATCTAATGAAATGCG 57.907 34.615 0.00 0.00 0.00 4.73
1877 2088 6.765915 ATTAGTCAGAGAAAAGGAAATGCC 57.234 37.500 0.00 0.00 0.00 4.40
2090 2301 5.704978 TGTATGATGCTAGTTTTGCTTGTCA 59.295 36.000 0.00 0.00 0.00 3.58
2094 2305 6.845302 TGATGCTAGTTTTGCTTGTCATTAG 58.155 36.000 0.00 0.00 0.00 1.73
2107 2318 1.943340 GTCATTAGGCAAGCTGCTACC 59.057 52.381 0.90 8.14 44.28 3.18
2193 2404 5.703130 GGTGCAGAGACTTCAACTCTAATTT 59.297 40.000 0.00 0.00 41.94 1.82
2195 2406 7.255277 GGTGCAGAGACTTCAACTCTAATTTTT 60.255 37.037 0.00 0.00 41.94 1.94
2343 2554 2.817258 CAATTTTAGCTCGTCCAACCCA 59.183 45.455 0.00 0.00 0.00 4.51
2349 2560 1.066143 AGCTCGTCCAACCCACAATAG 60.066 52.381 0.00 0.00 0.00 1.73
2629 2840 1.608283 GCGCTTGTTAGACCACTTCCT 60.608 52.381 0.00 0.00 0.00 3.36
2731 2942 3.873952 GCAGGTTCCTATCTTGTCATGAC 59.126 47.826 19.27 19.27 0.00 3.06
2879 3091 8.825667 TTTGGCACTTGATTAAATTTTCTACC 57.174 30.769 0.00 0.00 0.00 3.18
2943 3155 5.355910 TCTTCGCCAACTTTTTCAGTAGTTT 59.644 36.000 0.00 0.00 32.94 2.66
2944 3156 6.539464 TCTTCGCCAACTTTTTCAGTAGTTTA 59.461 34.615 0.00 0.00 32.94 2.01
3004 3216 8.970691 AATCAAGTTGTTATGTGATTGTTAGC 57.029 30.769 2.11 0.00 38.84 3.09
3012 3224 7.711846 TGTTATGTGATTGTTAGCTGTTGTTT 58.288 30.769 0.00 0.00 0.00 2.83
3041 3259 7.336679 TGTCATATTTTTGTAGTCCCATGACAG 59.663 37.037 9.36 0.00 43.49 3.51
3046 3264 6.385649 TTTTGTAGTCCCATGACAGTTTTC 57.614 37.500 0.00 0.00 44.33 2.29
3158 3377 1.879380 TGATGTGCTTTTTGGAGACGG 59.121 47.619 0.00 0.00 0.00 4.79
3222 3441 0.745845 GGCTCCGTCAATGCAGTGAT 60.746 55.000 21.00 0.00 0.00 3.06
3245 3464 9.965902 TGATTAGTATAGATCTACAGAGCATCA 57.034 33.333 4.10 6.45 37.82 3.07
3659 3887 1.957113 GCTATTGAACAAGGCCAGGCT 60.957 52.381 12.43 0.00 0.00 4.58
3836 4064 1.779700 TGGGGTTGGCATATGCATCTA 59.220 47.619 28.07 9.29 44.36 1.98
4112 4353 4.651778 TGTACAGCTAGTTGAAATGGCTT 58.348 39.130 14.09 0.00 0.00 4.35
4190 4431 1.347062 GCCCCCTTTGAATTGTTCCA 58.653 50.000 0.00 0.00 0.00 3.53
4204 4445 3.524095 TGTTCCATGTGTGAGGGATTT 57.476 42.857 0.00 0.00 33.48 2.17
4302 4548 8.576442 ACAGTTCATTCTTATCCGTTCATTTTT 58.424 29.630 0.00 0.00 0.00 1.94
4402 4685 1.838077 ACCTAGCTAATTTGGCCGACT 59.162 47.619 0.00 0.00 0.00 4.18
4414 4697 4.436998 CCGACTGTCAGCCCGACC 62.437 72.222 14.53 0.00 44.71 4.79
4443 4727 0.603569 CACTGCTGGGAGTACGTTCT 59.396 55.000 0.00 0.00 0.00 3.01
4468 4752 6.219302 CAATCTTGGAATTTGAAACAGTGC 57.781 37.500 0.00 0.00 0.00 4.40
4479 4763 0.820891 AAACAGTGCTGCTCCCTGTG 60.821 55.000 16.68 4.59 39.29 3.66
4481 4765 1.228063 CAGTGCTGCTCCCTGTGTT 60.228 57.895 0.00 0.00 0.00 3.32
4507 4793 5.248870 ACACAAGGTTTCACTGATTTCAC 57.751 39.130 0.00 0.00 0.00 3.18
4510 4796 4.201910 ACAAGGTTTCACTGATTTCACGTG 60.202 41.667 9.94 9.94 0.00 4.49
4511 4797 2.290641 AGGTTTCACTGATTTCACGTGC 59.709 45.455 11.67 0.00 0.00 5.34
4512 4798 2.290641 GGTTTCACTGATTTCACGTGCT 59.709 45.455 11.67 0.00 0.00 4.40
4513 4799 3.291585 GTTTCACTGATTTCACGTGCTG 58.708 45.455 11.67 3.46 0.00 4.41
4514 4800 1.511850 TCACTGATTTCACGTGCTGG 58.488 50.000 11.67 0.19 0.00 4.85
4515 4801 1.069978 TCACTGATTTCACGTGCTGGA 59.930 47.619 11.67 0.00 0.00 3.86
4516 4802 1.462283 CACTGATTTCACGTGCTGGAG 59.538 52.381 11.67 5.34 0.00 3.86
4517 4803 1.070758 ACTGATTTCACGTGCTGGAGT 59.929 47.619 11.67 5.99 0.00 3.85
4518 4804 2.299013 ACTGATTTCACGTGCTGGAGTA 59.701 45.455 11.67 0.00 0.00 2.59
4519 4805 3.055819 ACTGATTTCACGTGCTGGAGTAT 60.056 43.478 11.67 0.00 0.00 2.12
4520 4806 3.521560 TGATTTCACGTGCTGGAGTATC 58.478 45.455 11.67 6.12 0.00 2.24
4521 4807 1.990799 TTTCACGTGCTGGAGTATCG 58.009 50.000 11.67 0.00 34.37 2.92
4522 4808 1.170442 TTCACGTGCTGGAGTATCGA 58.830 50.000 11.67 0.00 34.37 3.59
4523 4809 0.450583 TCACGTGCTGGAGTATCGAC 59.549 55.000 11.67 0.00 34.37 4.20
4524 4810 0.170339 CACGTGCTGGAGTATCGACA 59.830 55.000 0.82 0.00 34.37 4.35
4525 4811 0.885879 ACGTGCTGGAGTATCGACAA 59.114 50.000 0.00 0.00 34.37 3.18
4526 4812 1.269166 CGTGCTGGAGTATCGACAAC 58.731 55.000 0.00 0.00 34.37 3.32
4527 4813 1.641577 GTGCTGGAGTATCGACAACC 58.358 55.000 0.00 0.00 34.37 3.77
4528 4814 0.172578 TGCTGGAGTATCGACAACCG 59.827 55.000 0.00 0.00 40.25 4.44
4529 4815 0.527817 GCTGGAGTATCGACAACCGG 60.528 60.000 0.00 0.00 39.14 5.28
4530 4816 1.100510 CTGGAGTATCGACAACCGGA 58.899 55.000 9.46 0.00 39.14 5.14
4531 4817 0.813184 TGGAGTATCGACAACCGGAC 59.187 55.000 9.46 0.00 39.14 4.79
4532 4818 0.101939 GGAGTATCGACAACCGGACC 59.898 60.000 9.46 0.00 39.14 4.46
4533 4819 1.101331 GAGTATCGACAACCGGACCT 58.899 55.000 9.46 0.00 39.14 3.85
4534 4820 1.065251 GAGTATCGACAACCGGACCTC 59.935 57.143 9.46 0.00 39.14 3.85
4535 4821 0.248377 GTATCGACAACCGGACCTCG 60.248 60.000 9.46 10.85 39.14 4.63
4536 4822 0.392863 TATCGACAACCGGACCTCGA 60.393 55.000 9.46 16.19 42.43 4.04
4537 4823 1.246056 ATCGACAACCGGACCTCGAA 61.246 55.000 20.32 8.98 42.43 3.71
4538 4824 1.731969 CGACAACCGGACCTCGAAC 60.732 63.158 9.46 0.00 42.43 3.95
4539 4825 1.373873 GACAACCGGACCTCGAACC 60.374 63.158 9.46 0.00 42.43 3.62
4540 4826 2.047560 CAACCGGACCTCGAACCC 60.048 66.667 9.46 0.00 42.43 4.11
4541 4827 2.203743 AACCGGACCTCGAACCCT 60.204 61.111 9.46 0.00 42.43 4.34
4542 4828 1.840198 AACCGGACCTCGAACCCTT 60.840 57.895 9.46 0.00 42.43 3.95
4543 4829 1.824224 AACCGGACCTCGAACCCTTC 61.824 60.000 9.46 0.00 42.43 3.46
4544 4830 2.577593 CGGACCTCGAACCCTTCC 59.422 66.667 0.00 0.00 42.43 3.46
4545 4831 1.982938 CGGACCTCGAACCCTTCCT 60.983 63.158 0.00 0.00 42.43 3.36
4546 4832 0.682209 CGGACCTCGAACCCTTCCTA 60.682 60.000 0.00 0.00 42.43 2.94
4547 4833 1.565067 GGACCTCGAACCCTTCCTAA 58.435 55.000 0.00 0.00 0.00 2.69
4548 4834 1.904537 GGACCTCGAACCCTTCCTAAA 59.095 52.381 0.00 0.00 0.00 1.85
4549 4835 2.504585 GGACCTCGAACCCTTCCTAAAT 59.495 50.000 0.00 0.00 0.00 1.40
4550 4836 3.532542 GACCTCGAACCCTTCCTAAATG 58.467 50.000 0.00 0.00 0.00 2.32
4551 4837 2.289565 CCTCGAACCCTTCCTAAATGC 58.710 52.381 0.00 0.00 0.00 3.56
4552 4838 2.289565 CTCGAACCCTTCCTAAATGCC 58.710 52.381 0.00 0.00 0.00 4.40
4553 4839 1.631388 TCGAACCCTTCCTAAATGCCA 59.369 47.619 0.00 0.00 0.00 4.92
4563 4849 0.890996 CTAAATGCCAGGGCGGATCC 60.891 60.000 0.00 0.00 45.51 3.36
4565 4851 2.916527 AAATGCCAGGGCGGATCCAG 62.917 60.000 13.41 5.88 45.51 3.86
4582 4868 2.278404 GCATGGGGCATGGGTGTA 59.722 61.111 0.00 0.00 41.64 2.90
4583 4869 2.127232 GCATGGGGCATGGGTGTAC 61.127 63.158 0.00 0.00 41.64 2.90
4584 4870 1.305959 CATGGGGCATGGGTGTACA 59.694 57.895 0.00 0.00 38.11 2.90
4585 4871 0.752743 CATGGGGCATGGGTGTACAG 60.753 60.000 0.00 0.00 38.11 2.74
4606 4892 6.748132 ACAGATGTACACCCAAAAATTTCTG 58.252 36.000 12.10 12.10 34.51 3.02
4690 4976 1.467920 ATTTCAGCAAGCAGGTAGGC 58.532 50.000 0.00 0.00 0.00 3.93
4695 4981 2.404995 GCAAGCAGGTAGGCAGCAG 61.405 63.158 0.00 0.00 37.14 4.24
4696 4982 2.045536 AAGCAGGTAGGCAGCAGC 60.046 61.111 0.00 0.00 41.10 5.25
4726 5012 1.802508 GCTTTGTTCGCTTGCACCTTT 60.803 47.619 0.00 0.00 0.00 3.11
4750 5036 4.965119 GTCTTGGACCATTTATGTCCAC 57.035 45.455 11.44 0.00 45.73 4.02
4754 5040 4.150897 TGGACCATTTATGTCCACTAGC 57.849 45.455 8.00 0.00 41.78 3.42
4757 5043 2.093181 ACCATTTATGTCCACTAGCGCA 60.093 45.455 11.47 0.00 0.00 6.09
4759 5045 1.635844 TTTATGTCCACTAGCGCACG 58.364 50.000 11.47 1.43 0.00 5.34
4778 5066 1.301244 CACGCACAAGAGGCTCACT 60.301 57.895 18.26 0.00 0.00 3.41
4800 5088 1.347707 AGCCGAGTGATTCTTGTCCAA 59.652 47.619 0.00 0.00 0.00 3.53
4877 5175 0.321564 TTCCCACAGAGGCATGAACG 60.322 55.000 0.00 0.00 35.39 3.95
4882 5180 2.169789 CAGAGGCATGAACGAGGCG 61.170 63.158 0.00 0.00 35.18 5.52
4899 5197 4.266070 GGCGGCGCTCTCACGATA 62.266 66.667 32.30 0.00 34.06 2.92
4900 5198 2.727647 GCGGCGCTCTCACGATAG 60.728 66.667 26.86 0.00 46.19 2.08
4913 5211 3.955291 CGATAGTGGCAGAGACAGG 57.045 57.895 0.00 0.00 0.00 4.00
4914 5212 0.387202 CGATAGTGGCAGAGACAGGG 59.613 60.000 0.00 0.00 0.00 4.45
4915 5213 0.755686 GATAGTGGCAGAGACAGGGG 59.244 60.000 0.00 0.00 0.00 4.79
4916 5214 0.339859 ATAGTGGCAGAGACAGGGGA 59.660 55.000 0.00 0.00 0.00 4.81
4917 5215 0.116342 TAGTGGCAGAGACAGGGGAA 59.884 55.000 0.00 0.00 0.00 3.97
4918 5216 0.548682 AGTGGCAGAGACAGGGGAAT 60.549 55.000 0.00 0.00 0.00 3.01
4919 5217 1.204146 GTGGCAGAGACAGGGGAATA 58.796 55.000 0.00 0.00 0.00 1.75
4920 5218 1.139853 GTGGCAGAGACAGGGGAATAG 59.860 57.143 0.00 0.00 0.00 1.73
4921 5219 0.107643 GGCAGAGACAGGGGAATAGC 59.892 60.000 0.00 0.00 0.00 2.97
4922 5220 0.833287 GCAGAGACAGGGGAATAGCA 59.167 55.000 0.00 0.00 0.00 3.49
4923 5221 1.210478 GCAGAGACAGGGGAATAGCAA 59.790 52.381 0.00 0.00 0.00 3.91
4924 5222 2.744494 GCAGAGACAGGGGAATAGCAAG 60.744 54.545 0.00 0.00 0.00 4.01
4925 5223 2.122768 AGAGACAGGGGAATAGCAAGG 58.877 52.381 0.00 0.00 0.00 3.61
4926 5224 1.141858 GAGACAGGGGAATAGCAAGGG 59.858 57.143 0.00 0.00 0.00 3.95
4927 5225 0.466372 GACAGGGGAATAGCAAGGGC 60.466 60.000 0.00 0.00 41.61 5.19
4928 5226 1.152673 CAGGGGAATAGCAAGGGCC 60.153 63.158 0.00 0.00 42.56 5.80
4929 5227 2.198703 GGGGAATAGCAAGGGCCC 59.801 66.667 16.46 16.46 42.56 5.80
4930 5228 2.395353 GGGGAATAGCAAGGGCCCT 61.395 63.158 22.28 22.28 42.56 5.19
4931 5229 1.152673 GGGAATAGCAAGGGCCCTG 60.153 63.158 29.50 20.63 42.56 4.45
4932 5230 1.829970 GGAATAGCAAGGGCCCTGC 60.830 63.158 29.50 29.05 42.56 4.85
4979 5423 7.664318 TGCTGCTAATTTGATATGATCAGTGAT 59.336 33.333 4.98 4.98 40.94 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 57 4.415332 GGTCGAGCTTGACGGCGA 62.415 66.667 24.65 8.37 39.83 5.54
92 94 2.031191 GTCGGTGTTTCTTTTCTTCGCA 59.969 45.455 0.00 0.00 0.00 5.10
101 103 3.400255 GAAAGCTAGGTCGGTGTTTCTT 58.600 45.455 0.00 0.00 0.00 2.52
302 347 2.185350 GGAGCTGCTTCTGCGCTA 59.815 61.111 9.73 0.00 44.35 4.26
434 489 1.443872 GTCACGGTTCAGCGATCGT 60.444 57.895 17.81 0.26 36.19 3.73
442 497 0.865111 CAATCGCAAGTCACGGTTCA 59.135 50.000 0.00 0.00 29.84 3.18
447 502 2.096406 CGGCAATCGCAAGTCACG 59.904 61.111 0.00 0.00 41.24 4.35
487 547 2.421751 TTTGAACTTGGTCGTTCCCA 57.578 45.000 0.00 0.00 41.95 4.37
544 606 1.115467 CTGTGGGCGATCTACCTTCT 58.885 55.000 4.46 0.00 0.00 2.85
546 608 1.115467 CTCTGTGGGCGATCTACCTT 58.885 55.000 4.46 0.00 0.00 3.50
549 611 1.068250 GCCTCTGTGGGCGATCTAC 59.932 63.158 0.00 0.00 42.82 2.59
560 622 1.935327 GACGCTAGTTCGGCCTCTGT 61.935 60.000 0.00 0.00 0.00 3.41
564 626 3.823330 CCGACGCTAGTTCGGCCT 61.823 66.667 18.35 0.00 40.25 5.19
578 640 1.289066 CAGTCTGAAGGCGAACCGA 59.711 57.895 0.00 0.00 42.76 4.69
609 671 3.169198 GCCGTTCGGCTTTCAGAG 58.831 61.111 25.91 0.00 46.99 3.35
629 694 8.675504 CATTCTCAATGTTTCTTAGAGCATCTT 58.324 33.333 2.82 0.00 39.29 2.40
642 707 3.255642 CCGGTGAACCATTCTCAATGTTT 59.744 43.478 0.00 0.00 37.18 2.83
646 711 1.004745 AGCCGGTGAACCATTCTCAAT 59.995 47.619 1.90 0.00 35.14 2.57
1314 1381 0.686441 TGATGGAGTCGTCGGGGAAT 60.686 55.000 0.00 0.00 0.00 3.01
1369 1436 1.942657 CATGGTGATAACAGCGAAGGG 59.057 52.381 0.00 0.00 46.03 3.95
1436 1503 4.841422 AGAAGACAATAGCTTCACATGCT 58.159 39.130 0.00 0.00 43.19 3.79
1480 1547 2.158004 CCCAATCCCCCTACTCTATCCA 60.158 54.545 0.00 0.00 0.00 3.41
1519 1586 6.881065 GCTAACAGGCAGATATAATGAATCCA 59.119 38.462 0.00 0.00 0.00 3.41
1598 1665 4.335082 TGACGCAAATTACCATTTCTCG 57.665 40.909 0.00 0.00 34.19 4.04
1635 1702 9.071276 AGGCCAGTAAAATAATATTCTGATGTG 57.929 33.333 5.01 0.00 0.00 3.21
1651 1719 1.265236 CCCAATTGCAGGCCAGTAAA 58.735 50.000 5.01 0.00 0.00 2.01
1652 1720 0.114168 ACCCAATTGCAGGCCAGTAA 59.886 50.000 5.01 2.34 0.00 2.24
1663 1731 7.977853 CCTCAATCATTCTTCTTAACCCAATTG 59.022 37.037 0.00 0.00 0.00 2.32
1677 1745 6.986817 CCATAAACGACTACCTCAATCATTCT 59.013 38.462 0.00 0.00 0.00 2.40
1692 1902 4.094442 GGATCAAACCAGTCCATAAACGAC 59.906 45.833 0.00 0.00 32.23 4.34
1693 1903 4.258543 GGATCAAACCAGTCCATAAACGA 58.741 43.478 0.00 0.00 32.23 3.85
1694 1904 4.006989 TGGATCAAACCAGTCCATAAACG 58.993 43.478 0.00 0.00 37.12 3.60
1742 1952 9.933723 AACGATAAGTAACTAACAAGGTGTAAT 57.066 29.630 0.00 0.00 0.00 1.89
1779 1990 7.677454 ATGAGCATTCGCATTTCATTAGATA 57.323 32.000 0.00 0.00 42.27 1.98
1889 2100 3.907474 TCAGTTTGGACAGGATAGTTCCA 59.093 43.478 0.00 0.00 45.30 3.53
1929 2140 7.750229 AGAATAGATGCTTGACAAAAAGACA 57.250 32.000 0.00 0.00 0.00 3.41
1936 2147 6.016024 AGCACAAAAGAATAGATGCTTGACAA 60.016 34.615 0.00 0.00 40.39 3.18
2032 2243 3.617284 TGATCAACGGCTCAGTAGTAGA 58.383 45.455 0.00 0.00 0.00 2.59
2090 2301 0.541863 ACGGTAGCAGCTTGCCTAAT 59.458 50.000 0.00 0.00 46.52 1.73
2094 2305 2.876368 ATCCACGGTAGCAGCTTGCC 62.876 60.000 0.00 2.60 46.52 4.52
2503 2714 2.878406 TCCACTGTAGCTTCTTTGTTGC 59.122 45.455 0.00 0.00 0.00 4.17
2629 2840 3.691118 GTGCATGAAGTTTAGCTCCATGA 59.309 43.478 0.00 0.00 37.41 3.07
2879 3091 6.434596 TGTGTTGTCTTTAAATGACATTCCG 58.565 36.000 16.20 0.00 42.95 4.30
2943 3155 8.768397 AGGGATGTAACATGTAAGAACAGATTA 58.232 33.333 0.00 0.00 39.49 1.75
2944 3156 7.633789 AGGGATGTAACATGTAAGAACAGATT 58.366 34.615 0.00 0.00 39.49 2.40
3012 3224 8.544622 TCATGGGACTACAAAAATATGACACTA 58.455 33.333 0.00 0.00 0.00 2.74
3041 3259 6.808829 TGCAATCCTGAATGATATGGAAAAC 58.191 36.000 0.00 0.00 31.87 2.43
3046 3264 3.824443 TGCTGCAATCCTGAATGATATGG 59.176 43.478 0.00 0.00 0.00 2.74
3137 3356 2.350772 CCGTCTCCAAAAAGCACATCAC 60.351 50.000 0.00 0.00 0.00 3.06
3263 3482 7.197017 ACTTTAGCTGAAGATACACTACATCG 58.803 38.462 23.75 0.00 0.00 3.84
4051 4289 5.919707 CGGACTCATGATAGAATCACAGAAG 59.080 44.000 0.00 0.00 43.01 2.85
4190 4431 2.537633 ATGGCAAATCCCTCACACAT 57.462 45.000 0.00 0.00 0.00 3.21
4204 4445 3.490439 TGAGTGACAGAAGAAATGGCA 57.510 42.857 0.00 0.00 31.73 4.92
4302 4548 8.299570 GCAATTATTCCAAGTTCAGAAAGAGAA 58.700 33.333 0.00 0.00 0.00 2.87
4304 4550 7.596494 TGCAATTATTCCAAGTTCAGAAAGAG 58.404 34.615 0.00 0.00 0.00 2.85
4308 4554 9.558396 AAAAATGCAATTATTCCAAGTTCAGAA 57.442 25.926 0.00 0.00 33.67 3.02
4310 4556 9.211485 AGAAAAATGCAATTATTCCAAGTTCAG 57.789 29.630 0.00 0.00 33.67 3.02
4366 4641 1.207791 AGGTTTCAGATCTGGCCGAT 58.792 50.000 22.42 9.42 34.25 4.18
4414 4697 3.118261 ACTCCCAGCAGTGGTATTACATG 60.118 47.826 0.00 0.00 43.23 3.21
4465 4749 1.604604 TAAAACACAGGGAGCAGCAC 58.395 50.000 0.00 0.00 0.00 4.40
4466 4750 1.953686 GTTAAAACACAGGGAGCAGCA 59.046 47.619 0.00 0.00 0.00 4.41
4479 4763 8.474006 AAATCAGTGAAACCTTGTGTTAAAAC 57.526 30.769 0.00 0.00 37.80 2.43
4481 4765 7.757624 GTGAAATCAGTGAAACCTTGTGTTAAA 59.242 33.333 0.00 0.00 37.80 1.52
4497 4783 1.070758 ACTCCAGCACGTGAAATCAGT 59.929 47.619 22.23 10.56 0.00 3.41
4507 4793 1.269166 GTTGTCGATACTCCAGCACG 58.731 55.000 0.00 0.00 0.00 5.34
4510 4796 0.527817 CCGGTTGTCGATACTCCAGC 60.528 60.000 0.00 0.00 42.43 4.85
4511 4797 1.100510 TCCGGTTGTCGATACTCCAG 58.899 55.000 0.00 0.00 42.43 3.86
4512 4798 0.813184 GTCCGGTTGTCGATACTCCA 59.187 55.000 0.00 0.00 42.43 3.86
4513 4799 0.101939 GGTCCGGTTGTCGATACTCC 59.898 60.000 0.00 0.00 42.43 3.85
4514 4800 1.065251 GAGGTCCGGTTGTCGATACTC 59.935 57.143 0.00 0.00 42.43 2.59
4515 4801 1.101331 GAGGTCCGGTTGTCGATACT 58.899 55.000 0.00 0.00 42.43 2.12
4516 4802 0.248377 CGAGGTCCGGTTGTCGATAC 60.248 60.000 14.29 0.00 42.43 2.24
4517 4803 0.392863 TCGAGGTCCGGTTGTCGATA 60.393 55.000 16.98 1.46 42.43 2.92
4518 4804 1.246056 TTCGAGGTCCGGTTGTCGAT 61.246 55.000 20.06 0.00 40.85 3.59
4519 4805 1.898094 TTCGAGGTCCGGTTGTCGA 60.898 57.895 16.98 16.98 42.43 4.20
4520 4806 1.731969 GTTCGAGGTCCGGTTGTCG 60.732 63.158 13.56 13.56 39.14 4.35
4521 4807 1.373873 GGTTCGAGGTCCGGTTGTC 60.374 63.158 0.00 0.00 39.14 3.18
4522 4808 2.739132 GGTTCGAGGTCCGGTTGT 59.261 61.111 0.00 0.00 39.14 3.32
4523 4809 2.047560 GGGTTCGAGGTCCGGTTG 60.048 66.667 0.00 0.00 39.14 3.77
4524 4810 1.824224 GAAGGGTTCGAGGTCCGGTT 61.824 60.000 0.00 0.00 39.14 4.44
4525 4811 2.203743 AAGGGTTCGAGGTCCGGT 60.204 61.111 0.00 0.00 39.14 5.28
4526 4812 2.577593 GAAGGGTTCGAGGTCCGG 59.422 66.667 0.00 0.00 39.14 5.14
4527 4813 0.682209 TAGGAAGGGTTCGAGGTCCG 60.682 60.000 0.00 0.00 40.25 4.79
4528 4814 1.565067 TTAGGAAGGGTTCGAGGTCC 58.435 55.000 0.00 0.00 0.00 4.46
4529 4815 3.532542 CATTTAGGAAGGGTTCGAGGTC 58.467 50.000 0.00 0.00 0.00 3.85
4530 4816 2.355818 GCATTTAGGAAGGGTTCGAGGT 60.356 50.000 0.00 0.00 0.00 3.85
4531 4817 2.289565 GCATTTAGGAAGGGTTCGAGG 58.710 52.381 0.00 0.00 0.00 4.63
4532 4818 2.289565 GGCATTTAGGAAGGGTTCGAG 58.710 52.381 0.00 0.00 0.00 4.04
4533 4819 1.631388 TGGCATTTAGGAAGGGTTCGA 59.369 47.619 0.00 0.00 0.00 3.71
4534 4820 2.017049 CTGGCATTTAGGAAGGGTTCG 58.983 52.381 0.00 0.00 0.00 3.95
4535 4821 2.379005 CCTGGCATTTAGGAAGGGTTC 58.621 52.381 0.00 0.00 37.52 3.62
4536 4822 1.007118 CCCTGGCATTTAGGAAGGGTT 59.993 52.381 0.00 0.00 42.36 4.11
4537 4823 0.631212 CCCTGGCATTTAGGAAGGGT 59.369 55.000 0.00 0.00 42.36 4.34
4538 4824 3.520623 CCCTGGCATTTAGGAAGGG 57.479 57.895 0.00 0.00 41.67 3.95
4539 4825 1.103398 CGCCCTGGCATTTAGGAAGG 61.103 60.000 9.17 0.00 42.06 3.46
4540 4826 1.103398 CCGCCCTGGCATTTAGGAAG 61.103 60.000 9.17 0.00 42.06 3.46
4541 4827 1.077068 CCGCCCTGGCATTTAGGAA 60.077 57.895 9.17 0.00 42.06 3.36
4542 4828 1.352622 ATCCGCCCTGGCATTTAGGA 61.353 55.000 9.17 6.59 42.06 2.94
4543 4829 0.890996 GATCCGCCCTGGCATTTAGG 60.891 60.000 9.17 0.76 42.06 2.69
4544 4830 0.890996 GGATCCGCCCTGGCATTTAG 60.891 60.000 9.17 0.00 42.06 1.85
4545 4831 1.150536 GGATCCGCCCTGGCATTTA 59.849 57.895 9.17 0.00 42.06 1.40
4546 4832 2.123726 GGATCCGCCCTGGCATTT 60.124 61.111 9.17 0.00 42.06 2.32
4547 4833 3.419580 TGGATCCGCCCTGGCATT 61.420 61.111 7.39 0.00 42.06 3.56
4548 4834 3.882326 CTGGATCCGCCCTGGCAT 61.882 66.667 7.39 0.00 42.06 4.40
4551 4837 3.882326 ATGCTGGATCCGCCCTGG 61.882 66.667 20.83 3.92 40.09 4.45
4552 4838 2.593725 CATGCTGGATCCGCCCTG 60.594 66.667 20.83 15.57 34.97 4.45
4553 4839 3.882326 CCATGCTGGATCCGCCCT 61.882 66.667 20.83 9.48 40.96 5.19
4563 4849 2.570774 TACACCCATGCCCCATGCTG 62.571 60.000 0.00 0.92 40.20 4.41
4565 4851 2.127232 GTACACCCATGCCCCATGC 61.127 63.158 0.00 0.00 40.20 4.06
4570 4856 0.255890 ACATCTGTACACCCATGCCC 59.744 55.000 0.00 0.00 0.00 5.36
4582 4868 6.738453 GCAGAAATTTTTGGGTGTACATCTGT 60.738 38.462 6.00 0.00 34.54 3.41
4583 4869 5.634859 GCAGAAATTTTTGGGTGTACATCTG 59.365 40.000 6.00 8.53 35.02 2.90
4584 4870 5.304101 TGCAGAAATTTTTGGGTGTACATCT 59.696 36.000 6.00 0.00 0.00 2.90
4585 4871 5.537188 TGCAGAAATTTTTGGGTGTACATC 58.463 37.500 10.43 0.00 0.00 3.06
4626 4912 9.526713 GAATAGTGTATCTGTCATATATGCCTG 57.473 37.037 7.92 1.03 0.00 4.85
4637 4923 5.279056 GGGCCTGTAGAATAGTGTATCTGTC 60.279 48.000 0.84 0.00 0.00 3.51
4703 4989 0.527385 GTGCAAGCGAACAAAGCCAA 60.527 50.000 0.00 0.00 34.64 4.52
4710 4996 1.234821 CCTAAAGGTGCAAGCGAACA 58.765 50.000 0.00 0.00 40.95 3.18
4740 5026 1.635844 CGTGCGCTAGTGGACATAAA 58.364 50.000 24.94 0.00 0.00 1.40
4754 5040 4.707840 CTCTTGTGCGTGCGTGCG 62.708 66.667 0.00 0.00 37.81 5.34
4757 5043 4.609018 AGCCTCTTGTGCGTGCGT 62.609 61.111 0.00 0.00 0.00 5.24
4759 5045 2.666190 TGAGCCTCTTGTGCGTGC 60.666 61.111 0.00 0.00 0.00 5.34
4778 5066 1.066858 GGACAAGAATCACTCGGCTGA 60.067 52.381 0.00 0.00 0.00 4.26
4787 5075 4.892345 TGTTTGGTGATTGGACAAGAATCA 59.108 37.500 0.00 0.00 37.46 2.57
4791 5079 5.867903 AATTGTTTGGTGATTGGACAAGA 57.132 34.783 0.00 0.00 34.17 3.02
4853 5143 1.280133 CATGCCTCTGTGGGAAGAAGA 59.720 52.381 0.00 0.00 40.40 2.87
4890 5188 2.017782 GTCTCTGCCACTATCGTGAGA 58.982 52.381 0.00 0.00 43.97 3.27
4891 5189 1.745653 TGTCTCTGCCACTATCGTGAG 59.254 52.381 0.00 0.00 43.97 3.51
4892 5190 1.745653 CTGTCTCTGCCACTATCGTGA 59.254 52.381 0.00 0.00 43.97 4.35
4893 5191 1.202348 CCTGTCTCTGCCACTATCGTG 60.202 57.143 0.00 0.00 40.89 4.35
4894 5192 1.107114 CCTGTCTCTGCCACTATCGT 58.893 55.000 0.00 0.00 0.00 3.73
4895 5193 0.387202 CCCTGTCTCTGCCACTATCG 59.613 60.000 0.00 0.00 0.00 2.92
4896 5194 0.755686 CCCCTGTCTCTGCCACTATC 59.244 60.000 0.00 0.00 0.00 2.08
4897 5195 0.339859 TCCCCTGTCTCTGCCACTAT 59.660 55.000 0.00 0.00 0.00 2.12
4898 5196 0.116342 TTCCCCTGTCTCTGCCACTA 59.884 55.000 0.00 0.00 0.00 2.74
4899 5197 0.548682 ATTCCCCTGTCTCTGCCACT 60.549 55.000 0.00 0.00 0.00 4.00
4900 5198 1.139853 CTATTCCCCTGTCTCTGCCAC 59.860 57.143 0.00 0.00 0.00 5.01
4901 5199 1.500474 CTATTCCCCTGTCTCTGCCA 58.500 55.000 0.00 0.00 0.00 4.92
4902 5200 0.107643 GCTATTCCCCTGTCTCTGCC 59.892 60.000 0.00 0.00 0.00 4.85
4903 5201 0.833287 TGCTATTCCCCTGTCTCTGC 59.167 55.000 0.00 0.00 0.00 4.26
4904 5202 2.158842 CCTTGCTATTCCCCTGTCTCTG 60.159 54.545 0.00 0.00 0.00 3.35
4905 5203 2.122768 CCTTGCTATTCCCCTGTCTCT 58.877 52.381 0.00 0.00 0.00 3.10
4906 5204 1.141858 CCCTTGCTATTCCCCTGTCTC 59.858 57.143 0.00 0.00 0.00 3.36
4907 5205 1.216990 CCCTTGCTATTCCCCTGTCT 58.783 55.000 0.00 0.00 0.00 3.41
4908 5206 0.466372 GCCCTTGCTATTCCCCTGTC 60.466 60.000 0.00 0.00 33.53 3.51
4909 5207 1.615262 GCCCTTGCTATTCCCCTGT 59.385 57.895 0.00 0.00 33.53 4.00
4910 5208 1.152673 GGCCCTTGCTATTCCCCTG 60.153 63.158 0.00 0.00 37.74 4.45
4911 5209 2.395353 GGGCCCTTGCTATTCCCCT 61.395 63.158 17.04 0.00 37.74 4.79
4912 5210 2.198703 GGGCCCTTGCTATTCCCC 59.801 66.667 17.04 0.00 37.74 4.81
4913 5211 1.152673 CAGGGCCCTTGCTATTCCC 60.153 63.158 26.10 0.00 37.74 3.97
4914 5212 1.829970 GCAGGGCCCTTGCTATTCC 60.830 63.158 26.10 0.01 37.74 3.01
4915 5213 1.829970 GGCAGGGCCCTTGCTATTC 60.830 63.158 32.06 19.15 44.06 1.75
4916 5214 2.280079 GGCAGGGCCCTTGCTATT 59.720 61.111 32.06 8.71 44.06 1.73
4934 5232 2.034124 CAAATGGCTGATGTTAGGGGG 58.966 52.381 0.00 0.00 0.00 5.40
4935 5233 1.410153 GCAAATGGCTGATGTTAGGGG 59.590 52.381 0.00 0.00 40.25 4.79
4936 5234 2.877043 GCAAATGGCTGATGTTAGGG 57.123 50.000 0.00 0.00 40.25 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.