Multiple sequence alignment - TraesCS1A01G215100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G215100 chr1A 100.000 3196 0 0 1 3196 380265121 380261926 0.000000e+00 5903.0
1 TraesCS1A01G215100 chr1D 92.364 2724 77 43 559 3195 302927457 302924778 0.000000e+00 3757.0
2 TraesCS1A01G215100 chr1D 90.761 184 14 3 89 272 206955704 206955524 3.190000e-60 243.0
3 TraesCS1A01G215100 chr1D 88.945 199 15 6 86 279 238940386 238940190 4.120000e-59 239.0
4 TraesCS1A01G215100 chr1B 91.583 2388 76 49 789 3127 409838610 409836299 0.000000e+00 3181.0
5 TraesCS1A01G215100 chr1B 93.776 241 13 1 560 800 409846618 409846380 8.430000e-96 361.0
6 TraesCS1A01G215100 chr1B 91.748 206 12 3 351 555 409846887 409846686 6.750000e-72 281.0
7 TraesCS1A01G215100 chr1B 83.871 248 27 6 586 833 409848110 409847876 1.150000e-54 224.0
8 TraesCS1A01G215100 chr1B 96.825 63 2 0 2048 2110 626422365 626422427 4.360000e-19 106.0
9 TraesCS1A01G215100 chr1B 91.667 72 3 1 254 322 409846958 409846887 2.620000e-16 97.1
10 TraesCS1A01G215100 chr1B 97.368 38 0 1 2005 2042 626422335 626422371 2.660000e-06 63.9
11 TraesCS1A01G215100 chr3D 91.626 609 18 4 1628 2236 231171949 231172524 0.000000e+00 811.0
12 TraesCS1A01G215100 chr3D 89.555 584 22 17 910 1484 231173062 231172509 0.000000e+00 704.0
13 TraesCS1A01G215100 chr3D 96.000 225 9 0 1460 1684 231171734 231171958 1.810000e-97 366.0
14 TraesCS1A01G215100 chr7D 89.568 556 37 7 1090 1630 501383156 501383705 0.000000e+00 686.0
15 TraesCS1A01G215100 chr7D 89.088 559 34 13 1090 1633 501384400 501384946 0.000000e+00 669.0
16 TraesCS1A01G215100 chr5B 89.507 467 30 11 2595 3059 169509006 169509455 9.940000e-160 573.0
17 TraesCS1A01G215100 chr5D 94.410 161 9 0 93 253 25039980 25040140 6.850000e-62 248.0
18 TraesCS1A01G215100 chr5D 93.413 167 11 0 87 253 517310654 517310488 6.850000e-62 248.0
19 TraesCS1A01G215100 chr3B 93.452 168 10 1 86 253 673063295 673063461 6.850000e-62 248.0
20 TraesCS1A01G215100 chr3B 95.283 106 4 1 2005 2110 23381753 23381649 1.970000e-37 167.0
21 TraesCS1A01G215100 chr4A 92.941 170 11 1 85 253 559491500 559491669 2.460000e-61 246.0
22 TraesCS1A01G215100 chr2D 92.899 169 12 0 92 260 516708311 516708479 2.460000e-61 246.0
23 TraesCS1A01G215100 chr6A 91.573 178 13 1 84 259 222571417 222571240 8.860000e-61 244.0
24 TraesCS1A01G215100 chr6A 93.506 77 4 1 3051 3127 52023144 52023069 2.610000e-21 113.0
25 TraesCS1A01G215100 chr5A 89.785 186 15 3 89 271 618189675 618189859 5.330000e-58 235.0
26 TraesCS1A01G215100 chr7A 89.349 169 17 1 1440 1608 562904040 562904207 8.980000e-51 211.0
27 TraesCS1A01G215100 chr7A 90.667 75 6 1 3051 3125 43352842 43352769 7.300000e-17 99.0
28 TraesCS1A01G215100 chr7A 90.667 75 6 1 3051 3125 43386352 43386279 7.300000e-17 99.0
29 TraesCS1A01G215100 chr7B 94.118 102 5 1 2005 2106 643391571 643391671 1.540000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G215100 chr1A 380261926 380265121 3195 True 5903.000 5903 100.0000 1 3196 1 chr1A.!!$R1 3195
1 TraesCS1A01G215100 chr1D 302924778 302927457 2679 True 3757.000 3757 92.3640 559 3195 1 chr1D.!!$R3 2636
2 TraesCS1A01G215100 chr1B 409836299 409838610 2311 True 3181.000 3181 91.5830 789 3127 1 chr1B.!!$R1 2338
3 TraesCS1A01G215100 chr1B 409846380 409848110 1730 True 240.775 361 90.2655 254 833 4 chr1B.!!$R2 579
4 TraesCS1A01G215100 chr3D 231172509 231173062 553 True 704.000 704 89.5550 910 1484 1 chr3D.!!$R1 574
5 TraesCS1A01G215100 chr3D 231171734 231172524 790 False 588.500 811 93.8130 1460 2236 2 chr3D.!!$F1 776
6 TraesCS1A01G215100 chr7D 501383156 501384946 1790 False 677.500 686 89.3280 1090 1633 2 chr7D.!!$F1 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
39 40 0.109532 TTCAAGTTCCATCGGGTGCA 59.890 50.0 0.0 0.0 34.93 4.57 F
356 1259 0.621082 TCATGGTTTATGGGACCGCA 59.379 50.0 0.0 0.0 40.13 5.69 F
2073 4362 0.846427 AGTGGTGGTGGGACATGGAT 60.846 55.0 0.0 0.0 44.52 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1015 1986 0.399806 ATCCTCTCTCCCCCTTGCTC 60.400 60.000 0.00 0.0 0.00 4.26 R
2173 4462 1.000060 TGGAACGCGCTGTTTACTAGT 60.000 47.619 16.45 0.0 42.09 2.57 R
3118 5478 1.001503 AGGTGCTGAGGAGGAGGAG 59.998 63.158 0.00 0.0 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 8.696410 TTATCTTTGTGTTTGTTTCAAGTTCC 57.304 30.769 0.00 0.00 0.00 3.62
30 31 6.090483 TCTTTGTGTTTGTTTCAAGTTCCA 57.910 33.333 0.00 0.00 0.00 3.53
31 32 6.696411 TCTTTGTGTTTGTTTCAAGTTCCAT 58.304 32.000 0.00 0.00 0.00 3.41
32 33 6.811170 TCTTTGTGTTTGTTTCAAGTTCCATC 59.189 34.615 0.00 0.00 0.00 3.51
33 34 4.667262 TGTGTTTGTTTCAAGTTCCATCG 58.333 39.130 0.00 0.00 0.00 3.84
34 35 4.041723 GTGTTTGTTTCAAGTTCCATCGG 58.958 43.478 0.00 0.00 0.00 4.18
35 36 3.067461 TGTTTGTTTCAAGTTCCATCGGG 59.933 43.478 0.00 0.00 0.00 5.14
36 37 2.649531 TGTTTCAAGTTCCATCGGGT 57.350 45.000 0.00 0.00 34.93 5.28
37 38 2.226330 TGTTTCAAGTTCCATCGGGTG 58.774 47.619 0.00 0.00 34.93 4.61
38 39 1.068541 GTTTCAAGTTCCATCGGGTGC 60.069 52.381 0.00 0.00 34.93 5.01
39 40 0.109532 TTCAAGTTCCATCGGGTGCA 59.890 50.000 0.00 0.00 34.93 4.57
41 42 1.557371 TCAAGTTCCATCGGGTGCATA 59.443 47.619 0.00 0.00 34.93 3.14
44 45 3.297134 AGTTCCATCGGGTGCATATTT 57.703 42.857 0.00 0.00 34.93 1.40
45 46 2.951642 AGTTCCATCGGGTGCATATTTG 59.048 45.455 0.00 0.00 34.93 2.32
47 48 2.296792 TCCATCGGGTGCATATTTGTG 58.703 47.619 0.00 0.00 34.93 3.33
48 49 1.269206 CCATCGGGTGCATATTTGTGC 60.269 52.381 0.00 0.00 45.25 4.57
60 61 6.401955 GCATATTTGTGCGTTGGTAATTTT 57.598 33.333 0.00 0.00 35.10 1.82
62 63 7.387945 GCATATTTGTGCGTTGGTAATTTTAC 58.612 34.615 0.00 0.00 35.10 2.01
63 64 7.062371 GCATATTTGTGCGTTGGTAATTTTACA 59.938 33.333 3.12 0.00 35.10 2.41
64 65 9.081997 CATATTTGTGCGTTGGTAATTTTACAT 57.918 29.630 3.12 0.00 35.37 2.29
67 68 6.994868 TGTGCGTTGGTAATTTTACATTTC 57.005 33.333 3.12 0.00 35.37 2.17
69 70 6.978659 TGTGCGTTGGTAATTTTACATTTCAA 59.021 30.769 3.12 0.00 35.37 2.69
70 71 7.491372 TGTGCGTTGGTAATTTTACATTTCAAA 59.509 29.630 3.12 0.00 35.37 2.69
71 72 8.328864 GTGCGTTGGTAATTTTACATTTCAAAA 58.671 29.630 3.12 0.00 35.37 2.44
73 74 9.871299 GCGTTGGTAATTTTACATTTCAAAAAT 57.129 25.926 3.12 0.00 36.98 1.82
81 82 9.541143 AATTTTACATTTCAAAAATGACGGACT 57.459 25.926 16.92 0.00 35.89 3.85
82 83 8.934507 TTTTACATTTCAAAAATGACGGACTT 57.065 26.923 16.92 0.00 0.00 3.01
85 86 7.033530 ACATTTCAAAAATGACGGACTTACA 57.966 32.000 16.92 0.00 0.00 2.41
88 89 9.619316 CATTTCAAAAATGACGGACTTACAATA 57.381 29.630 6.57 0.00 0.00 1.90
92 93 9.661563 TCAAAAATGACGGACTTACAATATACT 57.338 29.630 0.00 0.00 0.00 2.12
97 98 7.502120 TGACGGACTTACAATATACTACTCC 57.498 40.000 0.00 0.00 0.00 3.85
100 101 6.714356 ACGGACTTACAATATACTACTCCCTC 59.286 42.308 0.00 0.00 0.00 4.30
101 102 6.150809 CGGACTTACAATATACTACTCCCTCC 59.849 46.154 0.00 0.00 0.00 4.30
102 103 6.150809 GGACTTACAATATACTACTCCCTCCG 59.849 46.154 0.00 0.00 0.00 4.63
103 104 6.608922 ACTTACAATATACTACTCCCTCCGT 58.391 40.000 0.00 0.00 0.00 4.69
104 105 7.065504 ACTTACAATATACTACTCCCTCCGTT 58.934 38.462 0.00 0.00 0.00 4.44
105 106 7.562821 ACTTACAATATACTACTCCCTCCGTTT 59.437 37.037 0.00 0.00 0.00 3.60
106 107 6.402456 ACAATATACTACTCCCTCCGTTTC 57.598 41.667 0.00 0.00 0.00 2.78
108 109 6.381994 ACAATATACTACTCCCTCCGTTTCAA 59.618 38.462 0.00 0.00 0.00 2.69
109 110 7.093201 ACAATATACTACTCCCTCCGTTTCAAA 60.093 37.037 0.00 0.00 0.00 2.69
110 111 5.750352 ATACTACTCCCTCCGTTTCAAAA 57.250 39.130 0.00 0.00 0.00 2.44
113 114 6.309389 ACTACTCCCTCCGTTTCAAAATAT 57.691 37.500 0.00 0.00 0.00 1.28
114 115 6.718294 ACTACTCCCTCCGTTTCAAAATATT 58.282 36.000 0.00 0.00 0.00 1.28
115 116 7.173032 ACTACTCCCTCCGTTTCAAAATATTT 58.827 34.615 0.00 0.00 0.00 1.40
116 117 6.267496 ACTCCCTCCGTTTCAAAATATTTG 57.733 37.500 0.39 0.00 0.00 2.32
117 118 5.773176 ACTCCCTCCGTTTCAAAATATTTGT 59.227 36.000 0.39 0.00 0.00 2.83
118 119 6.072119 ACTCCCTCCGTTTCAAAATATTTGTC 60.072 38.462 0.39 0.00 0.00 3.18
119 120 6.007703 TCCCTCCGTTTCAAAATATTTGTCT 58.992 36.000 0.39 0.00 0.00 3.41
121 122 7.014808 TCCCTCCGTTTCAAAATATTTGTCTTT 59.985 33.333 0.39 0.00 0.00 2.52
123 124 9.855021 CCTCCGTTTCAAAATATTTGTCTTTAT 57.145 29.630 0.39 0.00 0.00 1.40
165 166 9.500785 TGACTACATATGAAACAAAATGAGTGA 57.499 29.630 10.38 0.00 0.00 3.41
215 216 8.974060 ATACATTCGTATTTGGTAGTCCATTT 57.026 30.769 0.00 0.00 35.32 2.32
222 223 9.675464 TCGTATTTGGTAGTCCATTTAAAATCT 57.325 29.630 0.00 0.00 43.91 2.40
251 252 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
252 253 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
253 254 5.191124 AGACAAATATTTAGGAACGGAGGGT 59.809 40.000 0.00 0.00 0.00 4.34
254 255 6.384886 AGACAAATATTTAGGAACGGAGGGTA 59.615 38.462 0.00 0.00 0.00 3.69
255 256 7.072076 AGACAAATATTTAGGAACGGAGGGTAT 59.928 37.037 0.00 0.00 0.00 2.73
256 257 8.266363 ACAAATATTTAGGAACGGAGGGTATA 57.734 34.615 0.00 0.00 0.00 1.47
281 1181 8.761575 ATTACATGCAATTTTGGTGTTTAGAG 57.238 30.769 0.00 0.00 0.00 2.43
326 1229 3.843632 TGCAAACTCGCATGTTGTC 57.156 47.368 0.00 0.00 36.86 3.18
327 1230 1.308047 TGCAAACTCGCATGTTGTCT 58.692 45.000 0.00 0.00 36.86 3.41
328 1231 1.675483 TGCAAACTCGCATGTTGTCTT 59.325 42.857 0.00 0.00 36.86 3.01
329 1232 2.875317 TGCAAACTCGCATGTTGTCTTA 59.125 40.909 0.00 0.00 36.86 2.10
331 1234 4.201960 TGCAAACTCGCATGTTGTCTTAAA 60.202 37.500 0.00 0.00 36.86 1.52
332 1235 4.917415 GCAAACTCGCATGTTGTCTTAAAT 59.083 37.500 0.00 0.00 0.00 1.40
333 1236 5.402270 GCAAACTCGCATGTTGTCTTAAATT 59.598 36.000 0.00 0.00 0.00 1.82
334 1237 6.074356 GCAAACTCGCATGTTGTCTTAAATTT 60.074 34.615 0.00 0.00 0.00 1.82
335 1238 7.493313 CAAACTCGCATGTTGTCTTAAATTTC 58.507 34.615 0.00 0.00 0.00 2.17
336 1239 6.560253 ACTCGCATGTTGTCTTAAATTTCT 57.440 33.333 0.00 0.00 0.00 2.52
337 1240 6.970484 ACTCGCATGTTGTCTTAAATTTCTT 58.030 32.000 0.00 0.00 0.00 2.52
338 1241 7.078228 ACTCGCATGTTGTCTTAAATTTCTTC 58.922 34.615 0.00 0.00 0.00 2.87
339 1242 6.964908 TCGCATGTTGTCTTAAATTTCTTCA 58.035 32.000 0.00 0.00 0.00 3.02
340 1243 7.592938 TCGCATGTTGTCTTAAATTTCTTCAT 58.407 30.769 0.00 0.00 0.00 2.57
341 1244 7.538334 TCGCATGTTGTCTTAAATTTCTTCATG 59.462 33.333 0.00 3.59 34.19 3.07
342 1245 7.201376 CGCATGTTGTCTTAAATTTCTTCATGG 60.201 37.037 0.00 0.00 32.49 3.66
343 1246 7.599998 GCATGTTGTCTTAAATTTCTTCATGGT 59.400 33.333 0.00 0.00 32.49 3.55
344 1247 9.480053 CATGTTGTCTTAAATTTCTTCATGGTT 57.520 29.630 0.00 0.00 0.00 3.67
350 1253 9.586435 GTCTTAAATTTCTTCATGGTTTATGGG 57.414 33.333 0.00 0.00 37.39 4.00
351 1254 9.540538 TCTTAAATTTCTTCATGGTTTATGGGA 57.459 29.630 0.00 0.00 37.39 4.37
352 1255 9.586435 CTTAAATTTCTTCATGGTTTATGGGAC 57.414 33.333 0.00 0.00 37.39 4.46
353 1256 6.544928 AATTTCTTCATGGTTTATGGGACC 57.455 37.500 0.00 0.00 37.39 4.46
354 1257 3.275617 TCTTCATGGTTTATGGGACCG 57.724 47.619 0.00 0.00 40.13 4.79
355 1258 1.676006 CTTCATGGTTTATGGGACCGC 59.324 52.381 0.00 0.00 40.13 5.68
356 1259 0.621082 TCATGGTTTATGGGACCGCA 59.379 50.000 0.00 0.00 40.13 5.69
357 1260 1.004862 TCATGGTTTATGGGACCGCAA 59.995 47.619 0.00 0.00 40.13 4.85
358 1261 2.031120 CATGGTTTATGGGACCGCAAT 58.969 47.619 0.00 0.00 40.13 3.56
359 1262 1.468985 TGGTTTATGGGACCGCAATG 58.531 50.000 0.00 0.00 40.13 2.82
365 1268 1.635817 ATGGGACCGCAATGGCTAGT 61.636 55.000 0.00 0.00 43.94 2.57
366 1269 1.819632 GGGACCGCAATGGCTAGTG 60.820 63.158 0.00 0.00 43.94 2.74
375 1278 2.099756 GCAATGGCTAGTGAATGTTCCC 59.900 50.000 0.20 0.00 36.96 3.97
400 1303 2.364311 GCATGGTGTTTGCGAACGC 61.364 57.895 20.15 20.15 43.79 4.84
414 1317 3.002862 TGCGAACGCTTTTTATGACAAGT 59.997 39.130 19.32 0.00 42.51 3.16
422 1325 7.254852 ACGCTTTTTATGACAAGTTCTTCAAA 58.745 30.769 0.00 0.00 0.00 2.69
428 1331 4.335082 TGACAAGTTCTTCAAACACACG 57.665 40.909 0.00 0.00 0.00 4.49
429 1332 3.126171 TGACAAGTTCTTCAAACACACGG 59.874 43.478 0.00 0.00 0.00 4.94
496 1399 1.028130 TGCTGTGAAATTTGCCGTGA 58.972 45.000 0.00 0.00 0.00 4.35
513 1416 4.032104 GCCGTGATTGATTGAAGAAATTGC 59.968 41.667 0.00 0.00 0.00 3.56
517 1420 6.237728 CGTGATTGATTGAAGAAATTGCCATG 60.238 38.462 0.00 0.00 0.00 3.66
518 1421 6.592607 GTGATTGATTGAAGAAATTGCCATGT 59.407 34.615 0.00 0.00 0.00 3.21
519 1422 7.118680 GTGATTGATTGAAGAAATTGCCATGTT 59.881 33.333 0.00 0.00 0.00 2.71
555 1459 2.993545 TCCATGAAAAACGTTCGCAAG 58.006 42.857 0.00 0.00 0.00 4.01
570 1537 2.245096 CGCAAGAAGCCAAGATTTTCG 58.755 47.619 0.00 0.00 41.38 3.46
588 1555 3.463533 TCGTAATGCAATGTGGAAACG 57.536 42.857 0.00 0.00 34.31 3.60
629 1596 4.261031 CCCTACAAACGACTCCAACTTTTG 60.261 45.833 0.00 0.00 34.33 2.44
757 1724 4.279671 AGCAGTAGAGTAGTGTATGATGCC 59.720 45.833 0.00 0.00 0.00 4.40
803 1774 9.426534 AAAGATTAATTAGAATGGGGGAAGAAG 57.573 33.333 0.00 0.00 0.00 2.85
804 1775 8.350180 AGATTAATTAGAATGGGGGAAGAAGA 57.650 34.615 0.00 0.00 0.00 2.87
805 1776 8.791749 AGATTAATTAGAATGGGGGAAGAAGAA 58.208 33.333 0.00 0.00 0.00 2.52
836 1807 4.812091 CCAATTGGCCACATTATGATTGTG 59.188 41.667 12.53 9.42 43.25 3.33
876 1847 3.248602 GGCACAGGTATAAATGAGAAGCG 59.751 47.826 0.00 0.00 0.00 4.68
1022 1993 3.576004 GCAGACAGCAGAGCAAGG 58.424 61.111 0.00 0.00 44.79 3.61
1023 1994 2.039405 GCAGACAGCAGAGCAAGGG 61.039 63.158 0.00 0.00 44.79 3.95
1044 2015 2.041216 GGGAGAGAGGATAGAGGGAGAC 59.959 59.091 0.00 0.00 0.00 3.36
1060 2031 2.287308 GGAGACTGATCGATGTCTTCCG 60.287 54.545 16.86 0.00 42.79 4.30
1137 2117 4.709840 CCACACTTGGCTGAGGAG 57.290 61.111 0.00 0.00 35.56 3.69
1146 2129 3.160748 GCTGAGGAGGGAGGAGGC 61.161 72.222 0.00 0.00 0.00 4.70
2073 4362 0.846427 AGTGGTGGTGGGACATGGAT 60.846 55.000 0.00 0.00 44.52 3.41
2172 4461 3.410508 GGGAGCATACTAGCTACGTACT 58.589 50.000 0.00 0.00 46.75 2.73
2173 4462 4.573900 GGGAGCATACTAGCTACGTACTA 58.426 47.826 0.00 0.00 46.75 1.82
2268 4569 1.707989 TGTAATCTCCAAACTGCCCCA 59.292 47.619 0.00 0.00 0.00 4.96
2391 4692 1.743394 GGATTACAAAACTGGCTCCGG 59.257 52.381 0.00 0.00 0.00 5.14
2427 4728 1.098129 GGGAAGGCTGAGGAATTCGC 61.098 60.000 0.00 0.00 0.00 4.70
2456 4782 0.511653 GACTTTGAGGCGAACCGAAC 59.488 55.000 0.00 0.00 42.76 3.95
2495 4821 2.376518 TCCACATCTTCCCAAGCTTTCT 59.623 45.455 0.00 0.00 0.00 2.52
2514 4859 3.794717 TCTGCTCCTACTCTAGTACGTG 58.205 50.000 0.00 0.00 0.00 4.49
2542 4887 6.725246 CGTTTTGATTTGAGTTGTACTCCTT 58.275 36.000 4.52 0.00 44.44 3.36
2636 4990 2.090400 TTGCTCTCTGTCTCATGTGC 57.910 50.000 0.00 0.00 0.00 4.57
2639 4993 1.138636 CTCTCTGTCTCATGTGCGCG 61.139 60.000 0.00 0.00 0.00 6.86
2675 5029 1.226491 GCGTCGTAGCGTGGTACAT 60.226 57.895 9.59 0.00 44.52 2.29
2698 5052 1.183549 ACTAGTAAGGGACAGCGGTG 58.816 55.000 14.13 14.13 0.00 4.94
2812 5166 2.043752 CCTGGTCCATGCCATGCA 60.044 61.111 0.00 0.00 44.86 3.96
2813 5167 2.125326 CCTGGTCCATGCCATGCAG 61.125 63.158 0.00 1.60 43.65 4.41
2814 5168 2.756691 TGGTCCATGCCATGCAGC 60.757 61.111 0.00 0.00 43.65 5.25
2988 5343 6.475076 TCAAAGTGATCATTTTTGTTGAACCG 59.525 34.615 23.61 9.26 34.35 4.44
3037 5397 1.423541 TGCATAAAGTGAGTGGTGGGT 59.576 47.619 0.00 0.00 0.00 4.51
3038 5398 2.640332 TGCATAAAGTGAGTGGTGGGTA 59.360 45.455 0.00 0.00 0.00 3.69
3039 5399 3.007635 GCATAAAGTGAGTGGTGGGTAC 58.992 50.000 0.00 0.00 0.00 3.34
3118 5478 0.884514 GCCTGCCTTGTCTTTCTTCC 59.115 55.000 0.00 0.00 0.00 3.46
3156 5516 3.118629 CCTCATCCATACCATACCATCCG 60.119 52.174 0.00 0.00 0.00 4.18
3195 5555 1.069022 GCGATTTGCTTGCACTGAAGA 60.069 47.619 0.00 0.00 41.73 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.145865 GGAACTTGAAACAAACACAAAGATAAA 57.854 29.630 0.00 0.00 0.00 1.40
4 5 8.307483 TGGAACTTGAAACAAACACAAAGATAA 58.693 29.630 0.00 0.00 0.00 1.75
5 6 7.831753 TGGAACTTGAAACAAACACAAAGATA 58.168 30.769 0.00 0.00 0.00 1.98
6 7 6.696411 TGGAACTTGAAACAAACACAAAGAT 58.304 32.000 0.00 0.00 0.00 2.40
7 8 6.090483 TGGAACTTGAAACAAACACAAAGA 57.910 33.333 0.00 0.00 0.00 2.52
8 9 6.237542 CGATGGAACTTGAAACAAACACAAAG 60.238 38.462 0.00 0.00 0.00 2.77
9 10 5.574830 CGATGGAACTTGAAACAAACACAAA 59.425 36.000 0.00 0.00 0.00 2.83
10 11 5.098893 CGATGGAACTTGAAACAAACACAA 58.901 37.500 0.00 0.00 0.00 3.33
11 12 4.439426 CCGATGGAACTTGAAACAAACACA 60.439 41.667 0.00 0.00 0.00 3.72
12 13 4.041723 CCGATGGAACTTGAAACAAACAC 58.958 43.478 0.00 0.00 0.00 3.32
13 14 3.067461 CCCGATGGAACTTGAAACAAACA 59.933 43.478 0.00 0.00 0.00 2.83
14 15 3.067601 ACCCGATGGAACTTGAAACAAAC 59.932 43.478 0.00 0.00 34.81 2.93
17 18 2.226330 CACCCGATGGAACTTGAAACA 58.774 47.619 0.00 0.00 34.81 2.83
18 19 1.068541 GCACCCGATGGAACTTGAAAC 60.069 52.381 0.00 0.00 34.81 2.78
21 22 0.327924 ATGCACCCGATGGAACTTGA 59.672 50.000 0.00 0.00 34.81 3.02
23 24 3.297134 AATATGCACCCGATGGAACTT 57.703 42.857 0.00 0.00 34.81 2.66
24 25 2.951642 CAAATATGCACCCGATGGAACT 59.048 45.455 0.00 0.00 34.81 3.01
25 26 2.687935 ACAAATATGCACCCGATGGAAC 59.312 45.455 0.00 0.00 34.81 3.62
26 27 2.687425 CACAAATATGCACCCGATGGAA 59.313 45.455 0.00 0.00 34.81 3.53
27 28 2.296792 CACAAATATGCACCCGATGGA 58.703 47.619 0.00 0.00 34.81 3.41
28 29 1.269206 GCACAAATATGCACCCGATGG 60.269 52.381 0.00 0.00 45.39 3.51
29 30 1.597690 CGCACAAATATGCACCCGATG 60.598 52.381 0.00 0.00 46.47 3.84
30 31 0.662619 CGCACAAATATGCACCCGAT 59.337 50.000 0.00 0.00 46.47 4.18
31 32 0.675208 ACGCACAAATATGCACCCGA 60.675 50.000 0.00 0.00 46.47 5.14
32 33 0.170116 AACGCACAAATATGCACCCG 59.830 50.000 0.00 0.00 46.47 5.28
33 34 1.627879 CAACGCACAAATATGCACCC 58.372 50.000 0.00 0.00 46.47 4.61
34 35 1.067915 ACCAACGCACAAATATGCACC 60.068 47.619 0.00 0.00 46.47 5.01
35 36 2.346099 ACCAACGCACAAATATGCAC 57.654 45.000 0.00 0.00 46.47 4.57
36 37 4.710423 ATTACCAACGCACAAATATGCA 57.290 36.364 0.00 0.00 46.47 3.96
37 38 6.401955 AAAATTACCAACGCACAAATATGC 57.598 33.333 0.00 0.00 42.48 3.14
38 39 8.454293 TGTAAAATTACCAACGCACAAATATG 57.546 30.769 1.13 0.00 32.72 1.78
39 40 9.646427 AATGTAAAATTACCAACGCACAAATAT 57.354 25.926 1.13 0.00 32.72 1.28
41 42 7.954788 AATGTAAAATTACCAACGCACAAAT 57.045 28.000 1.13 0.00 32.72 2.32
44 45 6.504398 TGAAATGTAAAATTACCAACGCACA 58.496 32.000 1.13 0.00 32.72 4.57
45 46 6.994868 TGAAATGTAAAATTACCAACGCAC 57.005 33.333 1.13 0.00 32.72 5.34
47 48 9.871299 ATTTTTGAAATGTAAAATTACCAACGC 57.129 25.926 1.13 0.00 31.72 4.84
56 57 9.541143 AAGTCCGTCATTTTTGAAATGTAAAAT 57.459 25.926 11.78 0.00 35.05 1.82
57 58 8.934507 AAGTCCGTCATTTTTGAAATGTAAAA 57.065 26.923 11.78 0.00 0.00 1.52
58 59 9.453325 GTAAGTCCGTCATTTTTGAAATGTAAA 57.547 29.630 11.78 0.00 0.00 2.01
59 60 8.622157 TGTAAGTCCGTCATTTTTGAAATGTAA 58.378 29.630 11.78 0.00 0.00 2.41
60 61 8.155821 TGTAAGTCCGTCATTTTTGAAATGTA 57.844 30.769 11.78 0.00 0.00 2.29
62 63 7.922505 TTGTAAGTCCGTCATTTTTGAAATG 57.077 32.000 6.99 6.99 0.00 2.32
70 71 9.962783 GAGTAGTATATTGTAAGTCCGTCATTT 57.037 33.333 0.00 0.00 0.00 2.32
71 72 8.574737 GGAGTAGTATATTGTAAGTCCGTCATT 58.425 37.037 0.00 0.00 0.00 2.57
73 74 6.488006 GGGAGTAGTATATTGTAAGTCCGTCA 59.512 42.308 0.00 0.00 31.56 4.35
75 76 6.608922 AGGGAGTAGTATATTGTAAGTCCGT 58.391 40.000 0.00 0.00 31.56 4.69
76 77 6.150809 GGAGGGAGTAGTATATTGTAAGTCCG 59.849 46.154 0.00 0.00 31.56 4.79
77 78 6.150809 CGGAGGGAGTAGTATATTGTAAGTCC 59.849 46.154 0.00 0.00 0.00 3.85
78 79 6.714356 ACGGAGGGAGTAGTATATTGTAAGTC 59.286 42.308 0.00 0.00 0.00 3.01
81 82 7.560991 TGAAACGGAGGGAGTAGTATATTGTAA 59.439 37.037 0.00 0.00 0.00 2.41
82 83 7.062322 TGAAACGGAGGGAGTAGTATATTGTA 58.938 38.462 0.00 0.00 0.00 2.41
85 86 7.427989 TTTGAAACGGAGGGAGTAGTATATT 57.572 36.000 0.00 0.00 0.00 1.28
88 89 5.750352 TTTTGAAACGGAGGGAGTAGTAT 57.250 39.130 0.00 0.00 0.00 2.12
89 90 5.750352 ATTTTGAAACGGAGGGAGTAGTA 57.250 39.130 0.00 0.00 0.00 1.82
91 92 7.120726 ACAAATATTTTGAAACGGAGGGAGTAG 59.879 37.037 6.96 0.00 0.00 2.57
92 93 6.943718 ACAAATATTTTGAAACGGAGGGAGTA 59.056 34.615 6.96 0.00 0.00 2.59
93 94 5.773176 ACAAATATTTTGAAACGGAGGGAGT 59.227 36.000 6.96 0.00 0.00 3.85
95 96 6.007703 AGACAAATATTTTGAAACGGAGGGA 58.992 36.000 6.96 0.00 0.00 4.20
97 98 9.855021 ATAAAGACAAATATTTTGAAACGGAGG 57.145 29.630 6.96 0.00 0.00 4.30
139 140 9.500785 TCACTCATTTTGTTTCATATGTAGTCA 57.499 29.630 1.90 0.00 0.00 3.41
149 150 8.450578 AGTGTAGATTCACTCATTTTGTTTCA 57.549 30.769 0.00 0.00 44.07 2.69
150 151 9.736023 AAAGTGTAGATTCACTCATTTTGTTTC 57.264 29.630 0.00 0.00 46.25 2.78
226 227 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
228 229 6.120220 CCCTCCGTTCCTAAATATTTGTCTT 58.880 40.000 11.05 0.00 0.00 3.01
229 230 5.191124 ACCCTCCGTTCCTAAATATTTGTCT 59.809 40.000 11.05 0.00 0.00 3.41
230 231 5.434408 ACCCTCCGTTCCTAAATATTTGTC 58.566 41.667 11.05 0.00 0.00 3.18
231 232 5.446260 ACCCTCCGTTCCTAAATATTTGT 57.554 39.130 11.05 0.00 0.00 2.83
236 237 8.954834 TGTAATATACCCTCCGTTCCTAAATA 57.045 34.615 0.00 0.00 0.00 1.40
237 238 7.860649 TGTAATATACCCTCCGTTCCTAAAT 57.139 36.000 0.00 0.00 0.00 1.40
238 239 7.673180 CATGTAATATACCCTCCGTTCCTAAA 58.327 38.462 0.00 0.00 0.00 1.85
241 242 4.020485 GCATGTAATATACCCTCCGTTCCT 60.020 45.833 0.00 0.00 0.00 3.36
243 244 4.890088 TGCATGTAATATACCCTCCGTTC 58.110 43.478 0.00 0.00 0.00 3.95
244 245 4.967084 TGCATGTAATATACCCTCCGTT 57.033 40.909 0.00 0.00 0.00 4.44
246 247 6.817765 AAATTGCATGTAATATACCCTCCG 57.182 37.500 9.58 0.00 0.00 4.63
247 248 7.015195 ACCAAAATTGCATGTAATATACCCTCC 59.985 37.037 9.58 0.00 0.00 4.30
250 251 7.496747 ACACCAAAATTGCATGTAATATACCC 58.503 34.615 9.58 0.00 0.00 3.69
251 252 8.940768 AACACCAAAATTGCATGTAATATACC 57.059 30.769 9.58 0.00 0.00 2.73
255 256 9.853555 CTCTAAACACCAAAATTGCATGTAATA 57.146 29.630 9.58 0.00 0.00 0.98
256 257 8.584157 TCTCTAAACACCAAAATTGCATGTAAT 58.416 29.630 2.84 2.84 0.00 1.89
314 1217 7.077605 TGAAGAAATTTAAGACAACATGCGAG 58.922 34.615 0.00 0.00 0.00 5.03
324 1227 9.586435 CCCATAAACCATGAAGAAATTTAAGAC 57.414 33.333 0.00 0.00 36.69 3.01
325 1228 9.540538 TCCCATAAACCATGAAGAAATTTAAGA 57.459 29.630 0.00 0.00 36.69 2.10
326 1229 9.586435 GTCCCATAAACCATGAAGAAATTTAAG 57.414 33.333 0.00 0.00 36.69 1.85
327 1230 8.536175 GGTCCCATAAACCATGAAGAAATTTAA 58.464 33.333 0.00 0.00 36.69 1.52
328 1231 7.147983 CGGTCCCATAAACCATGAAGAAATTTA 60.148 37.037 0.00 0.00 36.69 1.40
329 1232 6.350949 CGGTCCCATAAACCATGAAGAAATTT 60.351 38.462 0.00 0.00 36.69 1.82
331 1234 4.644685 CGGTCCCATAAACCATGAAGAAAT 59.355 41.667 0.00 0.00 36.69 2.17
332 1235 4.013728 CGGTCCCATAAACCATGAAGAAA 58.986 43.478 0.00 0.00 36.69 2.52
333 1236 3.616219 CGGTCCCATAAACCATGAAGAA 58.384 45.455 0.00 0.00 36.69 2.52
334 1237 2.682563 GCGGTCCCATAAACCATGAAGA 60.683 50.000 0.00 0.00 36.69 2.87
335 1238 1.676006 GCGGTCCCATAAACCATGAAG 59.324 52.381 0.00 0.00 36.69 3.02
336 1239 1.004862 TGCGGTCCCATAAACCATGAA 59.995 47.619 0.00 0.00 36.69 2.57
337 1240 0.621082 TGCGGTCCCATAAACCATGA 59.379 50.000 0.00 0.00 36.69 3.07
338 1241 1.468985 TTGCGGTCCCATAAACCATG 58.531 50.000 0.00 0.00 36.53 3.66
339 1242 2.031120 CATTGCGGTCCCATAAACCAT 58.969 47.619 0.00 0.00 36.53 3.55
340 1243 1.468985 CATTGCGGTCCCATAAACCA 58.531 50.000 0.00 0.00 36.53 3.67
341 1244 0.744281 CCATTGCGGTCCCATAAACC 59.256 55.000 0.00 0.00 0.00 3.27
342 1245 0.102300 GCCATTGCGGTCCCATAAAC 59.898 55.000 0.00 0.00 36.97 2.01
343 1246 0.033601 AGCCATTGCGGTCCCATAAA 60.034 50.000 0.00 0.00 44.33 1.40
344 1247 0.840617 TAGCCATTGCGGTCCCATAA 59.159 50.000 0.00 0.00 44.33 1.90
345 1248 0.396435 CTAGCCATTGCGGTCCCATA 59.604 55.000 0.00 0.00 44.33 2.74
346 1249 1.149174 CTAGCCATTGCGGTCCCAT 59.851 57.895 0.00 0.00 44.33 4.00
347 1250 2.297895 ACTAGCCATTGCGGTCCCA 61.298 57.895 0.00 0.00 44.33 4.37
348 1251 1.819632 CACTAGCCATTGCGGTCCC 60.820 63.158 0.00 0.00 44.33 4.46
349 1252 0.392461 TTCACTAGCCATTGCGGTCC 60.392 55.000 0.00 0.00 44.33 4.46
350 1253 1.331756 CATTCACTAGCCATTGCGGTC 59.668 52.381 0.00 0.00 44.33 4.79
351 1254 1.340017 ACATTCACTAGCCATTGCGGT 60.340 47.619 0.00 0.00 44.33 5.68
352 1255 1.382522 ACATTCACTAGCCATTGCGG 58.617 50.000 0.00 0.00 44.33 5.69
353 1256 2.223340 GGAACATTCACTAGCCATTGCG 60.223 50.000 0.00 0.00 44.33 4.85
354 1257 2.099756 GGGAACATTCACTAGCCATTGC 59.900 50.000 0.00 0.00 37.95 3.56
355 1258 3.379372 CAGGGAACATTCACTAGCCATTG 59.621 47.826 0.00 0.00 39.37 2.82
356 1259 3.266772 TCAGGGAACATTCACTAGCCATT 59.733 43.478 0.00 0.00 39.37 3.16
357 1260 2.846206 TCAGGGAACATTCACTAGCCAT 59.154 45.455 0.00 0.00 39.37 4.40
358 1261 2.237143 CTCAGGGAACATTCACTAGCCA 59.763 50.000 0.00 0.00 39.37 4.75
359 1262 2.501723 TCTCAGGGAACATTCACTAGCC 59.498 50.000 0.00 0.00 39.37 3.93
365 1268 3.349927 CATGCTTCTCAGGGAACATTCA 58.650 45.455 0.00 0.00 0.00 2.57
375 1278 1.400629 CGCAAACACCATGCTTCTCAG 60.401 52.381 0.00 0.00 41.64 3.35
400 1303 9.352784 TGTGTTTGAAGAACTTGTCATAAAAAG 57.647 29.630 0.00 0.00 0.00 2.27
414 1317 2.404923 TGTCCCGTGTGTTTGAAGAA 57.595 45.000 0.00 0.00 0.00 2.52
422 1325 3.818773 CCTAAAGAAATTGTCCCGTGTGT 59.181 43.478 0.00 0.00 0.00 3.72
428 1331 8.406297 GTCATGTATTCCTAAAGAAATTGTCCC 58.594 37.037 0.00 0.00 38.21 4.46
429 1332 8.956426 TGTCATGTATTCCTAAAGAAATTGTCC 58.044 33.333 0.00 0.00 38.21 4.02
496 1399 6.596497 GGAACATGGCAATTTCTTCAATCAAT 59.404 34.615 10.29 0.00 0.00 2.57
517 1420 4.599047 TGGAATTTCATGTTGTGGGAAC 57.401 40.909 0.00 0.00 0.00 3.62
518 1421 4.837298 TCATGGAATTTCATGTTGTGGGAA 59.163 37.500 23.27 1.94 43.52 3.97
519 1422 4.414677 TCATGGAATTTCATGTTGTGGGA 58.585 39.130 23.27 2.64 43.52 4.37
530 1433 4.442733 TGCGAACGTTTTTCATGGAATTTC 59.557 37.500 0.46 0.00 0.00 2.17
555 1459 4.732784 TGCATTACGAAAATCTTGGCTTC 58.267 39.130 0.00 0.00 0.00 3.86
556 1460 4.782019 TGCATTACGAAAATCTTGGCTT 57.218 36.364 0.00 0.00 0.00 4.35
557 1461 4.782019 TTGCATTACGAAAATCTTGGCT 57.218 36.364 0.00 0.00 0.00 4.75
570 1537 2.661195 GTGCGTTTCCACATTGCATTAC 59.339 45.455 0.00 0.00 37.93 1.89
588 1555 1.478105 GGGAAGGAATGATGGTTGTGC 59.522 52.381 0.00 0.00 0.00 4.57
591 1558 4.235079 TGTAGGGAAGGAATGATGGTTG 57.765 45.455 0.00 0.00 0.00 3.77
597 1564 3.581332 AGTCGTTTGTAGGGAAGGAATGA 59.419 43.478 0.00 0.00 0.00 2.57
629 1596 6.932356 TCATCATTCTTCCATCTGCTTAAC 57.068 37.500 0.00 0.00 0.00 2.01
710 1677 1.609555 GTCCTGCCTCGTAGGAGTATG 59.390 57.143 11.31 0.00 44.56 2.39
836 1807 2.514824 GGGAGATTGTGCGAGGCC 60.515 66.667 0.00 0.00 0.00 5.19
841 1812 3.499737 GTGCCGGGAGATTGTGCG 61.500 66.667 2.18 0.00 0.00 5.34
1002 1973 1.004080 TTGCTCTGCTGTCTGCTCC 60.004 57.895 3.20 0.00 43.37 4.70
1010 1981 2.254737 CTCTCCCCCTTGCTCTGCTG 62.255 65.000 0.00 0.00 0.00 4.41
1012 1983 1.970352 CTCTCTCCCCCTTGCTCTGC 61.970 65.000 0.00 0.00 0.00 4.26
1013 1984 1.336632 CCTCTCTCCCCCTTGCTCTG 61.337 65.000 0.00 0.00 0.00 3.35
1014 1985 1.002792 CCTCTCTCCCCCTTGCTCT 59.997 63.158 0.00 0.00 0.00 4.09
1015 1986 0.399806 ATCCTCTCTCCCCCTTGCTC 60.400 60.000 0.00 0.00 0.00 4.26
1016 1987 0.944999 TATCCTCTCTCCCCCTTGCT 59.055 55.000 0.00 0.00 0.00 3.91
1017 1988 1.133009 TCTATCCTCTCTCCCCCTTGC 60.133 57.143 0.00 0.00 0.00 4.01
1018 1989 2.492567 CCTCTATCCTCTCTCCCCCTTG 60.493 59.091 0.00 0.00 0.00 3.61
1019 1990 1.792651 CCTCTATCCTCTCTCCCCCTT 59.207 57.143 0.00 0.00 0.00 3.95
1020 1991 1.466858 CCTCTATCCTCTCTCCCCCT 58.533 60.000 0.00 0.00 0.00 4.79
1021 1992 0.411848 CCCTCTATCCTCTCTCCCCC 59.588 65.000 0.00 0.00 0.00 5.40
1022 1993 1.357761 CTCCCTCTATCCTCTCTCCCC 59.642 61.905 0.00 0.00 0.00 4.81
1023 1994 2.041216 GTCTCCCTCTATCCTCTCTCCC 59.959 59.091 0.00 0.00 0.00 4.30
1044 2015 2.057316 GATGCGGAAGACATCGATCAG 58.943 52.381 0.00 0.00 35.86 2.90
1122 2102 1.152030 TCCCTCCTCAGCCAAGTGT 60.152 57.895 0.00 0.00 0.00 3.55
2172 4461 2.228582 TGGAACGCGCTGTTTACTAGTA 59.771 45.455 16.45 0.00 42.09 1.82
2173 4462 1.000060 TGGAACGCGCTGTTTACTAGT 60.000 47.619 16.45 0.00 42.09 2.57
2268 4569 2.689983 GCATCAGAATCCATCCGGTTTT 59.310 45.455 0.00 0.00 0.00 2.43
2310 4611 3.025924 TGCCCAAAAGCAGAGACTG 57.974 52.632 0.00 0.00 38.00 3.51
2391 4692 2.464459 CCGCCGACATTCTCCAAGC 61.464 63.158 0.00 0.00 0.00 4.01
2427 4728 1.153745 CTCAAAGTCCCCGAGCGAG 60.154 63.158 0.00 0.00 0.00 5.03
2456 4782 3.419596 GTGGAATTTTCGTTTCGTTTCGG 59.580 43.478 0.00 0.00 0.00 4.30
2495 4821 2.286872 GCACGTACTAGAGTAGGAGCA 58.713 52.381 19.93 0.00 45.46 4.26
2514 4859 3.115554 ACAACTCAAATCAAAACGCAGC 58.884 40.909 0.00 0.00 0.00 5.25
2519 4864 9.447040 GTAAAGGAGTACAACTCAAATCAAAAC 57.553 33.333 9.15 0.00 46.79 2.43
2542 4887 9.959749 GAATGAAAATTACAAACTGACCAGTAA 57.040 29.630 2.78 0.00 41.58 2.24
2675 5029 2.232941 CCGCTGTCCCTTACTAGTTTCA 59.767 50.000 0.00 0.00 0.00 2.69
2698 5052 2.598394 TGCCCTGCCTCAAAGCAC 60.598 61.111 0.00 0.00 38.00 4.40
2719 5073 4.032703 ACACACAACACATGCTTTCTTC 57.967 40.909 0.00 0.00 0.00 2.87
2730 5084 2.030540 TCTCTACGCCTACACACAACAC 60.031 50.000 0.00 0.00 0.00 3.32
2812 5166 2.155279 GATCATGCTCATGCTCATGCT 58.845 47.619 17.06 10.85 39.76 3.79
2813 5167 1.880027 TGATCATGCTCATGCTCATGC 59.120 47.619 17.06 8.77 38.55 4.06
2988 5343 7.548427 CAGATATGATATGATCACTGGAACACC 59.452 40.741 0.00 0.00 43.01 4.16
3037 5397 4.017808 GTTTCTCCAGTCCAGAGCTAGTA 58.982 47.826 0.00 0.00 0.00 1.82
3038 5398 2.829120 GTTTCTCCAGTCCAGAGCTAGT 59.171 50.000 0.00 0.00 0.00 2.57
3039 5399 3.096092 AGTTTCTCCAGTCCAGAGCTAG 58.904 50.000 0.00 0.00 0.00 3.42
3118 5478 1.001503 AGGTGCTGAGGAGGAGGAG 59.998 63.158 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.