Multiple sequence alignment - TraesCS1A01G215000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G215000 chr1A 100.000 2685 0 0 1 2685 379646468 379649152 0.000000e+00 4959.0
1 TraesCS1A01G215000 chr1A 95.423 852 32 5 1 845 551601776 551602627 0.000000e+00 1351.0
2 TraesCS1A01G215000 chr3D 95.756 1767 75 0 919 2685 10933357 10931591 0.000000e+00 2848.0
3 TraesCS1A01G215000 chr3D 95.516 1249 55 1 919 2166 588696216 588697464 0.000000e+00 1995.0
4 TraesCS1A01G215000 chr3D 100.000 30 0 0 876 905 10935930 10935901 3.730000e-04 56.5
5 TraesCS1A01G215000 chr3D 90.698 43 2 2 865 905 588693320 588693362 3.730000e-04 56.5
6 TraesCS1A01G215000 chr2D 95.529 1767 73 4 920 2683 586831028 586832791 0.000000e+00 2820.0
7 TraesCS1A01G215000 chr2D 86.705 865 89 15 1 843 581825001 581825861 0.000000e+00 937.0
8 TraesCS1A01G215000 chr2D 76.792 530 59 35 126 643 374343170 374342693 3.450000e-59 239.0
9 TraesCS1A01G215000 chr6D 95.020 1767 84 3 919 2685 372613671 372611909 0.000000e+00 2772.0
10 TraesCS1A01G215000 chr6D 100.000 30 0 0 876 905 372616252 372616223 3.730000e-04 56.5
11 TraesCS1A01G215000 chr5D 94.862 1771 85 3 919 2685 556578648 556576880 0.000000e+00 2761.0
12 TraesCS1A01G215000 chr1B 94.181 1770 95 6 919 2685 137871052 137872816 0.000000e+00 2691.0
13 TraesCS1A01G215000 chr1B 83.922 877 91 26 1 843 631998235 631999095 0.000000e+00 793.0
14 TraesCS1A01G215000 chr5A 95.014 1043 47 3 919 1961 155591749 155592786 0.000000e+00 1633.0
15 TraesCS1A01G215000 chr5A 89.831 118 12 0 261 378 557662655 557662772 4.630000e-33 152.0
16 TraesCS1A01G215000 chr7B 94.861 973 43 4 1717 2685 97118346 97117377 0.000000e+00 1513.0
17 TraesCS1A01G215000 chr7B 94.900 804 41 0 919 1722 97120431 97119628 0.000000e+00 1258.0
18 TraesCS1A01G215000 chr7B 93.657 804 49 1 919 1722 89870317 89869516 0.000000e+00 1201.0
19 TraesCS1A01G215000 chr7B 93.453 779 44 5 1910 2684 89869033 89868258 0.000000e+00 1149.0
20 TraesCS1A01G215000 chr7B 91.899 753 49 10 1940 2685 268652038 268652785 0.000000e+00 1042.0
21 TraesCS1A01G215000 chr5B 95.845 746 26 3 1943 2685 528386157 528385414 0.000000e+00 1201.0
22 TraesCS1A01G215000 chr5B 86.538 156 17 2 261 416 4574530 4574681 4.600000e-38 169.0
23 TraesCS1A01G215000 chr1D 87.168 865 84 16 1 843 262327631 262326772 0.000000e+00 957.0
24 TraesCS1A01G215000 chr1D 86.744 860 91 12 1 843 459886798 459887651 0.000000e+00 935.0
25 TraesCS1A01G215000 chr7A 92.548 671 39 6 1717 2379 633539080 633538413 0.000000e+00 952.0
26 TraesCS1A01G215000 chr3A 78.086 397 45 23 261 643 734197313 734196945 2.090000e-51 213.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G215000 chr1A 379646468 379649152 2684 False 4959.00 4959 100.0000 1 2685 1 chr1A.!!$F1 2684
1 TraesCS1A01G215000 chr1A 551601776 551602627 851 False 1351.00 1351 95.4230 1 845 1 chr1A.!!$F2 844
2 TraesCS1A01G215000 chr3D 10931591 10935930 4339 True 1452.25 2848 97.8780 876 2685 2 chr3D.!!$R1 1809
3 TraesCS1A01G215000 chr3D 588693320 588697464 4144 False 1025.75 1995 93.1070 865 2166 2 chr3D.!!$F1 1301
4 TraesCS1A01G215000 chr2D 586831028 586832791 1763 False 2820.00 2820 95.5290 920 2683 1 chr2D.!!$F2 1763
5 TraesCS1A01G215000 chr2D 581825001 581825861 860 False 937.00 937 86.7050 1 843 1 chr2D.!!$F1 842
6 TraesCS1A01G215000 chr6D 372611909 372616252 4343 True 1414.25 2772 97.5100 876 2685 2 chr6D.!!$R1 1809
7 TraesCS1A01G215000 chr5D 556576880 556578648 1768 True 2761.00 2761 94.8620 919 2685 1 chr5D.!!$R1 1766
8 TraesCS1A01G215000 chr1B 137871052 137872816 1764 False 2691.00 2691 94.1810 919 2685 1 chr1B.!!$F1 1766
9 TraesCS1A01G215000 chr1B 631998235 631999095 860 False 793.00 793 83.9220 1 843 1 chr1B.!!$F2 842
10 TraesCS1A01G215000 chr5A 155591749 155592786 1037 False 1633.00 1633 95.0140 919 1961 1 chr5A.!!$F1 1042
11 TraesCS1A01G215000 chr7B 97117377 97120431 3054 True 1385.50 1513 94.8805 919 2685 2 chr7B.!!$R2 1766
12 TraesCS1A01G215000 chr7B 89868258 89870317 2059 True 1175.00 1201 93.5550 919 2684 2 chr7B.!!$R1 1765
13 TraesCS1A01G215000 chr7B 268652038 268652785 747 False 1042.00 1042 91.8990 1940 2685 1 chr7B.!!$F1 745
14 TraesCS1A01G215000 chr5B 528385414 528386157 743 True 1201.00 1201 95.8450 1943 2685 1 chr5B.!!$R1 742
15 TraesCS1A01G215000 chr1D 262326772 262327631 859 True 957.00 957 87.1680 1 843 1 chr1D.!!$R1 842
16 TraesCS1A01G215000 chr1D 459886798 459887651 853 False 935.00 935 86.7440 1 843 1 chr1D.!!$F1 842
17 TraesCS1A01G215000 chr7A 633538413 633539080 667 True 952.00 952 92.5480 1717 2379 1 chr7A.!!$R1 662

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
589 599 0.035317 TGTCAGCGAGGTGATTTGCT 59.965 50.0 8.27 0.0 38.35 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1686 4577 0.035458 AACAGCGGCAAGTAGAAGCT 59.965 50.0 1.45 0.0 38.9 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 1.338337 GACGGTGATCGACATCCTCAT 59.662 52.381 0.00 0.00 42.43 2.90
77 78 2.364324 TCTGCCAGAAGTACGACAAGTT 59.636 45.455 0.00 0.00 0.00 2.66
100 101 2.048222 CCGAGAAGCTCAACGGCA 60.048 61.111 11.30 0.00 38.98 5.69
171 172 1.101635 CCGAGATCTCCCAGTGCGTA 61.102 60.000 17.13 0.00 0.00 4.42
184 185 3.909285 GCGTAGAGGTACCCCGCC 61.909 72.222 19.38 4.34 38.52 6.13
188 189 2.639690 TAGAGGTACCCCGCCCCTT 61.640 63.158 8.74 0.00 35.12 3.95
245 252 3.456663 GCGCGACGATCTGAATCTA 57.543 52.632 12.10 0.00 0.00 1.98
246 253 1.046230 GCGCGACGATCTGAATCTAC 58.954 55.000 12.10 0.00 0.00 2.59
317 327 3.627218 GCCACGGTTATCGCGCTC 61.627 66.667 5.56 0.00 43.89 5.03
318 328 2.202690 CCACGGTTATCGCGCTCA 60.203 61.111 5.56 0.00 43.89 4.26
319 329 1.807981 CCACGGTTATCGCGCTCAA 60.808 57.895 5.56 0.00 43.89 3.02
320 330 1.151777 CCACGGTTATCGCGCTCAAT 61.152 55.000 5.56 0.00 43.89 2.57
321 331 0.043053 CACGGTTATCGCGCTCAATG 60.043 55.000 5.56 0.00 43.89 2.82
322 332 1.083401 CGGTTATCGCGCTCAATGC 60.083 57.895 5.56 0.00 38.57 3.56
323 333 1.279840 GGTTATCGCGCTCAATGCC 59.720 57.895 5.56 0.00 38.78 4.40
324 334 1.083401 GTTATCGCGCTCAATGCCG 60.083 57.895 5.56 0.00 38.78 5.69
325 335 1.227118 TTATCGCGCTCAATGCCGA 60.227 52.632 5.56 0.00 44.04 5.54
326 336 1.215014 TTATCGCGCTCAATGCCGAG 61.215 55.000 5.56 0.00 43.51 4.63
327 337 2.070654 TATCGCGCTCAATGCCGAGA 62.071 55.000 5.56 2.89 43.51 4.04
328 338 2.705934 ATCGCGCTCAATGCCGAGAT 62.706 55.000 5.56 6.56 43.51 2.75
329 339 2.934428 GCGCTCAATGCCGAGATC 59.066 61.111 0.00 0.00 38.78 2.75
330 340 2.602322 GCGCTCAATGCCGAGATCC 61.602 63.158 0.00 0.00 38.78 3.36
331 341 1.068753 CGCTCAATGCCGAGATCCT 59.931 57.895 0.00 0.00 38.78 3.24
332 342 0.943359 CGCTCAATGCCGAGATCCTC 60.943 60.000 0.00 0.00 38.78 3.71
333 343 0.602372 GCTCAATGCCGAGATCCTCC 60.602 60.000 0.00 0.00 34.79 4.30
334 344 0.319383 CTCAATGCCGAGATCCTCCG 60.319 60.000 0.00 0.00 34.79 4.63
335 345 1.958205 CAATGCCGAGATCCTCCGC 60.958 63.158 0.00 0.00 35.81 5.54
336 346 3.506059 AATGCCGAGATCCTCCGCG 62.506 63.158 0.00 0.00 37.50 6.46
339 349 4.207281 CCGAGATCCTCCGCGCAA 62.207 66.667 8.75 0.00 0.00 4.85
340 350 2.202743 CGAGATCCTCCGCGCAAA 60.203 61.111 8.75 0.00 0.00 3.68
341 351 2.233654 CGAGATCCTCCGCGCAAAG 61.234 63.158 8.75 3.22 0.00 2.77
342 352 1.884926 GAGATCCTCCGCGCAAAGG 60.885 63.158 16.95 16.95 0.00 3.11
343 353 3.577313 GATCCTCCGCGCAAAGGC 61.577 66.667 17.99 4.02 32.37 4.35
347 357 4.107051 CTCCGCGCAAAGGCCAAG 62.107 66.667 8.75 0.00 36.38 3.61
350 360 4.766088 CGCGCAAAGGCCAAGCTC 62.766 66.667 8.75 0.00 36.38 4.09
351 361 4.426112 GCGCAAAGGCCAAGCTCC 62.426 66.667 5.01 0.00 36.38 4.70
352 362 2.674380 CGCAAAGGCCAAGCTCCT 60.674 61.111 5.01 0.00 36.38 3.69
353 363 2.694760 CGCAAAGGCCAAGCTCCTC 61.695 63.158 5.01 0.00 36.38 3.71
354 364 2.694760 GCAAAGGCCAAGCTCCTCG 61.695 63.158 5.01 0.00 32.45 4.63
355 365 1.003355 CAAAGGCCAAGCTCCTCGA 60.003 57.895 5.01 0.00 32.45 4.04
356 366 1.023513 CAAAGGCCAAGCTCCTCGAG 61.024 60.000 5.01 5.13 32.45 4.04
357 367 2.190488 AAAGGCCAAGCTCCTCGAGG 62.190 60.000 26.32 26.32 32.45 4.63
358 368 3.077556 GGCCAAGCTCCTCGAGGA 61.078 66.667 31.67 31.67 43.08 3.71
372 382 3.334054 AGGAGGACCTGCCCAAGC 61.334 66.667 9.78 0.00 45.92 4.01
373 383 3.334054 GGAGGACCTGCCCAAGCT 61.334 66.667 0.00 0.00 40.80 3.74
374 384 2.045536 GAGGACCTGCCCAAGCTG 60.046 66.667 0.00 0.00 40.80 4.24
375 385 4.357279 AGGACCTGCCCAAGCTGC 62.357 66.667 0.00 0.00 40.80 5.25
376 386 4.666253 GGACCTGCCCAAGCTGCA 62.666 66.667 1.02 0.00 40.80 4.41
383 393 3.060615 CCCAAGCTGCAGTGCCTC 61.061 66.667 16.64 3.99 0.00 4.70
384 394 3.429141 CCAAGCTGCAGTGCCTCG 61.429 66.667 16.64 2.04 0.00 4.63
385 395 4.099170 CAAGCTGCAGTGCCTCGC 62.099 66.667 16.64 12.56 0.00 5.03
386 396 4.631247 AAGCTGCAGTGCCTCGCA 62.631 61.111 16.64 0.00 35.60 5.10
395 405 4.681421 TGCCTCGCACTCAAGAAG 57.319 55.556 0.00 0.00 31.71 2.85
396 406 1.004560 TGCCTCGCACTCAAGAAGG 60.005 57.895 0.00 0.00 31.71 3.46
397 407 1.004440 GCCTCGCACTCAAGAAGGT 60.004 57.895 0.00 0.00 0.00 3.50
398 408 1.016653 GCCTCGCACTCAAGAAGGTC 61.017 60.000 0.00 0.00 0.00 3.85
399 409 0.390472 CCTCGCACTCAAGAAGGTCC 60.390 60.000 0.00 0.00 0.00 4.46
400 410 0.734253 CTCGCACTCAAGAAGGTCCG 60.734 60.000 0.00 0.00 0.00 4.79
401 411 1.006102 CGCACTCAAGAAGGTCCGT 60.006 57.895 0.00 0.00 0.00 4.69
402 412 1.009389 CGCACTCAAGAAGGTCCGTC 61.009 60.000 0.00 0.00 0.00 4.79
403 413 0.670854 GCACTCAAGAAGGTCCGTCC 60.671 60.000 0.61 0.00 0.00 4.79
404 414 0.679505 CACTCAAGAAGGTCCGTCCA 59.320 55.000 0.61 0.00 39.02 4.02
405 415 1.070134 CACTCAAGAAGGTCCGTCCAA 59.930 52.381 0.61 0.00 39.02 3.53
406 416 1.978580 ACTCAAGAAGGTCCGTCCAAT 59.021 47.619 0.61 0.00 39.02 3.16
407 417 2.028020 ACTCAAGAAGGTCCGTCCAATC 60.028 50.000 0.61 0.00 39.02 2.67
408 418 1.974957 TCAAGAAGGTCCGTCCAATCA 59.025 47.619 0.61 0.00 39.02 2.57
409 419 2.571653 TCAAGAAGGTCCGTCCAATCAT 59.428 45.455 0.61 0.00 39.02 2.45
410 420 2.939103 CAAGAAGGTCCGTCCAATCATC 59.061 50.000 0.61 0.00 39.02 2.92
411 421 2.472029 AGAAGGTCCGTCCAATCATCT 58.528 47.619 0.61 0.00 39.02 2.90
412 422 2.432510 AGAAGGTCCGTCCAATCATCTC 59.567 50.000 0.61 0.00 39.02 2.75
413 423 2.166907 AGGTCCGTCCAATCATCTCT 57.833 50.000 0.00 0.00 39.02 3.10
414 424 1.759445 AGGTCCGTCCAATCATCTCTG 59.241 52.381 0.00 0.00 39.02 3.35
415 425 1.576356 GTCCGTCCAATCATCTCTGC 58.424 55.000 0.00 0.00 0.00 4.26
416 426 0.103026 TCCGTCCAATCATCTCTGCG 59.897 55.000 0.00 0.00 0.00 5.18
417 427 1.493950 CCGTCCAATCATCTCTGCGC 61.494 60.000 0.00 0.00 0.00 6.09
418 428 0.529337 CGTCCAATCATCTCTGCGCT 60.529 55.000 9.73 0.00 0.00 5.92
419 429 0.935898 GTCCAATCATCTCTGCGCTG 59.064 55.000 9.73 8.88 0.00 5.18
420 430 0.826062 TCCAATCATCTCTGCGCTGA 59.174 50.000 16.55 16.55 0.00 4.26
421 431 0.935898 CCAATCATCTCTGCGCTGAC 59.064 55.000 13.46 0.00 0.00 3.51
422 432 0.935898 CAATCATCTCTGCGCTGACC 59.064 55.000 13.46 0.00 0.00 4.02
423 433 0.179062 AATCATCTCTGCGCTGACCC 60.179 55.000 13.46 0.00 0.00 4.46
424 434 2.360949 ATCATCTCTGCGCTGACCCG 62.361 60.000 13.46 4.30 0.00 5.28
432 442 3.437867 CGCTGACCCGCTAGATCT 58.562 61.111 0.00 0.00 0.00 2.75
433 443 1.007964 CGCTGACCCGCTAGATCTG 60.008 63.158 5.18 0.00 0.00 2.90
434 444 1.300542 GCTGACCCGCTAGATCTGC 60.301 63.158 5.18 6.29 0.00 4.26
435 445 1.743321 GCTGACCCGCTAGATCTGCT 61.743 60.000 5.18 0.00 35.23 4.24
436 446 0.749649 CTGACCCGCTAGATCTGCTT 59.250 55.000 5.18 0.00 0.00 3.91
437 447 0.747255 TGACCCGCTAGATCTGCTTC 59.253 55.000 5.18 4.84 0.00 3.86
438 448 1.036707 GACCCGCTAGATCTGCTTCT 58.963 55.000 5.18 0.00 0.00 2.85
439 449 1.410882 GACCCGCTAGATCTGCTTCTT 59.589 52.381 5.18 0.00 0.00 2.52
440 450 1.410882 ACCCGCTAGATCTGCTTCTTC 59.589 52.381 5.18 0.00 0.00 2.87
441 451 1.686052 CCCGCTAGATCTGCTTCTTCT 59.314 52.381 5.18 0.00 0.00 2.85
442 452 2.545532 CCCGCTAGATCTGCTTCTTCTG 60.546 54.545 5.18 0.00 0.00 3.02
443 453 2.100584 CCGCTAGATCTGCTTCTTCTGT 59.899 50.000 5.18 0.00 0.00 3.41
444 454 3.114809 CGCTAGATCTGCTTCTTCTGTG 58.885 50.000 5.18 0.00 0.00 3.66
445 455 3.456280 GCTAGATCTGCTTCTTCTGTGG 58.544 50.000 5.18 0.00 0.00 4.17
446 456 2.399916 AGATCTGCTTCTTCTGTGGC 57.600 50.000 0.00 0.00 0.00 5.01
447 457 1.065564 AGATCTGCTTCTTCTGTGGCC 60.066 52.381 0.00 0.00 0.00 5.36
448 458 0.392193 ATCTGCTTCTTCTGTGGCCG 60.392 55.000 0.00 0.00 0.00 6.13
449 459 2.669569 TGCTTCTTCTGTGGCCGC 60.670 61.111 10.11 10.11 0.00 6.53
450 460 2.359230 GCTTCTTCTGTGGCCGCT 60.359 61.111 18.96 0.00 0.00 5.52
451 461 1.079127 GCTTCTTCTGTGGCCGCTA 60.079 57.895 18.96 2.46 0.00 4.26
452 462 1.086634 GCTTCTTCTGTGGCCGCTAG 61.087 60.000 18.96 13.11 0.00 3.42
453 463 0.460987 CTTCTTCTGTGGCCGCTAGG 60.461 60.000 18.96 6.43 41.62 3.02
454 464 0.902984 TTCTTCTGTGGCCGCTAGGA 60.903 55.000 18.96 8.82 41.02 2.94
461 471 3.217231 GGCCGCTAGGACTTGCTA 58.783 61.111 4.41 0.00 44.23 3.49
462 472 1.749033 GGCCGCTAGGACTTGCTAT 59.251 57.895 4.41 0.00 44.23 2.97
463 473 0.319986 GGCCGCTAGGACTTGCTATC 60.320 60.000 4.41 0.00 44.23 2.08
464 474 0.319986 GCCGCTAGGACTTGCTATCC 60.320 60.000 4.41 0.00 41.02 2.59
465 475 1.040646 CCGCTAGGACTTGCTATCCA 58.959 55.000 4.41 0.00 41.02 3.41
466 476 1.620819 CCGCTAGGACTTGCTATCCAT 59.379 52.381 4.41 0.00 41.02 3.41
467 477 2.611473 CCGCTAGGACTTGCTATCCATG 60.611 54.545 4.41 0.00 41.02 3.66
468 478 2.036475 CGCTAGGACTTGCTATCCATGT 59.964 50.000 4.41 0.00 38.86 3.21
469 479 3.493350 CGCTAGGACTTGCTATCCATGTT 60.493 47.826 4.41 0.00 38.86 2.71
470 480 3.812053 GCTAGGACTTGCTATCCATGTTG 59.188 47.826 4.59 0.00 38.86 3.33
471 481 4.684485 GCTAGGACTTGCTATCCATGTTGT 60.684 45.833 4.59 0.00 38.86 3.32
472 482 4.307032 AGGACTTGCTATCCATGTTGTT 57.693 40.909 4.59 0.00 38.86 2.83
473 483 4.666512 AGGACTTGCTATCCATGTTGTTT 58.333 39.130 4.59 0.00 38.86 2.83
474 484 5.815581 AGGACTTGCTATCCATGTTGTTTA 58.184 37.500 4.59 0.00 38.86 2.01
475 485 5.648092 AGGACTTGCTATCCATGTTGTTTAC 59.352 40.000 4.59 0.00 38.86 2.01
476 486 5.648092 GGACTTGCTATCCATGTTGTTTACT 59.352 40.000 0.00 0.00 36.15 2.24
477 487 6.821665 GGACTTGCTATCCATGTTGTTTACTA 59.178 38.462 0.00 0.00 36.15 1.82
478 488 7.011482 GGACTTGCTATCCATGTTGTTTACTAG 59.989 40.741 0.00 0.00 36.15 2.57
479 489 6.316390 ACTTGCTATCCATGTTGTTTACTAGC 59.684 38.462 0.00 0.00 0.00 3.42
480 490 5.739959 TGCTATCCATGTTGTTTACTAGCA 58.260 37.500 0.00 0.00 38.31 3.49
481 491 5.817296 TGCTATCCATGTTGTTTACTAGCAG 59.183 40.000 0.00 0.00 36.39 4.24
482 492 5.277538 GCTATCCATGTTGTTTACTAGCAGC 60.278 44.000 0.00 0.00 32.58 5.25
483 493 4.014569 TCCATGTTGTTTACTAGCAGCA 57.985 40.909 0.00 0.00 0.00 4.41
484 494 4.393834 TCCATGTTGTTTACTAGCAGCAA 58.606 39.130 0.00 0.00 30.23 3.91
485 495 4.824537 TCCATGTTGTTTACTAGCAGCAAA 59.175 37.500 0.00 0.00 30.23 3.68
486 496 5.300539 TCCATGTTGTTTACTAGCAGCAAAA 59.699 36.000 0.00 0.00 30.23 2.44
487 497 5.630680 CCATGTTGTTTACTAGCAGCAAAAG 59.369 40.000 0.00 0.00 30.23 2.27
488 498 6.437928 CATGTTGTTTACTAGCAGCAAAAGA 58.562 36.000 0.00 0.00 30.23 2.52
489 499 6.060028 TGTTGTTTACTAGCAGCAAAAGAG 57.940 37.500 0.00 0.00 0.00 2.85
490 500 5.008613 TGTTGTTTACTAGCAGCAAAAGAGG 59.991 40.000 0.00 0.00 0.00 3.69
491 501 3.502211 TGTTTACTAGCAGCAAAAGAGGC 59.498 43.478 0.00 0.00 0.00 4.70
492 502 3.703001 TTACTAGCAGCAAAAGAGGCT 57.297 42.857 0.00 0.00 43.77 4.58
493 503 4.819105 TTACTAGCAGCAAAAGAGGCTA 57.181 40.909 0.00 0.00 40.23 3.93
495 505 1.939255 CTAGCAGCAAAAGAGGCTAGC 59.061 52.381 6.04 6.04 46.28 3.42
496 506 0.327591 AGCAGCAAAAGAGGCTAGCT 59.672 50.000 15.72 0.00 40.23 3.32
497 507 1.172175 GCAGCAAAAGAGGCTAGCTT 58.828 50.000 15.72 6.94 40.23 3.74
498 508 2.026822 AGCAGCAAAAGAGGCTAGCTTA 60.027 45.455 15.72 0.00 40.37 3.09
499 509 2.096657 GCAGCAAAAGAGGCTAGCTTAC 59.903 50.000 15.72 6.47 40.23 2.34
500 510 2.680339 CAGCAAAAGAGGCTAGCTTACC 59.320 50.000 15.72 0.00 40.23 2.85
501 511 2.573915 AGCAAAAGAGGCTAGCTTACCT 59.426 45.455 15.72 6.92 40.47 3.08
502 512 3.009584 AGCAAAAGAGGCTAGCTTACCTT 59.990 43.478 15.72 4.79 40.47 3.50
503 513 3.127721 GCAAAAGAGGCTAGCTTACCTTG 59.872 47.826 15.72 13.50 36.05 3.61
504 514 4.579869 CAAAAGAGGCTAGCTTACCTTGA 58.420 43.478 15.72 0.00 36.05 3.02
505 515 4.910458 AAAGAGGCTAGCTTACCTTGAA 57.090 40.909 15.72 0.00 36.05 2.69
506 516 4.479786 AAGAGGCTAGCTTACCTTGAAG 57.520 45.455 15.72 0.00 36.05 3.02
507 517 2.769095 AGAGGCTAGCTTACCTTGAAGG 59.231 50.000 15.72 10.24 42.49 3.46
508 518 2.766828 GAGGCTAGCTTACCTTGAAGGA 59.233 50.000 19.83 0.00 37.67 3.36
509 519 2.769095 AGGCTAGCTTACCTTGAAGGAG 59.231 50.000 19.83 6.92 37.67 3.69
510 520 2.766828 GGCTAGCTTACCTTGAAGGAGA 59.233 50.000 19.83 2.03 37.67 3.71
511 521 3.431068 GGCTAGCTTACCTTGAAGGAGAC 60.431 52.174 19.83 1.30 37.67 3.36
512 522 7.823884 AGGCTAGCTTACCTTGAAGGAGACT 62.824 48.000 19.83 8.13 37.67 3.24
513 523 3.971245 AGCTTACCTTGAAGGAGACTG 57.029 47.619 19.83 4.38 42.68 3.51
514 524 2.027653 AGCTTACCTTGAAGGAGACTGC 60.028 50.000 19.83 13.53 42.68 4.40
515 525 2.937433 GCTTACCTTGAAGGAGACTGCC 60.937 54.545 19.83 0.00 42.68 4.85
516 526 2.327325 TACCTTGAAGGAGACTGCCT 57.673 50.000 19.83 0.00 42.68 4.75
517 527 2.327325 ACCTTGAAGGAGACTGCCTA 57.673 50.000 19.83 0.00 42.68 3.93
518 528 2.621070 ACCTTGAAGGAGACTGCCTAA 58.379 47.619 19.83 0.00 42.68 2.69
519 529 2.979678 ACCTTGAAGGAGACTGCCTAAA 59.020 45.455 19.83 0.00 42.68 1.85
520 530 3.589288 ACCTTGAAGGAGACTGCCTAAAT 59.411 43.478 19.83 0.00 42.68 1.40
521 531 4.043435 ACCTTGAAGGAGACTGCCTAAATT 59.957 41.667 19.83 0.00 42.68 1.82
522 532 5.012893 CCTTGAAGGAGACTGCCTAAATTT 58.987 41.667 4.95 0.00 42.68 1.82
523 533 6.180472 CCTTGAAGGAGACTGCCTAAATTTA 58.820 40.000 4.95 0.00 42.68 1.40
524 534 6.317391 CCTTGAAGGAGACTGCCTAAATTTAG 59.683 42.308 16.90 16.90 42.68 1.85
525 535 5.745227 TGAAGGAGACTGCCTAAATTTAGG 58.255 41.667 31.88 31.88 46.86 2.69
526 536 5.117406 AAGGAGACTGCCTAAATTTAGGG 57.883 43.478 34.79 24.97 45.32 3.53
527 537 4.540502 AAGGAGACTGCCTAAATTTAGGGT 59.459 41.667 34.79 27.36 45.32 4.34
528 538 5.573707 AAGGAGACTGCCTAAATTTAGGGTG 60.574 44.000 34.79 17.49 45.32 4.61
529 539 8.991561 AAGGAGACTGCCTAAATTTAGGGTGC 62.992 46.154 34.79 24.53 45.32 5.01
533 543 0.661020 CCTAAATTTAGGGTGCGCGG 59.339 55.000 29.62 8.56 45.29 6.46
534 544 1.375551 CTAAATTTAGGGTGCGCGGT 58.624 50.000 16.19 0.00 0.00 5.68
535 545 1.741145 CTAAATTTAGGGTGCGCGGTT 59.259 47.619 16.19 0.00 0.00 4.44
536 546 0.242555 AAATTTAGGGTGCGCGGTTG 59.757 50.000 8.83 0.00 0.00 3.77
537 547 0.891904 AATTTAGGGTGCGCGGTTGT 60.892 50.000 8.83 0.00 0.00 3.32
538 548 0.891904 ATTTAGGGTGCGCGGTTGTT 60.892 50.000 8.83 0.00 0.00 2.83
539 549 1.787057 TTTAGGGTGCGCGGTTGTTG 61.787 55.000 8.83 0.00 0.00 3.33
540 550 2.661840 TTAGGGTGCGCGGTTGTTGA 62.662 55.000 8.83 0.00 0.00 3.18
541 551 2.661840 TAGGGTGCGCGGTTGTTGAA 62.662 55.000 8.83 0.00 0.00 2.69
542 552 2.642700 GGTGCGCGGTTGTTGAAT 59.357 55.556 8.83 0.00 0.00 2.57
543 553 1.729131 GGTGCGCGGTTGTTGAATG 60.729 57.895 8.83 0.00 0.00 2.67
544 554 1.008995 GTGCGCGGTTGTTGAATGT 60.009 52.632 8.83 0.00 0.00 2.71
545 555 0.996727 GTGCGCGGTTGTTGAATGTC 60.997 55.000 8.83 0.00 0.00 3.06
546 556 1.281353 GCGCGGTTGTTGAATGTCA 59.719 52.632 8.83 0.00 0.00 3.58
547 557 0.317436 GCGCGGTTGTTGAATGTCAA 60.317 50.000 8.83 0.00 33.32 3.18
559 569 6.820470 GTTGAATGTCAACGGAAAAATGAA 57.180 33.333 5.44 0.00 45.88 2.57
560 570 6.866347 GTTGAATGTCAACGGAAAAATGAAG 58.134 36.000 5.44 0.00 45.88 3.02
561 571 4.981674 TGAATGTCAACGGAAAAATGAAGC 59.018 37.500 0.00 0.00 0.00 3.86
562 572 4.582701 ATGTCAACGGAAAAATGAAGCA 57.417 36.364 0.00 0.00 0.00 3.91
563 573 4.377839 TGTCAACGGAAAAATGAAGCAA 57.622 36.364 0.00 0.00 0.00 3.91
564 574 4.942852 TGTCAACGGAAAAATGAAGCAAT 58.057 34.783 0.00 0.00 0.00 3.56
565 575 5.355596 TGTCAACGGAAAAATGAAGCAATT 58.644 33.333 0.00 0.00 0.00 2.32
566 576 5.814705 TGTCAACGGAAAAATGAAGCAATTT 59.185 32.000 0.00 0.00 0.00 1.82
567 577 6.019156 TGTCAACGGAAAAATGAAGCAATTTC 60.019 34.615 0.00 0.00 36.29 2.17
568 578 6.200854 GTCAACGGAAAAATGAAGCAATTTCT 59.799 34.615 0.00 0.00 36.71 2.52
569 579 6.200665 TCAACGGAAAAATGAAGCAATTTCTG 59.799 34.615 12.46 12.46 41.63 3.02
570 580 5.600696 ACGGAAAAATGAAGCAATTTCTGT 58.399 33.333 13.31 13.31 43.15 3.41
571 581 5.463061 ACGGAAAAATGAAGCAATTTCTGTG 59.537 36.000 16.17 7.87 45.06 3.66
572 582 5.463061 CGGAAAAATGAAGCAATTTCTGTGT 59.537 36.000 0.00 0.00 36.71 3.72
573 583 6.346040 CGGAAAAATGAAGCAATTTCTGTGTC 60.346 38.462 0.00 0.00 36.71 3.67
574 584 6.479660 GGAAAAATGAAGCAATTTCTGTGTCA 59.520 34.615 0.00 0.00 36.71 3.58
575 585 7.306983 GGAAAAATGAAGCAATTTCTGTGTCAG 60.307 37.037 0.00 0.00 36.71 3.51
576 586 3.631145 TGAAGCAATTTCTGTGTCAGC 57.369 42.857 0.00 0.00 36.71 4.26
577 587 2.031769 TGAAGCAATTTCTGTGTCAGCG 60.032 45.455 0.00 0.00 36.71 5.18
578 588 1.882912 AGCAATTTCTGTGTCAGCGA 58.117 45.000 0.00 0.00 0.00 4.93
579 589 1.802960 AGCAATTTCTGTGTCAGCGAG 59.197 47.619 0.00 0.00 0.00 5.03
580 590 1.135859 GCAATTTCTGTGTCAGCGAGG 60.136 52.381 0.00 0.00 0.00 4.63
581 591 2.146342 CAATTTCTGTGTCAGCGAGGT 58.854 47.619 0.00 0.00 0.00 3.85
582 592 1.800805 ATTTCTGTGTCAGCGAGGTG 58.199 50.000 0.00 0.00 0.00 4.00
583 593 0.750249 TTTCTGTGTCAGCGAGGTGA 59.250 50.000 0.35 0.35 0.00 4.02
584 594 0.969149 TTCTGTGTCAGCGAGGTGAT 59.031 50.000 8.27 0.00 0.00 3.06
585 595 0.969149 TCTGTGTCAGCGAGGTGATT 59.031 50.000 8.27 0.00 0.00 2.57
586 596 1.344438 TCTGTGTCAGCGAGGTGATTT 59.656 47.619 8.27 0.00 0.00 2.17
587 597 1.462283 CTGTGTCAGCGAGGTGATTTG 59.538 52.381 8.27 0.00 0.00 2.32
588 598 0.166814 GTGTCAGCGAGGTGATTTGC 59.833 55.000 8.27 0.00 0.00 3.68
589 599 0.035317 TGTCAGCGAGGTGATTTGCT 59.965 50.000 8.27 0.00 38.35 3.91
591 601 4.308526 AGCGAGGTGATTTGCTGG 57.691 55.556 0.00 0.00 36.45 4.85
592 602 1.679311 AGCGAGGTGATTTGCTGGA 59.321 52.632 0.00 0.00 36.45 3.86
593 603 0.254178 AGCGAGGTGATTTGCTGGAT 59.746 50.000 0.00 0.00 36.45 3.41
594 604 0.659957 GCGAGGTGATTTGCTGGATC 59.340 55.000 0.00 0.00 0.00 3.36
595 605 2.013563 GCGAGGTGATTTGCTGGATCA 61.014 52.381 0.00 0.00 0.00 2.92
600 610 1.747355 GTGATTTGCTGGATCACCTGG 59.253 52.381 13.31 0.00 44.76 4.45
601 611 1.355381 TGATTTGCTGGATCACCTGGT 59.645 47.619 0.00 0.00 35.96 4.00
602 612 1.747355 GATTTGCTGGATCACCTGGTG 59.253 52.381 20.86 20.86 35.96 4.17
603 613 0.895100 TTTGCTGGATCACCTGGTGC 60.895 55.000 22.02 9.71 35.96 5.01
604 614 2.066700 TTGCTGGATCACCTGGTGCA 62.067 55.000 22.02 12.35 35.96 4.57
605 615 1.748122 GCTGGATCACCTGGTGCAG 60.748 63.158 22.02 21.73 35.96 4.41
606 616 1.681666 CTGGATCACCTGGTGCAGT 59.318 57.895 22.02 10.17 37.04 4.40
607 617 0.037303 CTGGATCACCTGGTGCAGTT 59.963 55.000 22.02 6.54 37.04 3.16
608 618 0.478072 TGGATCACCTGGTGCAGTTT 59.522 50.000 22.02 4.07 37.04 2.66
609 619 1.702401 TGGATCACCTGGTGCAGTTTA 59.298 47.619 22.02 3.93 37.04 2.01
610 620 2.290260 TGGATCACCTGGTGCAGTTTAG 60.290 50.000 22.02 0.00 37.04 1.85
611 621 2.027192 GGATCACCTGGTGCAGTTTAGA 60.027 50.000 22.02 2.37 32.98 2.10
612 622 3.559171 GGATCACCTGGTGCAGTTTAGAA 60.559 47.826 22.02 1.60 32.98 2.10
613 623 3.788227 TCACCTGGTGCAGTTTAGAAT 57.212 42.857 22.02 0.00 32.98 2.40
614 624 3.674997 TCACCTGGTGCAGTTTAGAATC 58.325 45.455 22.02 0.00 32.98 2.52
615 625 2.416547 CACCTGGTGCAGTTTAGAATCG 59.583 50.000 14.87 0.00 0.00 3.34
616 626 2.301870 ACCTGGTGCAGTTTAGAATCGA 59.698 45.455 0.00 0.00 0.00 3.59
617 627 3.055094 ACCTGGTGCAGTTTAGAATCGAT 60.055 43.478 0.00 0.00 0.00 3.59
618 628 3.310774 CCTGGTGCAGTTTAGAATCGATG 59.689 47.826 0.00 0.00 0.00 3.84
619 629 3.270027 TGGTGCAGTTTAGAATCGATGG 58.730 45.455 0.00 0.00 0.00 3.51
620 630 2.614057 GGTGCAGTTTAGAATCGATGGG 59.386 50.000 0.00 0.00 0.00 4.00
621 631 3.531538 GTGCAGTTTAGAATCGATGGGA 58.468 45.455 0.00 0.00 0.00 4.37
622 632 3.309954 GTGCAGTTTAGAATCGATGGGAC 59.690 47.826 0.00 0.00 0.00 4.46
623 633 3.197766 TGCAGTTTAGAATCGATGGGACT 59.802 43.478 0.00 0.00 0.00 3.85
624 634 3.557595 GCAGTTTAGAATCGATGGGACTG 59.442 47.826 16.73 16.73 37.05 3.51
625 635 4.122776 CAGTTTAGAATCGATGGGACTGG 58.877 47.826 0.00 0.00 31.96 4.00
626 636 3.775316 AGTTTAGAATCGATGGGACTGGT 59.225 43.478 0.00 0.00 0.00 4.00
627 637 4.960469 AGTTTAGAATCGATGGGACTGGTA 59.040 41.667 0.00 0.00 0.00 3.25
628 638 5.602978 AGTTTAGAATCGATGGGACTGGTAT 59.397 40.000 0.00 0.00 0.00 2.73
629 639 6.099845 AGTTTAGAATCGATGGGACTGGTATT 59.900 38.462 0.00 0.00 0.00 1.89
630 640 6.494666 TTAGAATCGATGGGACTGGTATTT 57.505 37.500 0.00 0.00 0.00 1.40
631 641 5.373812 AGAATCGATGGGACTGGTATTTT 57.626 39.130 0.00 0.00 0.00 1.82
632 642 5.755849 AGAATCGATGGGACTGGTATTTTT 58.244 37.500 0.00 0.00 0.00 1.94
655 665 9.757227 TTTTTGTAGAATTTGTGGGAAAGTATG 57.243 29.630 0.00 0.00 0.00 2.39
656 666 8.472007 TTTGTAGAATTTGTGGGAAAGTATGT 57.528 30.769 0.00 0.00 0.00 2.29
657 667 8.472007 TTGTAGAATTTGTGGGAAAGTATGTT 57.528 30.769 0.00 0.00 0.00 2.71
658 668 8.472007 TGTAGAATTTGTGGGAAAGTATGTTT 57.528 30.769 0.00 0.00 0.00 2.83
659 669 9.575868 TGTAGAATTTGTGGGAAAGTATGTTTA 57.424 29.630 0.00 0.00 0.00 2.01
662 672 9.308000 AGAATTTGTGGGAAAGTATGTTTATGA 57.692 29.630 0.00 0.00 0.00 2.15
683 693 7.979444 ATGATTTTATAGGATTGGTACGGTG 57.021 36.000 0.00 0.00 0.00 4.94
684 694 7.127012 TGATTTTATAGGATTGGTACGGTGA 57.873 36.000 0.00 0.00 0.00 4.02
685 695 7.741785 TGATTTTATAGGATTGGTACGGTGAT 58.258 34.615 0.00 0.00 0.00 3.06
686 696 7.659799 TGATTTTATAGGATTGGTACGGTGATG 59.340 37.037 0.00 0.00 0.00 3.07
687 697 6.488769 TTTATAGGATTGGTACGGTGATGT 57.511 37.500 0.00 0.00 0.00 3.06
688 698 6.488769 TTATAGGATTGGTACGGTGATGTT 57.511 37.500 0.00 0.00 0.00 2.71
689 699 3.713826 AGGATTGGTACGGTGATGTTT 57.286 42.857 0.00 0.00 0.00 2.83
690 700 4.829872 AGGATTGGTACGGTGATGTTTA 57.170 40.909 0.00 0.00 0.00 2.01
691 701 5.367945 AGGATTGGTACGGTGATGTTTAT 57.632 39.130 0.00 0.00 0.00 1.40
692 702 6.488769 AGGATTGGTACGGTGATGTTTATA 57.511 37.500 0.00 0.00 0.00 0.98
693 703 7.074653 AGGATTGGTACGGTGATGTTTATAT 57.925 36.000 0.00 0.00 0.00 0.86
694 704 6.934645 AGGATTGGTACGGTGATGTTTATATG 59.065 38.462 0.00 0.00 0.00 1.78
695 705 5.994887 TTGGTACGGTGATGTTTATATGC 57.005 39.130 0.00 0.00 0.00 3.14
696 706 5.284861 TGGTACGGTGATGTTTATATGCT 57.715 39.130 0.00 0.00 0.00 3.79
697 707 5.053811 TGGTACGGTGATGTTTATATGCTG 58.946 41.667 0.00 0.00 0.00 4.41
698 708 5.163395 TGGTACGGTGATGTTTATATGCTGA 60.163 40.000 0.00 0.00 0.00 4.26
699 709 5.932303 GGTACGGTGATGTTTATATGCTGAT 59.068 40.000 0.00 0.00 0.00 2.90
700 710 6.426937 GGTACGGTGATGTTTATATGCTGATT 59.573 38.462 0.00 0.00 0.00 2.57
701 711 7.601130 GGTACGGTGATGTTTATATGCTGATTA 59.399 37.037 0.00 0.00 0.00 1.75
702 712 9.151471 GTACGGTGATGTTTATATGCTGATTAT 57.849 33.333 0.00 0.00 0.00 1.28
704 714 9.890629 ACGGTGATGTTTATATGCTGATTATAT 57.109 29.630 0.00 0.00 0.00 0.86
729 739 7.756395 AGATGGAATTCTAAGCATATGTTGG 57.244 36.000 5.23 0.44 0.00 3.77
730 740 7.520798 AGATGGAATTCTAAGCATATGTTGGA 58.479 34.615 5.23 2.76 0.00 3.53
731 741 7.664731 AGATGGAATTCTAAGCATATGTTGGAG 59.335 37.037 5.23 0.28 0.00 3.86
732 742 6.899089 TGGAATTCTAAGCATATGTTGGAGA 58.101 36.000 5.23 2.72 0.00 3.71
733 743 7.345691 TGGAATTCTAAGCATATGTTGGAGAA 58.654 34.615 15.20 15.20 0.00 2.87
734 744 7.833682 TGGAATTCTAAGCATATGTTGGAGAAA 59.166 33.333 16.21 3.40 0.00 2.52
735 745 8.854117 GGAATTCTAAGCATATGTTGGAGAAAT 58.146 33.333 16.21 10.92 0.00 2.17
738 748 8.806429 TTCTAAGCATATGTTGGAGAAATTGA 57.194 30.769 12.15 0.00 0.00 2.57
739 749 8.806429 TCTAAGCATATGTTGGAGAAATTGAA 57.194 30.769 4.29 0.00 0.00 2.69
740 750 8.896744 TCTAAGCATATGTTGGAGAAATTGAAG 58.103 33.333 4.29 0.00 0.00 3.02
741 751 6.461110 AGCATATGTTGGAGAAATTGAAGG 57.539 37.500 4.29 0.00 0.00 3.46
742 752 5.954150 AGCATATGTTGGAGAAATTGAAGGT 59.046 36.000 4.29 0.00 0.00 3.50
743 753 6.096001 AGCATATGTTGGAGAAATTGAAGGTC 59.904 38.462 4.29 0.00 0.00 3.85
744 754 6.096001 GCATATGTTGGAGAAATTGAAGGTCT 59.904 38.462 4.29 0.00 0.00 3.85
745 755 7.363268 GCATATGTTGGAGAAATTGAAGGTCTT 60.363 37.037 4.29 0.00 0.00 3.01
746 756 5.772825 TGTTGGAGAAATTGAAGGTCTTG 57.227 39.130 0.00 0.00 0.00 3.02
747 757 5.200483 TGTTGGAGAAATTGAAGGTCTTGT 58.800 37.500 0.00 0.00 0.00 3.16
748 758 6.361433 TGTTGGAGAAATTGAAGGTCTTGTA 58.639 36.000 0.00 0.00 0.00 2.41
749 759 7.004086 TGTTGGAGAAATTGAAGGTCTTGTAT 58.996 34.615 0.00 0.00 0.00 2.29
750 760 7.040478 TGTTGGAGAAATTGAAGGTCTTGTATG 60.040 37.037 0.00 0.00 0.00 2.39
751 761 6.542821 TGGAGAAATTGAAGGTCTTGTATGT 58.457 36.000 0.00 0.00 0.00 2.29
752 762 7.004086 TGGAGAAATTGAAGGTCTTGTATGTT 58.996 34.615 0.00 0.00 0.00 2.71
753 763 7.040478 TGGAGAAATTGAAGGTCTTGTATGTTG 60.040 37.037 0.00 0.00 0.00 3.33
754 764 6.681777 AGAAATTGAAGGTCTTGTATGTTGC 58.318 36.000 0.00 0.00 0.00 4.17
755 765 6.265196 AGAAATTGAAGGTCTTGTATGTTGCA 59.735 34.615 0.00 0.00 0.00 4.08
756 766 6.403866 AATTGAAGGTCTTGTATGTTGCAA 57.596 33.333 0.00 0.00 0.00 4.08
757 767 6.594788 ATTGAAGGTCTTGTATGTTGCAAT 57.405 33.333 0.59 0.00 0.00 3.56
758 768 5.375417 TGAAGGTCTTGTATGTTGCAATG 57.625 39.130 0.59 0.00 0.00 2.82
759 769 4.826733 TGAAGGTCTTGTATGTTGCAATGT 59.173 37.500 0.59 0.00 0.00 2.71
760 770 6.000840 TGAAGGTCTTGTATGTTGCAATGTA 58.999 36.000 0.59 0.00 0.00 2.29
761 771 5.880054 AGGTCTTGTATGTTGCAATGTAC 57.120 39.130 0.59 9.63 0.00 2.90
762 772 5.560724 AGGTCTTGTATGTTGCAATGTACT 58.439 37.500 18.85 1.66 0.00 2.73
763 773 6.003950 AGGTCTTGTATGTTGCAATGTACTT 58.996 36.000 18.85 3.64 0.00 2.24
764 774 6.149474 AGGTCTTGTATGTTGCAATGTACTTC 59.851 38.462 18.85 1.01 0.00 3.01
765 775 6.314784 GTCTTGTATGTTGCAATGTACTTCC 58.685 40.000 18.85 0.39 0.00 3.46
766 776 6.000840 TCTTGTATGTTGCAATGTACTTCCA 58.999 36.000 18.85 5.45 0.00 3.53
767 777 6.658816 TCTTGTATGTTGCAATGTACTTCCAT 59.341 34.615 18.85 11.17 0.00 3.41
768 778 6.832520 TGTATGTTGCAATGTACTTCCATT 57.167 33.333 18.85 0.00 35.45 3.16
769 779 7.225784 TGTATGTTGCAATGTACTTCCATTT 57.774 32.000 18.85 0.00 32.81 2.32
770 780 8.341892 TGTATGTTGCAATGTACTTCCATTTA 57.658 30.769 18.85 2.00 32.81 1.40
771 781 8.458052 TGTATGTTGCAATGTACTTCCATTTAG 58.542 33.333 18.85 0.00 32.81 1.85
772 782 6.892658 TGTTGCAATGTACTTCCATTTAGT 57.107 33.333 0.59 0.00 32.81 2.24
773 783 7.283625 TGTTGCAATGTACTTCCATTTAGTT 57.716 32.000 0.59 0.00 32.81 2.24
774 784 7.144661 TGTTGCAATGTACTTCCATTTAGTTG 58.855 34.615 0.59 0.00 32.81 3.16
775 785 6.892658 TGCAATGTACTTCCATTTAGTTGT 57.107 33.333 0.00 0.00 32.81 3.32
776 786 7.283625 TGCAATGTACTTCCATTTAGTTGTT 57.716 32.000 0.00 0.00 32.81 2.83
777 787 8.397575 TGCAATGTACTTCCATTTAGTTGTTA 57.602 30.769 0.00 0.00 32.81 2.41
778 788 8.511321 TGCAATGTACTTCCATTTAGTTGTTAG 58.489 33.333 0.00 0.00 32.81 2.34
779 789 8.512138 GCAATGTACTTCCATTTAGTTGTTAGT 58.488 33.333 0.00 0.00 32.81 2.24
795 805 8.941995 AGTTGTTAGTATAGATGATGCCTAGA 57.058 34.615 0.00 0.00 0.00 2.43
796 806 8.798402 AGTTGTTAGTATAGATGATGCCTAGAC 58.202 37.037 0.00 0.00 0.00 2.59
797 807 8.798402 GTTGTTAGTATAGATGATGCCTAGACT 58.202 37.037 0.00 0.00 40.49 3.24
798 808 8.941995 TGTTAGTATAGATGATGCCTAGACTT 57.058 34.615 0.00 0.00 38.90 3.01
808 818 8.874156 AGATGATGCCTAGACTTATTTACATCA 58.126 33.333 0.00 0.00 44.61 3.07
809 819 9.494271 GATGATGCCTAGACTTATTTACATCAA 57.506 33.333 6.46 0.00 43.96 2.57
811 821 9.276590 TGATGCCTAGACTTATTTACATCAATG 57.723 33.333 0.00 0.00 39.57 2.82
812 822 7.496529 TGCCTAGACTTATTTACATCAATGC 57.503 36.000 0.00 0.00 0.00 3.56
813 823 6.486657 TGCCTAGACTTATTTACATCAATGCC 59.513 38.462 0.00 0.00 0.00 4.40
814 824 6.712547 GCCTAGACTTATTTACATCAATGCCT 59.287 38.462 0.00 0.00 0.00 4.75
815 825 7.878127 GCCTAGACTTATTTACATCAATGCCTA 59.122 37.037 0.00 0.00 0.00 3.93
816 826 9.429359 CCTAGACTTATTTACATCAATGCCTAG 57.571 37.037 0.00 0.00 0.00 3.02
817 827 9.988815 CTAGACTTATTTACATCAATGCCTAGT 57.011 33.333 0.00 0.00 0.00 2.57
819 829 9.331282 AGACTTATTTACATCAATGCCTAGTTC 57.669 33.333 0.00 0.00 0.00 3.01
820 830 9.331282 GACTTATTTACATCAATGCCTAGTTCT 57.669 33.333 0.00 0.00 0.00 3.01
821 831 9.686683 ACTTATTTACATCAATGCCTAGTTCTT 57.313 29.630 0.00 0.00 0.00 2.52
825 835 5.064441 ACATCAATGCCTAGTTCTTTTGC 57.936 39.130 0.00 0.00 0.00 3.68
826 836 4.523943 ACATCAATGCCTAGTTCTTTTGCA 59.476 37.500 0.00 0.00 36.23 4.08
827 837 5.186409 ACATCAATGCCTAGTTCTTTTGCAT 59.814 36.000 0.00 0.00 44.02 3.96
828 838 6.377996 ACATCAATGCCTAGTTCTTTTGCATA 59.622 34.615 0.00 0.00 41.49 3.14
829 839 7.069085 ACATCAATGCCTAGTTCTTTTGCATAT 59.931 33.333 0.00 0.00 41.49 1.78
830 840 6.798482 TCAATGCCTAGTTCTTTTGCATATG 58.202 36.000 0.00 0.00 41.49 1.78
831 841 6.602803 TCAATGCCTAGTTCTTTTGCATATGA 59.397 34.615 6.97 0.00 41.49 2.15
832 842 5.818136 TGCCTAGTTCTTTTGCATATGAC 57.182 39.130 6.97 0.00 0.00 3.06
833 843 4.640201 TGCCTAGTTCTTTTGCATATGACC 59.360 41.667 6.97 0.00 0.00 4.02
834 844 4.640201 GCCTAGTTCTTTTGCATATGACCA 59.360 41.667 6.97 0.00 0.00 4.02
835 845 5.220931 GCCTAGTTCTTTTGCATATGACCAG 60.221 44.000 6.97 0.00 0.00 4.00
836 846 5.882557 CCTAGTTCTTTTGCATATGACCAGT 59.117 40.000 6.97 0.00 0.00 4.00
837 847 7.047891 CCTAGTTCTTTTGCATATGACCAGTA 58.952 38.462 6.97 0.00 0.00 2.74
838 848 7.716998 CCTAGTTCTTTTGCATATGACCAGTAT 59.283 37.037 6.97 0.00 0.00 2.12
839 849 9.764363 CTAGTTCTTTTGCATATGACCAGTATA 57.236 33.333 6.97 0.00 0.00 1.47
841 851 9.461312 AGTTCTTTTGCATATGACCAGTATAAA 57.539 29.630 6.97 0.00 0.00 1.40
842 852 9.503427 GTTCTTTTGCATATGACCAGTATAAAC 57.497 33.333 6.97 0.00 0.00 2.01
843 853 8.800370 TCTTTTGCATATGACCAGTATAAACA 57.200 30.769 6.97 0.00 0.00 2.83
844 854 9.237187 TCTTTTGCATATGACCAGTATAAACAA 57.763 29.630 6.97 0.00 0.00 2.83
845 855 9.289303 CTTTTGCATATGACCAGTATAAACAAC 57.711 33.333 6.97 0.00 0.00 3.32
846 856 6.935741 TGCATATGACCAGTATAAACAACC 57.064 37.500 6.97 0.00 0.00 3.77
847 857 6.418946 TGCATATGACCAGTATAAACAACCA 58.581 36.000 6.97 0.00 0.00 3.67
848 858 7.059788 TGCATATGACCAGTATAAACAACCAT 58.940 34.615 6.97 0.00 0.00 3.55
849 859 7.559533 TGCATATGACCAGTATAAACAACCATT 59.440 33.333 6.97 0.00 0.00 3.16
850 860 7.862372 GCATATGACCAGTATAAACAACCATTG 59.138 37.037 6.97 0.00 0.00 2.82
851 861 6.773976 ATGACCAGTATAAACAACCATTGG 57.226 37.500 0.00 0.00 34.12 3.16
852 862 5.636123 TGACCAGTATAAACAACCATTGGT 58.364 37.500 1.37 1.37 40.18 3.67
853 863 5.475220 TGACCAGTATAAACAACCATTGGTG 59.525 40.000 9.62 6.43 37.78 4.17
854 864 4.219725 ACCAGTATAAACAACCATTGGTGC 59.780 41.667 9.62 0.00 36.41 5.01
855 865 4.411327 CAGTATAAACAACCATTGGTGCG 58.589 43.478 9.62 6.54 35.34 5.34
856 866 4.076394 AGTATAAACAACCATTGGTGCGT 58.924 39.130 9.62 7.22 35.34 5.24
857 867 3.569250 ATAAACAACCATTGGTGCGTC 57.431 42.857 9.62 0.00 35.34 5.19
858 868 0.387565 AAACAACCATTGGTGCGTCC 59.612 50.000 9.62 0.00 35.34 4.79
859 869 0.753479 AACAACCATTGGTGCGTCCA 60.753 50.000 9.62 0.00 45.60 4.02
905 915 2.616458 GCCCACCTCCCCATCAAGT 61.616 63.158 0.00 0.00 0.00 3.16
907 917 1.522900 CCCACCTCCCCATCAAGTAT 58.477 55.000 0.00 0.00 0.00 2.12
908 918 2.701551 CCCACCTCCCCATCAAGTATA 58.298 52.381 0.00 0.00 0.00 1.47
909 919 2.639839 CCCACCTCCCCATCAAGTATAG 59.360 54.545 0.00 0.00 0.00 1.31
910 920 3.587498 CCACCTCCCCATCAAGTATAGA 58.413 50.000 0.00 0.00 0.00 1.98
911 921 4.171234 CCACCTCCCCATCAAGTATAGAT 58.829 47.826 0.00 0.00 0.00 1.98
912 922 4.019860 CCACCTCCCCATCAAGTATAGATG 60.020 50.000 0.00 0.00 41.91 2.90
913 923 4.840680 CACCTCCCCATCAAGTATAGATGA 59.159 45.833 4.84 0.00 44.34 2.92
914 924 5.486775 CACCTCCCCATCAAGTATAGATGAT 59.513 44.000 4.84 0.00 44.34 2.45
1049 3916 2.333014 GGAGCTCGTGAAGAAGAACAG 58.667 52.381 7.83 0.00 0.00 3.16
1077 3947 1.825090 TGATCAAGCAGTTCGGCAAT 58.175 45.000 0.00 0.00 35.83 3.56
1236 4108 0.187117 TGGGGCTGATGTGGTTTCAA 59.813 50.000 0.00 0.00 0.00 2.69
1244 4116 1.340889 GATGTGGTTTCAAGCTTGGCA 59.659 47.619 25.73 10.70 0.00 4.92
1288 4160 1.406065 CCATCAGCGGGAGAGGACAT 61.406 60.000 0.00 0.00 0.00 3.06
1363 4253 1.609841 CCAGCACAAGACTCTGATGCA 60.610 52.381 14.35 0.00 38.79 3.96
1415 4305 5.183969 GTCAAGAACCAGGTATTAACTCCC 58.816 45.833 0.00 0.00 0.00 4.30
1516 4406 1.421268 AGTTCAGAGTTGTGGCATGGA 59.579 47.619 0.00 0.00 0.00 3.41
1519 4409 3.159213 TCAGAGTTGTGGCATGGAATT 57.841 42.857 0.00 0.00 0.00 2.17
1593 4484 2.871022 CAACCATCAGATGCAGTAGCTC 59.129 50.000 4.68 0.00 42.74 4.09
1603 4494 0.251634 GCAGTAGCTCCTCCTGCTTT 59.748 55.000 16.10 0.00 46.23 3.51
1617 4508 1.079127 GCTTTCTACTCCGCTGCCA 60.079 57.895 0.00 0.00 0.00 4.92
1658 4549 3.948473 CTGCTCCTGCTAGTTAGTCACTA 59.052 47.826 0.00 0.00 40.48 2.74
1664 4555 4.882427 CCTGCTAGTTAGTCACTACTGCTA 59.118 45.833 0.00 0.00 36.88 3.49
1686 4577 4.026744 ACTCCTAAGCACTGCTCATAGAA 58.973 43.478 3.40 0.00 38.25 2.10
1690 4581 3.347077 AAGCACTGCTCATAGAAGCTT 57.653 42.857 3.40 0.00 42.94 3.74
1788 6046 6.349300 TCTATTGGTCCTGCTTATTGTCTTC 58.651 40.000 0.00 0.00 0.00 2.87
1863 6291 6.016192 TCAGTAACAGTTGTGTCTCTTAGAGG 60.016 42.308 9.58 0.00 35.08 3.69
1930 6409 7.602644 TCCATACTTCTGTTAGCTACAACAAAG 59.397 37.037 15.34 15.34 37.93 2.77
1932 6412 8.651588 CATACTTCTGTTAGCTACAACAAAGAG 58.348 37.037 19.74 13.19 37.93 2.85
1962 6443 6.700960 TGAATTTGGTACTGCATGAGTTTTTG 59.299 34.615 0.00 0.00 35.96 2.44
2026 6514 4.808895 CGATTTTGTATGCACTGCTACCTA 59.191 41.667 1.98 0.00 0.00 3.08
2035 6523 2.555199 CACTGCTACCTAATGAGTGCC 58.445 52.381 0.00 0.00 0.00 5.01
2279 6773 0.380733 CTGTGCGCATCATCAAGCAT 59.619 50.000 15.91 0.00 41.88 3.79
2330 6824 7.015682 ACCGATGGTAACTCAATCTAGATCATT 59.984 37.037 5.51 1.33 32.11 2.57
2372 6866 7.391554 ACATTTGTGATGTTAGTATGCTTCTGT 59.608 33.333 0.00 0.00 0.00 3.41
2419 6913 3.452264 TCCTAGCTGTGCATGTTGTAGAT 59.548 43.478 0.00 0.00 0.00 1.98
2424 6918 4.279169 AGCTGTGCATGTTGTAGATTGTTT 59.721 37.500 0.00 0.00 0.00 2.83
2525 7023 6.499106 ACTATGTGTAATGGATCCATGACA 57.501 37.500 33.28 33.28 43.45 3.58
2527 7025 6.938596 ACTATGTGTAATGGATCCATGACATG 59.061 38.462 37.13 28.69 46.14 3.21
2649 7154 4.219115 TGCCAGGTGAAGGTTTTCAAATA 58.781 39.130 0.00 0.00 44.49 1.40
2653 7158 6.165577 CCAGGTGAAGGTTTTCAAATATTGG 58.834 40.000 0.00 0.00 44.49 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 0.039437 GTTGAGCTTCTCGGTGTCGA 60.039 55.000 0.00 0.00 43.86 4.20
82 83 2.048127 GCCGTTGAGCTTCTCGGT 60.048 61.111 19.76 0.00 44.07 4.69
184 185 3.532155 CGAGCGGAGGGAGAAGGG 61.532 72.222 0.00 0.00 0.00 3.95
232 239 5.202004 ACAACCCTAGTAGATTCAGATCGT 58.798 41.667 0.00 0.00 37.37 3.73
245 252 1.318576 GCAACAGCAACAACCCTAGT 58.681 50.000 0.00 0.00 0.00 2.57
246 253 1.317613 TGCAACAGCAACAACCCTAG 58.682 50.000 0.00 0.00 34.85 3.02
285 295 1.079621 TGGCCCGGTTCTTCTCCTA 59.920 57.895 0.00 0.00 0.00 2.94
314 324 0.602372 GGAGGATCTCGGCATTGAGC 60.602 60.000 0.00 0.00 37.74 4.26
315 325 0.319383 CGGAGGATCTCGGCATTGAG 60.319 60.000 0.00 0.00 37.33 3.02
316 326 1.742146 CGGAGGATCTCGGCATTGA 59.258 57.895 0.00 0.00 33.73 2.57
317 327 4.350620 CGGAGGATCTCGGCATTG 57.649 61.111 0.00 0.00 33.73 2.82
322 332 3.716539 TTTGCGCGGAGGATCTCGG 62.717 63.158 8.83 0.00 33.24 4.63
323 333 2.202743 TTTGCGCGGAGGATCTCG 60.203 61.111 8.83 0.00 35.05 4.04
324 334 1.884926 CCTTTGCGCGGAGGATCTC 60.885 63.158 20.74 0.00 34.91 2.75
325 335 2.187946 CCTTTGCGCGGAGGATCT 59.812 61.111 20.74 0.00 34.91 2.75
326 336 3.577313 GCCTTTGCGCGGAGGATC 61.577 66.667 27.26 10.85 34.91 3.36
330 340 4.107051 CTTGGCCTTTGCGCGGAG 62.107 66.667 8.83 2.41 38.85 4.63
333 343 4.766088 GAGCTTGGCCTTTGCGCG 62.766 66.667 3.32 0.00 38.85 6.86
334 344 4.426112 GGAGCTTGGCCTTTGCGC 62.426 66.667 3.32 0.00 38.85 6.09
335 345 2.674380 AGGAGCTTGGCCTTTGCG 60.674 61.111 3.32 0.00 38.85 4.85
336 346 2.694760 CGAGGAGCTTGGCCTTTGC 61.695 63.158 3.32 5.63 35.44 3.68
337 347 1.003355 TCGAGGAGCTTGGCCTTTG 60.003 57.895 3.32 0.00 35.44 2.77
338 348 1.298014 CTCGAGGAGCTTGGCCTTT 59.702 57.895 3.32 0.00 35.44 3.11
339 349 2.664081 CCTCGAGGAGCTTGGCCTT 61.664 63.158 28.21 0.00 35.44 4.35
340 350 3.080121 CCTCGAGGAGCTTGGCCT 61.080 66.667 28.21 0.00 38.81 5.19
341 351 3.077556 TCCTCGAGGAGCTTGGCC 61.078 66.667 30.49 0.00 39.78 5.36
351 361 3.151022 GGGCAGGTCCTCCTCGAG 61.151 72.222 5.13 5.13 43.07 4.04
352 362 3.539593 TTGGGCAGGTCCTCCTCGA 62.540 63.158 0.00 0.00 43.07 4.04
353 363 3.003173 TTGGGCAGGTCCTCCTCG 61.003 66.667 0.00 0.00 43.07 4.63
354 364 2.993853 CTTGGGCAGGTCCTCCTC 59.006 66.667 0.00 0.00 43.07 3.71
355 365 3.334054 GCTTGGGCAGGTCCTCCT 61.334 66.667 0.00 0.00 46.37 3.69
356 366 3.334054 AGCTTGGGCAGGTCCTCC 61.334 66.667 0.00 0.00 41.70 4.30
357 367 2.045536 CAGCTTGGGCAGGTCCTC 60.046 66.667 0.00 0.00 41.70 3.71
358 368 4.357279 GCAGCTTGGGCAGGTCCT 62.357 66.667 0.00 0.00 41.70 3.85
359 369 4.666253 TGCAGCTTGGGCAGGTCC 62.666 66.667 0.00 0.00 41.70 4.46
366 376 3.060615 GAGGCACTGCAGCTTGGG 61.061 66.667 15.27 0.00 41.55 4.12
367 377 3.429141 CGAGGCACTGCAGCTTGG 61.429 66.667 15.27 1.98 41.55 3.61
368 378 4.099170 GCGAGGCACTGCAGCTTG 62.099 66.667 15.27 6.81 41.55 4.01
369 379 4.631247 TGCGAGGCACTGCAGCTT 62.631 61.111 15.27 0.00 41.55 3.74
378 388 1.004560 CCTTCTTGAGTGCGAGGCA 60.005 57.895 0.00 0.00 35.60 4.75
379 389 1.004440 ACCTTCTTGAGTGCGAGGC 60.004 57.895 0.00 0.00 0.00 4.70
380 390 0.390472 GGACCTTCTTGAGTGCGAGG 60.390 60.000 0.00 0.00 0.00 4.63
381 391 3.129792 GGACCTTCTTGAGTGCGAG 57.870 57.895 0.00 0.00 0.00 5.03
383 393 3.862124 CGGACCTTCTTGAGTGCG 58.138 61.111 0.00 0.00 41.34 5.34
384 394 0.670854 GGACGGACCTTCTTGAGTGC 60.671 60.000 0.00 0.00 35.41 4.40
385 395 0.679505 TGGACGGACCTTCTTGAGTG 59.320 55.000 0.00 0.00 39.86 3.51
386 396 1.420430 TTGGACGGACCTTCTTGAGT 58.580 50.000 0.00 0.00 39.86 3.41
387 397 2.028112 TGATTGGACGGACCTTCTTGAG 60.028 50.000 0.00 0.00 39.86 3.02
388 398 1.974957 TGATTGGACGGACCTTCTTGA 59.025 47.619 0.00 0.00 39.86 3.02
389 399 2.472695 TGATTGGACGGACCTTCTTG 57.527 50.000 0.00 0.00 39.86 3.02
390 400 2.840651 AGATGATTGGACGGACCTTCTT 59.159 45.455 0.00 0.00 39.86 2.52
391 401 2.432510 GAGATGATTGGACGGACCTTCT 59.567 50.000 0.00 0.00 39.86 2.85
392 402 2.432510 AGAGATGATTGGACGGACCTTC 59.567 50.000 0.00 0.00 39.86 3.46
393 403 2.169352 CAGAGATGATTGGACGGACCTT 59.831 50.000 0.00 0.00 39.86 3.50
394 404 1.759445 CAGAGATGATTGGACGGACCT 59.241 52.381 0.00 0.00 39.86 3.85
395 405 1.808133 GCAGAGATGATTGGACGGACC 60.808 57.143 0.00 0.00 39.54 4.46
396 406 1.576356 GCAGAGATGATTGGACGGAC 58.424 55.000 0.00 0.00 0.00 4.79
397 407 0.103026 CGCAGAGATGATTGGACGGA 59.897 55.000 0.00 0.00 0.00 4.69
398 408 1.493950 GCGCAGAGATGATTGGACGG 61.494 60.000 0.30 0.00 0.00 4.79
399 409 0.529337 AGCGCAGAGATGATTGGACG 60.529 55.000 11.47 0.00 0.00 4.79
400 410 0.935898 CAGCGCAGAGATGATTGGAC 59.064 55.000 11.47 0.00 38.85 4.02
401 411 0.826062 TCAGCGCAGAGATGATTGGA 59.174 50.000 11.47 0.00 40.80 3.53
402 412 3.374506 TCAGCGCAGAGATGATTGG 57.625 52.632 11.47 0.00 40.80 3.16
406 416 2.895680 GGGTCAGCGCAGAGATGA 59.104 61.111 11.47 0.00 43.84 2.92
407 417 2.584418 CGGGTCAGCGCAGAGATG 60.584 66.667 11.47 0.00 37.65 2.90
408 418 4.521062 GCGGGTCAGCGCAGAGAT 62.521 66.667 11.47 0.00 0.00 2.75
410 420 3.764810 CTAGCGGGTCAGCGCAGAG 62.765 68.421 11.47 0.00 43.00 3.35
411 421 3.826754 CTAGCGGGTCAGCGCAGA 61.827 66.667 11.47 3.41 43.00 4.26
412 422 3.144120 ATCTAGCGGGTCAGCGCAG 62.144 63.158 11.47 0.00 43.00 5.18
413 423 3.138930 GATCTAGCGGGTCAGCGCA 62.139 63.158 11.47 0.00 43.00 6.09
414 424 2.355244 GATCTAGCGGGTCAGCGC 60.355 66.667 0.00 0.00 43.00 5.92
415 425 1.007964 CAGATCTAGCGGGTCAGCG 60.008 63.158 0.00 0.00 43.00 5.18
416 426 1.300542 GCAGATCTAGCGGGTCAGC 60.301 63.158 0.00 0.00 37.41 4.26
417 427 0.749649 AAGCAGATCTAGCGGGTCAG 59.250 55.000 0.00 0.00 37.01 3.51
418 428 0.747255 GAAGCAGATCTAGCGGGTCA 59.253 55.000 0.00 0.00 37.01 4.02
419 429 1.036707 AGAAGCAGATCTAGCGGGTC 58.963 55.000 0.00 3.28 37.01 4.46
420 430 1.410882 GAAGAAGCAGATCTAGCGGGT 59.589 52.381 0.00 0.00 37.01 5.28
421 431 1.686052 AGAAGAAGCAGATCTAGCGGG 59.314 52.381 0.00 0.00 37.01 6.13
422 432 2.100584 ACAGAAGAAGCAGATCTAGCGG 59.899 50.000 0.00 0.00 37.01 5.52
423 433 3.114809 CACAGAAGAAGCAGATCTAGCG 58.885 50.000 0.00 0.00 37.01 4.26
424 434 3.456280 CCACAGAAGAAGCAGATCTAGC 58.544 50.000 0.00 1.69 0.00 3.42
425 435 3.456280 GCCACAGAAGAAGCAGATCTAG 58.544 50.000 0.00 0.00 0.00 2.43
426 436 2.169352 GGCCACAGAAGAAGCAGATCTA 59.831 50.000 0.00 0.00 0.00 1.98
427 437 1.065564 GGCCACAGAAGAAGCAGATCT 60.066 52.381 0.00 0.00 0.00 2.75
428 438 1.377536 GGCCACAGAAGAAGCAGATC 58.622 55.000 0.00 0.00 0.00 2.75
429 439 0.392193 CGGCCACAGAAGAAGCAGAT 60.392 55.000 2.24 0.00 0.00 2.90
430 440 1.004560 CGGCCACAGAAGAAGCAGA 60.005 57.895 2.24 0.00 0.00 4.26
431 441 2.684843 GCGGCCACAGAAGAAGCAG 61.685 63.158 2.24 0.00 0.00 4.24
432 442 1.826340 TAGCGGCCACAGAAGAAGCA 61.826 55.000 2.24 0.00 0.00 3.91
433 443 1.079127 TAGCGGCCACAGAAGAAGC 60.079 57.895 2.24 0.00 0.00 3.86
434 444 0.460987 CCTAGCGGCCACAGAAGAAG 60.461 60.000 2.24 0.00 0.00 2.85
435 445 0.902984 TCCTAGCGGCCACAGAAGAA 60.903 55.000 2.24 0.00 0.00 2.52
436 446 1.304962 TCCTAGCGGCCACAGAAGA 60.305 57.895 2.24 0.00 0.00 2.87
437 447 1.153549 GTCCTAGCGGCCACAGAAG 60.154 63.158 2.24 0.00 0.00 2.85
438 448 1.192146 AAGTCCTAGCGGCCACAGAA 61.192 55.000 2.24 0.00 0.00 3.02
439 449 1.609501 AAGTCCTAGCGGCCACAGA 60.610 57.895 2.24 0.00 0.00 3.41
440 450 1.448540 CAAGTCCTAGCGGCCACAG 60.449 63.158 2.24 0.00 0.00 3.66
441 451 2.662596 CAAGTCCTAGCGGCCACA 59.337 61.111 2.24 0.00 0.00 4.17
442 452 1.956629 TAGCAAGTCCTAGCGGCCAC 61.957 60.000 2.24 0.00 35.48 5.01
443 453 1.048724 ATAGCAAGTCCTAGCGGCCA 61.049 55.000 2.24 0.00 35.48 5.36
444 454 0.319986 GATAGCAAGTCCTAGCGGCC 60.320 60.000 0.00 0.00 35.48 6.13
445 455 0.319986 GGATAGCAAGTCCTAGCGGC 60.320 60.000 0.00 0.00 35.48 6.53
446 456 1.040646 TGGATAGCAAGTCCTAGCGG 58.959 55.000 4.08 0.00 36.68 5.52
447 457 2.036475 ACATGGATAGCAAGTCCTAGCG 59.964 50.000 0.00 0.00 36.68 4.26
448 458 3.760580 ACATGGATAGCAAGTCCTAGC 57.239 47.619 0.00 0.00 36.68 3.42
449 459 5.028549 ACAACATGGATAGCAAGTCCTAG 57.971 43.478 0.00 0.00 36.68 3.02
450 460 5.435686 AACAACATGGATAGCAAGTCCTA 57.564 39.130 0.00 0.00 36.68 2.94
451 461 4.307032 AACAACATGGATAGCAAGTCCT 57.693 40.909 0.00 0.00 36.68 3.85
452 462 5.648092 AGTAAACAACATGGATAGCAAGTCC 59.352 40.000 0.00 0.00 36.26 3.85
453 463 6.743575 AGTAAACAACATGGATAGCAAGTC 57.256 37.500 0.00 0.00 0.00 3.01
454 464 6.316390 GCTAGTAAACAACATGGATAGCAAGT 59.684 38.462 0.00 0.00 35.58 3.16
455 465 6.316140 TGCTAGTAAACAACATGGATAGCAAG 59.684 38.462 0.00 0.00 40.84 4.01
456 466 6.176896 TGCTAGTAAACAACATGGATAGCAA 58.823 36.000 0.00 0.00 40.84 3.91
457 467 5.739959 TGCTAGTAAACAACATGGATAGCA 58.260 37.500 0.00 0.00 41.35 3.49
458 468 5.277538 GCTGCTAGTAAACAACATGGATAGC 60.278 44.000 0.00 0.00 35.96 2.97
459 469 5.817296 TGCTGCTAGTAAACAACATGGATAG 59.183 40.000 0.00 0.00 0.00 2.08
460 470 5.739959 TGCTGCTAGTAAACAACATGGATA 58.260 37.500 0.00 0.00 0.00 2.59
461 471 4.588899 TGCTGCTAGTAAACAACATGGAT 58.411 39.130 0.00 0.00 0.00 3.41
462 472 4.014569 TGCTGCTAGTAAACAACATGGA 57.985 40.909 0.00 0.00 0.00 3.41
463 473 4.764679 TTGCTGCTAGTAAACAACATGG 57.235 40.909 0.00 0.00 0.00 3.66
464 474 6.437928 TCTTTTGCTGCTAGTAAACAACATG 58.562 36.000 0.00 0.00 29.65 3.21
465 475 6.294176 CCTCTTTTGCTGCTAGTAAACAACAT 60.294 38.462 0.00 0.00 29.65 2.71
466 476 5.008613 CCTCTTTTGCTGCTAGTAAACAACA 59.991 40.000 0.00 0.00 29.65 3.33
467 477 5.452777 CCTCTTTTGCTGCTAGTAAACAAC 58.547 41.667 0.00 0.00 29.65 3.32
468 478 4.023193 GCCTCTTTTGCTGCTAGTAAACAA 60.023 41.667 0.00 0.00 29.65 2.83
469 479 3.502211 GCCTCTTTTGCTGCTAGTAAACA 59.498 43.478 0.00 0.00 29.65 2.83
470 480 3.753797 AGCCTCTTTTGCTGCTAGTAAAC 59.246 43.478 0.00 0.00 37.76 2.01
471 481 4.021102 AGCCTCTTTTGCTGCTAGTAAA 57.979 40.909 0.00 0.00 37.76 2.01
472 482 3.703001 AGCCTCTTTTGCTGCTAGTAA 57.297 42.857 0.00 0.00 37.76 2.24
473 483 4.392921 CTAGCCTCTTTTGCTGCTAGTA 57.607 45.455 8.77 0.00 45.16 1.82
474 484 3.258971 CTAGCCTCTTTTGCTGCTAGT 57.741 47.619 8.77 0.00 45.16 2.57
476 486 1.556911 AGCTAGCCTCTTTTGCTGCTA 59.443 47.619 12.13 0.00 39.61 3.49
477 487 0.327591 AGCTAGCCTCTTTTGCTGCT 59.672 50.000 12.13 0.00 39.91 4.24
478 488 1.172175 AAGCTAGCCTCTTTTGCTGC 58.828 50.000 12.13 0.00 39.91 5.25
479 489 2.680339 GGTAAGCTAGCCTCTTTTGCTG 59.320 50.000 12.13 0.00 39.91 4.41
480 490 2.573915 AGGTAAGCTAGCCTCTTTTGCT 59.426 45.455 12.13 0.00 42.81 3.91
481 491 2.992593 AGGTAAGCTAGCCTCTTTTGC 58.007 47.619 12.13 1.98 0.00 3.68
482 492 4.579869 TCAAGGTAAGCTAGCCTCTTTTG 58.420 43.478 12.13 11.29 33.24 2.44
483 493 4.910458 TCAAGGTAAGCTAGCCTCTTTT 57.090 40.909 12.13 0.72 33.24 2.27
484 494 4.323868 CCTTCAAGGTAAGCTAGCCTCTTT 60.324 45.833 12.13 1.15 33.24 2.52
485 495 3.198853 CCTTCAAGGTAAGCTAGCCTCTT 59.801 47.826 12.13 7.33 33.24 2.85
486 496 2.769095 CCTTCAAGGTAAGCTAGCCTCT 59.231 50.000 12.13 0.81 33.24 3.69
487 497 2.766828 TCCTTCAAGGTAAGCTAGCCTC 59.233 50.000 12.13 1.80 36.53 4.70
488 498 2.769095 CTCCTTCAAGGTAAGCTAGCCT 59.231 50.000 12.13 0.00 36.53 4.58
489 499 2.766828 TCTCCTTCAAGGTAAGCTAGCC 59.233 50.000 12.13 0.00 36.53 3.93
490 500 3.449377 AGTCTCCTTCAAGGTAAGCTAGC 59.551 47.826 6.62 6.62 36.53 3.42
491 501 4.679372 GCAGTCTCCTTCAAGGTAAGCTAG 60.679 50.000 2.50 0.00 36.53 3.42
492 502 3.195825 GCAGTCTCCTTCAAGGTAAGCTA 59.804 47.826 2.50 0.00 36.53 3.32
493 503 2.027653 GCAGTCTCCTTCAAGGTAAGCT 60.028 50.000 2.50 0.00 36.53 3.74
494 504 2.351455 GCAGTCTCCTTCAAGGTAAGC 58.649 52.381 2.50 0.00 36.53 3.09
495 505 2.569404 AGGCAGTCTCCTTCAAGGTAAG 59.431 50.000 2.50 0.00 36.53 2.34
496 506 2.621070 AGGCAGTCTCCTTCAAGGTAA 58.379 47.619 2.50 0.00 36.53 2.85
497 507 2.327325 AGGCAGTCTCCTTCAAGGTA 57.673 50.000 2.50 0.00 36.53 3.08
498 508 2.327325 TAGGCAGTCTCCTTCAAGGT 57.673 50.000 2.50 0.00 37.66 3.50
499 509 3.703001 TTTAGGCAGTCTCCTTCAAGG 57.297 47.619 0.00 0.00 37.66 3.61
500 510 6.317391 CCTAAATTTAGGCAGTCTCCTTCAAG 59.683 42.308 27.22 2.66 43.43 3.02
501 511 6.180472 CCTAAATTTAGGCAGTCTCCTTCAA 58.820 40.000 27.22 0.00 43.43 2.69
502 512 5.745227 CCTAAATTTAGGCAGTCTCCTTCA 58.255 41.667 27.22 0.00 43.43 3.02
515 525 1.375551 ACCGCGCACCCTAAATTTAG 58.624 50.000 16.90 16.90 0.00 1.85
516 526 1.469308 CAACCGCGCACCCTAAATTTA 59.531 47.619 8.75 0.00 0.00 1.40
517 527 0.242555 CAACCGCGCACCCTAAATTT 59.757 50.000 8.75 0.00 0.00 1.82
518 528 0.891904 ACAACCGCGCACCCTAAATT 60.892 50.000 8.75 0.00 0.00 1.82
519 529 0.891904 AACAACCGCGCACCCTAAAT 60.892 50.000 8.75 0.00 0.00 1.40
520 530 1.526455 AACAACCGCGCACCCTAAA 60.526 52.632 8.75 0.00 0.00 1.85
521 531 2.111460 AACAACCGCGCACCCTAA 59.889 55.556 8.75 0.00 0.00 2.69
522 532 2.661840 TTCAACAACCGCGCACCCTA 62.662 55.000 8.75 0.00 0.00 3.53
523 533 4.555709 TCAACAACCGCGCACCCT 62.556 61.111 8.75 0.00 0.00 4.34
524 534 2.914908 ATTCAACAACCGCGCACCC 61.915 57.895 8.75 0.00 0.00 4.61
525 535 1.729131 CATTCAACAACCGCGCACC 60.729 57.895 8.75 0.00 0.00 5.01
526 536 0.996727 GACATTCAACAACCGCGCAC 60.997 55.000 8.75 0.00 0.00 5.34
527 537 1.281353 GACATTCAACAACCGCGCA 59.719 52.632 8.75 0.00 0.00 6.09
528 538 0.317436 TTGACATTCAACAACCGCGC 60.317 50.000 0.00 0.00 30.26 6.86
529 539 3.835686 TTGACATTCAACAACCGCG 57.164 47.368 0.00 0.00 30.26 6.46
537 547 5.461737 GCTTCATTTTTCCGTTGACATTCAA 59.538 36.000 0.00 0.00 33.32 2.69
538 548 4.981674 GCTTCATTTTTCCGTTGACATTCA 59.018 37.500 0.00 0.00 0.00 2.57
539 549 4.981674 TGCTTCATTTTTCCGTTGACATTC 59.018 37.500 0.00 0.00 0.00 2.67
540 550 4.942852 TGCTTCATTTTTCCGTTGACATT 58.057 34.783 0.00 0.00 0.00 2.71
541 551 4.582701 TGCTTCATTTTTCCGTTGACAT 57.417 36.364 0.00 0.00 0.00 3.06
542 552 4.377839 TTGCTTCATTTTTCCGTTGACA 57.622 36.364 0.00 0.00 0.00 3.58
543 553 5.905480 AATTGCTTCATTTTTCCGTTGAC 57.095 34.783 0.00 0.00 0.00 3.18
544 554 6.200665 CAGAAATTGCTTCATTTTTCCGTTGA 59.799 34.615 0.00 0.00 36.40 3.18
545 555 6.018832 ACAGAAATTGCTTCATTTTTCCGTTG 60.019 34.615 0.00 0.00 36.40 4.10
546 556 6.018832 CACAGAAATTGCTTCATTTTTCCGTT 60.019 34.615 0.00 0.00 36.40 4.44
547 557 5.463061 CACAGAAATTGCTTCATTTTTCCGT 59.537 36.000 0.00 0.00 36.40 4.69
548 558 5.463061 ACACAGAAATTGCTTCATTTTTCCG 59.537 36.000 0.00 0.00 36.40 4.30
549 559 6.479660 TGACACAGAAATTGCTTCATTTTTCC 59.520 34.615 0.00 0.00 36.40 3.13
550 560 7.467557 TGACACAGAAATTGCTTCATTTTTC 57.532 32.000 0.00 0.00 36.40 2.29
551 561 6.018507 GCTGACACAGAAATTGCTTCATTTTT 60.019 34.615 2.81 0.00 36.40 1.94
552 562 5.464389 GCTGACACAGAAATTGCTTCATTTT 59.536 36.000 2.81 0.00 36.40 1.82
553 563 4.986659 GCTGACACAGAAATTGCTTCATTT 59.013 37.500 2.81 0.00 36.40 2.32
554 564 4.553323 GCTGACACAGAAATTGCTTCATT 58.447 39.130 2.81 0.00 36.40 2.57
555 565 3.365666 CGCTGACACAGAAATTGCTTCAT 60.366 43.478 2.81 0.00 36.40 2.57
556 566 2.031769 CGCTGACACAGAAATTGCTTCA 60.032 45.455 2.81 0.00 36.40 3.02
557 567 2.224079 TCGCTGACACAGAAATTGCTTC 59.776 45.455 2.81 0.00 32.44 3.86
558 568 2.221169 TCGCTGACACAGAAATTGCTT 58.779 42.857 2.81 0.00 32.44 3.91
559 569 1.802960 CTCGCTGACACAGAAATTGCT 59.197 47.619 2.81 0.00 32.44 3.91
560 570 1.135859 CCTCGCTGACACAGAAATTGC 60.136 52.381 2.81 0.00 32.44 3.56
561 571 2.096069 CACCTCGCTGACACAGAAATTG 60.096 50.000 2.81 0.00 32.44 2.32
562 572 2.146342 CACCTCGCTGACACAGAAATT 58.854 47.619 2.81 0.00 32.44 1.82
563 573 1.344438 TCACCTCGCTGACACAGAAAT 59.656 47.619 2.81 0.00 32.44 2.17
564 574 0.750249 TCACCTCGCTGACACAGAAA 59.250 50.000 2.81 0.00 32.44 2.52
565 575 0.969149 ATCACCTCGCTGACACAGAA 59.031 50.000 2.81 0.00 32.44 3.02
566 576 0.969149 AATCACCTCGCTGACACAGA 59.031 50.000 2.81 0.00 32.44 3.41
567 577 1.462283 CAAATCACCTCGCTGACACAG 59.538 52.381 0.00 0.00 34.12 3.66
568 578 1.511850 CAAATCACCTCGCTGACACA 58.488 50.000 0.00 0.00 0.00 3.72
569 579 0.166814 GCAAATCACCTCGCTGACAC 59.833 55.000 0.00 0.00 0.00 3.67
570 580 0.035317 AGCAAATCACCTCGCTGACA 59.965 50.000 0.00 0.00 32.33 3.58
571 581 2.846371 AGCAAATCACCTCGCTGAC 58.154 52.632 0.00 0.00 32.33 3.51
574 584 0.254178 ATCCAGCAAATCACCTCGCT 59.746 50.000 0.00 0.00 34.29 4.93
575 585 0.659957 GATCCAGCAAATCACCTCGC 59.340 55.000 0.00 0.00 0.00 5.03
576 586 1.667724 GTGATCCAGCAAATCACCTCG 59.332 52.381 12.57 0.00 44.68 4.63
581 591 1.355381 ACCAGGTGATCCAGCAAATCA 59.645 47.619 0.00 0.00 33.95 2.57
582 592 1.747355 CACCAGGTGATCCAGCAAATC 59.253 52.381 15.35 0.00 35.23 2.17
583 593 1.843368 CACCAGGTGATCCAGCAAAT 58.157 50.000 15.35 0.00 35.23 2.32
584 594 0.895100 GCACCAGGTGATCCAGCAAA 60.895 55.000 24.96 0.00 35.23 3.68
585 595 1.303561 GCACCAGGTGATCCAGCAA 60.304 57.895 24.96 0.00 35.23 3.91
586 596 2.352422 GCACCAGGTGATCCAGCA 59.648 61.111 24.96 0.00 35.23 4.41
587 597 1.748122 CTGCACCAGGTGATCCAGC 60.748 63.158 24.96 7.11 35.23 4.85
588 598 0.037303 AACTGCACCAGGTGATCCAG 59.963 55.000 24.96 21.47 35.23 3.86
589 599 0.478072 AAACTGCACCAGGTGATCCA 59.522 50.000 24.96 10.87 35.23 3.41
590 600 2.027192 TCTAAACTGCACCAGGTGATCC 60.027 50.000 24.96 6.24 35.23 3.36
591 601 3.334583 TCTAAACTGCACCAGGTGATC 57.665 47.619 24.96 7.03 35.23 2.92
592 602 3.788227 TTCTAAACTGCACCAGGTGAT 57.212 42.857 24.96 4.60 35.23 3.06
593 603 3.674997 GATTCTAAACTGCACCAGGTGA 58.325 45.455 24.96 7.63 35.23 4.02
594 604 2.416547 CGATTCTAAACTGCACCAGGTG 59.583 50.000 16.16 16.16 35.51 4.00
595 605 2.301870 TCGATTCTAAACTGCACCAGGT 59.698 45.455 0.00 0.00 35.51 4.00
596 606 2.972625 TCGATTCTAAACTGCACCAGG 58.027 47.619 0.00 0.00 35.51 4.45
597 607 3.310774 CCATCGATTCTAAACTGCACCAG 59.689 47.826 0.00 0.00 37.52 4.00
598 608 3.270027 CCATCGATTCTAAACTGCACCA 58.730 45.455 0.00 0.00 0.00 4.17
599 609 2.614057 CCCATCGATTCTAAACTGCACC 59.386 50.000 0.00 0.00 0.00 5.01
600 610 3.309954 GTCCCATCGATTCTAAACTGCAC 59.690 47.826 0.00 0.00 0.00 4.57
601 611 3.197766 AGTCCCATCGATTCTAAACTGCA 59.802 43.478 0.00 0.00 0.00 4.41
602 612 3.557595 CAGTCCCATCGATTCTAAACTGC 59.442 47.826 0.00 0.00 0.00 4.40
603 613 4.122776 CCAGTCCCATCGATTCTAAACTG 58.877 47.826 0.00 5.77 34.18 3.16
604 614 3.775316 ACCAGTCCCATCGATTCTAAACT 59.225 43.478 0.00 0.00 0.00 2.66
605 615 4.138487 ACCAGTCCCATCGATTCTAAAC 57.862 45.455 0.00 0.00 0.00 2.01
606 616 6.494666 AATACCAGTCCCATCGATTCTAAA 57.505 37.500 0.00 0.00 0.00 1.85
607 617 6.494666 AAATACCAGTCCCATCGATTCTAA 57.505 37.500 0.00 0.00 0.00 2.10
608 618 6.494666 AAAATACCAGTCCCATCGATTCTA 57.505 37.500 0.00 0.00 0.00 2.10
609 619 5.373812 AAAATACCAGTCCCATCGATTCT 57.626 39.130 0.00 0.00 0.00 2.40
629 639 9.757227 CATACTTTCCCACAAATTCTACAAAAA 57.243 29.630 0.00 0.00 0.00 1.94
630 640 8.919145 ACATACTTTCCCACAAATTCTACAAAA 58.081 29.630 0.00 0.00 0.00 2.44
631 641 8.472007 ACATACTTTCCCACAAATTCTACAAA 57.528 30.769 0.00 0.00 0.00 2.83
632 642 8.472007 AACATACTTTCCCACAAATTCTACAA 57.528 30.769 0.00 0.00 0.00 2.41
633 643 8.472007 AAACATACTTTCCCACAAATTCTACA 57.528 30.769 0.00 0.00 0.00 2.74
636 646 9.308000 TCATAAACATACTTTCCCACAAATTCT 57.692 29.630 0.00 0.00 0.00 2.40
657 667 9.496873 CACCGTACCAATCCTATAAAATCATAA 57.503 33.333 0.00 0.00 0.00 1.90
658 668 8.872134 TCACCGTACCAATCCTATAAAATCATA 58.128 33.333 0.00 0.00 0.00 2.15
659 669 7.741785 TCACCGTACCAATCCTATAAAATCAT 58.258 34.615 0.00 0.00 0.00 2.45
660 670 7.127012 TCACCGTACCAATCCTATAAAATCA 57.873 36.000 0.00 0.00 0.00 2.57
661 671 7.660208 ACATCACCGTACCAATCCTATAAAATC 59.340 37.037 0.00 0.00 0.00 2.17
662 672 7.514721 ACATCACCGTACCAATCCTATAAAAT 58.485 34.615 0.00 0.00 0.00 1.82
663 673 6.891388 ACATCACCGTACCAATCCTATAAAA 58.109 36.000 0.00 0.00 0.00 1.52
664 674 6.488769 ACATCACCGTACCAATCCTATAAA 57.511 37.500 0.00 0.00 0.00 1.40
665 675 6.488769 AACATCACCGTACCAATCCTATAA 57.511 37.500 0.00 0.00 0.00 0.98
666 676 6.488769 AAACATCACCGTACCAATCCTATA 57.511 37.500 0.00 0.00 0.00 1.31
667 677 5.367945 AAACATCACCGTACCAATCCTAT 57.632 39.130 0.00 0.00 0.00 2.57
668 678 4.829872 AAACATCACCGTACCAATCCTA 57.170 40.909 0.00 0.00 0.00 2.94
669 679 3.713826 AAACATCACCGTACCAATCCT 57.286 42.857 0.00 0.00 0.00 3.24
670 680 6.348213 GCATATAAACATCACCGTACCAATCC 60.348 42.308 0.00 0.00 0.00 3.01
671 681 6.426937 AGCATATAAACATCACCGTACCAATC 59.573 38.462 0.00 0.00 0.00 2.67
672 682 6.204688 CAGCATATAAACATCACCGTACCAAT 59.795 38.462 0.00 0.00 0.00 3.16
673 683 5.525745 CAGCATATAAACATCACCGTACCAA 59.474 40.000 0.00 0.00 0.00 3.67
674 684 5.053811 CAGCATATAAACATCACCGTACCA 58.946 41.667 0.00 0.00 0.00 3.25
675 685 5.294356 TCAGCATATAAACATCACCGTACC 58.706 41.667 0.00 0.00 0.00 3.34
676 686 7.421530 AATCAGCATATAAACATCACCGTAC 57.578 36.000 0.00 0.00 0.00 3.67
678 688 9.890629 ATATAATCAGCATATAAACATCACCGT 57.109 29.630 0.00 0.00 0.00 4.83
703 713 9.458727 CCAACATATGCTTAGAATTCCATCTAT 57.541 33.333 1.58 0.00 32.20 1.98
704 714 8.659527 TCCAACATATGCTTAGAATTCCATCTA 58.340 33.333 1.58 0.00 0.00 1.98
705 715 7.520798 TCCAACATATGCTTAGAATTCCATCT 58.479 34.615 1.58 0.00 0.00 2.90
706 716 7.663081 TCTCCAACATATGCTTAGAATTCCATC 59.337 37.037 1.58 0.00 0.00 3.51
707 717 7.520798 TCTCCAACATATGCTTAGAATTCCAT 58.479 34.615 1.58 1.09 0.00 3.41
708 718 6.899089 TCTCCAACATATGCTTAGAATTCCA 58.101 36.000 1.58 0.00 0.00 3.53
709 719 7.807977 TTCTCCAACATATGCTTAGAATTCC 57.192 36.000 1.58 0.00 0.00 3.01
712 722 9.412460 TCAATTTCTCCAACATATGCTTAGAAT 57.588 29.630 1.58 0.00 0.00 2.40
713 723 8.806429 TCAATTTCTCCAACATATGCTTAGAA 57.194 30.769 1.58 4.66 0.00 2.10
714 724 8.806429 TTCAATTTCTCCAACATATGCTTAGA 57.194 30.769 1.58 0.00 0.00 2.10
715 725 8.133627 CCTTCAATTTCTCCAACATATGCTTAG 58.866 37.037 1.58 0.00 0.00 2.18
716 726 7.615365 ACCTTCAATTTCTCCAACATATGCTTA 59.385 33.333 1.58 0.00 0.00 3.09
717 727 6.438425 ACCTTCAATTTCTCCAACATATGCTT 59.562 34.615 1.58 0.00 0.00 3.91
718 728 5.954150 ACCTTCAATTTCTCCAACATATGCT 59.046 36.000 1.58 0.00 0.00 3.79
719 729 6.096001 AGACCTTCAATTTCTCCAACATATGC 59.904 38.462 1.58 0.00 0.00 3.14
720 730 7.636150 AGACCTTCAATTTCTCCAACATATG 57.364 36.000 0.00 0.00 0.00 1.78
721 731 7.671398 ACAAGACCTTCAATTTCTCCAACATAT 59.329 33.333 0.00 0.00 0.00 1.78
722 732 7.004086 ACAAGACCTTCAATTTCTCCAACATA 58.996 34.615 0.00 0.00 0.00 2.29
723 733 5.835280 ACAAGACCTTCAATTTCTCCAACAT 59.165 36.000 0.00 0.00 0.00 2.71
724 734 5.200483 ACAAGACCTTCAATTTCTCCAACA 58.800 37.500 0.00 0.00 0.00 3.33
725 735 5.774498 ACAAGACCTTCAATTTCTCCAAC 57.226 39.130 0.00 0.00 0.00 3.77
726 736 7.004086 ACATACAAGACCTTCAATTTCTCCAA 58.996 34.615 0.00 0.00 0.00 3.53
727 737 6.542821 ACATACAAGACCTTCAATTTCTCCA 58.457 36.000 0.00 0.00 0.00 3.86
728 738 7.308435 CAACATACAAGACCTTCAATTTCTCC 58.692 38.462 0.00 0.00 0.00 3.71
729 739 6.803807 GCAACATACAAGACCTTCAATTTCTC 59.196 38.462 0.00 0.00 0.00 2.87
730 740 6.265196 TGCAACATACAAGACCTTCAATTTCT 59.735 34.615 0.00 0.00 0.00 2.52
731 741 6.446318 TGCAACATACAAGACCTTCAATTTC 58.554 36.000 0.00 0.00 0.00 2.17
732 742 6.403866 TGCAACATACAAGACCTTCAATTT 57.596 33.333 0.00 0.00 0.00 1.82
733 743 6.403866 TTGCAACATACAAGACCTTCAATT 57.596 33.333 0.00 0.00 0.00 2.32
734 744 6.015180 ACATTGCAACATACAAGACCTTCAAT 60.015 34.615 0.00 0.00 0.00 2.57
735 745 5.301551 ACATTGCAACATACAAGACCTTCAA 59.698 36.000 0.00 0.00 0.00 2.69
736 746 4.826733 ACATTGCAACATACAAGACCTTCA 59.173 37.500 0.00 0.00 0.00 3.02
737 747 5.376854 ACATTGCAACATACAAGACCTTC 57.623 39.130 0.00 0.00 0.00 3.46
738 748 6.003950 AGTACATTGCAACATACAAGACCTT 58.996 36.000 19.09 0.33 0.00 3.50
739 749 5.560724 AGTACATTGCAACATACAAGACCT 58.439 37.500 19.09 0.88 0.00 3.85
740 750 5.880054 AGTACATTGCAACATACAAGACC 57.120 39.130 19.09 0.00 0.00 3.85
741 751 6.072728 TGGAAGTACATTGCAACATACAAGAC 60.073 38.462 19.09 9.97 36.14 3.01
742 752 6.000840 TGGAAGTACATTGCAACATACAAGA 58.999 36.000 19.09 3.24 36.14 3.02
743 753 6.252967 TGGAAGTACATTGCAACATACAAG 57.747 37.500 19.09 1.55 36.14 3.16
744 754 6.832520 ATGGAAGTACATTGCAACATACAA 57.167 33.333 19.09 6.80 43.04 2.41
745 755 6.832520 AATGGAAGTACATTGCAACATACA 57.167 33.333 19.09 2.42 43.04 2.29
746 756 8.458843 ACTAAATGGAAGTACATTGCAACATAC 58.541 33.333 0.00 7.57 43.04 2.39
747 757 8.574251 ACTAAATGGAAGTACATTGCAACATA 57.426 30.769 0.00 0.00 43.04 2.29
748 758 7.466746 ACTAAATGGAAGTACATTGCAACAT 57.533 32.000 0.00 0.00 43.04 2.71
749 759 6.892658 ACTAAATGGAAGTACATTGCAACA 57.107 33.333 0.00 0.00 43.04 3.33
750 760 7.145323 ACAACTAAATGGAAGTACATTGCAAC 58.855 34.615 0.00 0.00 43.04 4.17
751 761 7.283625 ACAACTAAATGGAAGTACATTGCAA 57.716 32.000 0.00 0.00 43.04 4.08
752 762 6.892658 ACAACTAAATGGAAGTACATTGCA 57.107 33.333 0.00 0.00 44.01 4.08
753 763 8.512138 ACTAACAACTAAATGGAAGTACATTGC 58.488 33.333 0.00 0.00 40.71 3.56
770 780 8.798402 GTCTAGGCATCATCTATACTAACAACT 58.202 37.037 0.00 0.00 0.00 3.16
771 781 8.798402 AGTCTAGGCATCATCTATACTAACAAC 58.202 37.037 0.00 0.00 0.00 3.32
772 782 8.941995 AGTCTAGGCATCATCTATACTAACAA 57.058 34.615 0.00 0.00 0.00 2.83
773 783 8.941995 AAGTCTAGGCATCATCTATACTAACA 57.058 34.615 0.00 0.00 0.00 2.41
782 792 8.874156 TGATGTAAATAAGTCTAGGCATCATCT 58.126 33.333 0.00 0.00 37.25 2.90
783 793 9.494271 TTGATGTAAATAAGTCTAGGCATCATC 57.506 33.333 0.00 0.00 40.36 2.92
785 795 9.276590 CATTGATGTAAATAAGTCTAGGCATCA 57.723 33.333 0.00 0.00 39.41 3.07
786 796 8.233190 GCATTGATGTAAATAAGTCTAGGCATC 58.767 37.037 0.00 0.00 34.01 3.91
787 797 7.175641 GGCATTGATGTAAATAAGTCTAGGCAT 59.824 37.037 0.00 0.00 0.00 4.40
788 798 6.486657 GGCATTGATGTAAATAAGTCTAGGCA 59.513 38.462 0.00 0.00 0.00 4.75
789 799 6.712547 AGGCATTGATGTAAATAAGTCTAGGC 59.287 38.462 0.00 0.00 0.00 3.93
790 800 9.429359 CTAGGCATTGATGTAAATAAGTCTAGG 57.571 37.037 0.00 0.00 0.00 3.02
791 801 9.988815 ACTAGGCATTGATGTAAATAAGTCTAG 57.011 33.333 0.00 0.00 0.00 2.43
793 803 9.331282 GAACTAGGCATTGATGTAAATAAGTCT 57.669 33.333 0.00 0.00 0.00 3.24
794 804 9.331282 AGAACTAGGCATTGATGTAAATAAGTC 57.669 33.333 0.00 0.00 0.00 3.01
795 805 9.686683 AAGAACTAGGCATTGATGTAAATAAGT 57.313 29.630 0.00 0.00 0.00 2.24
799 809 7.761249 GCAAAAGAACTAGGCATTGATGTAAAT 59.239 33.333 0.00 0.00 0.00 1.40
800 810 7.090173 GCAAAAGAACTAGGCATTGATGTAAA 58.910 34.615 0.00 0.00 0.00 2.01
801 811 6.208402 TGCAAAAGAACTAGGCATTGATGTAA 59.792 34.615 0.00 0.00 0.00 2.41
802 812 5.709631 TGCAAAAGAACTAGGCATTGATGTA 59.290 36.000 0.00 0.00 0.00 2.29
803 813 4.523943 TGCAAAAGAACTAGGCATTGATGT 59.476 37.500 0.00 0.00 0.00 3.06
804 814 5.063180 TGCAAAAGAACTAGGCATTGATG 57.937 39.130 0.00 0.00 0.00 3.07
805 815 5.927281 ATGCAAAAGAACTAGGCATTGAT 57.073 34.783 0.00 0.00 42.08 2.57
806 816 6.602803 TCATATGCAAAAGAACTAGGCATTGA 59.397 34.615 2.56 4.71 42.08 2.57
807 817 6.694411 GTCATATGCAAAAGAACTAGGCATTG 59.306 38.462 2.56 2.69 42.08 2.82
808 818 6.183360 GGTCATATGCAAAAGAACTAGGCATT 60.183 38.462 2.56 0.00 42.08 3.56
809 819 5.300286 GGTCATATGCAAAAGAACTAGGCAT 59.700 40.000 0.00 0.00 46.07 4.40
810 820 4.640201 GGTCATATGCAAAAGAACTAGGCA 59.360 41.667 0.00 0.00 39.03 4.75
811 821 4.640201 TGGTCATATGCAAAAGAACTAGGC 59.360 41.667 0.00 0.00 0.00 3.93
812 822 5.882557 ACTGGTCATATGCAAAAGAACTAGG 59.117 40.000 0.00 0.00 0.00 3.02
813 823 6.992063 ACTGGTCATATGCAAAAGAACTAG 57.008 37.500 0.00 0.00 0.00 2.57
815 825 9.461312 TTTATACTGGTCATATGCAAAAGAACT 57.539 29.630 0.00 0.00 0.00 3.01
816 826 9.503427 GTTTATACTGGTCATATGCAAAAGAAC 57.497 33.333 0.00 0.00 0.00 3.01
817 827 9.237187 TGTTTATACTGGTCATATGCAAAAGAA 57.763 29.630 0.00 0.00 0.00 2.52
818 828 8.800370 TGTTTATACTGGTCATATGCAAAAGA 57.200 30.769 0.00 0.00 0.00 2.52
819 829 9.289303 GTTGTTTATACTGGTCATATGCAAAAG 57.711 33.333 0.00 0.00 0.00 2.27
820 830 8.247562 GGTTGTTTATACTGGTCATATGCAAAA 58.752 33.333 0.00 0.00 0.00 2.44
821 831 7.394641 TGGTTGTTTATACTGGTCATATGCAAA 59.605 33.333 0.00 0.00 0.00 3.68
822 832 6.887002 TGGTTGTTTATACTGGTCATATGCAA 59.113 34.615 0.00 0.00 0.00 4.08
823 833 6.418946 TGGTTGTTTATACTGGTCATATGCA 58.581 36.000 0.00 0.00 0.00 3.96
824 834 6.935741 TGGTTGTTTATACTGGTCATATGC 57.064 37.500 0.00 0.00 0.00 3.14
825 835 8.352201 CCAATGGTTGTTTATACTGGTCATATG 58.648 37.037 0.00 0.00 0.00 1.78
826 836 8.058847 ACCAATGGTTGTTTATACTGGTCATAT 58.941 33.333 0.00 0.00 30.03 1.78
827 837 7.338196 CACCAATGGTTGTTTATACTGGTCATA 59.662 37.037 0.16 0.00 33.70 2.15
828 838 6.152661 CACCAATGGTTGTTTATACTGGTCAT 59.847 38.462 0.16 0.00 33.70 3.06
829 839 5.475220 CACCAATGGTTGTTTATACTGGTCA 59.525 40.000 0.16 0.00 33.70 4.02
830 840 5.621329 GCACCAATGGTTGTTTATACTGGTC 60.621 44.000 0.16 0.00 33.70 4.02
831 841 4.219725 GCACCAATGGTTGTTTATACTGGT 59.780 41.667 0.16 0.00 36.37 4.00
832 842 4.674101 CGCACCAATGGTTGTTTATACTGG 60.674 45.833 0.16 0.00 31.02 4.00
833 843 4.083003 ACGCACCAATGGTTGTTTATACTG 60.083 41.667 0.16 0.00 31.02 2.74
834 844 4.076394 ACGCACCAATGGTTGTTTATACT 58.924 39.130 0.16 0.00 31.02 2.12
835 845 4.408694 GACGCACCAATGGTTGTTTATAC 58.591 43.478 0.16 0.00 31.02 1.47
836 846 3.440872 GGACGCACCAATGGTTGTTTATA 59.559 43.478 0.16 0.00 38.79 0.98
837 847 2.230266 GGACGCACCAATGGTTGTTTAT 59.770 45.455 0.16 0.00 38.79 1.40
838 848 1.609555 GGACGCACCAATGGTTGTTTA 59.390 47.619 0.16 0.00 38.79 2.01
839 849 0.387565 GGACGCACCAATGGTTGTTT 59.612 50.000 0.16 0.00 38.79 2.83
840 850 0.753479 TGGACGCACCAATGGTTGTT 60.753 50.000 0.16 0.00 46.75 2.83
841 851 1.152860 TGGACGCACCAATGGTTGT 60.153 52.632 0.16 4.19 46.75 3.32
842 852 3.756802 TGGACGCACCAATGGTTG 58.243 55.556 0.16 0.24 46.75 3.77
861 871 3.995506 GATGGGAAGGTGGGCGGTG 62.996 68.421 0.00 0.00 0.00 4.94
862 872 3.728373 GATGGGAAGGTGGGCGGT 61.728 66.667 0.00 0.00 0.00 5.68
863 873 4.506255 GGATGGGAAGGTGGGCGG 62.506 72.222 0.00 0.00 0.00 6.13
864 874 3.704231 CTGGATGGGAAGGTGGGCG 62.704 68.421 0.00 0.00 0.00 6.13
865 875 2.276740 CTGGATGGGAAGGTGGGC 59.723 66.667 0.00 0.00 0.00 5.36
866 876 2.276740 GCTGGATGGGAAGGTGGG 59.723 66.667 0.00 0.00 0.00 4.61
867 877 1.379044 GTGCTGGATGGGAAGGTGG 60.379 63.158 0.00 0.00 0.00 4.61
868 878 1.379044 GGTGCTGGATGGGAAGGTG 60.379 63.158 0.00 0.00 0.00 4.00
869 879 2.971598 CGGTGCTGGATGGGAAGGT 61.972 63.158 0.00 0.00 0.00 3.50
870 880 2.124570 CGGTGCTGGATGGGAAGG 60.125 66.667 0.00 0.00 0.00 3.46
871 881 2.825836 GCGGTGCTGGATGGGAAG 60.826 66.667 0.00 0.00 0.00 3.46
872 882 4.424711 GGCGGTGCTGGATGGGAA 62.425 66.667 0.00 0.00 0.00 3.97
905 915 6.897413 TGCACTAATCCTAGGCATCATCTATA 59.103 38.462 2.96 0.00 30.81 1.31
907 917 5.086621 TGCACTAATCCTAGGCATCATCTA 58.913 41.667 2.96 0.00 30.81 1.98
908 918 3.906218 TGCACTAATCCTAGGCATCATCT 59.094 43.478 2.96 0.00 30.81 2.90
909 919 4.277515 TGCACTAATCCTAGGCATCATC 57.722 45.455 2.96 0.00 30.81 2.92
910 920 4.324099 GGATGCACTAATCCTAGGCATCAT 60.324 45.833 21.80 11.10 46.92 2.45
911 921 3.008375 GGATGCACTAATCCTAGGCATCA 59.992 47.826 21.80 7.73 46.92 3.07
912 922 3.604582 GGATGCACTAATCCTAGGCATC 58.395 50.000 14.62 14.62 45.88 3.91
913 923 3.710209 GGATGCACTAATCCTAGGCAT 57.290 47.619 2.96 1.61 42.57 4.40
1077 3947 0.182537 ACTGCACCTTGGTGTTGCTA 59.817 50.000 19.47 3.11 0.00 3.49
1097 3967 1.228367 CTGTTGGGCTCCTTGCTGT 60.228 57.895 0.00 0.00 42.39 4.40
1115 3985 4.705507 TGTAGGAGTGGACATTGTAGAGAC 59.294 45.833 0.00 0.00 0.00 3.36
1116 3986 4.930696 TGTAGGAGTGGACATTGTAGAGA 58.069 43.478 0.00 0.00 0.00 3.10
1236 4108 0.386838 GTCTTGCTGTTTGCCAAGCT 59.613 50.000 0.00 0.00 42.00 3.74
1244 4116 2.542907 CGCCACGGTCTTGCTGTTT 61.543 57.895 0.00 0.00 33.66 2.83
1288 4160 0.462937 CGTGGACAGGACAACAACCA 60.463 55.000 0.00 0.00 0.00 3.67
1363 4253 1.611673 CCATCTTGCGGAACTCCTTGT 60.612 52.381 0.00 0.00 0.00 3.16
1415 4305 4.023193 AGGGCAATTCAAGTACAAAACTCG 60.023 41.667 0.00 0.00 37.50 4.18
1593 4484 0.179097 GCGGAGTAGAAAGCAGGAGG 60.179 60.000 0.00 0.00 0.00 4.30
1603 4494 3.449227 CGGTGGCAGCGGAGTAGA 61.449 66.667 29.73 0.00 35.16 2.59
1617 4508 0.584876 GTAGCAAAACAACGAGCGGT 59.415 50.000 0.00 0.00 0.00 5.68
1664 4555 3.636679 TCTATGAGCAGTGCTTAGGAGT 58.363 45.455 20.80 2.28 39.88 3.85
1686 4577 0.035458 AACAGCGGCAAGTAGAAGCT 59.965 50.000 1.45 0.00 38.90 3.74
1690 4581 2.346803 GAATCAACAGCGGCAAGTAGA 58.653 47.619 1.45 0.00 0.00 2.59
1863 6291 5.153950 AGTCAGAAAATGTAGGAGTGTCC 57.846 43.478 0.00 0.00 36.58 4.02
1930 6409 5.689383 TGCAGTACCAAATTCAAAGACTC 57.311 39.130 0.00 0.00 0.00 3.36
1932 6412 6.012658 TCATGCAGTACCAAATTCAAAGAC 57.987 37.500 0.00 0.00 0.00 3.01
1962 6443 7.625553 CAAATACTCTCTGTGTAAGCAATAGC 58.374 38.462 0.00 0.00 42.56 2.97
2026 6514 9.023962 TGAAATATTACAAAGAAGGCACTCATT 57.976 29.630 0.00 0.00 38.49 2.57
2035 6523 7.601856 TGCCAAGGTGAAATATTACAAAGAAG 58.398 34.615 0.00 0.00 0.00 2.85
2279 6773 3.144506 GAGGTCGATTATCTCCGTGGTA 58.855 50.000 0.00 0.00 27.87 3.25
2348 6842 7.928307 ACAGAAGCATACTAACATCACAAAT 57.072 32.000 0.00 0.00 0.00 2.32
2372 6866 7.686438 ATTGTAAGTCACATTGCATAGTCAA 57.314 32.000 0.00 0.00 36.90 3.18
2525 7023 2.800544 GGTATTCGCGTACAGATTGCAT 59.199 45.455 5.77 0.00 0.00 3.96
2527 7025 2.198406 TGGTATTCGCGTACAGATTGC 58.802 47.619 5.77 0.00 0.00 3.56
2649 7154 3.051032 TCCTATTGTCCTCCTCCTCCAAT 60.051 47.826 0.00 0.00 0.00 3.16
2653 7158 3.648739 AGTTCCTATTGTCCTCCTCCTC 58.351 50.000 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.