Multiple sequence alignment - TraesCS1A01G214500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G214500 chr1A 100.000 3735 0 0 1 3735 377452399 377448665 0.000000e+00 6898.0
1 TraesCS1A01G214500 chr1D 88.841 1613 76 35 348 1901 302880332 302878765 0.000000e+00 1886.0
2 TraesCS1A01G214500 chr1D 90.601 1149 44 23 1919 3022 302878778 302877649 0.000000e+00 1465.0
3 TraesCS1A01G214500 chr1D 93.291 313 8 4 3430 3735 302877539 302877233 2.050000e-122 449.0
4 TraesCS1A01G214500 chr1D 92.908 282 14 3 3133 3410 64213824 64214103 4.490000e-109 405.0
5 TraesCS1A01G214500 chr1D 94.186 86 4 1 3054 3138 302877645 302877560 3.030000e-26 130.0
6 TraesCS1A01G214500 chr1B 90.747 1232 52 21 1919 3138 409672593 409671412 0.000000e+00 1587.0
7 TraesCS1A01G214500 chr1B 87.447 1402 62 30 529 1901 409673896 409672580 0.000000e+00 1509.0
8 TraesCS1A01G214500 chr1B 92.780 277 14 3 3136 3408 53418335 53418609 2.700000e-106 396.0
9 TraesCS1A01G214500 chr1B 91.135 282 10 7 3459 3735 409671391 409671120 5.890000e-98 368.0
10 TraesCS1A01G214500 chr1B 92.701 137 5 3 405 536 409674138 409674002 3.810000e-45 193.0
11 TraesCS1A01G214500 chr7B 93.863 277 11 3 3136 3408 71396553 71396279 2.680000e-111 412.0
12 TraesCS1A01G214500 chr7B 92.780 277 14 2 3136 3408 474898094 474897820 2.700000e-106 396.0
13 TraesCS1A01G214500 chr7A 93.091 275 13 3 3136 3406 610367667 610367395 7.520000e-107 398.0
14 TraesCS1A01G214500 chr5D 92.780 277 14 3 3136 3408 547927676 547927402 2.700000e-106 396.0
15 TraesCS1A01G214500 chr5D 76.849 311 60 6 16 315 512213599 512213908 8.300000e-37 165.0
16 TraesCS1A01G214500 chr4B 92.780 277 14 2 3136 3408 544212699 544212973 2.700000e-106 396.0
17 TraesCS1A01G214500 chr2B 91.873 283 17 2 3133 3411 540489789 540489509 1.260000e-104 390.0
18 TraesCS1A01G214500 chr2B 83.077 65 9 2 1174 1237 94034205 94034142 1.450000e-04 58.4
19 TraesCS1A01G214500 chr2B 83.077 65 9 2 1174 1237 94224836 94224773 1.450000e-04 58.4
20 TraesCS1A01G214500 chr2B 96.875 32 1 0 1206 1237 93112155 93112186 2.000000e-03 54.7
21 TraesCS1A01G214500 chr5A 90.753 292 20 5 3124 3410 474360087 474360376 2.100000e-102 383.0
22 TraesCS1A01G214500 chr5A 80.180 111 13 8 1427 1533 463765643 463765538 1.440000e-09 75.0
23 TraesCS1A01G214500 chr2A 80.263 304 49 5 16 318 497693543 497693836 6.280000e-53 219.0
24 TraesCS1A01G214500 chr2A 83.077 65 9 2 1174 1237 59723634 59723697 1.450000e-04 58.4
25 TraesCS1A01G214500 chr6A 81.159 276 43 7 44 317 430923403 430923671 2.920000e-51 213.0
26 TraesCS1A01G214500 chr6A 86.131 137 19 0 16 152 335774342 335774206 8.360000e-32 148.0
27 TraesCS1A01G214500 chr6A 82.895 76 13 0 1412 1487 23962754 23962679 6.690000e-08 69.4
28 TraesCS1A01G214500 chr6A 78.431 102 22 0 1424 1525 23951956 23951855 2.410000e-07 67.6
29 TraesCS1A01G214500 chr6D 78.964 309 50 9 21 317 141709118 141709423 2.940000e-46 196.0
30 TraesCS1A01G214500 chr6D 82.895 76 13 0 1412 1487 25879706 25879631 6.690000e-08 69.4
31 TraesCS1A01G214500 chr6D 84.375 64 10 0 1424 1487 25852203 25852140 3.110000e-06 63.9
32 TraesCS1A01G214500 chr6B 79.004 281 53 6 50 327 177277519 177277242 1.770000e-43 187.0
33 TraesCS1A01G214500 chr6B 78.361 305 52 6 25 317 184766557 184766859 6.370000e-43 185.0
34 TraesCS1A01G214500 chr6B 83.951 81 11 2 1411 1490 47989820 47989741 4.000000e-10 76.8
35 TraesCS1A01G214500 chr3D 86.624 157 19 2 1 157 333006781 333006935 4.960000e-39 172.0
36 TraesCS1A01G214500 chr5B 80.090 221 39 4 16 235 463994297 463994081 3.860000e-35 159.0
37 TraesCS1A01G214500 chr5B 79.279 111 14 8 1427 1533 428962910 428962805 6.690000e-08 69.4
38 TraesCS1A01G214500 chr2D 83.077 65 9 2 1174 1237 59727242 59727305 1.450000e-04 58.4
39 TraesCS1A01G214500 chr2D 83.077 65 9 2 1174 1237 60138800 60138737 1.450000e-04 58.4
40 TraesCS1A01G214500 chr2D 84.483 58 6 3 1181 1237 59845709 59845764 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G214500 chr1A 377448665 377452399 3734 True 6898.00 6898 100.00000 1 3735 1 chr1A.!!$R1 3734
1 TraesCS1A01G214500 chr1D 302877233 302880332 3099 True 982.50 1886 91.72975 348 3735 4 chr1D.!!$R1 3387
2 TraesCS1A01G214500 chr1B 409671120 409674138 3018 True 914.25 1587 90.50750 405 3735 4 chr1B.!!$R1 3330

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
119 120 0.039618 GGGTGGAAGAGAATGGCCAA 59.960 55.0 10.96 0.0 31.18 4.52 F
240 241 0.041926 CGGGTGGACGAAAAACGAAC 60.042 55.0 0.00 0.0 45.77 3.95 F
788 915 0.105709 CCCCTTCTCTCCCTCTCTCC 60.106 65.0 0.00 0.0 0.00 3.71 F
1446 1599 0.243907 ACGACATCAAGTCCGACCTG 59.756 55.0 0.00 0.0 44.66 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1934 2114 0.250513 GGACTGCTAGTGGTGAAGGG 59.749 60.000 0.0 0.0 0.00 3.95 R
1935 2115 1.270907 AGGACTGCTAGTGGTGAAGG 58.729 55.000 0.0 0.0 0.00 3.46 R
2620 2851 1.003718 GGGGAAGAAGTCGGTGGTG 60.004 63.158 0.0 0.0 0.00 4.17 R
3137 3371 0.101759 TACTCGCCATTACGACCAGC 59.898 55.000 0.0 0.0 37.09 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.687102 CGTGGGTGTAGGCACGGA 61.687 66.667 0.00 0.00 46.13 4.69
28 29 2.047560 GTGGGTGTAGGCACGGAC 60.048 66.667 0.00 0.00 46.13 4.79
29 30 2.203728 TGGGTGTAGGCACGGACT 60.204 61.111 0.00 0.00 46.13 3.85
30 31 2.264794 GGGTGTAGGCACGGACTG 59.735 66.667 0.00 0.00 46.13 3.51
31 32 2.434359 GGTGTAGGCACGGACTGC 60.434 66.667 0.00 0.00 46.13 4.40
32 33 2.657237 GTGTAGGCACGGACTGCT 59.343 61.111 0.00 0.00 46.25 4.24
33 34 1.738099 GTGTAGGCACGGACTGCTG 60.738 63.158 0.00 0.00 46.25 4.41
34 35 2.125512 GTAGGCACGGACTGCTGG 60.126 66.667 0.00 0.00 46.25 4.85
35 36 4.082523 TAGGCACGGACTGCTGGC 62.083 66.667 0.00 0.00 46.25 4.85
47 48 4.329545 GCTGGCAGGGACACGGAA 62.330 66.667 17.64 0.00 0.00 4.30
48 49 2.429930 CTGGCAGGGACACGGAAA 59.570 61.111 6.61 0.00 0.00 3.13
49 50 1.966451 CTGGCAGGGACACGGAAAC 60.966 63.158 6.61 0.00 0.00 2.78
50 51 2.397413 CTGGCAGGGACACGGAAACT 62.397 60.000 6.61 0.00 0.00 2.66
51 52 1.966451 GGCAGGGACACGGAAACTG 60.966 63.158 0.00 0.00 0.00 3.16
52 53 1.966451 GCAGGGACACGGAAACTGG 60.966 63.158 0.00 0.00 0.00 4.00
53 54 1.302511 CAGGGACACGGAAACTGGG 60.303 63.158 0.00 0.00 0.00 4.45
54 55 1.768888 AGGGACACGGAAACTGGGT 60.769 57.895 0.00 0.00 0.00 4.51
55 56 1.599797 GGGACACGGAAACTGGGTG 60.600 63.158 0.00 0.00 37.67 4.61
56 57 1.599797 GGACACGGAAACTGGGTGG 60.600 63.158 0.00 0.00 36.02 4.61
57 58 2.203294 ACACGGAAACTGGGTGGC 60.203 61.111 0.00 0.00 36.02 5.01
58 59 3.353836 CACGGAAACTGGGTGGCG 61.354 66.667 0.00 0.00 0.00 5.69
59 60 4.636435 ACGGAAACTGGGTGGCGG 62.636 66.667 0.00 0.00 0.00 6.13
96 97 4.742201 GCGAGGGCTTGCTGTCGA 62.742 66.667 16.79 0.00 37.03 4.20
97 98 2.185350 CGAGGGCTTGCTGTCGAT 59.815 61.111 10.15 0.00 34.28 3.59
98 99 1.437573 CGAGGGCTTGCTGTCGATA 59.562 57.895 10.15 0.00 34.28 2.92
99 100 0.596083 CGAGGGCTTGCTGTCGATAG 60.596 60.000 4.57 4.57 34.28 2.08
100 101 0.249657 GAGGGCTTGCTGTCGATAGG 60.250 60.000 11.42 0.00 0.00 2.57
101 102 1.227674 GGGCTTGCTGTCGATAGGG 60.228 63.158 11.42 0.00 0.00 3.53
102 103 1.227674 GGCTTGCTGTCGATAGGGG 60.228 63.158 11.42 0.00 0.00 4.79
103 104 1.522569 GCTTGCTGTCGATAGGGGT 59.477 57.895 11.42 0.00 0.00 4.95
104 105 0.811616 GCTTGCTGTCGATAGGGGTG 60.812 60.000 11.42 0.00 0.00 4.61
105 106 0.179073 CTTGCTGTCGATAGGGGTGG 60.179 60.000 11.42 0.00 0.00 4.61
106 107 0.616395 TTGCTGTCGATAGGGGTGGA 60.616 55.000 11.42 0.00 0.00 4.02
107 108 0.616395 TGCTGTCGATAGGGGTGGAA 60.616 55.000 11.42 0.00 0.00 3.53
108 109 0.105039 GCTGTCGATAGGGGTGGAAG 59.895 60.000 11.42 0.00 0.00 3.46
109 110 1.776662 CTGTCGATAGGGGTGGAAGA 58.223 55.000 0.40 0.00 0.00 2.87
110 111 1.683917 CTGTCGATAGGGGTGGAAGAG 59.316 57.143 0.40 0.00 0.00 2.85
111 112 1.286849 TGTCGATAGGGGTGGAAGAGA 59.713 52.381 0.00 0.00 0.00 3.10
112 113 2.291996 TGTCGATAGGGGTGGAAGAGAA 60.292 50.000 0.00 0.00 0.00 2.87
113 114 2.966516 GTCGATAGGGGTGGAAGAGAAT 59.033 50.000 0.00 0.00 0.00 2.40
114 115 2.965831 TCGATAGGGGTGGAAGAGAATG 59.034 50.000 0.00 0.00 0.00 2.67
115 116 2.037772 CGATAGGGGTGGAAGAGAATGG 59.962 54.545 0.00 0.00 0.00 3.16
116 117 1.213296 TAGGGGTGGAAGAGAATGGC 58.787 55.000 0.00 0.00 0.00 4.40
117 118 1.076705 GGGGTGGAAGAGAATGGCC 60.077 63.158 0.00 0.00 0.00 5.36
118 119 1.691219 GGGTGGAAGAGAATGGCCA 59.309 57.895 8.56 8.56 0.00 5.36
119 120 0.039618 GGGTGGAAGAGAATGGCCAA 59.960 55.000 10.96 0.00 31.18 4.52
120 121 1.342374 GGGTGGAAGAGAATGGCCAAT 60.342 52.381 10.96 0.00 31.18 3.16
121 122 1.753073 GGTGGAAGAGAATGGCCAATG 59.247 52.381 10.96 0.00 31.18 2.82
122 123 2.450476 GTGGAAGAGAATGGCCAATGT 58.550 47.619 10.96 0.00 31.18 2.71
123 124 2.165030 GTGGAAGAGAATGGCCAATGTG 59.835 50.000 10.96 0.00 31.18 3.21
124 125 1.753073 GGAAGAGAATGGCCAATGTGG 59.247 52.381 10.96 0.00 41.55 4.17
133 134 3.101209 CCAATGTGGCATCGACGG 58.899 61.111 0.00 0.00 0.00 4.79
134 135 2.472059 CCAATGTGGCATCGACGGG 61.472 63.158 0.00 0.00 0.00 5.28
135 136 1.745115 CAATGTGGCATCGACGGGT 60.745 57.895 0.00 0.00 0.00 5.28
136 137 1.745115 AATGTGGCATCGACGGGTG 60.745 57.895 0.00 0.00 0.00 4.61
137 138 3.680620 ATGTGGCATCGACGGGTGG 62.681 63.158 0.00 0.00 0.00 4.61
140 141 4.832608 GGCATCGACGGGTGGGTC 62.833 72.222 0.00 0.00 0.00 4.46
141 142 4.077184 GCATCGACGGGTGGGTCA 62.077 66.667 0.00 0.00 36.73 4.02
142 143 2.660206 CATCGACGGGTGGGTCAA 59.340 61.111 0.00 0.00 36.73 3.18
143 144 1.447838 CATCGACGGGTGGGTCAAG 60.448 63.158 0.00 0.00 36.73 3.02
144 145 1.911766 ATCGACGGGTGGGTCAAGT 60.912 57.895 0.00 0.00 36.73 3.16
145 146 2.167398 ATCGACGGGTGGGTCAAGTG 62.167 60.000 0.00 0.00 36.73 3.16
146 147 2.032071 GACGGGTGGGTCAAGTGG 59.968 66.667 0.00 0.00 36.91 4.00
147 148 2.446994 ACGGGTGGGTCAAGTGGA 60.447 61.111 0.00 0.00 0.00 4.02
148 149 2.347490 CGGGTGGGTCAAGTGGAG 59.653 66.667 0.00 0.00 0.00 3.86
149 150 2.757077 GGGTGGGTCAAGTGGAGG 59.243 66.667 0.00 0.00 0.00 4.30
150 151 1.846124 GGGTGGGTCAAGTGGAGGA 60.846 63.158 0.00 0.00 0.00 3.71
151 152 1.679898 GGTGGGTCAAGTGGAGGAG 59.320 63.158 0.00 0.00 0.00 3.69
152 153 1.128188 GGTGGGTCAAGTGGAGGAGT 61.128 60.000 0.00 0.00 0.00 3.85
153 154 1.640917 GTGGGTCAAGTGGAGGAGTA 58.359 55.000 0.00 0.00 0.00 2.59
154 155 1.550976 GTGGGTCAAGTGGAGGAGTAG 59.449 57.143 0.00 0.00 0.00 2.57
155 156 1.196012 GGGTCAAGTGGAGGAGTAGG 58.804 60.000 0.00 0.00 0.00 3.18
156 157 0.537653 GGTCAAGTGGAGGAGTAGGC 59.462 60.000 0.00 0.00 0.00 3.93
157 158 0.173708 GTCAAGTGGAGGAGTAGGCG 59.826 60.000 0.00 0.00 0.00 5.52
158 159 1.153549 CAAGTGGAGGAGTAGGCGC 60.154 63.158 0.00 0.00 0.00 6.53
159 160 1.609501 AAGTGGAGGAGTAGGCGCA 60.610 57.895 10.83 0.00 0.00 6.09
160 161 1.889530 AAGTGGAGGAGTAGGCGCAC 61.890 60.000 10.83 0.00 0.00 5.34
161 162 3.449227 TGGAGGAGTAGGCGCACG 61.449 66.667 10.83 0.00 0.00 5.34
162 163 3.450115 GGAGGAGTAGGCGCACGT 61.450 66.667 10.83 0.00 0.00 4.49
163 164 2.102553 GAGGAGTAGGCGCACGTC 59.897 66.667 10.83 0.00 0.00 4.34
164 165 3.412879 GAGGAGTAGGCGCACGTCC 62.413 68.421 10.83 9.56 0.00 4.79
165 166 4.849329 GGAGTAGGCGCACGTCCG 62.849 72.222 10.83 0.00 0.00 4.79
166 167 4.112341 GAGTAGGCGCACGTCCGT 62.112 66.667 10.83 0.00 0.00 4.69
167 168 3.621892 GAGTAGGCGCACGTCCGTT 62.622 63.158 10.83 0.00 0.00 4.44
168 169 3.475774 GTAGGCGCACGTCCGTTG 61.476 66.667 10.83 0.00 0.00 4.10
178 179 3.698463 GTCCGTTGCGTGTCCGTG 61.698 66.667 0.00 0.00 36.15 4.94
179 180 4.210093 TCCGTTGCGTGTCCGTGT 62.210 61.111 0.00 0.00 36.15 4.49
180 181 3.698463 CCGTTGCGTGTCCGTGTC 61.698 66.667 0.00 0.00 36.15 3.67
181 182 4.042060 CGTTGCGTGTCCGTGTCG 62.042 66.667 0.00 0.00 36.15 4.35
182 183 2.656007 GTTGCGTGTCCGTGTCGA 60.656 61.111 0.00 0.00 36.15 4.20
183 184 2.656007 TTGCGTGTCCGTGTCGAC 60.656 61.111 9.11 9.11 36.15 4.20
184 185 4.967730 TGCGTGTCCGTGTCGACG 62.968 66.667 11.62 0.00 45.67 5.12
186 187 4.967730 CGTGTCCGTGTCGACGCA 62.968 66.667 27.16 7.48 44.68 5.24
187 188 2.656007 GTGTCCGTGTCGACGCAA 60.656 61.111 27.16 12.94 44.68 4.85
188 189 2.104530 TGTCCGTGTCGACGCAAA 59.895 55.556 27.16 12.58 44.68 3.68
189 190 1.300311 TGTCCGTGTCGACGCAAAT 60.300 52.632 27.16 0.00 44.68 2.32
190 191 1.279527 TGTCCGTGTCGACGCAAATC 61.280 55.000 27.16 14.70 44.68 2.17
191 192 1.007154 TCCGTGTCGACGCAAATCA 60.007 52.632 27.16 4.35 44.68 2.57
192 193 1.006825 TCCGTGTCGACGCAAATCAG 61.007 55.000 27.16 10.70 44.68 2.90
193 194 1.006825 CCGTGTCGACGCAAATCAGA 61.007 55.000 27.16 0.00 44.68 3.27
194 195 0.091344 CGTGTCGACGCAAATCAGAC 59.909 55.000 27.16 8.22 39.10 3.51
195 196 1.419374 GTGTCGACGCAAATCAGACT 58.581 50.000 23.67 0.00 33.40 3.24
196 197 1.387084 GTGTCGACGCAAATCAGACTC 59.613 52.381 23.67 0.00 33.40 3.36
197 198 1.000717 TGTCGACGCAAATCAGACTCA 60.001 47.619 11.62 0.00 33.40 3.41
198 199 2.058798 GTCGACGCAAATCAGACTCAA 58.941 47.619 0.00 0.00 0.00 3.02
199 200 2.475111 GTCGACGCAAATCAGACTCAAA 59.525 45.455 0.00 0.00 0.00 2.69
200 201 3.059868 GTCGACGCAAATCAGACTCAAAA 60.060 43.478 0.00 0.00 0.00 2.44
201 202 3.745975 TCGACGCAAATCAGACTCAAAAT 59.254 39.130 0.00 0.00 0.00 1.82
202 203 4.213270 TCGACGCAAATCAGACTCAAAATT 59.787 37.500 0.00 0.00 0.00 1.82
203 204 4.319115 CGACGCAAATCAGACTCAAAATTG 59.681 41.667 0.00 0.00 0.00 2.32
204 205 5.437289 ACGCAAATCAGACTCAAAATTGA 57.563 34.783 0.00 0.00 35.57 2.57
216 217 4.782019 TCAAAATTGAGTCGGAAATGGG 57.218 40.909 0.00 0.00 32.50 4.00
217 218 4.148838 TCAAAATTGAGTCGGAAATGGGT 58.851 39.130 0.00 0.00 32.50 4.51
218 219 4.586841 TCAAAATTGAGTCGGAAATGGGTT 59.413 37.500 0.00 0.00 32.50 4.11
219 220 4.519540 AAATTGAGTCGGAAATGGGTTG 57.480 40.909 0.00 0.00 0.00 3.77
220 221 1.904287 TTGAGTCGGAAATGGGTTGG 58.096 50.000 0.00 0.00 0.00 3.77
221 222 0.608035 TGAGTCGGAAATGGGTTGGC 60.608 55.000 0.00 0.00 0.00 4.52
222 223 1.644786 GAGTCGGAAATGGGTTGGCG 61.645 60.000 0.00 0.00 0.00 5.69
223 224 2.360600 TCGGAAATGGGTTGGCGG 60.361 61.111 0.00 0.00 0.00 6.13
224 225 3.448340 CGGAAATGGGTTGGCGGG 61.448 66.667 0.00 0.00 0.00 6.13
225 226 2.283604 GGAAATGGGTTGGCGGGT 60.284 61.111 0.00 0.00 0.00 5.28
226 227 2.645192 GGAAATGGGTTGGCGGGTG 61.645 63.158 0.00 0.00 0.00 4.61
227 228 2.603171 AAATGGGTTGGCGGGTGG 60.603 61.111 0.00 0.00 0.00 4.61
228 229 3.153629 AAATGGGTTGGCGGGTGGA 62.154 57.895 0.00 0.00 0.00 4.02
229 230 3.879180 AATGGGTTGGCGGGTGGAC 62.879 63.158 0.00 0.00 0.00 4.02
232 233 4.629523 GGTTGGCGGGTGGACGAA 62.630 66.667 0.00 0.00 35.47 3.85
233 234 2.592287 GTTGGCGGGTGGACGAAA 60.592 61.111 0.00 0.00 35.47 3.46
234 235 2.188161 GTTGGCGGGTGGACGAAAA 61.188 57.895 0.00 0.00 35.47 2.29
235 236 1.453379 TTGGCGGGTGGACGAAAAA 60.453 52.632 0.00 0.00 35.47 1.94
236 237 1.726533 TTGGCGGGTGGACGAAAAAC 61.727 55.000 0.00 0.00 35.47 2.43
238 239 2.246042 GCGGGTGGACGAAAAACGA 61.246 57.895 0.00 0.00 45.77 3.85
239 240 1.774046 GCGGGTGGACGAAAAACGAA 61.774 55.000 0.00 0.00 45.77 3.85
240 241 0.041926 CGGGTGGACGAAAAACGAAC 60.042 55.000 0.00 0.00 45.77 3.95
241 242 1.015868 GGGTGGACGAAAAACGAACA 58.984 50.000 0.00 0.00 45.77 3.18
242 243 1.268184 GGGTGGACGAAAAACGAACAC 60.268 52.381 0.00 0.00 45.77 3.32
243 244 1.592830 GGTGGACGAAAAACGAACACG 60.593 52.381 0.00 0.00 45.05 4.49
244 245 1.060986 GTGGACGAAAAACGAACACGT 59.939 47.619 0.00 0.00 45.77 4.49
245 246 1.060842 TGGACGAAAAACGAACACGTG 59.939 47.619 15.48 15.48 45.77 4.49
246 247 1.060986 GGACGAAAAACGAACACGTGT 59.939 47.619 17.22 17.22 45.77 4.49
247 248 2.474361 GGACGAAAAACGAACACGTGTT 60.474 45.455 32.77 32.77 45.77 3.32
261 262 2.471072 CGTGTTCGTTTGAGTCGATG 57.529 50.000 0.00 0.00 37.18 3.84
262 263 1.460267 CGTGTTCGTTTGAGTCGATGC 60.460 52.381 0.00 0.00 37.18 3.91
263 264 0.781787 TGTTCGTTTGAGTCGATGCG 59.218 50.000 0.00 0.00 37.18 4.73
264 265 0.782384 GTTCGTTTGAGTCGATGCGT 59.218 50.000 0.00 0.00 37.18 5.24
265 266 1.191647 GTTCGTTTGAGTCGATGCGTT 59.808 47.619 0.00 0.00 37.18 4.84
266 267 0.781787 TCGTTTGAGTCGATGCGTTG 59.218 50.000 0.00 0.00 32.30 4.10
267 268 0.179250 CGTTTGAGTCGATGCGTTGG 60.179 55.000 0.00 0.00 0.00 3.77
268 269 1.144969 GTTTGAGTCGATGCGTTGGA 58.855 50.000 0.00 0.00 0.00 3.53
269 270 1.136336 GTTTGAGTCGATGCGTTGGAC 60.136 52.381 0.00 3.56 0.00 4.02
270 271 0.669318 TTGAGTCGATGCGTTGGACC 60.669 55.000 7.27 0.00 0.00 4.46
271 272 2.126071 AGTCGATGCGTTGGACCG 60.126 61.111 7.27 0.00 0.00 4.79
272 273 2.126228 GTCGATGCGTTGGACCGA 60.126 61.111 0.00 0.00 0.00 4.69
273 274 1.518572 GTCGATGCGTTGGACCGAT 60.519 57.895 0.00 0.00 0.00 4.18
274 275 1.082117 GTCGATGCGTTGGACCGATT 61.082 55.000 0.00 0.00 0.00 3.34
275 276 0.390603 TCGATGCGTTGGACCGATTT 60.391 50.000 0.00 0.00 0.00 2.17
276 277 0.446222 CGATGCGTTGGACCGATTTT 59.554 50.000 0.00 0.00 0.00 1.82
277 278 1.135803 CGATGCGTTGGACCGATTTTT 60.136 47.619 0.00 0.00 0.00 1.94
278 279 2.515912 GATGCGTTGGACCGATTTTTC 58.484 47.619 0.00 0.00 0.00 2.29
279 280 1.600023 TGCGTTGGACCGATTTTTCT 58.400 45.000 0.00 0.00 0.00 2.52
280 281 2.768698 TGCGTTGGACCGATTTTTCTA 58.231 42.857 0.00 0.00 0.00 2.10
281 282 3.340034 TGCGTTGGACCGATTTTTCTAT 58.660 40.909 0.00 0.00 0.00 1.98
282 283 3.754323 TGCGTTGGACCGATTTTTCTATT 59.246 39.130 0.00 0.00 0.00 1.73
283 284 4.142773 TGCGTTGGACCGATTTTTCTATTC 60.143 41.667 0.00 0.00 0.00 1.75
284 285 4.729746 GCGTTGGACCGATTTTTCTATTCC 60.730 45.833 0.00 0.00 0.00 3.01
285 286 4.493545 CGTTGGACCGATTTTTCTATTCCG 60.494 45.833 0.00 0.00 0.00 4.30
286 287 4.475051 TGGACCGATTTTTCTATTCCGA 57.525 40.909 0.00 0.00 0.00 4.55
287 288 4.186159 TGGACCGATTTTTCTATTCCGAC 58.814 43.478 0.00 0.00 0.00 4.79
288 289 3.244579 GGACCGATTTTTCTATTCCGACG 59.755 47.826 0.00 0.00 0.00 5.12
289 290 4.107622 GACCGATTTTTCTATTCCGACGA 58.892 43.478 0.00 0.00 0.00 4.20
290 291 3.861689 ACCGATTTTTCTATTCCGACGAC 59.138 43.478 0.00 0.00 0.00 4.34
291 292 3.244579 CCGATTTTTCTATTCCGACGACC 59.755 47.826 0.00 0.00 0.00 4.79
292 293 4.110482 CGATTTTTCTATTCCGACGACCT 58.890 43.478 0.00 0.00 0.00 3.85
293 294 5.276270 CGATTTTTCTATTCCGACGACCTA 58.724 41.667 0.00 0.00 0.00 3.08
294 295 5.745294 CGATTTTTCTATTCCGACGACCTAA 59.255 40.000 0.00 0.00 0.00 2.69
295 296 6.254157 CGATTTTTCTATTCCGACGACCTAAA 59.746 38.462 0.00 0.00 0.00 1.85
296 297 7.042925 CGATTTTTCTATTCCGACGACCTAAAT 60.043 37.037 0.00 0.00 0.00 1.40
297 298 9.252962 GATTTTTCTATTCCGACGACCTAAATA 57.747 33.333 0.00 0.00 0.00 1.40
298 299 8.638685 TTTTTCTATTCCGACGACCTAAATAG 57.361 34.615 0.00 2.61 33.29 1.73
299 300 7.572523 TTTCTATTCCGACGACCTAAATAGA 57.427 36.000 0.00 4.79 37.23 1.98
300 301 7.756395 TTCTATTCCGACGACCTAAATAGAT 57.244 36.000 0.00 0.00 38.22 1.98
301 302 8.853077 TTCTATTCCGACGACCTAAATAGATA 57.147 34.615 0.00 0.00 38.22 1.98
302 303 8.261492 TCTATTCCGACGACCTAAATAGATAC 57.739 38.462 0.00 0.00 35.23 2.24
303 304 4.997905 TCCGACGACCTAAATAGATACG 57.002 45.455 0.00 0.00 0.00 3.06
304 305 4.380531 TCCGACGACCTAAATAGATACGT 58.619 43.478 0.00 0.00 35.31 3.57
305 306 4.212004 TCCGACGACCTAAATAGATACGTG 59.788 45.833 0.00 0.00 32.88 4.49
306 307 3.904824 CGACGACCTAAATAGATACGTGC 59.095 47.826 0.00 0.00 32.88 5.34
307 308 3.881795 ACGACCTAAATAGATACGTGCG 58.118 45.455 0.00 0.00 0.00 5.34
308 309 3.231965 CGACCTAAATAGATACGTGCGG 58.768 50.000 0.00 0.00 0.00 5.69
309 310 3.058708 CGACCTAAATAGATACGTGCGGA 60.059 47.826 0.00 0.00 0.00 5.54
310 311 4.225208 GACCTAAATAGATACGTGCGGAC 58.775 47.826 0.00 0.00 0.00 4.79
322 323 2.442189 GTGCGGACGAAATGAATCAG 57.558 50.000 0.00 0.00 0.00 2.90
323 324 1.062587 GTGCGGACGAAATGAATCAGG 59.937 52.381 0.00 0.00 0.00 3.86
324 325 0.657840 GCGGACGAAATGAATCAGGG 59.342 55.000 0.00 0.00 0.00 4.45
325 326 0.657840 CGGACGAAATGAATCAGGGC 59.342 55.000 0.00 0.00 0.00 5.19
326 327 0.657840 GGACGAAATGAATCAGGGCG 59.342 55.000 0.00 0.00 0.00 6.13
327 328 1.651987 GACGAAATGAATCAGGGCGA 58.348 50.000 8.07 0.00 0.00 5.54
328 329 2.006888 GACGAAATGAATCAGGGCGAA 58.993 47.619 8.07 0.00 0.00 4.70
329 330 2.614057 GACGAAATGAATCAGGGCGAAT 59.386 45.455 8.07 0.00 0.00 3.34
330 331 3.804036 ACGAAATGAATCAGGGCGAATA 58.196 40.909 8.07 0.00 0.00 1.75
331 332 4.389374 ACGAAATGAATCAGGGCGAATAT 58.611 39.130 8.07 0.00 0.00 1.28
332 333 5.547465 ACGAAATGAATCAGGGCGAATATA 58.453 37.500 8.07 0.00 0.00 0.86
333 334 5.995282 ACGAAATGAATCAGGGCGAATATAA 59.005 36.000 8.07 0.00 0.00 0.98
334 335 6.485313 ACGAAATGAATCAGGGCGAATATAAA 59.515 34.615 8.07 0.00 0.00 1.40
335 336 6.797033 CGAAATGAATCAGGGCGAATATAAAC 59.203 38.462 0.00 0.00 0.00 2.01
336 337 5.862924 ATGAATCAGGGCGAATATAAACG 57.137 39.130 0.00 0.00 0.00 3.60
337 338 4.062293 TGAATCAGGGCGAATATAAACGG 58.938 43.478 0.00 0.00 0.00 4.44
338 339 4.202274 TGAATCAGGGCGAATATAAACGGA 60.202 41.667 0.00 0.00 0.00 4.69
339 340 3.823281 TCAGGGCGAATATAAACGGAA 57.177 42.857 0.00 0.00 0.00 4.30
340 341 3.460103 TCAGGGCGAATATAAACGGAAC 58.540 45.455 0.00 0.00 0.00 3.62
341 342 3.118702 TCAGGGCGAATATAAACGGAACA 60.119 43.478 0.00 0.00 0.00 3.18
342 343 3.623960 CAGGGCGAATATAAACGGAACAA 59.376 43.478 0.00 0.00 0.00 2.83
343 344 4.095185 CAGGGCGAATATAAACGGAACAAA 59.905 41.667 0.00 0.00 0.00 2.83
344 345 4.701171 AGGGCGAATATAAACGGAACAAAA 59.299 37.500 0.00 0.00 0.00 2.44
345 346 5.358725 AGGGCGAATATAAACGGAACAAAAT 59.641 36.000 0.00 0.00 0.00 1.82
346 347 5.457473 GGGCGAATATAAACGGAACAAAATG 59.543 40.000 0.00 0.00 0.00 2.32
582 704 3.442076 TCCTTCTTCTCCCCTTGTACTC 58.558 50.000 0.00 0.00 0.00 2.59
649 771 2.050350 TCGTCCTCCACACGATCCC 61.050 63.158 0.00 0.00 41.27 3.85
667 789 1.605058 CCACCTATATAGCCGCGCCT 61.605 60.000 0.00 0.00 0.00 5.52
735 857 3.795041 CCAGCCAGCCAGCTAGCT 61.795 66.667 12.68 12.68 42.61 3.32
767 894 0.107831 GTACAGTCAAGTGGCCACCA 59.892 55.000 32.29 14.07 0.00 4.17
788 915 0.105709 CCCCTTCTCTCCCTCTCTCC 60.106 65.000 0.00 0.00 0.00 3.71
792 919 1.852965 CTTCTCTCCCTCTCTCCCTCT 59.147 57.143 0.00 0.00 0.00 3.69
807 934 1.688197 CCCTCTCTCTCTCTCATTGCC 59.312 57.143 0.00 0.00 0.00 4.52
810 937 0.249405 CTCTCTCTCTCATTGCCGCC 60.249 60.000 0.00 0.00 0.00 6.13
877 1004 3.943034 CCTCTCGATCGTCGCGCT 61.943 66.667 15.94 0.00 40.21 5.92
878 1005 2.424479 CTCTCGATCGTCGCGCTC 60.424 66.667 15.94 0.00 40.21 5.03
892 1019 3.533691 GCTCGTACGTGCGTGCTC 61.534 66.667 34.60 15.48 44.62 4.26
903 1030 2.445438 GCGTGCTCGAAGCTACACC 61.445 63.158 13.13 0.00 42.97 4.16
945 1072 1.436336 CCGCCGGACCGATATATCC 59.564 63.158 17.49 0.00 0.00 2.59
994 1124 3.537580 AGGAGGAGATCGCTCGATATAC 58.462 50.000 4.63 2.81 42.25 1.47
1252 1405 6.914215 CCAAGTAAGCAAAGCATACATACATG 59.086 38.462 7.08 0.00 35.54 3.21
1253 1406 7.415541 CCAAGTAAGCAAAGCATACATACATGT 60.416 37.037 2.69 2.69 44.48 3.21
1270 1423 3.508793 ACATGTTGCTCCTTCTTCCATTG 59.491 43.478 0.00 0.00 0.00 2.82
1273 1426 3.960102 TGTTGCTCCTTCTTCCATTGTTT 59.040 39.130 0.00 0.00 0.00 2.83
1446 1599 0.243907 ACGACATCAAGTCCGACCTG 59.756 55.000 0.00 0.00 44.66 4.00
1528 1681 3.711541 ATCGCCCTGGTACGTTCGC 62.712 63.158 0.00 0.00 0.00 4.70
1546 1699 2.048597 TCGCTACCACGTTGCTGG 60.049 61.111 0.00 0.00 37.33 4.85
1578 1731 5.482686 GCAGATGCAAACCAAAAGAAAAA 57.517 34.783 0.00 0.00 41.59 1.94
1600 1753 6.944234 AAAGAAAATGAGAAAAGACCGAGT 57.056 33.333 0.00 0.00 0.00 4.18
1601 1754 5.931441 AGAAAATGAGAAAAGACCGAGTG 57.069 39.130 0.00 0.00 0.00 3.51
1602 1755 5.368989 AGAAAATGAGAAAAGACCGAGTGT 58.631 37.500 0.00 0.00 0.00 3.55
1686 1862 0.465705 ATTGGCACATCGATCGACCT 59.534 50.000 22.06 1.89 39.30 3.85
1740 1917 4.864334 GCAGGAGGGACGGCATGG 62.864 72.222 0.00 0.00 0.00 3.66
1802 1979 2.189521 GACATCCCCACGGCGATT 59.810 61.111 16.62 0.00 0.00 3.34
1868 2045 2.170607 CCTCATGGGTACATTTCGACCT 59.829 50.000 0.00 0.00 34.35 3.85
1886 2066 2.229792 CCTCCCTCTCTCTCTTCATCG 58.770 57.143 0.00 0.00 0.00 3.84
1887 2067 2.229792 CTCCCTCTCTCTCTTCATCGG 58.770 57.143 0.00 0.00 0.00 4.18
1897 2077 2.630098 TCTCTTCATCGGCTATCTTGGG 59.370 50.000 0.00 0.00 0.00 4.12
1900 2080 3.199946 TCTTCATCGGCTATCTTGGGTTT 59.800 43.478 0.00 0.00 0.00 3.27
1901 2081 3.644966 TCATCGGCTATCTTGGGTTTT 57.355 42.857 0.00 0.00 0.00 2.43
1902 2082 3.963129 TCATCGGCTATCTTGGGTTTTT 58.037 40.909 0.00 0.00 0.00 1.94
1930 2110 7.293771 ACCCCAAAAATAAAAACTATCTTGGGT 59.706 33.333 13.90 0.00 46.91 4.51
1931 2111 8.160765 CCCCAAAAATAAAAACTATCTTGGGTT 58.839 33.333 13.90 0.00 46.91 4.11
1932 2112 9.567776 CCCAAAAATAAAAACTATCTTGGGTTT 57.432 29.630 8.14 0.00 44.46 3.27
1964 2144 3.100671 ACTAGCAGTCCTTTGACCTAGG 58.899 50.000 7.41 7.41 42.81 3.02
1989 2172 0.662619 CGGCGTATTCCATGTGCATT 59.337 50.000 0.00 0.00 0.00 3.56
2103 2298 2.935849 TCGCCGTGTATCTAACGTCTTA 59.064 45.455 0.00 0.00 39.38 2.10
2104 2299 3.373748 TCGCCGTGTATCTAACGTCTTAA 59.626 43.478 0.00 0.00 39.38 1.85
2105 2300 4.035558 TCGCCGTGTATCTAACGTCTTAAT 59.964 41.667 0.00 0.00 39.38 1.40
2106 2301 4.736793 CGCCGTGTATCTAACGTCTTAATT 59.263 41.667 0.00 0.00 39.38 1.40
2162 2371 9.478238 TCAACCAAGTACCTAGTGTATGTATAA 57.522 33.333 0.00 0.00 0.00 0.98
2264 2473 8.465999 TCAAAATTTCAACTGCTGTAAGAAAGA 58.534 29.630 20.65 13.68 35.41 2.52
2267 2476 8.634475 AATTTCAACTGCTGTAAGAAAGAAAC 57.366 30.769 20.65 0.00 35.41 2.78
2272 2481 7.554835 TCAACTGCTGTAAGAAAGAAACCTTAA 59.445 33.333 0.00 0.00 34.07 1.85
2274 2483 8.465273 ACTGCTGTAAGAAAGAAACCTTAAAT 57.535 30.769 0.00 0.00 34.07 1.40
2291 2500 8.209917 ACCTTAAATTAATCTAAGCACTTCCG 57.790 34.615 3.38 0.00 0.00 4.30
2299 2508 2.143122 CTAAGCACTTCCGTTGCAAGA 58.857 47.619 0.00 0.00 0.00 3.02
2300 2509 1.609208 AAGCACTTCCGTTGCAAGAT 58.391 45.000 0.00 0.00 0.00 2.40
2544 2775 5.482908 GAGCTACTTCAACCAGATCAAGAA 58.517 41.667 0.00 0.00 0.00 2.52
2723 2954 0.462759 GATCAGGAGAAACTGCCGGG 60.463 60.000 2.18 0.00 38.36 5.73
2741 2972 5.181009 GCCGGGTTACAAACTAAACTAGAT 58.819 41.667 2.18 0.00 0.00 1.98
2742 2973 5.064325 GCCGGGTTACAAACTAAACTAGATG 59.936 44.000 2.18 0.00 0.00 2.90
2743 2974 5.583457 CCGGGTTACAAACTAAACTAGATGG 59.417 44.000 0.00 0.00 0.00 3.51
2744 2975 6.168389 CGGGTTACAAACTAAACTAGATGGT 58.832 40.000 0.00 0.00 0.00 3.55
2745 2976 7.322664 CGGGTTACAAACTAAACTAGATGGTA 58.677 38.462 0.00 0.00 0.00 3.25
2746 2977 7.983484 CGGGTTACAAACTAAACTAGATGGTAT 59.017 37.037 0.00 0.00 0.00 2.73
2758 2989 8.475331 AAACTAGATGGTATACGACAAGTTTG 57.525 34.615 16.41 0.00 34.38 2.93
2818 3051 4.978099 AGAGTATACATGGCCATTTGAGG 58.022 43.478 17.92 7.02 0.00 3.86
2908 3142 2.015587 GTAGTCGGTCCACCTGAGTAG 58.984 57.143 0.00 0.00 30.76 2.57
2909 3143 0.966370 AGTCGGTCCACCTGAGTAGC 60.966 60.000 0.00 0.00 0.00 3.58
2910 3144 1.076014 TCGGTCCACCTGAGTAGCA 59.924 57.895 0.00 0.00 0.00 3.49
2911 3145 0.324368 TCGGTCCACCTGAGTAGCAT 60.324 55.000 0.00 0.00 0.00 3.79
2981 3215 5.428496 AATAAGCATTCCATGATGTGTCG 57.572 39.130 0.00 0.00 0.00 4.35
2984 3218 2.876550 AGCATTCCATGATGTGTCGATG 59.123 45.455 0.00 0.00 0.00 3.84
2986 3220 1.667236 TTCCATGATGTGTCGATGCC 58.333 50.000 0.00 0.00 0.00 4.40
2987 3221 0.530431 TCCATGATGTGTCGATGCCG 60.530 55.000 0.00 0.00 37.07 5.69
2989 3223 1.009078 CATGATGTGTCGATGCCGTT 58.991 50.000 0.00 0.00 37.05 4.44
2990 3224 1.009078 ATGATGTGTCGATGCCGTTG 58.991 50.000 0.00 0.00 37.05 4.10
2994 3228 0.306228 TGTGTCGATGCCGTTGTTTG 59.694 50.000 0.00 0.00 37.05 2.93
2996 3230 1.163420 TGTCGATGCCGTTGTTTGCT 61.163 50.000 0.00 0.00 37.05 3.91
2997 3231 0.452784 GTCGATGCCGTTGTTTGCTC 60.453 55.000 0.00 0.00 37.05 4.26
2998 3232 0.882484 TCGATGCCGTTGTTTGCTCA 60.882 50.000 0.00 0.00 37.05 4.26
2999 3233 0.453282 CGATGCCGTTGTTTGCTCAG 60.453 55.000 0.00 0.00 0.00 3.35
3000 3234 0.874390 GATGCCGTTGTTTGCTCAGA 59.126 50.000 0.00 0.00 0.00 3.27
3001 3235 1.266718 GATGCCGTTGTTTGCTCAGAA 59.733 47.619 0.00 0.00 0.00 3.02
3002 3236 0.662619 TGCCGTTGTTTGCTCAGAAG 59.337 50.000 0.00 0.00 0.00 2.85
3023 3257 9.761504 CAGAAGAGATCATCATACAATACAAGT 57.238 33.333 0.00 0.00 0.00 3.16
3024 3258 9.761504 AGAAGAGATCATCATACAATACAAGTG 57.238 33.333 0.00 0.00 0.00 3.16
3025 3259 9.539825 GAAGAGATCATCATACAATACAAGTGT 57.460 33.333 0.00 0.00 0.00 3.55
3027 3261 9.973450 AGAGATCATCATACAATACAAGTGTAC 57.027 33.333 0.00 0.00 34.41 2.90
3028 3262 8.803201 AGATCATCATACAATACAAGTGTACG 57.197 34.615 0.00 0.00 34.41 3.67
3029 3263 8.630037 AGATCATCATACAATACAAGTGTACGA 58.370 33.333 0.00 0.00 34.41 3.43
3030 3264 9.411801 GATCATCATACAATACAAGTGTACGAT 57.588 33.333 0.00 0.00 35.39 3.73
3031 3265 9.764363 ATCATCATACAATACAAGTGTACGATT 57.236 29.630 0.00 0.00 33.39 3.34
3079 3313 7.684937 AATGAAATGACTTTCCTCTCAAGAG 57.315 36.000 0.00 0.00 40.09 2.85
3144 3378 2.906354 AGCAATTACTAAGGCTGGTCG 58.094 47.619 0.00 0.00 34.83 4.79
3145 3379 2.236395 AGCAATTACTAAGGCTGGTCGT 59.764 45.455 0.00 0.00 34.83 4.34
3146 3380 3.449737 AGCAATTACTAAGGCTGGTCGTA 59.550 43.478 0.00 0.00 34.83 3.43
3147 3381 4.081309 AGCAATTACTAAGGCTGGTCGTAA 60.081 41.667 0.00 0.00 34.83 3.18
3148 3382 4.814771 GCAATTACTAAGGCTGGTCGTAAT 59.185 41.667 0.00 0.00 33.55 1.89
3149 3383 5.277345 GCAATTACTAAGGCTGGTCGTAATG 60.277 44.000 9.99 7.21 32.78 1.90
3150 3384 2.981859 ACTAAGGCTGGTCGTAATGG 57.018 50.000 0.00 0.00 0.00 3.16
3151 3385 1.134491 ACTAAGGCTGGTCGTAATGGC 60.134 52.381 0.00 0.00 0.00 4.40
3152 3386 0.179094 TAAGGCTGGTCGTAATGGCG 60.179 55.000 0.00 0.00 0.00 5.69
3153 3387 1.895020 AAGGCTGGTCGTAATGGCGA 61.895 55.000 0.00 0.00 38.68 5.54
3154 3388 1.883084 GGCTGGTCGTAATGGCGAG 60.883 63.158 0.00 0.00 41.85 5.03
3155 3389 1.153628 GCTGGTCGTAATGGCGAGT 60.154 57.895 0.00 0.00 41.85 4.18
3156 3390 0.101759 GCTGGTCGTAATGGCGAGTA 59.898 55.000 0.00 0.00 41.85 2.59
3157 3391 1.269621 GCTGGTCGTAATGGCGAGTAT 60.270 52.381 0.00 0.00 41.85 2.12
3158 3392 2.662700 CTGGTCGTAATGGCGAGTATC 58.337 52.381 0.00 0.00 41.85 2.24
3159 3393 2.025898 TGGTCGTAATGGCGAGTATCA 58.974 47.619 0.00 0.00 41.85 2.15
3160 3394 2.626266 TGGTCGTAATGGCGAGTATCAT 59.374 45.455 0.00 0.00 41.85 2.45
3161 3395 2.987149 GGTCGTAATGGCGAGTATCATG 59.013 50.000 0.00 0.00 41.85 3.07
3162 3396 3.552273 GGTCGTAATGGCGAGTATCATGT 60.552 47.826 0.00 0.00 41.85 3.21
3163 3397 4.320714 GGTCGTAATGGCGAGTATCATGTA 60.321 45.833 0.00 0.00 41.85 2.29
3164 3398 4.615961 GTCGTAATGGCGAGTATCATGTAC 59.384 45.833 0.00 0.00 41.85 2.90
3165 3399 4.517832 TCGTAATGGCGAGTATCATGTACT 59.482 41.667 7.43 7.43 35.83 2.73
3166 3400 5.702209 TCGTAATGGCGAGTATCATGTACTA 59.298 40.000 7.63 0.00 35.83 1.82
3167 3401 6.022208 CGTAATGGCGAGTATCATGTACTAG 58.978 44.000 7.63 8.67 33.17 2.57
3168 3402 6.348295 CGTAATGGCGAGTATCATGTACTAGT 60.348 42.308 0.00 0.00 33.17 2.57
3169 3403 7.148523 CGTAATGGCGAGTATCATGTACTAGTA 60.149 40.741 0.00 0.00 33.17 1.82
3170 3404 7.704578 AATGGCGAGTATCATGTACTAGTAT 57.295 36.000 5.75 0.00 33.17 2.12
3171 3405 6.738832 TGGCGAGTATCATGTACTAGTATC 57.261 41.667 5.75 1.02 33.17 2.24
3172 3406 6.235664 TGGCGAGTATCATGTACTAGTATCA 58.764 40.000 5.75 6.74 33.17 2.15
3173 3407 6.884836 TGGCGAGTATCATGTACTAGTATCAT 59.115 38.462 5.75 8.69 33.17 2.45
3174 3408 8.044908 TGGCGAGTATCATGTACTAGTATCATA 58.955 37.037 5.75 0.00 33.17 2.15
3175 3409 8.336806 GGCGAGTATCATGTACTAGTATCATAC 58.663 40.741 5.75 9.74 33.17 2.39
3176 3410 8.880750 GCGAGTATCATGTACTAGTATCATACA 58.119 37.037 5.75 1.59 33.54 2.29
3225 3459 9.083422 ACATCTGTAGTGCATAGTATCATAAGT 57.917 33.333 0.00 0.00 0.00 2.24
3226 3460 9.920133 CATCTGTAGTGCATAGTATCATAAGTT 57.080 33.333 0.00 0.00 0.00 2.66
3262 3496 9.897744 GCTAACTTTATTTATTAGCATGCATGA 57.102 29.630 30.64 10.12 46.56 3.07
3273 3507 7.783090 ATTAGCATGCATGATACATAGTAGC 57.217 36.000 30.64 9.94 0.00 3.58
3274 3508 5.156608 AGCATGCATGATACATAGTAGCA 57.843 39.130 30.64 0.00 34.78 3.49
3275 3509 4.934001 AGCATGCATGATACATAGTAGCAC 59.066 41.667 30.64 6.96 32.92 4.40
3276 3510 4.692155 GCATGCATGATACATAGTAGCACA 59.308 41.667 30.64 0.00 32.92 4.57
3277 3511 5.353400 GCATGCATGATACATAGTAGCACAT 59.647 40.000 30.64 0.00 32.92 3.21
3278 3512 6.456584 GCATGCATGATACATAGTAGCACATC 60.457 42.308 30.64 1.71 32.92 3.06
3279 3513 6.100404 TGCATGATACATAGTAGCACATCA 57.900 37.500 0.00 0.00 0.00 3.07
3280 3514 6.704310 TGCATGATACATAGTAGCACATCAT 58.296 36.000 0.00 0.00 34.34 2.45
3281 3515 7.163441 TGCATGATACATAGTAGCACATCATT 58.837 34.615 0.00 0.00 32.29 2.57
3282 3516 7.662669 TGCATGATACATAGTAGCACATCATTT 59.337 33.333 0.00 0.00 32.29 2.32
3283 3517 9.154847 GCATGATACATAGTAGCACATCATTTA 57.845 33.333 0.00 0.00 32.29 1.40
3327 3561 8.986929 TGATATGATACTCAACTCTCTCTTCA 57.013 34.615 0.00 0.00 0.00 3.02
3328 3562 9.585369 TGATATGATACTCAACTCTCTCTTCAT 57.415 33.333 0.00 0.00 0.00 2.57
3341 3575 8.900983 ACTCTCTCTTCATTTAATTCTATGCC 57.099 34.615 0.00 0.00 0.00 4.40
3342 3576 8.489489 ACTCTCTCTTCATTTAATTCTATGCCA 58.511 33.333 0.00 0.00 0.00 4.92
3343 3577 8.668510 TCTCTCTTCATTTAATTCTATGCCAC 57.331 34.615 0.00 0.00 0.00 5.01
3344 3578 7.716998 TCTCTCTTCATTTAATTCTATGCCACC 59.283 37.037 0.00 0.00 0.00 4.61
3345 3579 7.577303 TCTCTTCATTTAATTCTATGCCACCT 58.423 34.615 0.00 0.00 0.00 4.00
3346 3580 7.716998 TCTCTTCATTTAATTCTATGCCACCTC 59.283 37.037 0.00 0.00 0.00 3.85
3347 3581 7.345691 TCTTCATTTAATTCTATGCCACCTCA 58.654 34.615 0.00 0.00 0.00 3.86
3348 3582 8.000709 TCTTCATTTAATTCTATGCCACCTCAT 58.999 33.333 0.00 0.00 0.00 2.90
3349 3583 7.750229 TCATTTAATTCTATGCCACCTCATC 57.250 36.000 0.00 0.00 0.00 2.92
3350 3584 7.289310 TCATTTAATTCTATGCCACCTCATCA 58.711 34.615 0.00 0.00 0.00 3.07
3351 3585 7.779326 TCATTTAATTCTATGCCACCTCATCAA 59.221 33.333 0.00 0.00 0.00 2.57
3352 3586 7.953005 TTTAATTCTATGCCACCTCATCAAA 57.047 32.000 0.00 0.00 0.00 2.69
3353 3587 8.537728 TTTAATTCTATGCCACCTCATCAAAT 57.462 30.769 0.00 0.00 0.00 2.32
3354 3588 8.537728 TTAATTCTATGCCACCTCATCAAATT 57.462 30.769 0.00 0.00 31.49 1.82
3355 3589 7.427989 AATTCTATGCCACCTCATCAAATTT 57.572 32.000 0.00 0.00 0.00 1.82
3356 3590 5.840243 TCTATGCCACCTCATCAAATTTG 57.160 39.130 12.15 12.15 0.00 2.32
3357 3591 2.747396 TGCCACCTCATCAAATTTGC 57.253 45.000 13.54 0.00 0.00 3.68
3358 3592 1.275856 TGCCACCTCATCAAATTTGCC 59.724 47.619 13.54 0.00 0.00 4.52
3359 3593 1.551883 GCCACCTCATCAAATTTGCCT 59.448 47.619 13.54 0.38 0.00 4.75
3360 3594 2.760092 GCCACCTCATCAAATTTGCCTA 59.240 45.455 13.54 0.00 0.00 3.93
3361 3595 3.181483 GCCACCTCATCAAATTTGCCTAG 60.181 47.826 13.54 9.36 0.00 3.02
3362 3596 4.019174 CCACCTCATCAAATTTGCCTAGT 58.981 43.478 13.54 4.39 0.00 2.57
3363 3597 4.463891 CCACCTCATCAAATTTGCCTAGTT 59.536 41.667 13.54 0.00 0.00 2.24
3364 3598 5.404946 CACCTCATCAAATTTGCCTAGTTG 58.595 41.667 13.54 5.24 0.00 3.16
3365 3599 4.463891 ACCTCATCAAATTTGCCTAGTTGG 59.536 41.667 13.54 10.47 39.35 3.77
3378 3612 3.748083 CCTAGTTGGCATGCATGATACT 58.252 45.455 30.64 26.11 0.00 2.12
3379 3613 4.898320 CCTAGTTGGCATGCATGATACTA 58.102 43.478 30.64 25.87 0.00 1.82
3380 3614 4.692625 CCTAGTTGGCATGCATGATACTAC 59.307 45.833 30.64 22.16 0.00 2.73
3381 3615 3.480470 AGTTGGCATGCATGATACTACC 58.520 45.455 30.64 19.65 0.00 3.18
3382 3616 3.137176 AGTTGGCATGCATGATACTACCT 59.863 43.478 30.64 11.98 0.00 3.08
3383 3617 4.347876 AGTTGGCATGCATGATACTACCTA 59.652 41.667 30.64 13.97 0.00 3.08
3384 3618 5.013495 AGTTGGCATGCATGATACTACCTAT 59.987 40.000 30.64 7.77 0.00 2.57
3385 3619 4.835678 TGGCATGCATGATACTACCTATG 58.164 43.478 30.64 0.23 0.00 2.23
3386 3620 4.531732 TGGCATGCATGATACTACCTATGA 59.468 41.667 30.64 1.93 0.00 2.15
3387 3621 5.190330 TGGCATGCATGATACTACCTATGAT 59.810 40.000 30.64 0.00 0.00 2.45
3388 3622 6.383726 TGGCATGCATGATACTACCTATGATA 59.616 38.462 30.64 0.87 0.00 2.15
3389 3623 6.703607 GGCATGCATGATACTACCTATGATAC 59.296 42.308 30.64 5.71 0.00 2.24
3390 3624 7.418368 GGCATGCATGATACTACCTATGATACT 60.418 40.741 30.64 0.00 0.00 2.12
3391 3625 8.633561 GCATGCATGATACTACCTATGATACTA 58.366 37.037 30.64 0.00 0.00 1.82
3392 3626 9.958234 CATGCATGATACTACCTATGATACTAC 57.042 37.037 22.59 0.00 0.00 2.73
3393 3627 8.521170 TGCATGATACTACCTATGATACTACC 57.479 38.462 0.00 0.00 0.00 3.18
3394 3628 8.113462 TGCATGATACTACCTATGATACTACCA 58.887 37.037 0.00 0.00 0.00 3.25
3395 3629 9.137459 GCATGATACTACCTATGATACTACCAT 57.863 37.037 0.00 0.00 0.00 3.55
3401 3635 8.558973 ACTACCTATGATACTACCATTACGAC 57.441 38.462 0.00 0.00 0.00 4.34
3402 3636 6.830873 ACCTATGATACTACCATTACGACC 57.169 41.667 0.00 0.00 0.00 4.79
3403 3637 6.309357 ACCTATGATACTACCATTACGACCA 58.691 40.000 0.00 0.00 0.00 4.02
3404 3638 6.433404 ACCTATGATACTACCATTACGACCAG 59.567 42.308 0.00 0.00 0.00 4.00
3405 3639 4.579454 TGATACTACCATTACGACCAGC 57.421 45.455 0.00 0.00 0.00 4.85
3406 3640 3.319972 TGATACTACCATTACGACCAGCC 59.680 47.826 0.00 0.00 0.00 4.85
3407 3641 1.861982 ACTACCATTACGACCAGCCT 58.138 50.000 0.00 0.00 0.00 4.58
3408 3642 3.022557 ACTACCATTACGACCAGCCTA 57.977 47.619 0.00 0.00 0.00 3.93
3412 3646 2.835764 ACCATTACGACCAGCCTAAAGA 59.164 45.455 0.00 0.00 0.00 2.52
3422 3656 2.755103 CCAGCCTAAAGAATCAACACCC 59.245 50.000 0.00 0.00 0.00 4.61
3423 3657 3.420893 CAGCCTAAAGAATCAACACCCA 58.579 45.455 0.00 0.00 0.00 4.51
3424 3658 3.441572 CAGCCTAAAGAATCAACACCCAG 59.558 47.826 0.00 0.00 0.00 4.45
3448 3686 6.895756 AGGGATAGTGTTTACATCTACTGTCA 59.104 38.462 0.00 0.00 39.39 3.58
3511 3752 5.614324 AGCCACATTAGTCAACTAGCATA 57.386 39.130 0.00 0.00 0.00 3.14
3603 3844 1.957177 TCCCAGATGCTATCACTCGTC 59.043 52.381 0.00 0.00 0.00 4.20
3604 3845 1.683385 CCCAGATGCTATCACTCGTCA 59.317 52.381 0.00 0.00 0.00 4.35
3654 3895 4.728608 CGACGCAAGCCATTTTCTTATTAC 59.271 41.667 0.00 0.00 45.62 1.89
3655 3896 4.658071 ACGCAAGCCATTTTCTTATTACG 58.342 39.130 0.00 0.00 45.62 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.047560 GTCCGTGCCTACACCCAC 60.048 66.667 0.00 0.00 44.40 4.61
12 13 2.203728 AGTCCGTGCCTACACCCA 60.204 61.111 0.00 0.00 44.40 4.51
13 14 2.264794 CAGTCCGTGCCTACACCC 59.735 66.667 0.00 0.00 44.40 4.61
24 25 4.767255 GTCCCTGCCAGCAGTCCG 62.767 72.222 17.86 5.72 42.15 4.79
25 26 3.640407 TGTCCCTGCCAGCAGTCC 61.640 66.667 17.86 6.25 42.15 3.85
26 27 2.359230 GTGTCCCTGCCAGCAGTC 60.359 66.667 17.86 8.84 42.15 3.51
27 28 4.320456 CGTGTCCCTGCCAGCAGT 62.320 66.667 17.86 0.00 42.15 4.40
30 31 3.842925 TTTCCGTGTCCCTGCCAGC 62.843 63.158 0.00 0.00 0.00 4.85
31 32 1.966451 GTTTCCGTGTCCCTGCCAG 60.966 63.158 0.00 0.00 0.00 4.85
32 33 2.112297 GTTTCCGTGTCCCTGCCA 59.888 61.111 0.00 0.00 0.00 4.92
33 34 1.966451 CAGTTTCCGTGTCCCTGCC 60.966 63.158 0.00 0.00 0.00 4.85
34 35 1.966451 CCAGTTTCCGTGTCCCTGC 60.966 63.158 0.00 0.00 0.00 4.85
35 36 1.302511 CCCAGTTTCCGTGTCCCTG 60.303 63.158 0.00 0.00 0.00 4.45
36 37 1.768888 ACCCAGTTTCCGTGTCCCT 60.769 57.895 0.00 0.00 0.00 4.20
37 38 1.599797 CACCCAGTTTCCGTGTCCC 60.600 63.158 0.00 0.00 0.00 4.46
38 39 1.599797 CCACCCAGTTTCCGTGTCC 60.600 63.158 0.00 0.00 0.00 4.02
39 40 2.258726 GCCACCCAGTTTCCGTGTC 61.259 63.158 0.00 0.00 0.00 3.67
40 41 2.203294 GCCACCCAGTTTCCGTGT 60.203 61.111 0.00 0.00 0.00 4.49
41 42 3.353836 CGCCACCCAGTTTCCGTG 61.354 66.667 0.00 0.00 0.00 4.94
42 43 4.636435 CCGCCACCCAGTTTCCGT 62.636 66.667 0.00 0.00 0.00 4.69
79 80 2.629050 TATCGACAGCAAGCCCTCGC 62.629 60.000 0.00 0.00 0.00 5.03
80 81 0.596083 CTATCGACAGCAAGCCCTCG 60.596 60.000 0.00 3.34 0.00 4.63
81 82 0.249657 CCTATCGACAGCAAGCCCTC 60.250 60.000 0.00 0.00 0.00 4.30
82 83 1.690219 CCCTATCGACAGCAAGCCCT 61.690 60.000 0.00 0.00 0.00 5.19
83 84 1.227674 CCCTATCGACAGCAAGCCC 60.228 63.158 0.00 0.00 0.00 5.19
84 85 1.227674 CCCCTATCGACAGCAAGCC 60.228 63.158 0.00 0.00 0.00 4.35
85 86 0.811616 CACCCCTATCGACAGCAAGC 60.812 60.000 0.00 0.00 0.00 4.01
86 87 0.179073 CCACCCCTATCGACAGCAAG 60.179 60.000 0.00 0.00 0.00 4.01
87 88 0.616395 TCCACCCCTATCGACAGCAA 60.616 55.000 0.00 0.00 0.00 3.91
88 89 0.616395 TTCCACCCCTATCGACAGCA 60.616 55.000 0.00 0.00 0.00 4.41
89 90 0.105039 CTTCCACCCCTATCGACAGC 59.895 60.000 0.00 0.00 0.00 4.40
90 91 1.683917 CTCTTCCACCCCTATCGACAG 59.316 57.143 0.00 0.00 0.00 3.51
91 92 1.286849 TCTCTTCCACCCCTATCGACA 59.713 52.381 0.00 0.00 0.00 4.35
92 93 2.068834 TCTCTTCCACCCCTATCGAC 57.931 55.000 0.00 0.00 0.00 4.20
93 94 2.840640 TTCTCTTCCACCCCTATCGA 57.159 50.000 0.00 0.00 0.00 3.59
94 95 2.037772 CCATTCTCTTCCACCCCTATCG 59.962 54.545 0.00 0.00 0.00 2.92
95 96 2.224646 GCCATTCTCTTCCACCCCTATC 60.225 54.545 0.00 0.00 0.00 2.08
96 97 1.777272 GCCATTCTCTTCCACCCCTAT 59.223 52.381 0.00 0.00 0.00 2.57
97 98 1.213296 GCCATTCTCTTCCACCCCTA 58.787 55.000 0.00 0.00 0.00 3.53
98 99 1.575447 GGCCATTCTCTTCCACCCCT 61.575 60.000 0.00 0.00 0.00 4.79
99 100 1.076705 GGCCATTCTCTTCCACCCC 60.077 63.158 0.00 0.00 0.00 4.95
100 101 0.039618 TTGGCCATTCTCTTCCACCC 59.960 55.000 6.09 0.00 0.00 4.61
101 102 1.753073 CATTGGCCATTCTCTTCCACC 59.247 52.381 6.09 0.00 0.00 4.61
102 103 2.165030 CACATTGGCCATTCTCTTCCAC 59.835 50.000 6.09 0.00 0.00 4.02
103 104 2.449464 CACATTGGCCATTCTCTTCCA 58.551 47.619 6.09 0.00 0.00 3.53
104 105 1.753073 CCACATTGGCCATTCTCTTCC 59.247 52.381 6.09 0.00 0.00 3.46
116 117 2.472059 CCCGTCGATGCCACATTGG 61.472 63.158 0.00 0.00 41.55 3.16
117 118 1.745115 ACCCGTCGATGCCACATTG 60.745 57.895 0.00 0.00 0.00 2.82
118 119 1.745115 CACCCGTCGATGCCACATT 60.745 57.895 0.00 0.00 0.00 2.71
119 120 2.125147 CACCCGTCGATGCCACAT 60.125 61.111 0.00 0.00 0.00 3.21
120 121 4.386951 CCACCCGTCGATGCCACA 62.387 66.667 0.00 0.00 0.00 4.17
123 124 4.832608 GACCCACCCGTCGATGCC 62.833 72.222 0.00 0.00 0.00 4.40
124 125 3.599285 TTGACCCACCCGTCGATGC 62.599 63.158 0.00 0.00 35.40 3.91
125 126 1.447838 CTTGACCCACCCGTCGATG 60.448 63.158 0.00 0.00 35.40 3.84
126 127 1.911766 ACTTGACCCACCCGTCGAT 60.912 57.895 0.00 0.00 35.40 3.59
127 128 2.522436 ACTTGACCCACCCGTCGA 60.522 61.111 0.00 0.00 35.40 4.20
128 129 2.357034 CACTTGACCCACCCGTCG 60.357 66.667 0.00 0.00 35.40 5.12
129 130 2.032071 CCACTTGACCCACCCGTC 59.968 66.667 0.00 0.00 0.00 4.79
130 131 2.446994 TCCACTTGACCCACCCGT 60.447 61.111 0.00 0.00 0.00 5.28
131 132 2.347490 CTCCACTTGACCCACCCG 59.653 66.667 0.00 0.00 0.00 5.28
132 133 1.842381 CTCCTCCACTTGACCCACCC 61.842 65.000 0.00 0.00 0.00 4.61
133 134 1.128188 ACTCCTCCACTTGACCCACC 61.128 60.000 0.00 0.00 0.00 4.61
134 135 1.550976 CTACTCCTCCACTTGACCCAC 59.449 57.143 0.00 0.00 0.00 4.61
135 136 1.552486 CCTACTCCTCCACTTGACCCA 60.552 57.143 0.00 0.00 0.00 4.51
136 137 1.196012 CCTACTCCTCCACTTGACCC 58.804 60.000 0.00 0.00 0.00 4.46
137 138 0.537653 GCCTACTCCTCCACTTGACC 59.462 60.000 0.00 0.00 0.00 4.02
138 139 0.173708 CGCCTACTCCTCCACTTGAC 59.826 60.000 0.00 0.00 0.00 3.18
139 140 1.605058 GCGCCTACTCCTCCACTTGA 61.605 60.000 0.00 0.00 0.00 3.02
140 141 1.153549 GCGCCTACTCCTCCACTTG 60.154 63.158 0.00 0.00 0.00 3.16
141 142 1.609501 TGCGCCTACTCCTCCACTT 60.610 57.895 4.18 0.00 0.00 3.16
142 143 2.037367 TGCGCCTACTCCTCCACT 59.963 61.111 4.18 0.00 0.00 4.00
143 144 2.184579 GTGCGCCTACTCCTCCAC 59.815 66.667 4.18 0.00 0.00 4.02
144 145 3.449227 CGTGCGCCTACTCCTCCA 61.449 66.667 4.18 0.00 0.00 3.86
145 146 3.412879 GACGTGCGCCTACTCCTCC 62.413 68.421 4.18 0.00 0.00 4.30
146 147 2.102553 GACGTGCGCCTACTCCTC 59.897 66.667 4.18 0.00 0.00 3.71
147 148 3.450115 GGACGTGCGCCTACTCCT 61.450 66.667 4.18 0.00 0.00 3.69
148 149 4.849329 CGGACGTGCGCCTACTCC 62.849 72.222 18.46 5.70 0.00 3.85
149 150 3.621892 AACGGACGTGCGCCTACTC 62.622 63.158 29.80 0.00 0.00 2.59
150 151 3.677648 AACGGACGTGCGCCTACT 61.678 61.111 29.80 6.53 0.00 2.57
151 152 3.475774 CAACGGACGTGCGCCTAC 61.476 66.667 29.80 0.00 0.00 3.18
161 162 3.698463 CACGGACACGCAACGGAC 61.698 66.667 0.00 0.00 46.04 4.79
162 163 4.210093 ACACGGACACGCAACGGA 62.210 61.111 0.00 0.00 46.04 4.69
163 164 3.698463 GACACGGACACGCAACGG 61.698 66.667 0.00 0.00 46.04 4.44
164 165 4.042060 CGACACGGACACGCAACG 62.042 66.667 0.00 0.00 46.04 4.10
165 166 2.656007 TCGACACGGACACGCAAC 60.656 61.111 0.00 0.00 46.04 4.17
166 167 2.656007 GTCGACACGGACACGCAA 60.656 61.111 11.55 0.00 46.04 4.85
167 168 4.967730 CGTCGACACGGACACGCA 62.968 66.667 17.16 0.00 46.04 5.24
169 170 4.967730 TGCGTCGACACGGACACG 62.968 66.667 17.16 0.00 46.80 4.49
173 174 1.006825 CTGATTTGCGTCGACACGGA 61.007 55.000 17.16 0.77 46.80 4.69
174 175 1.006825 TCTGATTTGCGTCGACACGG 61.007 55.000 17.16 0.00 46.80 4.94
176 177 1.387084 GAGTCTGATTTGCGTCGACAC 59.613 52.381 17.16 6.48 0.00 3.67
177 178 1.000717 TGAGTCTGATTTGCGTCGACA 60.001 47.619 17.16 0.00 0.00 4.35
178 179 1.698165 TGAGTCTGATTTGCGTCGAC 58.302 50.000 5.18 5.18 0.00 4.20
179 180 2.432206 TTGAGTCTGATTTGCGTCGA 57.568 45.000 0.00 0.00 0.00 4.20
180 181 3.519908 TTTTGAGTCTGATTTGCGTCG 57.480 42.857 0.00 0.00 0.00 5.12
181 182 5.451908 TCAATTTTGAGTCTGATTTGCGTC 58.548 37.500 0.00 0.00 32.50 5.19
182 183 5.437289 TCAATTTTGAGTCTGATTTGCGT 57.563 34.783 0.00 0.00 32.50 5.24
195 196 4.148838 ACCCATTTCCGACTCAATTTTGA 58.851 39.130 0.00 0.00 35.57 2.69
196 197 4.519540 ACCCATTTCCGACTCAATTTTG 57.480 40.909 0.00 0.00 0.00 2.44
197 198 4.262420 CCAACCCATTTCCGACTCAATTTT 60.262 41.667 0.00 0.00 0.00 1.82
198 199 3.258123 CCAACCCATTTCCGACTCAATTT 59.742 43.478 0.00 0.00 0.00 1.82
199 200 2.825532 CCAACCCATTTCCGACTCAATT 59.174 45.455 0.00 0.00 0.00 2.32
200 201 2.446435 CCAACCCATTTCCGACTCAAT 58.554 47.619 0.00 0.00 0.00 2.57
201 202 1.904287 CCAACCCATTTCCGACTCAA 58.096 50.000 0.00 0.00 0.00 3.02
202 203 0.608035 GCCAACCCATTTCCGACTCA 60.608 55.000 0.00 0.00 0.00 3.41
203 204 1.644786 CGCCAACCCATTTCCGACTC 61.645 60.000 0.00 0.00 0.00 3.36
204 205 1.674322 CGCCAACCCATTTCCGACT 60.674 57.895 0.00 0.00 0.00 4.18
205 206 2.696759 CCGCCAACCCATTTCCGAC 61.697 63.158 0.00 0.00 0.00 4.79
206 207 2.360600 CCGCCAACCCATTTCCGA 60.361 61.111 0.00 0.00 0.00 4.55
207 208 3.448340 CCCGCCAACCCATTTCCG 61.448 66.667 0.00 0.00 0.00 4.30
208 209 2.283604 ACCCGCCAACCCATTTCC 60.284 61.111 0.00 0.00 0.00 3.13
209 210 2.645192 CCACCCGCCAACCCATTTC 61.645 63.158 0.00 0.00 0.00 2.17
210 211 2.603171 CCACCCGCCAACCCATTT 60.603 61.111 0.00 0.00 0.00 2.32
211 212 3.585428 TCCACCCGCCAACCCATT 61.585 61.111 0.00 0.00 0.00 3.16
212 213 4.360405 GTCCACCCGCCAACCCAT 62.360 66.667 0.00 0.00 0.00 4.00
215 216 4.629523 TTCGTCCACCCGCCAACC 62.630 66.667 0.00 0.00 0.00 3.77
216 217 1.726533 TTTTTCGTCCACCCGCCAAC 61.727 55.000 0.00 0.00 0.00 3.77
217 218 1.453379 TTTTTCGTCCACCCGCCAA 60.453 52.632 0.00 0.00 0.00 4.52
218 219 2.188161 GTTTTTCGTCCACCCGCCA 61.188 57.895 0.00 0.00 0.00 5.69
219 220 2.640989 GTTTTTCGTCCACCCGCC 59.359 61.111 0.00 0.00 0.00 6.13
220 221 1.774046 TTCGTTTTTCGTCCACCCGC 61.774 55.000 0.00 0.00 40.80 6.13
221 222 0.041926 GTTCGTTTTTCGTCCACCCG 60.042 55.000 0.00 0.00 40.80 5.28
222 223 1.015868 TGTTCGTTTTTCGTCCACCC 58.984 50.000 0.00 0.00 40.80 4.61
223 224 1.592830 CGTGTTCGTTTTTCGTCCACC 60.593 52.381 0.00 0.00 40.80 4.61
224 225 1.721991 CGTGTTCGTTTTTCGTCCAC 58.278 50.000 0.00 0.00 40.80 4.02
238 239 1.322338 CGACTCAAACGAACACGTGTT 59.678 47.619 32.77 32.77 40.20 3.32
239 240 0.918619 CGACTCAAACGAACACGTGT 59.081 50.000 17.22 17.22 40.20 4.49
240 241 1.193644 TCGACTCAAACGAACACGTG 58.806 50.000 15.48 15.48 40.20 4.49
241 242 1.784856 CATCGACTCAAACGAACACGT 59.215 47.619 0.00 0.00 42.80 4.49
242 243 1.460267 GCATCGACTCAAACGAACACG 60.460 52.381 0.00 0.00 42.80 4.49
243 244 1.460267 CGCATCGACTCAAACGAACAC 60.460 52.381 0.00 0.00 42.80 3.32
244 245 0.781787 CGCATCGACTCAAACGAACA 59.218 50.000 0.00 0.00 42.80 3.18
245 246 0.782384 ACGCATCGACTCAAACGAAC 59.218 50.000 0.00 0.00 42.80 3.95
246 247 1.191425 CAACGCATCGACTCAAACGAA 59.809 47.619 0.00 0.00 42.80 3.85
247 248 0.781787 CAACGCATCGACTCAAACGA 59.218 50.000 0.00 0.00 43.65 3.85
248 249 0.179250 CCAACGCATCGACTCAAACG 60.179 55.000 0.00 0.00 0.00 3.60
249 250 1.136336 GTCCAACGCATCGACTCAAAC 60.136 52.381 0.00 0.00 0.00 2.93
250 251 1.144969 GTCCAACGCATCGACTCAAA 58.855 50.000 0.00 0.00 0.00 2.69
251 252 0.669318 GGTCCAACGCATCGACTCAA 60.669 55.000 0.00 0.00 0.00 3.02
252 253 1.080093 GGTCCAACGCATCGACTCA 60.080 57.895 0.00 0.00 0.00 3.41
253 254 2.158959 CGGTCCAACGCATCGACTC 61.159 63.158 0.00 0.00 0.00 3.36
254 255 1.945354 ATCGGTCCAACGCATCGACT 61.945 55.000 0.00 0.00 32.60 4.18
255 256 1.082117 AATCGGTCCAACGCATCGAC 61.082 55.000 0.00 0.00 32.60 4.20
256 257 0.390603 AAATCGGTCCAACGCATCGA 60.391 50.000 0.00 0.00 0.00 3.59
257 258 0.446222 AAAATCGGTCCAACGCATCG 59.554 50.000 0.00 0.00 0.00 3.84
258 259 2.161609 AGAAAAATCGGTCCAACGCATC 59.838 45.455 0.00 0.00 0.00 3.91
259 260 2.159382 AGAAAAATCGGTCCAACGCAT 58.841 42.857 0.00 0.00 0.00 4.73
260 261 1.600023 AGAAAAATCGGTCCAACGCA 58.400 45.000 0.00 0.00 0.00 5.24
261 262 4.340263 GAATAGAAAAATCGGTCCAACGC 58.660 43.478 0.00 0.00 0.00 4.84
262 263 4.493545 CGGAATAGAAAAATCGGTCCAACG 60.494 45.833 0.00 0.00 0.00 4.10
263 264 4.632688 TCGGAATAGAAAAATCGGTCCAAC 59.367 41.667 0.00 0.00 0.00 3.77
264 265 4.632688 GTCGGAATAGAAAAATCGGTCCAA 59.367 41.667 0.00 0.00 0.00 3.53
265 266 4.186159 GTCGGAATAGAAAAATCGGTCCA 58.814 43.478 0.00 0.00 0.00 4.02
266 267 3.244579 CGTCGGAATAGAAAAATCGGTCC 59.755 47.826 0.00 0.00 0.00 4.46
267 268 4.027050 GTCGTCGGAATAGAAAAATCGGTC 60.027 45.833 0.00 0.00 0.00 4.79
268 269 3.861689 GTCGTCGGAATAGAAAAATCGGT 59.138 43.478 0.00 0.00 0.00 4.69
269 270 3.244579 GGTCGTCGGAATAGAAAAATCGG 59.755 47.826 0.00 0.00 0.00 4.18
270 271 4.110482 AGGTCGTCGGAATAGAAAAATCG 58.890 43.478 0.00 0.00 0.00 3.34
271 272 7.529880 TTTAGGTCGTCGGAATAGAAAAATC 57.470 36.000 0.00 0.00 0.00 2.17
272 273 9.257651 CTATTTAGGTCGTCGGAATAGAAAAAT 57.742 33.333 0.00 0.00 34.01 1.82
273 274 8.469200 TCTATTTAGGTCGTCGGAATAGAAAAA 58.531 33.333 0.00 0.00 36.75 1.94
274 275 7.999679 TCTATTTAGGTCGTCGGAATAGAAAA 58.000 34.615 0.00 0.00 36.75 2.29
275 276 7.572523 TCTATTTAGGTCGTCGGAATAGAAA 57.427 36.000 0.00 0.00 36.75 2.52
276 277 7.756395 ATCTATTTAGGTCGTCGGAATAGAA 57.244 36.000 7.84 0.00 40.59 2.10
277 278 7.063898 CGTATCTATTTAGGTCGTCGGAATAGA 59.936 40.741 6.58 6.58 41.12 1.98
278 279 7.148507 ACGTATCTATTTAGGTCGTCGGAATAG 60.149 40.741 0.00 0.00 33.64 1.73
279 280 6.650807 ACGTATCTATTTAGGTCGTCGGAATA 59.349 38.462 0.00 0.00 0.00 1.75
280 281 5.471456 ACGTATCTATTTAGGTCGTCGGAAT 59.529 40.000 0.00 0.00 0.00 3.01
281 282 4.816385 ACGTATCTATTTAGGTCGTCGGAA 59.184 41.667 0.00 0.00 0.00 4.30
282 283 4.212004 CACGTATCTATTTAGGTCGTCGGA 59.788 45.833 0.00 0.00 0.00 4.55
283 284 4.461405 CACGTATCTATTTAGGTCGTCGG 58.539 47.826 0.00 0.00 0.00 4.79
284 285 3.904824 GCACGTATCTATTTAGGTCGTCG 59.095 47.826 0.00 0.00 0.00 5.12
285 286 3.904824 CGCACGTATCTATTTAGGTCGTC 59.095 47.826 0.00 0.00 0.00 4.20
286 287 3.304257 CCGCACGTATCTATTTAGGTCGT 60.304 47.826 0.00 0.00 0.00 4.34
287 288 3.058708 TCCGCACGTATCTATTTAGGTCG 60.059 47.826 0.00 0.00 0.00 4.79
288 289 4.225208 GTCCGCACGTATCTATTTAGGTC 58.775 47.826 0.00 0.00 0.00 3.85
289 290 3.304257 CGTCCGCACGTATCTATTTAGGT 60.304 47.826 0.00 0.00 41.42 3.08
290 291 3.058708 TCGTCCGCACGTATCTATTTAGG 60.059 47.826 0.00 0.00 46.76 2.69
291 292 4.137849 TCGTCCGCACGTATCTATTTAG 57.862 45.455 0.00 0.00 46.76 1.85
292 293 4.550577 TTCGTCCGCACGTATCTATTTA 57.449 40.909 0.00 0.00 46.76 1.40
293 294 3.425577 TTCGTCCGCACGTATCTATTT 57.574 42.857 0.00 0.00 46.76 1.40
294 295 3.425577 TTTCGTCCGCACGTATCTATT 57.574 42.857 0.00 0.00 46.76 1.73
295 296 3.004002 TCATTTCGTCCGCACGTATCTAT 59.996 43.478 0.00 0.00 46.76 1.98
296 297 2.355444 TCATTTCGTCCGCACGTATCTA 59.645 45.455 0.00 0.00 46.76 1.98
297 298 1.133598 TCATTTCGTCCGCACGTATCT 59.866 47.619 0.00 0.00 46.76 1.98
298 299 1.552226 TCATTTCGTCCGCACGTATC 58.448 50.000 0.00 0.00 46.76 2.24
299 300 1.999048 TTCATTTCGTCCGCACGTAT 58.001 45.000 0.00 0.00 46.76 3.06
300 301 1.921887 GATTCATTTCGTCCGCACGTA 59.078 47.619 0.00 0.00 46.76 3.57
301 302 0.719465 GATTCATTTCGTCCGCACGT 59.281 50.000 0.00 0.00 46.76 4.49
303 304 1.062587 CCTGATTCATTTCGTCCGCAC 59.937 52.381 0.00 0.00 0.00 5.34
304 305 1.368641 CCTGATTCATTTCGTCCGCA 58.631 50.000 0.00 0.00 0.00 5.69
305 306 0.657840 CCCTGATTCATTTCGTCCGC 59.342 55.000 0.00 0.00 0.00 5.54
306 307 0.657840 GCCCTGATTCATTTCGTCCG 59.342 55.000 0.00 0.00 0.00 4.79
307 308 0.657840 CGCCCTGATTCATTTCGTCC 59.342 55.000 0.00 0.00 0.00 4.79
308 309 1.651987 TCGCCCTGATTCATTTCGTC 58.348 50.000 0.00 0.00 0.00 4.20
309 310 2.107950 TTCGCCCTGATTCATTTCGT 57.892 45.000 0.00 0.00 0.00 3.85
310 311 6.480524 TTATATTCGCCCTGATTCATTTCG 57.519 37.500 0.00 0.00 0.00 3.46
311 312 6.797033 CGTTTATATTCGCCCTGATTCATTTC 59.203 38.462 0.00 0.00 0.00 2.17
312 313 6.293955 CCGTTTATATTCGCCCTGATTCATTT 60.294 38.462 0.00 0.00 0.00 2.32
313 314 5.181245 CCGTTTATATTCGCCCTGATTCATT 59.819 40.000 0.00 0.00 0.00 2.57
314 315 4.695455 CCGTTTATATTCGCCCTGATTCAT 59.305 41.667 0.00 0.00 0.00 2.57
315 316 4.062293 CCGTTTATATTCGCCCTGATTCA 58.938 43.478 0.00 0.00 0.00 2.57
316 317 4.312443 TCCGTTTATATTCGCCCTGATTC 58.688 43.478 0.00 0.00 0.00 2.52
317 318 4.345859 TCCGTTTATATTCGCCCTGATT 57.654 40.909 0.00 0.00 0.00 2.57
318 319 4.062991 GTTCCGTTTATATTCGCCCTGAT 58.937 43.478 0.00 0.00 0.00 2.90
319 320 3.118702 TGTTCCGTTTATATTCGCCCTGA 60.119 43.478 0.00 0.00 0.00 3.86
320 321 3.199677 TGTTCCGTTTATATTCGCCCTG 58.800 45.455 0.00 0.00 0.00 4.45
321 322 3.547054 TGTTCCGTTTATATTCGCCCT 57.453 42.857 0.00 0.00 0.00 5.19
322 323 4.619437 TTTGTTCCGTTTATATTCGCCC 57.381 40.909 0.00 0.00 0.00 6.13
323 324 5.051973 GCATTTTGTTCCGTTTATATTCGCC 60.052 40.000 0.00 0.00 0.00 5.54
324 325 5.741982 AGCATTTTGTTCCGTTTATATTCGC 59.258 36.000 0.00 0.00 0.00 4.70
325 326 8.730427 GTTAGCATTTTGTTCCGTTTATATTCG 58.270 33.333 0.00 0.00 0.00 3.34
326 327 8.730427 CGTTAGCATTTTGTTCCGTTTATATTC 58.270 33.333 0.00 0.00 0.00 1.75
327 328 8.452534 TCGTTAGCATTTTGTTCCGTTTATATT 58.547 29.630 0.00 0.00 0.00 1.28
328 329 7.976826 TCGTTAGCATTTTGTTCCGTTTATAT 58.023 30.769 0.00 0.00 0.00 0.86
329 330 7.361889 TCGTTAGCATTTTGTTCCGTTTATA 57.638 32.000 0.00 0.00 0.00 0.98
330 331 6.243811 TCGTTAGCATTTTGTTCCGTTTAT 57.756 33.333 0.00 0.00 0.00 1.40
331 332 5.670149 TCGTTAGCATTTTGTTCCGTTTA 57.330 34.783 0.00 0.00 0.00 2.01
332 333 4.555348 TCGTTAGCATTTTGTTCCGTTT 57.445 36.364 0.00 0.00 0.00 3.60
333 334 4.533222 CTTCGTTAGCATTTTGTTCCGTT 58.467 39.130 0.00 0.00 0.00 4.44
334 335 4.141855 CTTCGTTAGCATTTTGTTCCGT 57.858 40.909 0.00 0.00 0.00 4.69
379 380 2.359230 GGTGCACCTCAGCCTCAC 60.359 66.667 29.12 0.00 37.22 3.51
381 382 4.767255 CCGGTGCACCTCAGCCTC 62.767 72.222 32.28 4.83 39.94 4.70
582 704 3.063180 ACGTACTGCTACTTGTAGCTACG 59.937 47.826 30.56 30.56 43.20 3.51
649 771 0.179134 GAGGCGCGGCTATATAGGTG 60.179 60.000 36.42 3.90 0.00 4.00
735 857 2.025155 GACTGTACTGGCTAGCTGCTA 58.975 52.381 15.72 9.34 42.39 3.49
767 894 0.858139 AGAGAGGGAGAGAAGGGGGT 60.858 60.000 0.00 0.00 0.00 4.95
774 901 1.010793 AGAGAGGGAGAGAGGGAGAGA 59.989 57.143 0.00 0.00 0.00 3.10
788 915 1.337703 CGGCAATGAGAGAGAGAGAGG 59.662 57.143 0.00 0.00 0.00 3.69
792 919 1.819229 GGCGGCAATGAGAGAGAGA 59.181 57.895 3.07 0.00 0.00 3.10
853 980 3.299190 CGATCGAGAGGGGAGGGC 61.299 72.222 10.26 0.00 0.00 5.19
877 1004 3.239275 TTCGAGCACGCACGTACGA 62.239 57.895 24.41 12.52 39.58 3.43
878 1005 2.764925 CTTCGAGCACGCACGTACG 61.765 63.158 15.01 15.01 39.58 3.67
886 1013 0.798771 GAGGTGTAGCTTCGAGCACG 60.799 60.000 0.00 0.00 45.56 5.34
892 1019 2.579787 CGCCGAGGTGTAGCTTCG 60.580 66.667 0.00 0.00 44.85 3.79
945 1072 3.438434 TCTGCTTCTCTCCGATATCGATG 59.562 47.826 26.32 17.00 43.02 3.84
951 1078 1.495148 TCCCTCTGCTTCTCTCCGATA 59.505 52.381 0.00 0.00 0.00 2.92
952 1079 0.260230 TCCCTCTGCTTCTCTCCGAT 59.740 55.000 0.00 0.00 0.00 4.18
953 1080 0.395036 CTCCCTCTGCTTCTCTCCGA 60.395 60.000 0.00 0.00 0.00 4.55
1169 1299 3.803082 CCATGCGCTTGTCCCACG 61.803 66.667 20.40 2.00 0.00 4.94
1252 1405 4.301628 CAAACAATGGAAGAAGGAGCAAC 58.698 43.478 0.00 0.00 0.00 4.17
1253 1406 4.589216 CAAACAATGGAAGAAGGAGCAA 57.411 40.909 0.00 0.00 0.00 3.91
1270 1423 7.548967 ACTAGCTAGTAGAAATCACTCCAAAC 58.451 38.462 24.97 0.00 34.13 2.93
1273 1426 7.548097 CAAACTAGCTAGTAGAAATCACTCCA 58.452 38.462 26.29 0.00 34.99 3.86
1275 1428 7.262048 AGCAAACTAGCTAGTAGAAATCACTC 58.738 38.462 26.29 7.31 44.50 3.51
1276 1429 7.093727 TGAGCAAACTAGCTAGTAGAAATCACT 60.094 37.037 26.29 14.38 46.75 3.41
1277 1430 7.009723 GTGAGCAAACTAGCTAGTAGAAATCAC 59.990 40.741 26.29 26.29 46.75 3.06
1278 1431 7.036220 GTGAGCAAACTAGCTAGTAGAAATCA 58.964 38.462 26.29 21.07 46.75 2.57
1280 1433 6.155393 AGGTGAGCAAACTAGCTAGTAGAAAT 59.845 38.462 26.29 11.84 46.75 2.17
1286 1439 2.164624 CGAGGTGAGCAAACTAGCTAGT 59.835 50.000 20.95 20.95 46.75 2.57
1528 1681 2.094659 CCAGCAACGTGGTAGCGAG 61.095 63.158 0.00 0.00 35.59 5.03
1577 1730 6.318900 ACACTCGGTCTTTTCTCATTTTCTTT 59.681 34.615 0.00 0.00 0.00 2.52
1578 1731 5.823045 ACACTCGGTCTTTTCTCATTTTCTT 59.177 36.000 0.00 0.00 0.00 2.52
1579 1732 5.368989 ACACTCGGTCTTTTCTCATTTTCT 58.631 37.500 0.00 0.00 0.00 2.52
1580 1733 5.674933 ACACTCGGTCTTTTCTCATTTTC 57.325 39.130 0.00 0.00 0.00 2.29
1581 1734 5.823045 AGAACACTCGGTCTTTTCTCATTTT 59.177 36.000 0.00 0.00 0.00 1.82
1582 1735 5.368989 AGAACACTCGGTCTTTTCTCATTT 58.631 37.500 0.00 0.00 0.00 2.32
1583 1736 4.962155 AGAACACTCGGTCTTTTCTCATT 58.038 39.130 0.00 0.00 0.00 2.57
1584 1737 4.608948 AGAACACTCGGTCTTTTCTCAT 57.391 40.909 0.00 0.00 0.00 2.90
1585 1738 4.402056 AAGAACACTCGGTCTTTTCTCA 57.598 40.909 0.00 0.00 0.00 3.27
1586 1739 5.177142 GGTTAAGAACACTCGGTCTTTTCTC 59.823 44.000 0.00 0.00 0.00 2.87
1587 1740 5.055144 GGTTAAGAACACTCGGTCTTTTCT 58.945 41.667 0.00 0.00 0.00 2.52
1588 1741 4.084693 CGGTTAAGAACACTCGGTCTTTTC 60.085 45.833 0.00 0.00 0.00 2.29
1589 1742 3.805971 CGGTTAAGAACACTCGGTCTTTT 59.194 43.478 0.00 0.00 0.00 2.27
1590 1743 3.181472 ACGGTTAAGAACACTCGGTCTTT 60.181 43.478 0.00 0.00 0.00 2.52
1591 1744 2.363359 ACGGTTAAGAACACTCGGTCTT 59.637 45.455 0.00 0.00 0.00 3.01
1592 1745 1.959282 ACGGTTAAGAACACTCGGTCT 59.041 47.619 0.00 0.00 0.00 3.85
1593 1746 2.428888 ACGGTTAAGAACACTCGGTC 57.571 50.000 0.00 0.00 0.00 4.79
1594 1747 2.476821 CAACGGTTAAGAACACTCGGT 58.523 47.619 0.00 0.00 0.00 4.69
1595 1748 1.796459 CCAACGGTTAAGAACACTCGG 59.204 52.381 0.00 0.00 0.00 4.63
1596 1749 1.193874 GCCAACGGTTAAGAACACTCG 59.806 52.381 0.00 0.00 0.00 4.18
1597 1750 2.490991 AGCCAACGGTTAAGAACACTC 58.509 47.619 0.00 0.00 0.00 3.51
1598 1751 2.616842 CAAGCCAACGGTTAAGAACACT 59.383 45.455 0.00 0.00 0.00 3.55
1599 1752 2.287368 CCAAGCCAACGGTTAAGAACAC 60.287 50.000 0.00 0.00 0.00 3.32
1600 1753 1.950909 CCAAGCCAACGGTTAAGAACA 59.049 47.619 0.00 0.00 0.00 3.18
1601 1754 1.335597 GCCAAGCCAACGGTTAAGAAC 60.336 52.381 0.00 0.00 0.00 3.01
1602 1755 0.955905 GCCAAGCCAACGGTTAAGAA 59.044 50.000 0.00 0.00 0.00 2.52
1740 1917 1.736645 CCATCCACGACACCGACAC 60.737 63.158 0.00 0.00 39.50 3.67
1802 1979 1.243342 CCTTCTTGGCGAACATGGCA 61.243 55.000 0.00 0.00 43.36 4.92
1835 2012 1.227764 CATGAGGGTGGCCATCTCG 60.228 63.158 24.61 13.61 35.13 4.04
1859 2036 2.243736 AGAGAGAGAGGGAGGTCGAAAT 59.756 50.000 0.00 0.00 0.00 2.17
1860 2037 1.636519 AGAGAGAGAGGGAGGTCGAAA 59.363 52.381 0.00 0.00 0.00 3.46
1861 2038 1.291109 AGAGAGAGAGGGAGGTCGAA 58.709 55.000 0.00 0.00 0.00 3.71
1868 2045 1.752436 GCCGATGAAGAGAGAGAGGGA 60.752 57.143 0.00 0.00 0.00 4.20
1903 2083 8.817876 CCCAAGATAGTTTTTATTTTTGGGGTA 58.182 33.333 10.39 0.00 46.16 3.69
1904 2084 7.685481 CCCAAGATAGTTTTTATTTTTGGGGT 58.315 34.615 10.39 0.00 46.16 4.95
1928 2108 2.039348 TGCTAGTGGTGAAGGGTAAACC 59.961 50.000 0.00 0.00 40.67 3.27
1929 2109 3.244457 ACTGCTAGTGGTGAAGGGTAAAC 60.244 47.826 0.00 0.00 0.00 2.01
1930 2110 2.976882 ACTGCTAGTGGTGAAGGGTAAA 59.023 45.455 0.00 0.00 0.00 2.01
1931 2111 2.565834 GACTGCTAGTGGTGAAGGGTAA 59.434 50.000 0.00 0.00 0.00 2.85
1932 2112 2.176889 GACTGCTAGTGGTGAAGGGTA 58.823 52.381 0.00 0.00 0.00 3.69
1933 2113 0.977395 GACTGCTAGTGGTGAAGGGT 59.023 55.000 0.00 0.00 0.00 4.34
1934 2114 0.250513 GGACTGCTAGTGGTGAAGGG 59.749 60.000 0.00 0.00 0.00 3.95
1935 2115 1.270907 AGGACTGCTAGTGGTGAAGG 58.729 55.000 0.00 0.00 0.00 3.46
1936 2116 3.070018 CAAAGGACTGCTAGTGGTGAAG 58.930 50.000 0.00 0.00 0.00 3.02
1937 2117 2.703536 TCAAAGGACTGCTAGTGGTGAA 59.296 45.455 0.00 0.00 0.00 3.18
1938 2118 2.037251 GTCAAAGGACTGCTAGTGGTGA 59.963 50.000 0.00 0.00 40.99 4.02
1939 2119 2.417719 GTCAAAGGACTGCTAGTGGTG 58.582 52.381 0.00 0.00 40.99 4.17
1964 2144 2.538449 CACATGGAATACGCCGTTCTAC 59.462 50.000 0.00 0.00 0.00 2.59
1989 2172 6.044046 GGTATACGTGACATTCCATGTGTTA 58.956 40.000 0.00 0.00 45.03 2.41
2064 2251 3.615937 GGCGAGTACAAAGGTTAACTAGC 59.384 47.826 5.42 0.00 39.11 3.42
2124 2321 8.375493 AGGTACTTGGTTGAATACTGATCTAA 57.625 34.615 0.00 0.00 27.25 2.10
2162 2371 6.015603 TCAGATCTCGATCAACAGCAGAATAT 60.016 38.462 9.38 0.00 40.22 1.28
2267 2476 8.209917 ACGGAAGTGCTTAGATTAATTTAAGG 57.790 34.615 21.16 9.66 46.97 2.69
2281 2490 7.297070 AAGTATATCTTGCAACGGAAGTGCTT 61.297 38.462 0.00 0.00 38.73 3.91
2299 2508 4.083855 GCACATGCATGCACGTAAGTATAT 60.084 41.667 25.37 0.00 46.28 0.86
2300 2509 3.247411 GCACATGCATGCACGTAAGTATA 59.753 43.478 25.37 0.00 46.28 1.47
2372 2603 1.877443 GGTGCCGTTGAAGTTGTACAT 59.123 47.619 0.00 0.00 0.00 2.29
2620 2851 1.003718 GGGGAAGAAGTCGGTGGTG 60.004 63.158 0.00 0.00 0.00 4.17
2741 2972 4.382291 AGCAACAAACTTGTCGTATACCA 58.618 39.130 0.00 0.00 41.31 3.25
2742 2973 5.865552 TCTAGCAACAAACTTGTCGTATACC 59.134 40.000 0.00 0.00 41.31 2.73
2743 2974 6.364165 TGTCTAGCAACAAACTTGTCGTATAC 59.636 38.462 0.00 0.00 41.31 1.47
2744 2975 6.364165 GTGTCTAGCAACAAACTTGTCGTATA 59.636 38.462 0.00 0.00 41.31 1.47
2745 2976 5.176958 GTGTCTAGCAACAAACTTGTCGTAT 59.823 40.000 0.00 0.00 41.31 3.06
2746 2977 4.505191 GTGTCTAGCAACAAACTTGTCGTA 59.495 41.667 0.00 0.00 41.31 3.43
2747 2978 3.308866 GTGTCTAGCAACAAACTTGTCGT 59.691 43.478 0.00 0.00 41.31 4.34
2748 2979 3.303132 GGTGTCTAGCAACAAACTTGTCG 60.303 47.826 0.00 0.00 41.31 4.35
2749 2980 3.625764 TGGTGTCTAGCAACAAACTTGTC 59.374 43.478 2.88 0.00 42.70 3.18
2758 2989 1.608283 GGTCCTGTGGTGTCTAGCAAC 60.608 57.143 0.00 0.00 35.84 4.17
2818 3051 0.313043 CATGGATCTCAATTGGGCGC 59.687 55.000 5.42 0.00 0.00 6.53
2908 3142 4.915085 ACAACAAAATTACGTACTGCATGC 59.085 37.500 11.82 11.82 0.00 4.06
2909 3143 6.139435 TCACAACAAAATTACGTACTGCATG 58.861 36.000 0.00 0.00 0.00 4.06
2910 3144 6.307031 TCACAACAAAATTACGTACTGCAT 57.693 33.333 0.00 0.00 0.00 3.96
2911 3145 5.736486 TCACAACAAAATTACGTACTGCA 57.264 34.783 0.00 0.00 0.00 4.41
2979 3213 0.882484 TGAGCAAACAACGGCATCGA 60.882 50.000 0.00 0.00 40.11 3.59
2981 3215 0.874390 TCTGAGCAAACAACGGCATC 59.126 50.000 0.00 0.00 0.00 3.91
2984 3218 0.944386 TCTTCTGAGCAAACAACGGC 59.056 50.000 0.00 0.00 0.00 5.68
2986 3220 3.742882 TGATCTCTTCTGAGCAAACAACG 59.257 43.478 0.00 0.00 40.03 4.10
2987 3221 5.410746 TGATGATCTCTTCTGAGCAAACAAC 59.589 40.000 0.00 0.00 40.03 3.32
2989 3223 5.156608 TGATGATCTCTTCTGAGCAAACA 57.843 39.130 0.00 0.00 40.03 2.83
2990 3224 6.760298 TGTATGATGATCTCTTCTGAGCAAAC 59.240 38.462 0.00 0.00 40.03 2.93
2994 3228 8.087136 TGTATTGTATGATGATCTCTTCTGAGC 58.913 37.037 0.00 0.00 40.03 4.26
2996 3230 9.978044 CTTGTATTGTATGATGATCTCTTCTGA 57.022 33.333 0.00 0.00 0.00 3.27
2997 3231 9.761504 ACTTGTATTGTATGATGATCTCTTCTG 57.238 33.333 0.00 0.00 0.00 3.02
2998 3232 9.761504 CACTTGTATTGTATGATGATCTCTTCT 57.238 33.333 0.00 0.00 0.00 2.85
2999 3233 9.539825 ACACTTGTATTGTATGATGATCTCTTC 57.460 33.333 0.00 0.00 0.00 2.87
3001 3235 9.973450 GTACACTTGTATTGTATGATGATCTCT 57.027 33.333 0.00 0.00 32.18 3.10
3002 3236 8.906693 CGTACACTTGTATTGTATGATGATCTC 58.093 37.037 0.00 0.00 38.30 2.75
3043 3277 9.965824 GAAAGTCATTTCATTTTTCTCTGGTAA 57.034 29.630 0.00 0.00 43.64 2.85
3044 3278 8.576442 GGAAAGTCATTTCATTTTTCTCTGGTA 58.424 33.333 3.41 0.00 45.59 3.25
3045 3279 7.288621 AGGAAAGTCATTTCATTTTTCTCTGGT 59.711 33.333 3.41 0.00 45.59 4.00
3046 3280 7.664758 AGGAAAGTCATTTCATTTTTCTCTGG 58.335 34.615 3.41 0.00 45.59 3.86
3047 3281 8.574737 AGAGGAAAGTCATTTCATTTTTCTCTG 58.425 33.333 5.97 0.00 45.59 3.35
3048 3282 8.703378 AGAGGAAAGTCATTTCATTTTTCTCT 57.297 30.769 1.72 1.72 45.59 3.10
3079 3313 2.562738 AGCAAAGTCCCTGTTAATTGGC 59.437 45.455 0.00 0.00 0.00 4.52
3134 3368 1.449601 CGCCATTACGACCAGCCTT 60.450 57.895 0.00 0.00 34.06 4.35
3135 3369 2.186903 CGCCATTACGACCAGCCT 59.813 61.111 0.00 0.00 34.06 4.58
3136 3370 1.883084 CTCGCCATTACGACCAGCC 60.883 63.158 0.00 0.00 37.09 4.85
3137 3371 0.101759 TACTCGCCATTACGACCAGC 59.898 55.000 0.00 0.00 37.09 4.85
3138 3372 2.034179 TGATACTCGCCATTACGACCAG 59.966 50.000 0.00 0.00 37.09 4.00
3139 3373 2.025898 TGATACTCGCCATTACGACCA 58.974 47.619 0.00 0.00 37.09 4.02
3140 3374 2.787601 TGATACTCGCCATTACGACC 57.212 50.000 0.00 0.00 37.09 4.79
3141 3375 3.639538 ACATGATACTCGCCATTACGAC 58.360 45.455 0.00 0.00 37.09 4.34
3142 3376 4.517832 AGTACATGATACTCGCCATTACGA 59.482 41.667 0.00 0.00 40.36 3.43
3143 3377 4.795268 AGTACATGATACTCGCCATTACG 58.205 43.478 0.00 0.00 0.00 3.18
3144 3378 6.910995 ACTAGTACATGATACTCGCCATTAC 58.089 40.000 0.00 0.00 0.00 1.89
3145 3379 8.803397 ATACTAGTACATGATACTCGCCATTA 57.197 34.615 4.31 0.00 0.00 1.90
3146 3380 7.393515 TGATACTAGTACATGATACTCGCCATT 59.606 37.037 4.31 0.00 0.00 3.16
3147 3381 6.884836 TGATACTAGTACATGATACTCGCCAT 59.115 38.462 4.31 0.00 0.00 4.40
3148 3382 6.235664 TGATACTAGTACATGATACTCGCCA 58.764 40.000 4.31 0.00 0.00 5.69
3149 3383 6.738832 TGATACTAGTACATGATACTCGCC 57.261 41.667 4.31 0.00 0.00 5.54
3150 3384 8.880750 TGTATGATACTAGTACATGATACTCGC 58.119 37.037 19.65 4.36 0.00 5.03
3199 3433 9.083422 ACTTATGATACTATGCACTACAGATGT 57.917 33.333 0.00 0.00 0.00 3.06
3200 3434 9.920133 AACTTATGATACTATGCACTACAGATG 57.080 33.333 0.00 0.00 0.00 2.90
3235 3469 9.903682 CATGCATGCTAATAAATAAAGTTAGCT 57.096 29.630 20.33 0.00 46.43 3.32
3236 3470 9.897744 TCATGCATGCTAATAAATAAAGTTAGC 57.102 29.630 22.25 8.88 46.45 3.09
3247 3481 9.317936 GCTACTATGTATCATGCATGCTAATAA 57.682 33.333 22.25 3.72 0.00 1.40
3248 3482 8.477256 TGCTACTATGTATCATGCATGCTAATA 58.523 33.333 22.25 11.72 0.00 0.98
3249 3483 7.279536 GTGCTACTATGTATCATGCATGCTAAT 59.720 37.037 22.25 12.74 0.00 1.73
3250 3484 6.591448 GTGCTACTATGTATCATGCATGCTAA 59.409 38.462 22.25 5.34 0.00 3.09
3251 3485 6.101997 GTGCTACTATGTATCATGCATGCTA 58.898 40.000 22.25 14.10 0.00 3.49
3252 3486 4.934001 GTGCTACTATGTATCATGCATGCT 59.066 41.667 22.25 15.24 0.00 3.79
3253 3487 4.692155 TGTGCTACTATGTATCATGCATGC 59.308 41.667 22.25 11.82 0.00 4.06
3254 3488 6.592607 TGATGTGCTACTATGTATCATGCATG 59.407 38.462 21.07 21.07 0.00 4.06
3255 3489 6.704310 TGATGTGCTACTATGTATCATGCAT 58.296 36.000 0.00 0.00 0.00 3.96
3256 3490 6.100404 TGATGTGCTACTATGTATCATGCA 57.900 37.500 0.00 0.00 0.00 3.96
3257 3491 7.606858 AATGATGTGCTACTATGTATCATGC 57.393 36.000 0.00 0.00 35.94 4.06
3315 3549 9.336171 GGCATAGAATTAAATGAAGAGAGAGTT 57.664 33.333 4.14 0.00 0.00 3.01
3316 3550 8.489489 TGGCATAGAATTAAATGAAGAGAGAGT 58.511 33.333 4.14 0.00 0.00 3.24
3317 3551 8.772705 GTGGCATAGAATTAAATGAAGAGAGAG 58.227 37.037 0.00 0.00 0.00 3.20
3318 3552 7.716998 GGTGGCATAGAATTAAATGAAGAGAGA 59.283 37.037 0.00 0.00 0.00 3.10
3319 3553 7.718753 AGGTGGCATAGAATTAAATGAAGAGAG 59.281 37.037 0.00 0.00 0.00 3.20
3320 3554 7.577303 AGGTGGCATAGAATTAAATGAAGAGA 58.423 34.615 0.00 0.00 0.00 3.10
3321 3555 7.500227 TGAGGTGGCATAGAATTAAATGAAGAG 59.500 37.037 0.00 0.00 0.00 2.85
3322 3556 7.345691 TGAGGTGGCATAGAATTAAATGAAGA 58.654 34.615 0.00 0.00 0.00 2.87
3323 3557 7.572523 TGAGGTGGCATAGAATTAAATGAAG 57.427 36.000 0.00 0.00 0.00 3.02
3324 3558 7.779326 TGATGAGGTGGCATAGAATTAAATGAA 59.221 33.333 0.00 0.00 0.00 2.57
3325 3559 7.289310 TGATGAGGTGGCATAGAATTAAATGA 58.711 34.615 0.00 0.00 0.00 2.57
3326 3560 7.514784 TGATGAGGTGGCATAGAATTAAATG 57.485 36.000 0.00 0.00 0.00 2.32
3327 3561 8.537728 TTTGATGAGGTGGCATAGAATTAAAT 57.462 30.769 0.00 0.00 0.00 1.40
3328 3562 7.953005 TTTGATGAGGTGGCATAGAATTAAA 57.047 32.000 0.00 0.00 0.00 1.52
3329 3563 8.537728 AATTTGATGAGGTGGCATAGAATTAA 57.462 30.769 0.00 0.00 0.00 1.40
3330 3564 8.415553 CAAATTTGATGAGGTGGCATAGAATTA 58.584 33.333 13.08 0.00 29.85 1.40
3331 3565 7.270047 CAAATTTGATGAGGTGGCATAGAATT 58.730 34.615 13.08 0.00 30.56 2.17
3332 3566 6.684613 GCAAATTTGATGAGGTGGCATAGAAT 60.685 38.462 22.31 0.00 0.00 2.40
3333 3567 5.394443 GCAAATTTGATGAGGTGGCATAGAA 60.394 40.000 22.31 0.00 0.00 2.10
3334 3568 4.098349 GCAAATTTGATGAGGTGGCATAGA 59.902 41.667 22.31 0.00 0.00 1.98
3335 3569 4.365723 GCAAATTTGATGAGGTGGCATAG 58.634 43.478 22.31 0.00 0.00 2.23
3336 3570 3.132646 GGCAAATTTGATGAGGTGGCATA 59.867 43.478 22.31 0.00 0.00 3.14
3337 3571 2.093341 GGCAAATTTGATGAGGTGGCAT 60.093 45.455 22.31 0.00 0.00 4.40
3338 3572 1.275856 GGCAAATTTGATGAGGTGGCA 59.724 47.619 22.31 0.00 0.00 4.92
3339 3573 1.551883 AGGCAAATTTGATGAGGTGGC 59.448 47.619 22.31 5.17 0.00 5.01
3340 3574 4.019174 ACTAGGCAAATTTGATGAGGTGG 58.981 43.478 22.31 5.39 0.00 4.61
3341 3575 5.404946 CAACTAGGCAAATTTGATGAGGTG 58.595 41.667 22.31 17.21 0.00 4.00
3342 3576 4.463891 CCAACTAGGCAAATTTGATGAGGT 59.536 41.667 22.31 9.97 0.00 3.85
3343 3577 5.002464 CCAACTAGGCAAATTTGATGAGG 57.998 43.478 22.31 9.20 0.00 3.86
3357 3591 3.748083 AGTATCATGCATGCCAACTAGG 58.252 45.455 22.25 0.00 41.84 3.02
3358 3592 4.692625 GGTAGTATCATGCATGCCAACTAG 59.307 45.833 22.25 0.00 0.00 2.57
3359 3593 4.347876 AGGTAGTATCATGCATGCCAACTA 59.652 41.667 22.25 21.88 0.00 2.24
3360 3594 3.137176 AGGTAGTATCATGCATGCCAACT 59.863 43.478 22.25 22.78 0.00 3.16
3361 3595 3.480470 AGGTAGTATCATGCATGCCAAC 58.520 45.455 22.25 17.59 0.00 3.77
3362 3596 3.862877 AGGTAGTATCATGCATGCCAA 57.137 42.857 22.25 5.34 0.00 4.52
3363 3597 4.531732 TCATAGGTAGTATCATGCATGCCA 59.468 41.667 22.25 8.84 0.00 4.92
3364 3598 5.089970 TCATAGGTAGTATCATGCATGCC 57.910 43.478 22.25 15.40 0.00 4.40
3365 3599 7.495901 AGTATCATAGGTAGTATCATGCATGC 58.504 38.462 22.25 11.82 0.00 4.06
3366 3600 9.958234 GTAGTATCATAGGTAGTATCATGCATG 57.042 37.037 21.07 21.07 0.00 4.06
3367 3601 9.137459 GGTAGTATCATAGGTAGTATCATGCAT 57.863 37.037 0.00 0.00 0.00 3.96
3368 3602 8.113462 TGGTAGTATCATAGGTAGTATCATGCA 58.887 37.037 0.00 0.00 0.00 3.96
3369 3603 8.521170 TGGTAGTATCATAGGTAGTATCATGC 57.479 38.462 0.00 0.00 0.00 4.06
3375 3609 9.658799 GTCGTAATGGTAGTATCATAGGTAGTA 57.341 37.037 0.00 0.00 0.00 1.82
3376 3610 7.609532 GGTCGTAATGGTAGTATCATAGGTAGT 59.390 40.741 0.00 0.00 0.00 2.73
3377 3611 7.609146 TGGTCGTAATGGTAGTATCATAGGTAG 59.391 40.741 0.00 0.00 0.00 3.18
3378 3612 7.460910 TGGTCGTAATGGTAGTATCATAGGTA 58.539 38.462 0.00 0.00 0.00 3.08
3379 3613 6.309357 TGGTCGTAATGGTAGTATCATAGGT 58.691 40.000 0.00 0.00 0.00 3.08
3380 3614 6.625300 GCTGGTCGTAATGGTAGTATCATAGG 60.625 46.154 0.00 0.00 0.00 2.57
3381 3615 6.323266 GCTGGTCGTAATGGTAGTATCATAG 58.677 44.000 0.00 0.00 0.00 2.23
3382 3616 5.184479 GGCTGGTCGTAATGGTAGTATCATA 59.816 44.000 0.00 0.00 0.00 2.15
3383 3617 4.021368 GGCTGGTCGTAATGGTAGTATCAT 60.021 45.833 0.00 0.00 0.00 2.45
3384 3618 3.319972 GGCTGGTCGTAATGGTAGTATCA 59.680 47.826 0.00 0.00 0.00 2.15
3385 3619 3.573110 AGGCTGGTCGTAATGGTAGTATC 59.427 47.826 0.00 0.00 0.00 2.24
3386 3620 3.573695 AGGCTGGTCGTAATGGTAGTAT 58.426 45.455 0.00 0.00 0.00 2.12
3387 3621 3.022557 AGGCTGGTCGTAATGGTAGTA 57.977 47.619 0.00 0.00 0.00 1.82
3388 3622 1.861982 AGGCTGGTCGTAATGGTAGT 58.138 50.000 0.00 0.00 0.00 2.73
3389 3623 4.098960 TCTTTAGGCTGGTCGTAATGGTAG 59.901 45.833 0.00 0.00 0.00 3.18
3390 3624 4.025360 TCTTTAGGCTGGTCGTAATGGTA 58.975 43.478 0.00 0.00 0.00 3.25
3391 3625 2.835764 TCTTTAGGCTGGTCGTAATGGT 59.164 45.455 0.00 0.00 0.00 3.55
3392 3626 3.536956 TCTTTAGGCTGGTCGTAATGG 57.463 47.619 0.00 0.00 0.00 3.16
3393 3627 5.116180 TGATTCTTTAGGCTGGTCGTAATG 58.884 41.667 0.00 0.00 0.00 1.90
3394 3628 5.353394 TGATTCTTTAGGCTGGTCGTAAT 57.647 39.130 0.00 0.00 0.00 1.89
3395 3629 4.811969 TGATTCTTTAGGCTGGTCGTAA 57.188 40.909 0.00 0.00 0.00 3.18
3396 3630 4.020928 TGTTGATTCTTTAGGCTGGTCGTA 60.021 41.667 0.00 0.00 0.00 3.43
3397 3631 3.244422 TGTTGATTCTTTAGGCTGGTCGT 60.244 43.478 0.00 0.00 0.00 4.34
3398 3632 3.125316 GTGTTGATTCTTTAGGCTGGTCG 59.875 47.826 0.00 0.00 0.00 4.79
3399 3633 3.440522 GGTGTTGATTCTTTAGGCTGGTC 59.559 47.826 0.00 0.00 0.00 4.02
3400 3634 3.421844 GGTGTTGATTCTTTAGGCTGGT 58.578 45.455 0.00 0.00 0.00 4.00
3401 3635 2.755103 GGGTGTTGATTCTTTAGGCTGG 59.245 50.000 0.00 0.00 0.00 4.85
3402 3636 3.420893 TGGGTGTTGATTCTTTAGGCTG 58.579 45.455 0.00 0.00 0.00 4.85
3403 3637 3.562176 CCTGGGTGTTGATTCTTTAGGCT 60.562 47.826 0.00 0.00 0.00 4.58
3404 3638 2.755103 CCTGGGTGTTGATTCTTTAGGC 59.245 50.000 0.00 0.00 0.00 3.93
3405 3639 3.010138 TCCCTGGGTGTTGATTCTTTAGG 59.990 47.826 13.56 0.00 0.00 2.69
3406 3640 4.301072 TCCCTGGGTGTTGATTCTTTAG 57.699 45.455 13.56 0.00 0.00 1.85
3407 3641 4.946160 ATCCCTGGGTGTTGATTCTTTA 57.054 40.909 13.56 0.00 0.00 1.85
3408 3642 3.833559 ATCCCTGGGTGTTGATTCTTT 57.166 42.857 13.56 0.00 0.00 2.52
3412 3646 2.919602 ACACTATCCCTGGGTGTTGATT 59.080 45.455 13.56 0.00 40.68 2.57
3422 3656 7.113658 ACAGTAGATGTAAACACTATCCCTG 57.886 40.000 0.00 0.00 41.60 4.45
3423 3657 6.895756 TGACAGTAGATGTAAACACTATCCCT 59.104 38.462 0.00 0.00 44.17 4.20
3424 3658 7.108841 TGACAGTAGATGTAAACACTATCCC 57.891 40.000 0.00 0.00 44.17 3.85
3511 3752 6.169800 GCTTCCTAGTTTCAGACTCTTCAAT 58.830 40.000 0.00 0.00 39.86 2.57
3603 3844 2.091994 AGATTCCTCTTGCATCCCCTTG 60.092 50.000 0.00 0.00 0.00 3.61
3604 3845 2.212420 AGATTCCTCTTGCATCCCCTT 58.788 47.619 0.00 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.