Multiple sequence alignment - TraesCS1A01G215300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G215300 chr1A 100.000 3419 0 0 1 3419 380888581 380891999 0.000000e+00 6314
1 TraesCS1A01G215300 chr1A 96.000 325 12 1 3038 3362 30569592 30569915 8.400000e-146 527
2 TraesCS1A01G215300 chr1D 89.437 2736 140 60 41 2698 303292049 303294713 0.000000e+00 3314
3 TraesCS1A01G215300 chr1D 76.170 235 37 13 2697 2912 303294899 303295133 4.670000e-19 106
4 TraesCS1A01G215300 chr1B 88.491 2711 131 57 1 2638 410666185 410668787 0.000000e+00 3110
5 TraesCS1A01G215300 chr4A 98.160 326 5 1 3038 3363 548568679 548569003 4.950000e-158 568
6 TraesCS1A01G215300 chr4A 95.692 325 11 2 3038 3362 556629427 556629106 1.410000e-143 520
7 TraesCS1A01G215300 chr3A 96.923 325 9 1 3038 3362 690219691 690220014 8.340000e-151 544
8 TraesCS1A01G215300 chr3A 96.353 329 11 1 3038 3366 550145216 550144889 1.080000e-149 540
9 TraesCS1A01G215300 chr3A 96.308 325 11 1 3038 3362 637478646 637478323 1.810000e-147 532
10 TraesCS1A01G215300 chr7A 96.615 325 10 1 3038 3362 652518682 652518359 3.880000e-149 538
11 TraesCS1A01G215300 chr6A 96.308 325 11 1 3038 3362 588365663 588365340 1.810000e-147 532
12 TraesCS1A01G215300 chr2A 97.125 313 9 0 3050 3362 542317665 542317977 2.340000e-146 529


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G215300 chr1A 380888581 380891999 3418 False 6314 6314 100.0000 1 3419 1 chr1A.!!$F2 3418
1 TraesCS1A01G215300 chr1D 303292049 303295133 3084 False 1710 3314 82.8035 41 2912 2 chr1D.!!$F1 2871
2 TraesCS1A01G215300 chr1B 410666185 410668787 2602 False 3110 3110 88.4910 1 2638 1 chr1B.!!$F1 2637

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
162 173 0.035343 CGTTTCTTTCTCCCTCCCCC 60.035 60.0 0.00 0.0 0.0 5.40 F
505 537 0.104855 GGCCATCTGATGCGTGTAGA 59.895 55.0 12.17 0.0 0.0 2.59 F
712 760 0.108585 AAGAGGAGCAAAAGCGGACA 59.891 50.0 0.00 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1603 1691 0.464373 GATCGATGGCAGGGCAGAAA 60.464 55.0 0.54 0.0 0.00 2.52 R
2358 2469 0.399454 AAGCGATCATGGAGGGATGG 59.601 55.0 0.00 0.0 0.00 3.51 R
2476 2587 0.795358 CGCGGTAACAAAATTCGCCC 60.795 55.0 0.00 0.0 42.92 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.537433 CTCGCTGCCTGCCTACCC 62.537 72.222 0.00 0.00 38.78 3.69
84 95 3.329386 GCCTGGGCTTTCTTTTCATTTC 58.671 45.455 4.12 0.00 38.26 2.17
87 98 4.309933 CTGGGCTTTCTTTTCATTTCCAC 58.690 43.478 0.00 0.00 0.00 4.02
159 170 1.672145 CCGACGTTTCTTTCTCCCTCC 60.672 57.143 0.00 0.00 0.00 4.30
160 171 1.672145 CGACGTTTCTTTCTCCCTCCC 60.672 57.143 0.00 0.00 0.00 4.30
161 172 0.691332 ACGTTTCTTTCTCCCTCCCC 59.309 55.000 0.00 0.00 0.00 4.81
162 173 0.035343 CGTTTCTTTCTCCCTCCCCC 60.035 60.000 0.00 0.00 0.00 5.40
257 268 4.550076 ACAGATAGCTAGATTGATGCCC 57.450 45.455 0.00 0.00 0.00 5.36
284 295 1.305201 GAGGCTTGACCAAACGAACA 58.695 50.000 0.00 0.00 43.14 3.18
290 301 3.730715 GCTTGACCAAACGAACAAATGAG 59.269 43.478 0.00 0.00 0.00 2.90
294 305 2.053627 CCAAACGAACAAATGAGCAGC 58.946 47.619 0.00 0.00 0.00 5.25
298 309 4.764679 AACGAACAAATGAGCAGCATAA 57.235 36.364 0.00 0.00 35.78 1.90
299 310 4.764679 ACGAACAAATGAGCAGCATAAA 57.235 36.364 0.00 0.00 35.78 1.40
324 336 2.573920 ACGAGAGTCAAGAGAGGCC 58.426 57.895 0.00 0.00 44.19 5.19
347 360 3.802948 CATCCGATGCCTATAGTACCC 57.197 52.381 0.00 0.00 0.00 3.69
358 371 3.792588 TATAGTACCCGCCGTCGTGGT 62.793 57.143 4.54 4.54 40.57 4.16
376 389 1.610886 GGTACTGTTGGGAGTCCTTGC 60.611 57.143 9.58 0.00 0.00 4.01
428 445 0.165944 GAACAGCGTCCAAATGTCCG 59.834 55.000 0.00 0.00 0.00 4.79
448 465 1.121967 GATTAATACGGCGCGAGAACG 59.878 52.381 12.10 11.06 42.93 3.95
451 468 3.746409 ATACGGCGCGAGAACGACC 62.746 63.158 12.10 0.00 38.01 4.79
456 473 4.712425 CGCGAGAACGACCGGGTT 62.712 66.667 6.32 0.00 42.66 4.11
457 474 2.568090 GCGAGAACGACCGGGTTA 59.432 61.111 6.32 0.00 42.66 2.85
458 475 1.515736 GCGAGAACGACCGGGTTAG 60.516 63.158 6.32 1.16 42.66 2.34
460 477 0.455633 CGAGAACGACCGGGTTAGTG 60.456 60.000 6.32 0.00 42.66 2.74
481 507 4.963953 GTGATTAATCTACGTGCAATGTGC 59.036 41.667 16.24 0.00 45.29 4.57
505 537 0.104855 GGCCATCTGATGCGTGTAGA 59.895 55.000 12.17 0.00 0.00 2.59
506 538 1.270518 GGCCATCTGATGCGTGTAGAT 60.271 52.381 12.17 0.00 0.00 1.98
507 539 2.064762 GCCATCTGATGCGTGTAGATC 58.935 52.381 12.17 0.00 0.00 2.75
508 540 2.681706 CCATCTGATGCGTGTAGATCC 58.318 52.381 12.17 0.00 0.00 3.36
554 589 5.050634 GGAAAGCGGTTAAAACATTTGGTTC 60.051 40.000 0.00 0.00 39.29 3.62
581 616 1.379443 GGGTTTTGGACGGGGGATC 60.379 63.158 0.00 0.00 0.00 3.36
702 750 1.203523 GAGCGAGAGAAAAGAGGAGCA 59.796 52.381 0.00 0.00 0.00 4.26
704 752 2.037772 AGCGAGAGAAAAGAGGAGCAAA 59.962 45.455 0.00 0.00 0.00 3.68
705 753 2.808543 GCGAGAGAAAAGAGGAGCAAAA 59.191 45.455 0.00 0.00 0.00 2.44
706 754 3.120373 GCGAGAGAAAAGAGGAGCAAAAG 60.120 47.826 0.00 0.00 0.00 2.27
707 755 3.120373 CGAGAGAAAAGAGGAGCAAAAGC 60.120 47.826 0.00 0.00 0.00 3.51
708 756 2.810852 AGAGAAAAGAGGAGCAAAAGCG 59.189 45.455 0.00 0.00 0.00 4.68
709 757 1.882623 AGAAAAGAGGAGCAAAAGCGG 59.117 47.619 0.00 0.00 0.00 5.52
710 758 1.880027 GAAAAGAGGAGCAAAAGCGGA 59.120 47.619 0.00 0.00 0.00 5.54
712 760 0.108585 AAGAGGAGCAAAAGCGGACA 59.891 50.000 0.00 0.00 0.00 4.02
880 943 0.475906 CCATCCCATCCAACTCCTCC 59.524 60.000 0.00 0.00 0.00 4.30
886 949 1.383248 ATCCAACTCCTCCTCCCCG 60.383 63.158 0.00 0.00 0.00 5.73
888 951 3.003173 CAACTCCTCCTCCCCGCA 61.003 66.667 0.00 0.00 0.00 5.69
987 1055 4.824515 CCTCCTCGTCCTCGCCCT 62.825 72.222 0.00 0.00 36.96 5.19
988 1056 3.213402 CTCCTCGTCCTCGCCCTC 61.213 72.222 0.00 0.00 36.96 4.30
989 1057 3.997400 CTCCTCGTCCTCGCCCTCA 62.997 68.421 0.00 0.00 36.96 3.86
990 1058 3.827898 CCTCGTCCTCGCCCTCAC 61.828 72.222 0.00 0.00 36.96 3.51
991 1059 3.827898 CTCGTCCTCGCCCTCACC 61.828 72.222 0.00 0.00 36.96 4.02
1188 1276 2.486191 CCTCTTCATGGATTTCTCCCGG 60.486 54.545 0.00 0.00 41.29 5.73
1193 1281 2.044806 ATGGATTTCTCCCGGCGAGG 62.045 60.000 9.30 8.47 41.29 4.63
1203 1291 2.432300 CCGGCGAGGTGGAGGTAAT 61.432 63.158 9.30 0.00 34.51 1.89
1204 1292 1.520666 CGGCGAGGTGGAGGTAATT 59.479 57.895 0.00 0.00 0.00 1.40
1207 1295 1.065709 GGCGAGGTGGAGGTAATTGAA 60.066 52.381 0.00 0.00 0.00 2.69
1208 1296 2.617021 GGCGAGGTGGAGGTAATTGAAA 60.617 50.000 0.00 0.00 0.00 2.69
1236 1324 2.349886 GTGCTGCTTGATTACCTTCTCG 59.650 50.000 0.00 0.00 0.00 4.04
1246 1334 3.777465 TTACCTTCTCGTTCTCGATGG 57.223 47.619 0.00 0.00 45.21 3.51
1274 1362 4.565166 TGTGATTGAGGCGATTAACTAACG 59.435 41.667 0.00 0.00 0.00 3.18
1290 1378 3.474806 CGCACATCTTGGGTCGAC 58.525 61.111 7.13 7.13 33.41 4.20
1466 1554 1.004080 TCGACTTCGACGAGGGAGT 60.004 57.895 11.93 6.15 44.22 3.85
1603 1691 2.126734 GCGCGCTTGCTTGATTGT 60.127 55.556 26.67 0.00 36.08 2.71
1609 1697 1.717645 CGCTTGCTTGATTGTTTCTGC 59.282 47.619 0.00 0.00 0.00 4.26
1636 1726 0.661483 TCGATCGTCGATCTGCATGC 60.661 55.000 27.72 11.82 44.82 4.06
1637 1727 1.612469 CGATCGTCGATCTGCATGCC 61.612 60.000 27.72 5.16 43.74 4.40
1638 1728 0.598419 GATCGTCGATCTGCATGCCA 60.598 55.000 24.71 1.32 36.27 4.92
1639 1729 0.179076 ATCGTCGATCTGCATGCCAA 60.179 50.000 16.68 2.98 0.00 4.52
1649 1751 2.563620 TCTGCATGCCAATTGTTGTGAT 59.436 40.909 16.68 0.00 0.00 3.06
1658 1760 4.561123 GCCAATTGTTGTGATTGATGGTGA 60.561 41.667 4.43 0.00 36.78 4.02
1666 1768 4.133820 TGTGATTGATGGTGAGTTCGTTT 58.866 39.130 0.00 0.00 0.00 3.60
1789 1891 3.237741 GGGAGATGGAGGCGGAGG 61.238 72.222 0.00 0.00 0.00 4.30
2309 2420 3.395054 AGATCAGATCAGACAGGGTGA 57.605 47.619 13.14 0.00 0.00 4.02
2340 2451 0.391793 CCTCTCTTTTCTCCCGTGCC 60.392 60.000 0.00 0.00 0.00 5.01
2357 2468 2.187946 CAGTGGGCTGGACCGATC 59.812 66.667 0.00 0.00 40.62 3.69
2358 2469 3.083997 AGTGGGCTGGACCGATCC 61.084 66.667 0.00 0.00 46.48 3.36
2359 2470 4.176752 GTGGGCTGGACCGATCCC 62.177 72.222 0.00 8.22 45.59 3.85
2386 2497 2.159043 TCCATGATCGCTTCACCTCTTC 60.159 50.000 0.00 0.00 37.11 2.87
2410 2521 7.624549 TCTGCTGGTGATCTAGTAAATCTTTT 58.375 34.615 0.00 0.00 0.00 2.27
2439 2550 8.624701 ACTAATTTGATGATTTGAATCTTGCG 57.375 30.769 5.42 0.00 36.39 4.85
2461 2572 2.031560 TGCGTGACAGTTTTTACTGCTG 59.968 45.455 5.27 0.00 41.19 4.41
2476 2587 2.082366 GCTGGCAACGCGTTGATTG 61.082 57.895 45.98 33.70 42.93 2.67
2479 2590 2.804931 GCAACGCGTTGATTGGGC 60.805 61.111 45.98 30.10 42.93 5.36
2571 2694 0.450184 CGAGGCGGTTAATTGGTTGG 59.550 55.000 0.00 0.00 0.00 3.77
2684 2815 4.034258 TACGCGCGATCCCGATCC 62.034 66.667 39.36 0.00 38.22 3.36
2713 3031 1.068741 GGAGCTATCCGGTACACTTGG 59.931 57.143 0.00 0.00 35.37 3.61
2719 3037 1.072505 CCGGTACACTTGGCCTTGT 59.927 57.895 3.32 7.40 0.00 3.16
2731 3049 2.747686 CCTTGTGGTGCTACCGGT 59.252 61.111 13.98 13.98 42.58 5.28
2745 3063 4.720902 CGGTGCACCAGCCATCCA 62.721 66.667 34.16 0.00 41.13 3.41
2746 3064 2.753043 GGTGCACCAGCCATCCAG 60.753 66.667 31.23 0.00 41.13 3.86
2748 3066 1.077212 GTGCACCAGCCATCCAGAT 60.077 57.895 5.22 0.00 41.13 2.90
2802 3140 7.487822 AAGATATATCTACCATGTCACAGGG 57.512 40.000 15.64 7.03 37.47 4.45
2805 3143 7.903481 AGATATATCTACCATGTCACAGGGAAT 59.097 37.037 17.29 8.14 38.80 3.01
2807 3145 4.927267 TCTACCATGTCACAGGGAATTT 57.073 40.909 17.29 0.00 37.52 1.82
2808 3146 5.255397 TCTACCATGTCACAGGGAATTTT 57.745 39.130 17.29 0.00 37.52 1.82
2809 3147 6.381498 TCTACCATGTCACAGGGAATTTTA 57.619 37.500 17.29 0.00 37.52 1.52
2812 3150 6.739331 ACCATGTCACAGGGAATTTTAAAA 57.261 33.333 17.29 2.51 37.52 1.52
2813 3151 7.130681 ACCATGTCACAGGGAATTTTAAAAA 57.869 32.000 17.29 0.00 37.52 1.94
2895 3235 5.799213 CCAAATTTATGGCCCAAACTAACA 58.201 37.500 0.00 0.00 32.78 2.41
2896 3236 6.234177 CCAAATTTATGGCCCAAACTAACAA 58.766 36.000 0.00 0.00 32.78 2.83
2897 3237 6.712547 CCAAATTTATGGCCCAAACTAACAAA 59.287 34.615 0.00 0.00 32.78 2.83
2898 3238 7.229506 CCAAATTTATGGCCCAAACTAACAAAA 59.770 33.333 0.00 0.00 32.78 2.44
2899 3239 7.977789 AATTTATGGCCCAAACTAACAAAAG 57.022 32.000 0.00 0.00 0.00 2.27
2900 3240 6.487299 TTTATGGCCCAAACTAACAAAAGT 57.513 33.333 0.00 0.00 0.00 2.66
2901 3241 6.487299 TTATGGCCCAAACTAACAAAAGTT 57.513 33.333 0.00 0.00 41.46 2.66
2902 3242 4.394439 TGGCCCAAACTAACAAAAGTTC 57.606 40.909 0.00 0.00 38.76 3.01
2903 3243 4.027437 TGGCCCAAACTAACAAAAGTTCT 58.973 39.130 0.00 0.00 38.76 3.01
2904 3244 5.202004 TGGCCCAAACTAACAAAAGTTCTA 58.798 37.500 0.00 0.00 38.76 2.10
2905 3245 5.836358 TGGCCCAAACTAACAAAAGTTCTAT 59.164 36.000 0.00 0.00 38.76 1.98
2906 3246 6.325286 TGGCCCAAACTAACAAAAGTTCTATT 59.675 34.615 0.00 0.00 38.76 1.73
2907 3247 6.866770 GGCCCAAACTAACAAAAGTTCTATTC 59.133 38.462 0.00 0.00 38.76 1.75
2908 3248 7.430441 GCCCAAACTAACAAAAGTTCTATTCA 58.570 34.615 0.00 0.00 38.76 2.57
2909 3249 8.088365 GCCCAAACTAACAAAAGTTCTATTCAT 58.912 33.333 0.00 0.00 38.76 2.57
2937 3277 9.563748 AGAATATTTATGAATTTTGCCAATGGG 57.436 29.630 0.00 0.00 37.18 4.00
2972 3312 7.280356 TGGCCAATCTAAAAGGAGTACTATTC 58.720 38.462 0.61 0.00 0.00 1.75
3036 3376 9.942850 AGGTCTAATTTATTTTTGGTGAAATGG 57.057 29.630 0.00 0.00 31.96 3.16
3037 3377 9.719355 GGTCTAATTTATTTTTGGTGAAATGGT 57.281 29.630 0.00 0.00 31.96 3.55
3042 3382 8.980143 ATTTATTTTTGGTGAAATGGTAGACG 57.020 30.769 0.00 0.00 31.96 4.18
3043 3383 7.513371 TTATTTTTGGTGAAATGGTAGACGT 57.487 32.000 0.00 0.00 31.96 4.34
3044 3384 8.618702 TTATTTTTGGTGAAATGGTAGACGTA 57.381 30.769 0.00 0.00 31.96 3.57
3045 3385 7.696992 ATTTTTGGTGAAATGGTAGACGTAT 57.303 32.000 0.00 0.00 0.00 3.06
3046 3386 6.489127 TTTTGGTGAAATGGTAGACGTATG 57.511 37.500 0.00 0.00 0.00 2.39
3047 3387 3.527533 TGGTGAAATGGTAGACGTATGC 58.472 45.455 0.00 0.00 0.00 3.14
3048 3388 2.870411 GGTGAAATGGTAGACGTATGCC 59.130 50.000 10.66 10.66 0.00 4.40
3049 3389 2.870411 GTGAAATGGTAGACGTATGCCC 59.130 50.000 14.95 4.36 0.00 5.36
3050 3390 2.158871 TGAAATGGTAGACGTATGCCCC 60.159 50.000 14.95 1.79 0.00 5.80
3051 3391 0.391597 AATGGTAGACGTATGCCCCG 59.608 55.000 14.95 0.00 0.00 5.73
3052 3392 2.028631 GGTAGACGTATGCCCCGC 59.971 66.667 5.96 0.00 0.00 6.13
3053 3393 2.788640 GGTAGACGTATGCCCCGCA 61.789 63.158 5.96 0.00 44.86 5.69
3054 3394 1.590792 GTAGACGTATGCCCCGCAC 60.591 63.158 0.00 0.00 43.04 5.34
3055 3395 3.128632 TAGACGTATGCCCCGCACG 62.129 63.158 0.00 0.00 43.04 5.34
3056 3396 4.807039 GACGTATGCCCCGCACGT 62.807 66.667 2.43 2.43 43.04 4.49
3057 3397 4.382320 ACGTATGCCCCGCACGTT 62.382 61.111 0.00 0.00 43.04 3.99
3058 3398 3.860125 CGTATGCCCCGCACGTTG 61.860 66.667 0.00 0.00 43.04 4.10
3059 3399 2.744709 GTATGCCCCGCACGTTGT 60.745 61.111 0.00 0.00 43.04 3.32
3060 3400 2.032834 TATGCCCCGCACGTTGTT 59.967 55.556 0.00 0.00 43.04 2.83
3061 3401 2.328856 TATGCCCCGCACGTTGTTG 61.329 57.895 0.00 0.00 43.04 3.33
3068 3408 2.642700 GCACGTTGTTGCGGGAAT 59.357 55.556 0.00 0.00 37.48 3.01
3069 3409 1.870383 GCACGTTGTTGCGGGAATA 59.130 52.632 0.00 0.00 37.48 1.75
3070 3410 0.450184 GCACGTTGTTGCGGGAATAT 59.550 50.000 0.00 0.00 37.48 1.28
3071 3411 1.135517 GCACGTTGTTGCGGGAATATT 60.136 47.619 0.00 0.00 37.48 1.28
3072 3412 2.669950 GCACGTTGTTGCGGGAATATTT 60.670 45.455 0.00 0.00 37.48 1.40
3073 3413 3.570559 CACGTTGTTGCGGGAATATTTT 58.429 40.909 0.00 0.00 37.48 1.82
3074 3414 3.363426 CACGTTGTTGCGGGAATATTTTG 59.637 43.478 0.00 0.00 37.48 2.44
3075 3415 2.344142 CGTTGTTGCGGGAATATTTTGC 59.656 45.455 0.00 0.00 0.00 3.68
3076 3416 3.321497 GTTGTTGCGGGAATATTTTGCA 58.679 40.909 6.21 6.21 0.00 4.08
3077 3417 3.667497 TGTTGCGGGAATATTTTGCAA 57.333 38.095 14.93 14.93 42.68 4.08
3078 3418 4.199432 TGTTGCGGGAATATTTTGCAAT 57.801 36.364 19.26 0.00 45.95 3.56
3079 3419 5.330455 TGTTGCGGGAATATTTTGCAATA 57.670 34.783 19.26 15.80 45.95 1.90
3080 3420 5.105752 TGTTGCGGGAATATTTTGCAATAC 58.894 37.500 19.26 12.41 45.95 1.89
3081 3421 4.991153 TGCGGGAATATTTTGCAATACA 57.009 36.364 0.00 0.00 31.69 2.29
3082 3422 5.528043 TGCGGGAATATTTTGCAATACAT 57.472 34.783 0.00 0.00 31.69 2.29
3083 3423 5.911752 TGCGGGAATATTTTGCAATACATT 58.088 33.333 0.00 0.00 31.69 2.71
3084 3424 6.344500 TGCGGGAATATTTTGCAATACATTT 58.656 32.000 0.00 0.00 31.69 2.32
3085 3425 6.478344 TGCGGGAATATTTTGCAATACATTTC 59.522 34.615 0.00 0.00 31.69 2.17
3086 3426 6.701400 GCGGGAATATTTTGCAATACATTTCT 59.299 34.615 0.00 0.00 0.00 2.52
3087 3427 7.865385 GCGGGAATATTTTGCAATACATTTCTA 59.135 33.333 0.00 0.00 0.00 2.10
3088 3428 9.743057 CGGGAATATTTTGCAATACATTTCTAA 57.257 29.630 0.00 0.00 0.00 2.10
3239 3579 7.878477 CATGTTTGCATGTTGAAGTTAATCT 57.122 32.000 0.00 0.00 45.48 2.40
3240 3580 8.301730 CATGTTTGCATGTTGAAGTTAATCTT 57.698 30.769 0.00 0.00 45.48 2.40
3241 3581 8.767085 CATGTTTGCATGTTGAAGTTAATCTTT 58.233 29.630 0.00 0.00 45.48 2.52
3242 3582 8.715191 TGTTTGCATGTTGAAGTTAATCTTTT 57.285 26.923 0.00 0.00 36.40 2.27
3243 3583 8.816144 TGTTTGCATGTTGAAGTTAATCTTTTC 58.184 29.630 0.00 0.00 36.40 2.29
3244 3584 7.945033 TTGCATGTTGAAGTTAATCTTTTCC 57.055 32.000 0.00 0.00 36.40 3.13
3245 3585 7.288810 TGCATGTTGAAGTTAATCTTTTCCT 57.711 32.000 0.00 0.00 36.40 3.36
3246 3586 8.402798 TGCATGTTGAAGTTAATCTTTTCCTA 57.597 30.769 0.00 0.00 36.40 2.94
3247 3587 9.023962 TGCATGTTGAAGTTAATCTTTTCCTAT 57.976 29.630 0.00 0.00 36.40 2.57
3248 3588 9.294030 GCATGTTGAAGTTAATCTTTTCCTATG 57.706 33.333 0.00 0.00 36.40 2.23
3251 3591 9.793259 TGTTGAAGTTAATCTTTTCCTATGACT 57.207 29.630 0.00 0.00 36.40 3.41
3261 3601 9.471702 AATCTTTTCCTATGACTCATTGAATGT 57.528 29.630 4.93 0.00 0.00 2.71
3262 3602 8.868522 TCTTTTCCTATGACTCATTGAATGTT 57.131 30.769 4.93 0.00 0.00 2.71
3263 3603 8.733458 TCTTTTCCTATGACTCATTGAATGTTG 58.267 33.333 4.93 2.64 0.00 3.33
3264 3604 8.634335 TTTTCCTATGACTCATTGAATGTTGA 57.366 30.769 4.93 0.00 0.00 3.18
3265 3605 8.634335 TTTCCTATGACTCATTGAATGTTGAA 57.366 30.769 4.93 0.00 0.00 2.69
3266 3606 7.854557 TCCTATGACTCATTGAATGTTGAAG 57.145 36.000 4.93 0.00 0.00 3.02
3267 3607 7.397221 TCCTATGACTCATTGAATGTTGAAGT 58.603 34.615 4.93 1.04 0.00 3.01
3268 3608 7.335171 TCCTATGACTCATTGAATGTTGAAGTG 59.665 37.037 4.93 0.00 0.00 3.16
3269 3609 5.694231 TGACTCATTGAATGTTGAAGTGG 57.306 39.130 4.93 0.00 0.00 4.00
3270 3610 4.520111 TGACTCATTGAATGTTGAAGTGGG 59.480 41.667 4.93 0.00 0.00 4.61
3271 3611 4.473444 ACTCATTGAATGTTGAAGTGGGT 58.527 39.130 4.93 0.00 0.00 4.51
3272 3612 4.520492 ACTCATTGAATGTTGAAGTGGGTC 59.480 41.667 4.93 0.00 0.00 4.46
3273 3613 4.728772 TCATTGAATGTTGAAGTGGGTCT 58.271 39.130 4.93 0.00 0.00 3.85
3274 3614 5.139727 TCATTGAATGTTGAAGTGGGTCTT 58.860 37.500 4.93 0.00 39.32 3.01
3275 3615 5.598005 TCATTGAATGTTGAAGTGGGTCTTT 59.402 36.000 4.93 0.00 36.40 2.52
3276 3616 5.930837 TTGAATGTTGAAGTGGGTCTTTT 57.069 34.783 0.00 0.00 36.40 2.27
3277 3617 5.514274 TGAATGTTGAAGTGGGTCTTTTC 57.486 39.130 0.00 0.00 36.40 2.29
3278 3618 5.200483 TGAATGTTGAAGTGGGTCTTTTCT 58.800 37.500 0.00 0.00 36.40 2.52
3279 3619 6.361433 TGAATGTTGAAGTGGGTCTTTTCTA 58.639 36.000 0.00 0.00 36.40 2.10
3280 3620 6.831353 TGAATGTTGAAGTGGGTCTTTTCTAA 59.169 34.615 0.00 0.00 36.40 2.10
3281 3621 7.505585 TGAATGTTGAAGTGGGTCTTTTCTAAT 59.494 33.333 0.00 0.00 36.40 1.73
3282 3622 6.633500 TGTTGAAGTGGGTCTTTTCTAATG 57.367 37.500 0.00 0.00 36.40 1.90
3283 3623 5.009610 TGTTGAAGTGGGTCTTTTCTAATGC 59.990 40.000 0.00 0.00 36.40 3.56
3284 3624 4.724399 TGAAGTGGGTCTTTTCTAATGCA 58.276 39.130 0.00 0.00 36.40 3.96
3285 3625 5.324409 TGAAGTGGGTCTTTTCTAATGCAT 58.676 37.500 0.00 0.00 36.40 3.96
3286 3626 5.183713 TGAAGTGGGTCTTTTCTAATGCATG 59.816 40.000 0.00 0.00 36.40 4.06
3287 3627 4.666512 AGTGGGTCTTTTCTAATGCATGT 58.333 39.130 0.00 0.00 0.00 3.21
3288 3628 5.079643 AGTGGGTCTTTTCTAATGCATGTT 58.920 37.500 0.00 0.00 0.00 2.71
3289 3629 5.047802 AGTGGGTCTTTTCTAATGCATGTTG 60.048 40.000 0.00 0.00 0.00 3.33
3290 3630 4.176271 GGGTCTTTTCTAATGCATGTTGC 58.824 43.478 0.00 0.00 45.29 4.17
3291 3631 4.082026 GGGTCTTTTCTAATGCATGTTGCT 60.082 41.667 0.00 0.00 45.31 3.91
3292 3632 5.473039 GGTCTTTTCTAATGCATGTTGCTT 58.527 37.500 0.00 0.00 45.31 3.91
3293 3633 5.346822 GGTCTTTTCTAATGCATGTTGCTTG 59.653 40.000 0.00 0.00 45.31 4.01
3294 3634 6.151691 GTCTTTTCTAATGCATGTTGCTTGA 58.848 36.000 0.00 0.00 45.31 3.02
3295 3635 6.810182 GTCTTTTCTAATGCATGTTGCTTGAT 59.190 34.615 0.00 0.00 45.31 2.57
3296 3636 6.809689 TCTTTTCTAATGCATGTTGCTTGATG 59.190 34.615 0.00 0.00 45.31 3.07
3297 3637 5.900865 TTCTAATGCATGTTGCTTGATGA 57.099 34.783 0.00 0.00 45.31 2.92
3298 3638 5.494632 TCTAATGCATGTTGCTTGATGAG 57.505 39.130 0.00 0.00 45.31 2.90
3299 3639 3.520290 AATGCATGTTGCTTGATGAGG 57.480 42.857 0.00 0.00 45.31 3.86
3300 3640 1.913778 TGCATGTTGCTTGATGAGGT 58.086 45.000 0.75 0.00 45.31 3.85
3301 3641 1.542472 TGCATGTTGCTTGATGAGGTG 59.458 47.619 0.75 0.00 45.31 4.00
3302 3642 1.542915 GCATGTTGCTTGATGAGGTGT 59.457 47.619 0.00 0.00 40.96 4.16
3303 3643 2.415090 GCATGTTGCTTGATGAGGTGTC 60.415 50.000 0.00 0.00 40.96 3.67
3304 3644 2.636647 TGTTGCTTGATGAGGTGTCA 57.363 45.000 0.00 0.00 37.02 3.58
3305 3645 3.144657 TGTTGCTTGATGAGGTGTCAT 57.855 42.857 0.00 0.00 46.75 3.06
3306 3646 2.815503 TGTTGCTTGATGAGGTGTCATG 59.184 45.455 0.00 0.00 43.92 3.07
3307 3647 1.456296 TGCTTGATGAGGTGTCATGC 58.544 50.000 6.95 6.95 43.92 4.06
3308 3648 1.003928 TGCTTGATGAGGTGTCATGCT 59.996 47.619 12.94 0.00 43.92 3.79
3309 3649 2.089980 GCTTGATGAGGTGTCATGCTT 58.910 47.619 6.71 0.00 43.92 3.91
3310 3650 2.159421 GCTTGATGAGGTGTCATGCTTG 60.159 50.000 6.71 0.00 43.92 4.01
3311 3651 1.456296 TGATGAGGTGTCATGCTTGC 58.544 50.000 0.00 0.00 43.92 4.01
3312 3652 1.271488 TGATGAGGTGTCATGCTTGCA 60.271 47.619 0.00 0.00 43.92 4.08
3313 3653 2.022195 GATGAGGTGTCATGCTTGCAT 58.978 47.619 1.81 1.81 43.92 3.96
3314 3654 1.170442 TGAGGTGTCATGCTTGCATG 58.830 50.000 24.70 24.70 0.00 4.06
3315 3655 1.171308 GAGGTGTCATGCTTGCATGT 58.829 50.000 27.80 13.61 34.39 3.21
3316 3656 1.542915 GAGGTGTCATGCTTGCATGTT 59.457 47.619 27.80 13.97 34.39 2.71
3317 3657 1.271379 AGGTGTCATGCTTGCATGTTG 59.729 47.619 27.80 11.01 34.39 3.33
3318 3658 1.270274 GGTGTCATGCTTGCATGTTGA 59.730 47.619 27.80 12.95 34.39 3.18
3319 3659 2.592194 GTGTCATGCTTGCATGTTGAG 58.408 47.619 27.80 8.97 34.39 3.02
3320 3660 2.227149 GTGTCATGCTTGCATGTTGAGA 59.773 45.455 27.80 11.67 34.39 3.27
3321 3661 2.486592 TGTCATGCTTGCATGTTGAGAG 59.513 45.455 27.80 7.73 34.39 3.20
3322 3662 2.745821 GTCATGCTTGCATGTTGAGAGA 59.254 45.455 27.80 10.21 34.39 3.10
3323 3663 3.189910 GTCATGCTTGCATGTTGAGAGAA 59.810 43.478 27.80 9.59 34.39 2.87
3324 3664 3.822167 TCATGCTTGCATGTTGAGAGAAA 59.178 39.130 27.80 8.99 34.39 2.52
3325 3665 4.461431 TCATGCTTGCATGTTGAGAGAAAT 59.539 37.500 27.80 0.00 34.39 2.17
3326 3666 5.648960 TCATGCTTGCATGTTGAGAGAAATA 59.351 36.000 27.80 7.94 34.39 1.40
3327 3667 5.556355 TGCTTGCATGTTGAGAGAAATAG 57.444 39.130 1.14 0.00 0.00 1.73
3328 3668 4.397103 TGCTTGCATGTTGAGAGAAATAGG 59.603 41.667 1.14 0.00 0.00 2.57
3329 3669 4.397417 GCTTGCATGTTGAGAGAAATAGGT 59.603 41.667 1.14 0.00 0.00 3.08
3330 3670 5.105997 GCTTGCATGTTGAGAGAAATAGGTT 60.106 40.000 1.14 0.00 0.00 3.50
3331 3671 6.094048 GCTTGCATGTTGAGAGAAATAGGTTA 59.906 38.462 1.14 0.00 0.00 2.85
3332 3672 7.615582 TTGCATGTTGAGAGAAATAGGTTAG 57.384 36.000 0.00 0.00 0.00 2.34
3333 3673 6.711277 TGCATGTTGAGAGAAATAGGTTAGT 58.289 36.000 0.00 0.00 0.00 2.24
3334 3674 6.595326 TGCATGTTGAGAGAAATAGGTTAGTG 59.405 38.462 0.00 0.00 0.00 2.74
3335 3675 6.037610 GCATGTTGAGAGAAATAGGTTAGTGG 59.962 42.308 0.00 0.00 0.00 4.00
3336 3676 6.049955 TGTTGAGAGAAATAGGTTAGTGGG 57.950 41.667 0.00 0.00 0.00 4.61
3337 3677 5.045869 TGTTGAGAGAAATAGGTTAGTGGGG 60.046 44.000 0.00 0.00 0.00 4.96
3338 3678 4.037927 TGAGAGAAATAGGTTAGTGGGGG 58.962 47.826 0.00 0.00 0.00 5.40
3339 3679 2.778270 AGAGAAATAGGTTAGTGGGGGC 59.222 50.000 0.00 0.00 0.00 5.80
3340 3680 2.778270 GAGAAATAGGTTAGTGGGGGCT 59.222 50.000 0.00 0.00 0.00 5.19
3341 3681 3.971971 GAGAAATAGGTTAGTGGGGGCTA 59.028 47.826 0.00 0.00 0.00 3.93
3342 3682 3.974642 AGAAATAGGTTAGTGGGGGCTAG 59.025 47.826 0.00 0.00 0.00 3.42
3343 3683 1.730851 ATAGGTTAGTGGGGGCTAGC 58.269 55.000 6.04 6.04 0.00 3.42
3344 3684 0.640495 TAGGTTAGTGGGGGCTAGCT 59.360 55.000 15.72 0.00 0.00 3.32
3345 3685 0.640495 AGGTTAGTGGGGGCTAGCTA 59.360 55.000 15.72 0.00 0.00 3.32
3346 3686 1.223337 AGGTTAGTGGGGGCTAGCTAT 59.777 52.381 15.72 0.00 0.00 2.97
3347 3687 2.055579 GGTTAGTGGGGGCTAGCTATT 58.944 52.381 15.72 0.00 0.00 1.73
3348 3688 2.442126 GGTTAGTGGGGGCTAGCTATTT 59.558 50.000 15.72 0.00 0.00 1.40
3349 3689 3.649502 GGTTAGTGGGGGCTAGCTATTTA 59.350 47.826 15.72 0.00 0.00 1.40
3350 3690 4.262938 GGTTAGTGGGGGCTAGCTATTTAG 60.263 50.000 15.72 0.00 0.00 1.85
3351 3691 3.346146 AGTGGGGGCTAGCTATTTAGA 57.654 47.619 15.72 0.00 0.00 2.10
3352 3692 3.875571 AGTGGGGGCTAGCTATTTAGAT 58.124 45.455 15.72 0.00 0.00 1.98
3353 3693 5.024803 AGTGGGGGCTAGCTATTTAGATA 57.975 43.478 15.72 0.00 0.00 1.98
3354 3694 5.604752 AGTGGGGGCTAGCTATTTAGATAT 58.395 41.667 15.72 0.00 0.00 1.63
3355 3695 6.753134 AGTGGGGGCTAGCTATTTAGATATA 58.247 40.000 15.72 0.00 0.00 0.86
3356 3696 6.841755 AGTGGGGGCTAGCTATTTAGATATAG 59.158 42.308 15.72 0.00 0.00 1.31
3357 3697 6.839657 GTGGGGGCTAGCTATTTAGATATAGA 59.160 42.308 15.72 0.00 31.10 1.98
3358 3698 7.344871 GTGGGGGCTAGCTATTTAGATATAGAA 59.655 40.741 15.72 0.00 31.10 2.10
3359 3699 7.565398 TGGGGGCTAGCTATTTAGATATAGAAG 59.435 40.741 15.72 0.00 31.10 2.85
3360 3700 7.785506 GGGGGCTAGCTATTTAGATATAGAAGA 59.214 40.741 15.72 0.00 31.10 2.87
3361 3701 9.374711 GGGGCTAGCTATTTAGATATAGAAGAT 57.625 37.037 15.72 0.00 31.10 2.40
3381 3721 9.199982 AGAAGATATGTGCAAAATTGTTTTCAG 57.800 29.630 0.00 0.00 0.00 3.02
3382 3722 9.195411 GAAGATATGTGCAAAATTGTTTTCAGA 57.805 29.630 0.00 0.00 0.00 3.27
3383 3723 9.715121 AAGATATGTGCAAAATTGTTTTCAGAT 57.285 25.926 0.00 0.00 0.00 2.90
3384 3724 9.715121 AGATATGTGCAAAATTGTTTTCAGATT 57.285 25.926 0.00 0.00 0.00 2.40
3412 3752 6.446659 AAATACTTAATGTGCGTTTTGTGC 57.553 33.333 0.00 0.00 0.00 4.57
3413 3753 2.380660 ACTTAATGTGCGTTTTGTGCG 58.619 42.857 0.00 0.00 34.24 5.34
3414 3754 2.032302 ACTTAATGTGCGTTTTGTGCGA 59.968 40.909 0.00 0.00 34.24 5.10
3415 3755 2.979401 TAATGTGCGTTTTGTGCGAT 57.021 40.000 0.00 0.00 34.24 4.58
3416 3756 2.132740 AATGTGCGTTTTGTGCGATT 57.867 40.000 0.00 0.00 34.24 3.34
3417 3757 1.407434 ATGTGCGTTTTGTGCGATTG 58.593 45.000 0.00 0.00 34.24 2.67
3418 3758 0.593518 TGTGCGTTTTGTGCGATTGG 60.594 50.000 0.00 0.00 34.24 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 2.361610 CAGGAAATGCAGGCGGGT 60.362 61.111 0.00 0.00 0.00 5.28
69 70 2.731451 GCGGTGGAAATGAAAAGAAAGC 59.269 45.455 0.00 0.00 0.00 3.51
110 121 2.720134 GCTTCTCCTCCTCTGCGCT 61.720 63.158 9.73 0.00 0.00 5.92
111 122 2.202864 GCTTCTCCTCCTCTGCGC 60.203 66.667 0.00 0.00 0.00 6.09
112 123 2.057408 AGGCTTCTCCTCCTCTGCG 61.057 63.158 0.00 0.00 43.20 5.18
113 124 4.048696 AGGCTTCTCCTCCTCTGC 57.951 61.111 0.00 0.00 43.20 4.26
159 170 0.545309 TGACAACAGGGAGAGAGGGG 60.545 60.000 0.00 0.00 0.00 4.79
160 171 1.209019 CATGACAACAGGGAGAGAGGG 59.791 57.143 0.00 0.00 0.00 4.30
161 172 1.905215 ACATGACAACAGGGAGAGAGG 59.095 52.381 0.00 0.00 31.68 3.69
162 173 2.354503 CCACATGACAACAGGGAGAGAG 60.355 54.545 0.00 0.00 31.68 3.20
298 309 5.263968 TCTCTTGACTCTCGTGTCTTTTT 57.736 39.130 0.00 0.00 37.79 1.94
299 310 4.261825 CCTCTCTTGACTCTCGTGTCTTTT 60.262 45.833 0.00 0.00 37.79 2.27
340 353 2.529454 TACCACGACGGCGGGTACTA 62.529 60.000 22.26 7.40 39.94 1.82
341 354 3.918253 TACCACGACGGCGGGTACT 62.918 63.158 22.26 3.75 39.94 2.73
342 355 3.439540 TACCACGACGGCGGGTAC 61.440 66.667 22.26 0.00 39.94 3.34
346 359 3.562779 AACAGTACCACGACGGCGG 62.563 63.158 18.49 3.35 43.17 6.13
347 360 2.049802 AACAGTACCACGACGGCG 60.050 61.111 10.39 10.39 44.79 6.46
358 371 1.347707 CTGCAAGGACTCCCAACAGTA 59.652 52.381 0.00 0.00 33.88 2.74
389 406 2.232298 CTCGGTCCTCTGCCCAAGTC 62.232 65.000 0.00 0.00 0.00 3.01
428 445 1.121967 CGTTCTCGCGCCGTATTAATC 59.878 52.381 0.00 0.00 0.00 1.75
441 458 0.455633 CACTAACCCGGTCGTTCTCG 60.456 60.000 0.00 0.00 38.55 4.04
448 465 5.218139 CGTAGATTAATCACTAACCCGGTC 58.782 45.833 17.56 0.00 0.00 4.79
451 468 4.443394 GCACGTAGATTAATCACTAACCCG 59.557 45.833 17.56 9.99 0.00 5.28
452 469 5.353938 TGCACGTAGATTAATCACTAACCC 58.646 41.667 17.56 1.50 0.00 4.11
453 470 6.897259 TTGCACGTAGATTAATCACTAACC 57.103 37.500 17.56 2.85 0.00 2.85
454 471 7.846107 CACATTGCACGTAGATTAATCACTAAC 59.154 37.037 17.56 8.71 0.00 2.34
455 472 7.465379 GCACATTGCACGTAGATTAATCACTAA 60.465 37.037 17.56 3.65 44.26 2.24
456 473 6.019075 GCACATTGCACGTAGATTAATCACTA 60.019 38.462 17.56 0.00 44.26 2.74
457 474 5.220662 GCACATTGCACGTAGATTAATCACT 60.221 40.000 17.56 0.44 44.26 3.41
458 475 4.963953 GCACATTGCACGTAGATTAATCAC 59.036 41.667 17.56 11.80 44.26 3.06
481 507 2.322830 CGCATCAGATGGCCATCGG 61.323 63.158 34.48 33.62 42.48 4.18
505 537 3.378112 CGTTATTGTGCTGTTGGATGGAT 59.622 43.478 0.00 0.00 0.00 3.41
506 538 2.746904 CGTTATTGTGCTGTTGGATGGA 59.253 45.455 0.00 0.00 0.00 3.41
507 539 2.746904 TCGTTATTGTGCTGTTGGATGG 59.253 45.455 0.00 0.00 0.00 3.51
508 540 4.406069 CTTCGTTATTGTGCTGTTGGATG 58.594 43.478 0.00 0.00 0.00 3.51
554 589 1.228124 TCCAAAACCCACCAGCTCG 60.228 57.895 0.00 0.00 0.00 5.03
581 616 2.180017 GCATGCACGCCTTGAAGG 59.820 61.111 14.21 6.92 38.80 3.46
702 750 2.203337 TGCCTGCTGTCCGCTTTT 60.203 55.556 0.00 0.00 40.11 2.27
848 911 4.301027 GATGGCGGTAGGAGGCGG 62.301 72.222 0.00 0.00 36.92 6.13
965 1033 3.827898 GAGGACGAGGAGGCGTGG 61.828 72.222 0.00 0.00 45.72 4.94
1031 1102 3.132139 CCTCGGAGCGGAAGTCGA 61.132 66.667 0.00 0.00 42.43 4.20
1188 1276 2.396590 TTCAATTACCTCCACCTCGC 57.603 50.000 0.00 0.00 0.00 5.03
1193 1281 3.485216 CGCGATGTTTCAATTACCTCCAC 60.485 47.826 0.00 0.00 0.00 4.02
1203 1291 1.082169 GCAGCACGCGATGTTTCAA 60.082 52.632 15.93 0.00 0.00 2.69
1204 1292 2.555782 GCAGCACGCGATGTTTCA 59.444 55.556 15.93 0.00 0.00 2.69
1236 1324 0.669318 TCACAACCGCCATCGAGAAC 60.669 55.000 0.00 0.00 38.10 3.01
1246 1334 1.369091 ATCGCCTCAATCACAACCGC 61.369 55.000 0.00 0.00 0.00 5.68
1274 1362 2.740714 GCGTCGACCCAAGATGTGC 61.741 63.158 10.58 0.00 0.00 4.57
1383 1471 2.675242 TATCACCTTGTGCCCCGGG 61.675 63.158 15.80 15.80 32.98 5.73
1603 1691 0.464373 GATCGATGGCAGGGCAGAAA 60.464 55.000 0.54 0.00 0.00 2.52
1609 1697 2.355126 CGACGATCGATGGCAGGG 60.355 66.667 24.34 0.00 43.74 4.45
1631 1721 3.327626 TCAATCACAACAATTGGCATGC 58.672 40.909 9.90 9.90 35.32 4.06
1636 1726 5.136816 TCACCATCAATCACAACAATTGG 57.863 39.130 10.83 0.00 35.32 3.16
1637 1727 5.775686 ACTCACCATCAATCACAACAATTG 58.224 37.500 3.24 3.24 35.81 2.32
1638 1728 6.409524 AACTCACCATCAATCACAACAATT 57.590 33.333 0.00 0.00 0.00 2.32
1639 1729 5.335113 CGAACTCACCATCAATCACAACAAT 60.335 40.000 0.00 0.00 0.00 2.71
1666 1768 4.653868 AGTCTCTCCGTCTACAGAGAAAA 58.346 43.478 0.23 0.00 45.36 2.29
1669 1771 2.168936 GGAGTCTCTCCGTCTACAGAGA 59.831 54.545 0.00 0.00 41.08 3.10
2022 2124 2.529389 ACCTCCACCACCCTGTCC 60.529 66.667 0.00 0.00 0.00 4.02
2309 2420 7.350382 GGAGAAAAGAGAGGGAAGGAATTATT 58.650 38.462 0.00 0.00 0.00 1.40
2340 2451 2.187946 GATCGGTCCAGCCCACTG 59.812 66.667 0.00 0.00 44.05 3.66
2353 2464 1.209019 GATCATGGAGGGATGGGATCG 59.791 57.143 0.00 0.00 0.00 3.69
2357 2468 1.002868 GCGATCATGGAGGGATGGG 60.003 63.158 0.00 0.00 0.00 4.00
2358 2469 0.399454 AAGCGATCATGGAGGGATGG 59.601 55.000 0.00 0.00 0.00 3.51
2359 2470 1.071228 TGAAGCGATCATGGAGGGATG 59.929 52.381 0.00 0.00 31.50 3.51
2386 2497 7.856145 AAAAGATTTACTAGATCACCAGCAG 57.144 36.000 0.00 0.00 0.00 4.24
2415 2526 8.529102 CACGCAAGATTCAAATCATCAAATTAG 58.471 33.333 5.59 0.00 43.62 1.73
2436 2547 1.007580 TAAAAACTGTCACGCACGCA 58.992 45.000 0.00 0.00 0.00 5.24
2437 2548 1.004292 AGTAAAAACTGTCACGCACGC 60.004 47.619 0.00 0.00 0.00 5.34
2438 2549 2.624766 CAGTAAAAACTGTCACGCACG 58.375 47.619 0.00 0.00 33.32 5.34
2439 2550 2.031683 AGCAGTAAAAACTGTCACGCAC 59.968 45.455 7.32 0.00 39.76 5.34
2461 2572 2.126502 CCCAATCAACGCGTTGCC 60.127 61.111 39.77 0.00 40.24 4.52
2476 2587 0.795358 CGCGGTAACAAAATTCGCCC 60.795 55.000 0.00 0.00 42.92 6.13
2479 2590 0.972013 GTGCGCGGTAACAAAATTCG 59.028 50.000 8.83 0.00 0.00 3.34
2710 3028 1.228429 GGTAGCACCACAAGGCCAA 60.228 57.895 5.01 0.00 38.42 4.52
2713 3031 2.746277 CCGGTAGCACCACAAGGC 60.746 66.667 0.00 0.00 38.47 4.35
2731 3049 0.394762 GAATCTGGATGGCTGGTGCA 60.395 55.000 0.00 0.00 41.91 4.57
2735 3053 3.784511 ATAGTGAATCTGGATGGCTGG 57.215 47.619 0.00 0.00 0.00 4.85
2777 3115 8.398743 TCCCTGTGACATGGTAGATATATCTTA 58.601 37.037 20.13 8.25 38.32 2.10
2780 3118 7.482169 TTCCCTGTGACATGGTAGATATATC 57.518 40.000 6.79 4.42 0.00 1.63
2785 3123 5.456921 AAATTCCCTGTGACATGGTAGAT 57.543 39.130 6.79 0.00 0.00 1.98
2788 3126 7.841282 TTTTAAAATTCCCTGTGACATGGTA 57.159 32.000 6.79 0.00 0.00 3.25
2836 3174 5.102313 GCAACTGCTGACTTTGTAGTTTTT 58.898 37.500 0.00 0.00 38.06 1.94
2839 3177 2.618709 GGCAACTGCTGACTTTGTAGTT 59.381 45.455 1.06 0.00 40.10 2.24
2842 3180 2.340210 TGGCAACTGCTGACTTTGTA 57.660 45.000 1.06 0.00 41.70 2.41
2911 3251 9.563748 CCCATTGGCAAAATTCATAAATATTCT 57.436 29.630 3.01 0.00 0.00 2.40
2938 3278 7.563906 TCCTTTTAGATTGGCCATAAATTTGG 58.436 34.615 6.09 11.22 39.94 3.28
2939 3279 8.260114 ACTCCTTTTAGATTGGCCATAAATTTG 58.740 33.333 6.09 2.91 0.00 2.32
2940 3280 8.379428 ACTCCTTTTAGATTGGCCATAAATTT 57.621 30.769 6.09 0.00 0.00 1.82
2941 3281 7.978099 ACTCCTTTTAGATTGGCCATAAATT 57.022 32.000 6.09 0.00 0.00 1.82
2942 3282 8.282256 AGTACTCCTTTTAGATTGGCCATAAAT 58.718 33.333 6.09 0.00 0.00 1.40
2943 3283 7.639378 AGTACTCCTTTTAGATTGGCCATAAA 58.361 34.615 6.09 6.04 0.00 1.40
2944 3284 7.208064 AGTACTCCTTTTAGATTGGCCATAA 57.792 36.000 6.09 0.00 0.00 1.90
2945 3285 6.824958 AGTACTCCTTTTAGATTGGCCATA 57.175 37.500 6.09 0.00 0.00 2.74
2946 3286 5.717119 AGTACTCCTTTTAGATTGGCCAT 57.283 39.130 6.09 0.00 0.00 4.40
2947 3287 6.824958 ATAGTACTCCTTTTAGATTGGCCA 57.175 37.500 0.00 0.00 0.00 5.36
2948 3288 7.280356 TGAATAGTACTCCTTTTAGATTGGCC 58.720 38.462 0.00 0.00 0.00 5.36
2949 3289 8.910351 ATGAATAGTACTCCTTTTAGATTGGC 57.090 34.615 0.00 0.00 0.00 4.52
3010 3350 9.942850 CCATTTCACCAAAAATAAATTAGACCT 57.057 29.630 0.00 0.00 0.00 3.85
3011 3351 9.719355 ACCATTTCACCAAAAATAAATTAGACC 57.281 29.630 0.00 0.00 0.00 3.85
3016 3356 9.418045 CGTCTACCATTTCACCAAAAATAAATT 57.582 29.630 0.00 0.00 0.00 1.82
3017 3357 8.581578 ACGTCTACCATTTCACCAAAAATAAAT 58.418 29.630 0.00 0.00 0.00 1.40
3018 3358 7.942990 ACGTCTACCATTTCACCAAAAATAAA 58.057 30.769 0.00 0.00 0.00 1.40
3019 3359 7.513371 ACGTCTACCATTTCACCAAAAATAA 57.487 32.000 0.00 0.00 0.00 1.40
3020 3360 8.670135 CATACGTCTACCATTTCACCAAAAATA 58.330 33.333 0.00 0.00 0.00 1.40
3021 3361 7.535139 CATACGTCTACCATTTCACCAAAAAT 58.465 34.615 0.00 0.00 0.00 1.82
3022 3362 6.568844 GCATACGTCTACCATTTCACCAAAAA 60.569 38.462 0.00 0.00 0.00 1.94
3023 3363 5.106475 GCATACGTCTACCATTTCACCAAAA 60.106 40.000 0.00 0.00 0.00 2.44
3024 3364 4.393680 GCATACGTCTACCATTTCACCAAA 59.606 41.667 0.00 0.00 0.00 3.28
3025 3365 3.936453 GCATACGTCTACCATTTCACCAA 59.064 43.478 0.00 0.00 0.00 3.67
3026 3366 3.527533 GCATACGTCTACCATTTCACCA 58.472 45.455 0.00 0.00 0.00 4.17
3027 3367 2.870411 GGCATACGTCTACCATTTCACC 59.130 50.000 0.00 0.00 0.00 4.02
3028 3368 2.870411 GGGCATACGTCTACCATTTCAC 59.130 50.000 0.00 0.00 0.00 3.18
3029 3369 2.158871 GGGGCATACGTCTACCATTTCA 60.159 50.000 0.00 0.00 0.00 2.69
3030 3370 2.490991 GGGGCATACGTCTACCATTTC 58.509 52.381 0.00 0.00 0.00 2.17
3031 3371 1.202604 CGGGGCATACGTCTACCATTT 60.203 52.381 0.00 0.00 0.00 2.32
3032 3372 0.391597 CGGGGCATACGTCTACCATT 59.608 55.000 0.00 0.00 0.00 3.16
3033 3373 2.046938 CGGGGCATACGTCTACCAT 58.953 57.895 0.00 0.00 0.00 3.55
3034 3374 2.788640 GCGGGGCATACGTCTACCA 61.789 63.158 0.00 0.00 0.00 3.25
3035 3375 2.028631 GCGGGGCATACGTCTACC 59.971 66.667 0.00 0.00 0.00 3.18
3036 3376 1.590792 GTGCGGGGCATACGTCTAC 60.591 63.158 0.00 0.00 41.91 2.59
3037 3377 2.809706 GTGCGGGGCATACGTCTA 59.190 61.111 0.00 0.00 41.91 2.59
3038 3378 4.508128 CGTGCGGGGCATACGTCT 62.508 66.667 0.00 0.00 41.91 4.18
3039 3379 4.807039 ACGTGCGGGGCATACGTC 62.807 66.667 0.00 0.00 41.91 4.34
3040 3380 4.382320 AACGTGCGGGGCATACGT 62.382 61.111 0.00 0.00 41.60 3.57
3041 3381 3.860125 CAACGTGCGGGGCATACG 61.860 66.667 0.00 0.00 41.91 3.06
3042 3382 2.329614 AACAACGTGCGGGGCATAC 61.330 57.895 0.00 0.00 41.91 2.39
3043 3383 2.032834 AACAACGTGCGGGGCATA 59.967 55.556 0.00 0.00 41.91 3.14
3044 3384 3.669344 CAACAACGTGCGGGGCAT 61.669 61.111 0.00 0.00 41.91 4.40
3051 3391 0.450184 ATATTCCCGCAACAACGTGC 59.550 50.000 0.00 0.00 41.32 5.34
3052 3392 2.911819 AATATTCCCGCAACAACGTG 57.088 45.000 0.00 0.00 0.00 4.49
3053 3393 3.570559 CAAAATATTCCCGCAACAACGT 58.429 40.909 0.00 0.00 0.00 3.99
3054 3394 2.344142 GCAAAATATTCCCGCAACAACG 59.656 45.455 0.00 0.00 0.00 4.10
3055 3395 3.321497 TGCAAAATATTCCCGCAACAAC 58.679 40.909 4.44 0.00 0.00 3.32
3056 3396 3.667497 TGCAAAATATTCCCGCAACAA 57.333 38.095 4.44 0.00 0.00 2.83
3057 3397 3.667497 TTGCAAAATATTCCCGCAACA 57.333 38.095 12.54 0.00 37.64 3.33
3058 3398 5.105752 TGTATTGCAAAATATTCCCGCAAC 58.894 37.500 16.70 9.80 44.57 4.17
3059 3399 5.330455 TGTATTGCAAAATATTCCCGCAA 57.670 34.783 16.70 16.70 45.70 4.85
3060 3400 4.991153 TGTATTGCAAAATATTCCCGCA 57.009 36.364 1.71 3.09 0.00 5.69
3061 3401 6.701400 AGAAATGTATTGCAAAATATTCCCGC 59.299 34.615 1.71 0.00 0.00 6.13
3062 3402 9.743057 TTAGAAATGTATTGCAAAATATTCCCG 57.257 29.630 1.71 0.00 0.00 5.14
3214 3554 7.095523 AAGATTAACTTCAACATGCAAACATGC 60.096 33.333 5.97 0.00 45.24 4.06
3215 3555 8.301730 AAGATTAACTTCAACATGCAAACATG 57.698 30.769 4.55 4.55 46.05 3.21
3216 3556 8.891671 AAAGATTAACTTCAACATGCAAACAT 57.108 26.923 0.00 0.00 37.93 2.71
3217 3557 8.715191 AAAAGATTAACTTCAACATGCAAACA 57.285 26.923 0.00 0.00 37.93 2.83
3218 3558 8.275632 GGAAAAGATTAACTTCAACATGCAAAC 58.724 33.333 0.00 0.00 37.93 2.93
3219 3559 8.203485 AGGAAAAGATTAACTTCAACATGCAAA 58.797 29.630 0.00 0.00 37.93 3.68
3220 3560 7.725251 AGGAAAAGATTAACTTCAACATGCAA 58.275 30.769 0.00 0.00 37.93 4.08
3221 3561 7.288810 AGGAAAAGATTAACTTCAACATGCA 57.711 32.000 0.00 0.00 37.93 3.96
3222 3562 9.294030 CATAGGAAAAGATTAACTTCAACATGC 57.706 33.333 0.00 0.00 37.93 4.06
3225 3565 9.793259 AGTCATAGGAAAAGATTAACTTCAACA 57.207 29.630 0.00 0.00 37.93 3.33
3235 3575 9.471702 ACATTCAATGAGTCATAGGAAAAGATT 57.528 29.630 18.60 5.09 0.00 2.40
3236 3576 9.471702 AACATTCAATGAGTCATAGGAAAAGAT 57.528 29.630 18.60 10.12 0.00 2.40
3237 3577 8.733458 CAACATTCAATGAGTCATAGGAAAAGA 58.267 33.333 18.60 3.03 0.00 2.52
3238 3578 8.733458 TCAACATTCAATGAGTCATAGGAAAAG 58.267 33.333 18.60 16.45 0.00 2.27
3239 3579 8.634335 TCAACATTCAATGAGTCATAGGAAAA 57.366 30.769 18.60 6.26 0.00 2.29
3240 3580 8.634335 TTCAACATTCAATGAGTCATAGGAAA 57.366 30.769 18.60 7.65 0.00 3.13
3241 3581 7.884877 ACTTCAACATTCAATGAGTCATAGGAA 59.115 33.333 17.56 17.56 0.00 3.36
3242 3582 7.335171 CACTTCAACATTCAATGAGTCATAGGA 59.665 37.037 5.94 4.71 0.00 2.94
3243 3583 7.414873 CCACTTCAACATTCAATGAGTCATAGG 60.415 40.741 5.94 2.18 0.00 2.57
3244 3584 7.414873 CCCACTTCAACATTCAATGAGTCATAG 60.415 40.741 5.94 0.00 0.00 2.23
3245 3585 6.375174 CCCACTTCAACATTCAATGAGTCATA 59.625 38.462 5.94 0.00 0.00 2.15
3246 3586 5.184479 CCCACTTCAACATTCAATGAGTCAT 59.816 40.000 3.79 0.00 0.00 3.06
3247 3587 4.520111 CCCACTTCAACATTCAATGAGTCA 59.480 41.667 3.79 0.00 0.00 3.41
3248 3588 4.520492 ACCCACTTCAACATTCAATGAGTC 59.480 41.667 3.79 0.00 0.00 3.36
3249 3589 4.473444 ACCCACTTCAACATTCAATGAGT 58.527 39.130 3.79 0.00 0.00 3.41
3250 3590 4.763793 AGACCCACTTCAACATTCAATGAG 59.236 41.667 3.79 0.00 0.00 2.90
3251 3591 4.728772 AGACCCACTTCAACATTCAATGA 58.271 39.130 3.79 0.00 0.00 2.57
3252 3592 5.458041 AAGACCCACTTCAACATTCAATG 57.542 39.130 0.00 0.00 32.91 2.82
3253 3593 6.324770 AGAAAAGACCCACTTCAACATTCAAT 59.675 34.615 0.00 0.00 37.93 2.57
3254 3594 5.656416 AGAAAAGACCCACTTCAACATTCAA 59.344 36.000 0.00 0.00 37.93 2.69
3255 3595 5.200483 AGAAAAGACCCACTTCAACATTCA 58.800 37.500 0.00 0.00 37.93 2.57
3256 3596 5.774498 AGAAAAGACCCACTTCAACATTC 57.226 39.130 0.00 0.00 37.93 2.67
3257 3597 7.661040 CATTAGAAAAGACCCACTTCAACATT 58.339 34.615 0.00 0.00 37.93 2.71
3258 3598 6.294731 GCATTAGAAAAGACCCACTTCAACAT 60.295 38.462 0.00 0.00 37.93 2.71
3259 3599 5.009610 GCATTAGAAAAGACCCACTTCAACA 59.990 40.000 0.00 0.00 37.93 3.33
3260 3600 5.009610 TGCATTAGAAAAGACCCACTTCAAC 59.990 40.000 0.00 0.00 37.93 3.18
3261 3601 5.136828 TGCATTAGAAAAGACCCACTTCAA 58.863 37.500 0.00 0.00 37.93 2.69
3262 3602 4.724399 TGCATTAGAAAAGACCCACTTCA 58.276 39.130 0.00 0.00 37.93 3.02
3263 3603 5.183904 ACATGCATTAGAAAAGACCCACTTC 59.816 40.000 0.00 0.00 37.93 3.01
3264 3604 5.079643 ACATGCATTAGAAAAGACCCACTT 58.920 37.500 0.00 0.00 40.98 3.16
3265 3605 4.666512 ACATGCATTAGAAAAGACCCACT 58.333 39.130 0.00 0.00 0.00 4.00
3266 3606 5.163513 CAACATGCATTAGAAAAGACCCAC 58.836 41.667 0.00 0.00 0.00 4.61
3267 3607 4.321899 GCAACATGCATTAGAAAAGACCCA 60.322 41.667 0.00 0.00 44.26 4.51
3268 3608 4.176271 GCAACATGCATTAGAAAAGACCC 58.824 43.478 0.00 0.00 44.26 4.46
3282 3622 1.542915 ACACCTCATCAAGCAACATGC 59.457 47.619 0.00 0.00 45.46 4.06
3283 3623 2.815503 TGACACCTCATCAAGCAACATG 59.184 45.455 0.00 0.00 0.00 3.21
3284 3624 3.144657 TGACACCTCATCAAGCAACAT 57.855 42.857 0.00 0.00 0.00 2.71
3285 3625 2.636647 TGACACCTCATCAAGCAACA 57.363 45.000 0.00 0.00 0.00 3.33
3286 3626 2.415090 GCATGACACCTCATCAAGCAAC 60.415 50.000 0.00 0.00 39.86 4.17
3287 3627 1.814394 GCATGACACCTCATCAAGCAA 59.186 47.619 0.00 0.00 39.86 3.91
3288 3628 1.003928 AGCATGACACCTCATCAAGCA 59.996 47.619 0.00 0.00 41.96 3.91
3289 3629 1.747709 AGCATGACACCTCATCAAGC 58.252 50.000 0.00 0.00 40.29 4.01
3290 3630 2.159421 GCAAGCATGACACCTCATCAAG 60.159 50.000 0.00 0.00 34.65 3.02
3291 3631 1.814394 GCAAGCATGACACCTCATCAA 59.186 47.619 0.00 0.00 34.65 2.57
3292 3632 1.271488 TGCAAGCATGACACCTCATCA 60.271 47.619 0.00 0.00 34.65 3.07
3293 3633 1.456296 TGCAAGCATGACACCTCATC 58.544 50.000 0.00 0.00 34.65 2.92
3294 3634 2.139323 ATGCAAGCATGACACCTCAT 57.861 45.000 6.76 0.00 37.65 2.90
3295 3635 3.656457 ATGCAAGCATGACACCTCA 57.344 47.368 6.76 0.00 35.03 3.86
3304 3644 5.067413 CCTATTTCTCTCAACATGCAAGCAT 59.933 40.000 0.86 0.86 37.08 3.79
3305 3645 4.397103 CCTATTTCTCTCAACATGCAAGCA 59.603 41.667 0.00 0.00 0.00 3.91
3306 3646 4.397417 ACCTATTTCTCTCAACATGCAAGC 59.603 41.667 0.00 0.00 0.00 4.01
3307 3647 6.506500 AACCTATTTCTCTCAACATGCAAG 57.493 37.500 0.00 0.00 0.00 4.01
3308 3648 7.119699 CACTAACCTATTTCTCTCAACATGCAA 59.880 37.037 0.00 0.00 0.00 4.08
3309 3649 6.595326 CACTAACCTATTTCTCTCAACATGCA 59.405 38.462 0.00 0.00 0.00 3.96
3310 3650 6.037610 CCACTAACCTATTTCTCTCAACATGC 59.962 42.308 0.00 0.00 0.00 4.06
3311 3651 6.540189 CCCACTAACCTATTTCTCTCAACATG 59.460 42.308 0.00 0.00 0.00 3.21
3312 3652 6.353082 CCCCACTAACCTATTTCTCTCAACAT 60.353 42.308 0.00 0.00 0.00 2.71
3313 3653 5.045869 CCCCACTAACCTATTTCTCTCAACA 60.046 44.000 0.00 0.00 0.00 3.33
3314 3654 5.429130 CCCCACTAACCTATTTCTCTCAAC 58.571 45.833 0.00 0.00 0.00 3.18
3315 3655 4.473559 CCCCCACTAACCTATTTCTCTCAA 59.526 45.833 0.00 0.00 0.00 3.02
3316 3656 4.037927 CCCCCACTAACCTATTTCTCTCA 58.962 47.826 0.00 0.00 0.00 3.27
3317 3657 3.181453 GCCCCCACTAACCTATTTCTCTC 60.181 52.174 0.00 0.00 0.00 3.20
3318 3658 2.778270 GCCCCCACTAACCTATTTCTCT 59.222 50.000 0.00 0.00 0.00 3.10
3319 3659 2.778270 AGCCCCCACTAACCTATTTCTC 59.222 50.000 0.00 0.00 0.00 2.87
3320 3660 2.859951 AGCCCCCACTAACCTATTTCT 58.140 47.619 0.00 0.00 0.00 2.52
3321 3661 3.496337 GCTAGCCCCCACTAACCTATTTC 60.496 52.174 2.29 0.00 0.00 2.17
3322 3662 2.442126 GCTAGCCCCCACTAACCTATTT 59.558 50.000 2.29 0.00 0.00 1.40
3323 3663 2.055579 GCTAGCCCCCACTAACCTATT 58.944 52.381 2.29 0.00 0.00 1.73
3324 3664 1.223337 AGCTAGCCCCCACTAACCTAT 59.777 52.381 12.13 0.00 0.00 2.57
3325 3665 0.640495 AGCTAGCCCCCACTAACCTA 59.360 55.000 12.13 0.00 0.00 3.08
3326 3666 0.640495 TAGCTAGCCCCCACTAACCT 59.360 55.000 12.13 0.00 0.00 3.50
3327 3667 1.730851 ATAGCTAGCCCCCACTAACC 58.269 55.000 12.13 0.00 0.00 2.85
3328 3668 3.859061 AAATAGCTAGCCCCCACTAAC 57.141 47.619 12.13 0.00 0.00 2.34
3329 3669 4.823107 TCTAAATAGCTAGCCCCCACTAA 58.177 43.478 12.13 0.00 0.00 2.24
3330 3670 4.480777 TCTAAATAGCTAGCCCCCACTA 57.519 45.455 12.13 0.00 0.00 2.74
3331 3671 3.346146 TCTAAATAGCTAGCCCCCACT 57.654 47.619 12.13 0.00 0.00 4.00
3332 3672 5.959583 ATATCTAAATAGCTAGCCCCCAC 57.040 43.478 12.13 0.00 0.00 4.61
3333 3673 6.993408 TCTATATCTAAATAGCTAGCCCCCA 58.007 40.000 12.13 0.00 30.79 4.96
3334 3674 7.785506 TCTTCTATATCTAAATAGCTAGCCCCC 59.214 40.741 12.13 0.00 30.79 5.40
3335 3675 8.770010 TCTTCTATATCTAAATAGCTAGCCCC 57.230 38.462 12.13 0.00 30.79 5.80
3355 3695 9.199982 CTGAAAACAATTTTGCACATATCTTCT 57.800 29.630 0.00 0.00 31.94 2.85
3356 3696 9.195411 TCTGAAAACAATTTTGCACATATCTTC 57.805 29.630 0.00 0.00 31.94 2.87
3357 3697 9.715121 ATCTGAAAACAATTTTGCACATATCTT 57.285 25.926 0.00 0.00 31.94 2.40
3358 3698 9.715121 AATCTGAAAACAATTTTGCACATATCT 57.285 25.926 0.00 0.00 31.94 1.98
3386 3726 8.480853 GCACAAAACGCACATTAAGTATTTAAA 58.519 29.630 0.00 0.00 32.80 1.52
3387 3727 7.149112 CGCACAAAACGCACATTAAGTATTTAA 60.149 33.333 0.00 0.00 33.54 1.52
3388 3728 6.303496 CGCACAAAACGCACATTAAGTATTTA 59.697 34.615 0.00 0.00 0.00 1.40
3389 3729 5.116377 CGCACAAAACGCACATTAAGTATTT 59.884 36.000 0.00 0.00 0.00 1.40
3390 3730 4.615121 CGCACAAAACGCACATTAAGTATT 59.385 37.500 0.00 0.00 0.00 1.89
3391 3731 4.083749 TCGCACAAAACGCACATTAAGTAT 60.084 37.500 0.00 0.00 0.00 2.12
3392 3732 3.247886 TCGCACAAAACGCACATTAAGTA 59.752 39.130 0.00 0.00 0.00 2.24
3393 3733 2.032302 TCGCACAAAACGCACATTAAGT 59.968 40.909 0.00 0.00 0.00 2.24
3394 3734 2.645163 TCGCACAAAACGCACATTAAG 58.355 42.857 0.00 0.00 0.00 1.85
3395 3735 2.757686 TCGCACAAAACGCACATTAA 57.242 40.000 0.00 0.00 0.00 1.40
3396 3736 2.976509 CAATCGCACAAAACGCACATTA 59.023 40.909 0.00 0.00 0.00 1.90
3397 3737 1.786004 CAATCGCACAAAACGCACATT 59.214 42.857 0.00 0.00 0.00 2.71
3398 3738 1.407434 CAATCGCACAAAACGCACAT 58.593 45.000 0.00 0.00 0.00 3.21
3399 3739 0.593518 CCAATCGCACAAAACGCACA 60.594 50.000 0.00 0.00 0.00 4.57
3400 3740 2.132402 CCAATCGCACAAAACGCAC 58.868 52.632 0.00 0.00 0.00 5.34
3401 3741 4.624293 CCAATCGCACAAAACGCA 57.376 50.000 0.00 0.00 0.00 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.