Multiple sequence alignment - TraesCS1A01G214400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G214400 chr1A 100.000 4720 0 0 1 4720 377447594 377442875 0.000000e+00 8717.0
1 TraesCS1A01G214400 chr1B 92.562 1936 83 21 1536 3418 409635277 409633350 0.000000e+00 2721.0
2 TraesCS1A01G214400 chr1B 94.444 594 24 2 951 1536 409636014 409635422 0.000000e+00 905.0
3 TraesCS1A01G214400 chr1B 80.060 993 88 37 1 924 409636964 409636013 1.850000e-178 636.0
4 TraesCS1A01G214400 chr1B 83.036 224 34 3 4498 4719 364426672 364426451 2.880000e-47 200.0
5 TraesCS1A01G214400 chr1B 89.706 136 5 2 3453 3579 409633348 409633213 1.050000e-36 165.0
6 TraesCS1A01G214400 chr1D 90.160 1809 99 36 2052 3801 302824508 302822720 0.000000e+00 2281.0
7 TraesCS1A01G214400 chr1D 90.342 818 53 9 734 1536 302826025 302825219 0.000000e+00 1050.0
8 TraesCS1A01G214400 chr1D 87.337 537 46 10 1536 2055 302825076 302824545 3.140000e-166 595.0
9 TraesCS1A01G214400 chr1D 90.674 193 13 2 2 193 302871328 302871140 7.840000e-63 252.0
10 TraesCS1A01G214400 chr1D 82.143 224 36 3 4498 4719 250133390 250133611 6.240000e-44 189.0
11 TraesCS1A01G214400 chr1D 97.143 35 1 0 284 318 302837796 302837762 5.100000e-05 60.2
12 TraesCS1A01G214400 chr3B 85.472 826 90 17 2635 3430 84737787 84736962 0.000000e+00 833.0
13 TraesCS1A01G214400 chr3B 81.226 522 57 18 2052 2536 84738372 84737855 2.660000e-102 383.0
14 TraesCS1A01G214400 chr3B 81.672 311 48 4 1685 1986 84738779 84738469 2.820000e-62 250.0
15 TraesCS1A01G214400 chr3B 84.753 223 9 2 3839 4061 13748854 13748657 2.880000e-47 200.0
16 TraesCS1A01G214400 chr3B 88.800 125 12 2 3424 3546 84736510 84736386 8.180000e-33 152.0
17 TraesCS1A01G214400 chr3D 87.117 652 71 6 2676 3314 54387027 54386376 0.000000e+00 726.0
18 TraesCS1A01G214400 chr3D 84.375 448 40 14 2118 2535 54387571 54387124 3.400000e-111 412.0
19 TraesCS1A01G214400 chr3D 84.211 304 46 2 1685 1986 54388100 54387797 1.280000e-75 294.0
20 TraesCS1A01G214400 chr3D 90.728 151 11 3 3652 3801 288550451 288550599 1.040000e-46 198.0
21 TraesCS1A01G214400 chr2A 82.581 798 135 4 3802 4595 744063543 744062746 0.000000e+00 701.0
22 TraesCS1A01G214400 chr2A 92.806 139 7 3 3663 3800 176673414 176673278 1.040000e-46 198.0
23 TraesCS1A01G214400 chr3A 87.179 468 51 8 2972 3430 65350854 65350387 1.500000e-144 523.0
24 TraesCS1A01G214400 chr3A 83.964 449 42 14 2118 2536 65354909 65354461 2.050000e-108 403.0
25 TraesCS1A01G214400 chr3A 85.154 357 30 8 2628 2961 65354399 65354043 1.260000e-90 344.0
26 TraesCS1A01G214400 chr3A 84.211 304 46 2 1685 1986 65355438 65355135 1.280000e-75 294.0
27 TraesCS1A01G214400 chr3A 94.286 35 2 0 3512 3546 65350348 65350314 2.000000e-03 54.7
28 TraesCS1A01G214400 chr4A 95.000 140 5 2 3663 3801 48905986 48905848 7.950000e-53 219.0
29 TraesCS1A01G214400 chr4A 81.974 233 36 5 4490 4719 727271794 727272023 4.820000e-45 193.0
30 TraesCS1A01G214400 chr2D 84.018 219 35 0 4501 4719 72768068 72767850 1.330000e-50 211.0
31 TraesCS1A01G214400 chr7D 93.617 141 5 3 3660 3799 34756867 34757004 1.720000e-49 207.0
32 TraesCS1A01G214400 chr7D 81.735 219 40 0 4501 4719 35531119 35530901 2.900000e-42 183.0
33 TraesCS1A01G214400 chr6A 93.007 143 6 3 3660 3801 27188898 27189037 6.190000e-49 206.0
34 TraesCS1A01G214400 chr6D 91.892 148 8 4 3656 3801 303060010 303059865 2.230000e-48 204.0
35 TraesCS1A01G214400 chr5D 91.781 146 8 3 3656 3801 528717431 528717290 2.880000e-47 200.0
36 TraesCS1A01G214400 chr5B 93.431 137 5 3 3665 3801 665744613 665744481 2.880000e-47 200.0
37 TraesCS1A01G214400 chr5A 91.781 146 8 3 3656 3801 656872438 656872297 2.880000e-47 200.0
38 TraesCS1A01G214400 chr6B 87.059 170 21 1 4551 4719 182317891 182318060 1.730000e-44 191.0
39 TraesCS1A01G214400 chr2B 86.301 73 9 1 4551 4622 322450088 322450016 1.410000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G214400 chr1A 377442875 377447594 4719 True 8717.000000 8717 100.000000 1 4720 1 chr1A.!!$R1 4719
1 TraesCS1A01G214400 chr1B 409633213 409636964 3751 True 1106.750000 2721 89.193000 1 3579 4 chr1B.!!$R2 3578
2 TraesCS1A01G214400 chr1D 302822720 302826025 3305 True 1308.666667 2281 89.279667 734 3801 3 chr1D.!!$R3 3067
3 TraesCS1A01G214400 chr3B 84736386 84738779 2393 True 404.500000 833 84.292500 1685 3546 4 chr3B.!!$R2 1861
4 TraesCS1A01G214400 chr3D 54386376 54388100 1724 True 477.333333 726 85.234333 1685 3314 3 chr3D.!!$R1 1629
5 TraesCS1A01G214400 chr2A 744062746 744063543 797 True 701.000000 701 82.581000 3802 4595 1 chr2A.!!$R2 793
6 TraesCS1A01G214400 chr3A 65350314 65355438 5124 True 323.740000 523 86.958800 1685 3546 5 chr3A.!!$R1 1861

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
340 371 0.190815 ACCTGACCCATTTTGCCCTT 59.809 50.0 0.00 0.00 0.00 3.95 F
345 376 0.190815 ACCCATTTTGCCCTTCAGGT 59.809 50.0 0.00 0.00 38.26 4.00 F
1594 1819 0.178964 TTGGTTTCTTCCCAGGCCTG 60.179 55.0 26.87 26.87 32.49 4.85 F
2397 2802 0.695803 AGATGGTGAGGGGTGGATCC 60.696 60.0 4.20 4.20 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1360 1438 0.249868 CCTGTTTGCTGAGTGTCCGA 60.250 55.000 0.0 0.0 0.00 4.55 R
1711 1937 0.462047 CCCGATTAACAGCTCGCCTT 60.462 55.000 0.0 0.0 33.63 4.35 R
2949 3398 1.488393 GGGAAGGAGATCAGTCTTGGG 59.512 57.143 0.0 0.0 33.97 4.12 R
4344 8481 0.171903 CCGCATGGAAAGCAGGAAAG 59.828 55.000 0.0 0.0 37.49 2.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.877743 GTGGTGCTCTTTCTCTTGGC 59.122 55.000 0.00 0.00 0.00 4.52
20 21 0.603707 TGGTGCTCTTTCTCTTGGCG 60.604 55.000 0.00 0.00 0.00 5.69
34 35 5.348986 TCTCTTGGCGTAGATTACAACATC 58.651 41.667 0.00 0.00 0.00 3.06
44 45 7.043590 GCGTAGATTACAACATCGTTGAGTAAT 60.044 37.037 19.26 19.26 38.75 1.89
45 46 8.259872 CGTAGATTACAACATCGTTGAGTAATG 58.740 37.037 21.86 11.54 37.53 1.90
46 47 7.539712 AGATTACAACATCGTTGAGTAATGG 57.460 36.000 21.86 0.00 37.53 3.16
95 96 1.612463 GGTACGTATCCTAGGGCACAG 59.388 57.143 9.46 6.48 0.00 3.66
113 114 2.032981 GCCAAATGTAGGCCATCCG 58.967 57.895 5.01 0.00 46.50 4.18
142 143 0.884704 CTTGGTGACCGACTGTTGGG 60.885 60.000 18.18 8.04 0.00 4.12
150 151 0.898320 CCGACTGTTGGGTCTCATCT 59.102 55.000 6.15 0.00 34.38 2.90
151 152 1.404717 CCGACTGTTGGGTCTCATCTG 60.405 57.143 6.15 0.00 34.38 2.90
194 196 5.244178 ACTGTAGACACTTGGTTCCTTAGAG 59.756 44.000 0.00 0.00 0.00 2.43
196 198 5.836898 TGTAGACACTTGGTTCCTTAGAGAA 59.163 40.000 0.00 0.00 0.00 2.87
226 234 1.495878 GTATCTGACGCCATGAGCTG 58.504 55.000 0.00 0.00 40.39 4.24
238 246 1.028330 ATGAGCTGGTGTCGCAATGG 61.028 55.000 0.00 0.00 0.00 3.16
268 276 4.751431 GCCCTTGGCTCATTGTCT 57.249 55.556 0.00 0.00 46.69 3.41
273 281 1.471684 CCTTGGCTCATTGTCTTCAGC 59.528 52.381 0.00 0.00 0.00 4.26
277 285 1.467734 GGCTCATTGTCTTCAGCACTG 59.532 52.381 0.00 0.00 0.00 3.66
289 297 5.239525 GTCTTCAGCACTGTATTTCTTGGTT 59.760 40.000 0.00 0.00 0.00 3.67
324 355 2.767505 GCTAAGCCATGCGTATAACCT 58.232 47.619 0.00 0.00 0.00 3.50
340 371 0.190815 ACCTGACCCATTTTGCCCTT 59.809 50.000 0.00 0.00 0.00 3.95
341 372 0.897621 CCTGACCCATTTTGCCCTTC 59.102 55.000 0.00 0.00 0.00 3.46
342 373 1.631405 CTGACCCATTTTGCCCTTCA 58.369 50.000 0.00 0.00 0.00 3.02
343 374 1.547372 CTGACCCATTTTGCCCTTCAG 59.453 52.381 0.00 0.00 0.00 3.02
345 376 0.190815 ACCCATTTTGCCCTTCAGGT 59.809 50.000 0.00 0.00 38.26 4.00
354 394 0.910088 GCCCTTCAGGTGTACCTCCT 60.910 60.000 0.00 1.47 46.65 3.69
355 395 0.905357 CCCTTCAGGTGTACCTCCTG 59.095 60.000 21.14 21.14 46.65 3.86
367 407 3.949754 TGTACCTCCTGTATAGTTGACGG 59.050 47.826 0.00 0.00 0.00 4.79
387 427 1.659098 GTCAAATCTAGTTGACGCCCG 59.341 52.381 9.67 0.00 45.71 6.13
397 437 3.047280 GACGCCCGCATGTGTCAA 61.047 61.111 5.38 0.00 43.55 3.18
399 439 3.049674 CGCCCGCATGTGTCAACT 61.050 61.111 5.38 0.00 0.00 3.16
400 440 1.739929 CGCCCGCATGTGTCAACTA 60.740 57.895 5.38 0.00 0.00 2.24
404 444 0.249120 CCGCATGTGTCAACTAGGGA 59.751 55.000 5.38 0.00 0.00 4.20
412 452 1.771854 TGTCAACTAGGGAAGCCAACA 59.228 47.619 0.00 0.00 0.00 3.33
413 453 2.152016 GTCAACTAGGGAAGCCAACAC 58.848 52.381 0.00 0.00 0.00 3.32
440 480 2.039624 AGCGAGGTGGGTCATCCT 59.960 61.111 0.00 0.00 36.70 3.24
446 486 1.763545 GAGGTGGGTCATCCTAGTTCC 59.236 57.143 0.00 0.00 33.83 3.62
450 490 1.559682 TGGGTCATCCTAGTTCCTTGC 59.440 52.381 0.00 0.00 36.20 4.01
455 495 1.961180 ATCCTAGTTCCTTGCGCGCT 61.961 55.000 33.29 12.72 0.00 5.92
457 497 1.446099 CTAGTTCCTTGCGCGCTGA 60.446 57.895 33.29 22.19 0.00 4.26
480 520 2.539338 TTCGTTGTCCGCTGGTTGC 61.539 57.895 0.00 0.00 36.19 4.17
493 533 2.545742 GCTGGTTGCCGTTCTTTTCATT 60.546 45.455 0.00 0.00 35.15 2.57
509 549 7.579726 TCTTTTCATTGTGGTTTTTGTTTGTG 58.420 30.769 0.00 0.00 0.00 3.33
517 557 8.608844 TTGTGGTTTTTGTTTGTGTTTTCTAT 57.391 26.923 0.00 0.00 0.00 1.98
603 643 9.881529 TTTTATTTTCTAATACACCGTGAACAC 57.118 29.630 5.28 0.00 0.00 3.32
604 644 8.604640 TTATTTTCTAATACACCGTGAACACA 57.395 30.769 5.28 0.00 0.00 3.72
619 659 5.458452 CGTGAACACATTTTTAATGCACAGT 59.542 36.000 5.80 0.00 0.00 3.55
623 663 7.710044 TGAACACATTTTTAATGCACAGTGAAT 59.290 29.630 4.15 0.00 0.00 2.57
625 665 8.519492 ACACATTTTTAATGCACAGTGAATAC 57.481 30.769 4.15 0.00 0.00 1.89
629 669 9.630098 CATTTTTAATGCACAGTGAATACTTCT 57.370 29.630 4.15 0.00 34.07 2.85
877 935 5.952526 GGAGAAAATCCGACTAAAAACCA 57.047 39.130 0.00 0.00 38.67 3.67
912 981 1.985116 AGAGTGGGCCGTCCTTCTC 60.985 63.158 0.00 6.67 37.42 2.87
915 984 2.683933 TGGGCCGTCCTTCTCCTC 60.684 66.667 0.00 0.00 36.20 3.71
936 1005 4.682563 TCTTTGGAGGTCTCTCTCTCATT 58.317 43.478 0.00 0.00 39.86 2.57
940 1009 2.316108 GAGGTCTCTCTCTCATTCCCC 58.684 57.143 0.00 0.00 37.07 4.81
953 1022 1.613437 CATTCCCCGATTTATGTGGCC 59.387 52.381 0.00 0.00 0.00 5.36
954 1023 0.464735 TTCCCCGATTTATGTGGCCG 60.465 55.000 0.00 0.00 0.00 6.13
957 1026 1.604604 CCCGATTTATGTGGCCGAAT 58.395 50.000 0.00 0.00 0.00 3.34
1288 1357 0.321653 CACCTCCCTTCGGAAACCAG 60.322 60.000 0.00 0.00 37.86 4.00
1353 1431 1.149148 GCAACTTGACCGTCTTCTCC 58.851 55.000 0.00 0.00 0.00 3.71
1360 1438 1.803366 GACCGTCTTCTCCACCGTGT 61.803 60.000 0.00 0.00 0.00 4.49
1375 1453 0.874175 CGTGTCGGACACTCAGCAAA 60.874 55.000 31.68 0.00 46.46 3.68
1491 1571 5.882557 TGGATGCTTTTCTTGGAGATTCTAC 59.117 40.000 0.00 0.00 0.00 2.59
1505 1585 5.394333 GGAGATTCTACCACTTGTACTGGTC 60.394 48.000 8.46 0.00 41.38 4.02
1594 1819 0.178964 TTGGTTTCTTCCCAGGCCTG 60.179 55.000 26.87 26.87 32.49 4.85
1613 1839 1.429463 GGCCGATACATAGCCTTTCG 58.571 55.000 0.00 0.00 43.62 3.46
1621 1847 3.252974 ACATAGCCTTTCGGTTCTCAG 57.747 47.619 0.00 0.00 0.00 3.35
1667 1893 3.284449 AAGCGCCGCCGAAAAGTT 61.284 55.556 4.98 0.00 36.29 2.66
1679 1905 2.550208 CCGAAAAGTTGGTCCTAGCTGT 60.550 50.000 0.00 0.00 0.00 4.40
1698 1924 4.324991 GGTTCGAGCACCGGGGTT 62.325 66.667 5.12 0.00 39.14 4.11
1711 1937 1.544703 GGGGTTGGGAAGGGAAACA 59.455 57.895 0.00 0.00 0.00 2.83
1723 1949 1.172812 GGGAAACAAGGCGAGCTGTT 61.173 55.000 0.00 0.00 37.36 3.16
1790 2016 3.148279 GCACGGGAGGAGACGGAT 61.148 66.667 0.00 0.00 0.00 4.18
1800 2026 2.036731 AGACGGATCGGTGGGACA 59.963 61.111 11.07 0.00 0.00 4.02
1972 2207 3.237268 TCACAGCTGTAATGGGGTTTT 57.763 42.857 21.20 0.00 0.00 2.43
2005 2274 7.492077 AGTAATAGGTGGTTACAGTAGCTTT 57.508 36.000 0.00 0.00 35.11 3.51
2165 2538 2.047274 CCTGCGGTGTGTACCCAG 60.047 66.667 0.00 0.00 44.53 4.45
2270 2643 4.859798 TGTCACTTTTGTTTTAACCGCTTG 59.140 37.500 0.00 0.00 0.00 4.01
2289 2690 3.023946 TGTGCGATGGAATTGTTTTGG 57.976 42.857 0.00 0.00 0.00 3.28
2295 2696 2.629336 TGGAATTGTTTTGGGTTGGC 57.371 45.000 0.00 0.00 0.00 4.52
2397 2802 0.695803 AGATGGTGAGGGGTGGATCC 60.696 60.000 4.20 4.20 0.00 3.36
2434 2839 2.549754 CAGTTGCAGTTACAAGTGGGAG 59.450 50.000 4.53 0.00 43.99 4.30
2522 2927 7.559897 TGAGTAAGAACCAAGTGAAATTCCTTT 59.440 33.333 0.00 0.00 0.00 3.11
2561 2966 5.987347 AGCTTGACCACATTCTCAATTTTTG 59.013 36.000 0.00 0.00 0.00 2.44
2564 2969 7.536895 TTGACCACATTCTCAATTTTTGTTG 57.463 32.000 0.00 0.00 0.00 3.33
2567 2985 7.064371 TGACCACATTCTCAATTTTTGTTGTTG 59.936 33.333 0.00 0.00 0.00 3.33
2686 3118 2.143876 ATGGCCAGTTCACCAATACC 57.856 50.000 13.05 0.00 39.96 2.73
2810 3251 6.017400 ACTTCTTTACTGACAATGCATTGG 57.983 37.500 35.85 23.59 41.96 3.16
2885 3327 3.157087 CAGGCAAGTTGGAGTTTATGGT 58.843 45.455 4.75 0.00 0.00 3.55
2927 3374 9.621239 TCATCTCCTTAGATTTATTCCCTGTAT 57.379 33.333 0.00 0.00 40.65 2.29
2944 3393 8.603898 TCCCTGTATTTCTGTATCTCTGTTAA 57.396 34.615 0.00 0.00 0.00 2.01
2992 6621 5.823045 CCATCCCTTAAAACTAGCAGTTAGG 59.177 44.000 2.60 5.92 37.47 2.69
3002 6631 0.176680 AGCAGTTAGGCACATCTCGG 59.823 55.000 0.00 0.00 35.83 4.63
3037 6666 2.627699 TCATTGACTTTTGGTGCCCTTC 59.372 45.455 0.00 0.00 0.00 3.46
3122 6751 5.240844 ACCAAAAGATGAAGGTAAGAAACGG 59.759 40.000 0.00 0.00 31.32 4.44
3432 7083 1.953686 GCTTGTAAACCTGCAAGTGGA 59.046 47.619 0.00 0.00 44.55 4.02
3549 7666 3.366052 AAAGTGGTCTGGTGAAAGTGT 57.634 42.857 0.00 0.00 0.00 3.55
3554 7671 2.222027 GGTCTGGTGAAAGTGTCTTGG 58.778 52.381 0.00 0.00 0.00 3.61
3605 7727 6.704050 GCTTTGCTTATTTGACCCTTTTGTTA 59.296 34.615 0.00 0.00 0.00 2.41
3607 7729 8.600449 TTTGCTTATTTGACCCTTTTGTTATG 57.400 30.769 0.00 0.00 0.00 1.90
3633 7763 3.776969 ACTATCAGTCCTGGAGATTGCAA 59.223 43.478 0.00 0.00 32.40 4.08
3638 7768 3.571401 CAGTCCTGGAGATTGCAAGTTTT 59.429 43.478 4.94 0.00 0.00 2.43
3639 7769 3.823304 AGTCCTGGAGATTGCAAGTTTTC 59.177 43.478 4.94 0.00 0.00 2.29
3640 7770 3.569701 GTCCTGGAGATTGCAAGTTTTCA 59.430 43.478 4.94 0.00 0.00 2.69
3643 7773 4.746611 CCTGGAGATTGCAAGTTTTCAAAC 59.253 41.667 4.94 0.00 39.17 2.93
3679 7809 4.625225 AACCCCCTCCATTCACAAATAT 57.375 40.909 0.00 0.00 0.00 1.28
3680 7810 5.742562 AACCCCCTCCATTCACAAATATA 57.257 39.130 0.00 0.00 0.00 0.86
3681 7811 5.742562 ACCCCCTCCATTCACAAATATAA 57.257 39.130 0.00 0.00 0.00 0.98
3682 7812 5.705400 ACCCCCTCCATTCACAAATATAAG 58.295 41.667 0.00 0.00 0.00 1.73
3721 7855 6.327279 TCAATATGGACTACATACGGACTG 57.673 41.667 0.00 0.00 44.41 3.51
3741 7875 5.883661 ACTGAAATGAGTGAACAAACACAG 58.116 37.500 0.00 0.00 42.45 3.66
3742 7876 5.415701 ACTGAAATGAGTGAACAAACACAGT 59.584 36.000 0.00 0.00 42.45 3.55
3825 7959 2.255770 TTTTTGAACAAGGGGGTGGT 57.744 45.000 0.00 0.00 0.00 4.16
3831 7965 3.902112 CAAGGGGGTGGTGCCACT 61.902 66.667 19.37 0.00 45.52 4.00
3855 7989 3.730061 GCACCTTTCATTGATCTCAAGCG 60.730 47.826 0.00 0.00 39.47 4.68
3858 7992 3.119743 CCTTTCATTGATCTCAAGCGCAA 60.120 43.478 11.47 0.00 39.47 4.85
3865 7999 3.398406 TGATCTCAAGCGCAAGTTACAA 58.602 40.909 11.47 0.00 41.68 2.41
3866 8000 3.186409 TGATCTCAAGCGCAAGTTACAAC 59.814 43.478 11.47 0.00 41.68 3.32
3869 8005 2.543848 CTCAAGCGCAAGTTACAACTGA 59.456 45.455 11.47 0.00 39.66 3.41
3882 8018 8.612619 CAAGTTACAACTGAGATTTTACAGTGT 58.387 33.333 0.00 0.00 44.94 3.55
3887 8023 6.601613 ACAACTGAGATTTTACAGTGTTCCAA 59.398 34.615 0.00 0.00 44.94 3.53
3890 8026 7.875971 ACTGAGATTTTACAGTGTTCCAAATC 58.124 34.615 18.66 18.66 44.18 2.17
3891 8027 6.898041 TGAGATTTTACAGTGTTCCAAATCG 58.102 36.000 19.44 0.00 38.39 3.34
3907 8043 7.067496 TCCAAATCGAGATTTCCTAGCTTAT 57.933 36.000 7.99 0.00 38.84 1.73
3908 8044 6.931281 TCCAAATCGAGATTTCCTAGCTTATG 59.069 38.462 7.99 0.00 38.84 1.90
3928 8064 4.397481 TGAAGCATAGGACAGTGATCAG 57.603 45.455 0.00 0.00 0.00 2.90
3931 8067 2.102757 AGCATAGGACAGTGATCAGCTG 59.897 50.000 7.63 7.63 39.67 4.24
3937 8073 1.934525 GACAGTGATCAGCTGCATGAG 59.065 52.381 19.09 0.00 37.47 2.90
3964 8100 9.686683 ATCTGCTATTACAAACTAAAATGGAGT 57.313 29.630 0.00 0.00 0.00 3.85
3981 8117 2.026262 GGAGTAACCATTGGGAGCTGAA 60.026 50.000 7.78 0.00 38.79 3.02
3987 8123 3.118531 ACCATTGGGAGCTGAAGAGTAT 58.881 45.455 7.78 0.00 38.05 2.12
3994 8130 2.877168 GGAGCTGAAGAGTATGCATTGG 59.123 50.000 3.54 0.00 0.00 3.16
4017 8153 1.904144 CATTGACATGCGCTTTCCTG 58.096 50.000 9.73 0.83 0.00 3.86
4020 8156 2.177394 TGACATGCGCTTTCCTGTTA 57.823 45.000 9.73 0.00 0.00 2.41
4036 8172 1.992557 TGTTAAGCTCCCTGGGAATGT 59.007 47.619 17.81 6.90 0.00 2.71
4037 8173 3.186283 TGTTAAGCTCCCTGGGAATGTA 58.814 45.455 17.81 5.89 0.00 2.29
4038 8174 3.785887 TGTTAAGCTCCCTGGGAATGTAT 59.214 43.478 17.81 4.31 0.00 2.29
4041 8177 1.048601 GCTCCCTGGGAATGTATCGA 58.951 55.000 17.81 0.00 0.00 3.59
4065 8201 7.531280 AACATCAGTTCGAATCTGATTAGTG 57.469 36.000 26.63 21.94 46.39 2.74
4067 8203 4.433615 TCAGTTCGAATCTGATTAGTGGC 58.566 43.478 19.73 0.00 37.07 5.01
4068 8204 4.081697 TCAGTTCGAATCTGATTAGTGGCA 60.082 41.667 19.73 0.00 37.07 4.92
4077 8213 4.005650 TCTGATTAGTGGCAGCAAAGAAG 58.994 43.478 0.00 0.00 32.27 2.85
4080 8216 3.417069 TTAGTGGCAGCAAAGAAGCTA 57.583 42.857 0.00 0.00 44.54 3.32
4116 8252 1.193462 TTTCCCAATGGCCAGGCTTG 61.193 55.000 13.05 11.32 0.00 4.01
4117 8253 2.284112 CCCAATGGCCAGGCTTGT 60.284 61.111 13.05 0.00 0.00 3.16
4119 8255 0.614415 CCCAATGGCCAGGCTTGTTA 60.614 55.000 13.05 0.00 0.00 2.41
4120 8256 0.532115 CCAATGGCCAGGCTTGTTAC 59.468 55.000 13.05 0.00 0.00 2.50
4131 8268 4.985409 CCAGGCTTGTTACGAATATCTCTC 59.015 45.833 0.00 0.00 0.00 3.20
4140 8277 1.910175 CGAATATCTCTCGATGCTGCG 59.090 52.381 0.00 0.00 38.61 5.18
4174 8311 7.732840 CCAAAGTCTGGTTGTCTGTAAGAAATG 60.733 40.741 0.00 0.00 42.64 2.32
4187 8324 8.079211 TCTGTAAGAAATGTAGCCTCAGTTAT 57.921 34.615 0.00 0.00 42.31 1.89
4189 8326 9.469807 CTGTAAGAAATGTAGCCTCAGTTATAG 57.530 37.037 0.00 0.00 34.07 1.31
4194 8331 5.832539 ATGTAGCCTCAGTTATAGCCAAT 57.167 39.130 0.00 0.00 0.00 3.16
4195 8332 5.630415 TGTAGCCTCAGTTATAGCCAATT 57.370 39.130 0.00 0.00 0.00 2.32
4196 8333 6.001449 TGTAGCCTCAGTTATAGCCAATTT 57.999 37.500 0.00 0.00 0.00 1.82
4201 8338 6.043243 AGCCTCAGTTATAGCCAATTTAGCTA 59.957 38.462 8.93 8.93 46.32 3.32
4227 8364 2.168106 CTGATCTGCTACCTGAAGTGCT 59.832 50.000 0.00 0.00 0.00 4.40
4228 8365 2.167281 TGATCTGCTACCTGAAGTGCTC 59.833 50.000 0.00 0.00 0.00 4.26
4235 8372 1.889545 ACCTGAAGTGCTCTTGCTTC 58.110 50.000 5.61 2.70 40.90 3.86
4241 8378 2.359107 TGCTCTTGCTTCCGCCTG 60.359 61.111 0.00 0.00 40.48 4.85
4258 8395 1.831652 CTGAAGCGGGGAGTCAACCT 61.832 60.000 0.00 0.00 0.00 3.50
4260 8397 1.827399 GAAGCGGGGAGTCAACCTGA 61.827 60.000 0.00 0.00 36.43 3.86
4268 8405 3.084786 GGGAGTCAACCTGATTTTCCAG 58.915 50.000 0.00 0.00 30.65 3.86
4276 8413 3.152341 ACCTGATTTTCCAGAGCAAGTG 58.848 45.455 0.00 0.00 36.29 3.16
4293 8430 1.490621 GTGCACACACCTCAATTTGC 58.509 50.000 13.17 0.00 41.21 3.68
4296 8433 1.067516 GCACACACCTCAATTTGCTGT 59.932 47.619 0.00 0.00 0.00 4.40
4299 8436 2.760092 ACACACCTCAATTTGCTGTTGT 59.240 40.909 0.00 0.00 0.00 3.32
4303 8440 4.099881 ACACCTCAATTTGCTGTTGTTCAT 59.900 37.500 0.00 0.00 0.00 2.57
4308 8445 5.214417 TCAATTTGCTGTTGTTCATCTTCG 58.786 37.500 0.00 0.00 0.00 3.79
4331 8468 4.323553 AGTAGATGAGTACGCCAATTCC 57.676 45.455 0.00 0.00 0.00 3.01
4332 8469 2.622064 AGATGAGTACGCCAATTCCC 57.378 50.000 0.00 0.00 0.00 3.97
4344 8481 2.226200 GCCAATTCCCACAATGTTTTGC 59.774 45.455 0.00 0.00 36.22 3.68
4348 8485 5.277925 CCAATTCCCACAATGTTTTGCTTTC 60.278 40.000 0.00 0.00 36.22 2.62
4349 8486 3.467374 TCCCACAATGTTTTGCTTTCC 57.533 42.857 0.00 0.00 36.22 3.13
4356 8493 4.571984 ACAATGTTTTGCTTTCCTGCTTTC 59.428 37.500 0.00 0.00 36.22 2.62
4360 8497 3.389925 TTTGCTTTCCTGCTTTCCATG 57.610 42.857 0.00 0.00 0.00 3.66
4361 8498 0.604578 TGCTTTCCTGCTTTCCATGC 59.395 50.000 0.00 0.00 0.00 4.06
4362 8499 0.457337 GCTTTCCTGCTTTCCATGCG 60.457 55.000 0.00 0.00 0.00 4.73
4367 8504 1.065273 CTGCTTTCCATGCGGCATC 59.935 57.895 13.53 1.07 34.12 3.91
4373 8510 3.402110 CTTTCCATGCGGCATCTGTATA 58.598 45.455 13.53 0.00 0.00 1.47
4376 8513 5.357742 TTCCATGCGGCATCTGTATATAT 57.642 39.130 13.53 0.00 0.00 0.86
4383 8520 4.033358 GCGGCATCTGTATATATCTTGCAC 59.967 45.833 0.00 0.00 0.00 4.57
4384 8521 4.568359 CGGCATCTGTATATATCTTGCACC 59.432 45.833 0.00 0.00 0.00 5.01
4386 8523 6.176183 GGCATCTGTATATATCTTGCACCTT 58.824 40.000 0.00 0.00 0.00 3.50
4387 8524 6.093219 GGCATCTGTATATATCTTGCACCTTG 59.907 42.308 0.00 0.00 0.00 3.61
4393 8530 7.791029 TGTATATATCTTGCACCTTGAACTCA 58.209 34.615 0.00 0.00 0.00 3.41
4401 8538 6.489700 TCTTGCACCTTGAACTCATAATTTGA 59.510 34.615 0.00 0.00 0.00 2.69
4403 8540 7.230849 TGCACCTTGAACTCATAATTTGAAT 57.769 32.000 0.00 0.00 32.78 2.57
4408 8545 8.306761 ACCTTGAACTCATAATTTGAATTGGAC 58.693 33.333 0.00 0.00 32.78 4.02
4413 8550 8.877864 AACTCATAATTTGAATTGGACCTGTA 57.122 30.769 0.00 0.00 32.78 2.74
4419 8556 3.448093 TGAATTGGACCTGTATTGGCA 57.552 42.857 0.00 0.00 0.00 4.92
4425 8562 1.678101 GGACCTGTATTGGCATGCTTC 59.322 52.381 18.92 1.78 0.00 3.86
4442 8579 6.660722 CATGCTTCTGAGAATTTAGAGATGC 58.339 40.000 0.00 0.00 36.59 3.91
4447 8584 7.644551 GCTTCTGAGAATTTAGAGATGCATTTG 59.355 37.037 0.00 0.00 36.26 2.32
4448 8585 8.571461 TTCTGAGAATTTAGAGATGCATTTGT 57.429 30.769 0.00 0.00 0.00 2.83
4460 8597 5.681880 AGATGCATTTGTTTGCGAATTTTG 58.318 33.333 0.00 0.00 45.77 2.44
4470 8607 4.907188 TTGCGAATTTTGATCATTGCAC 57.093 36.364 8.21 0.00 0.00 4.57
4475 8612 4.624024 CGAATTTTGATCATTGCACTGCTT 59.376 37.500 0.00 0.00 0.00 3.91
4476 8613 5.220154 CGAATTTTGATCATTGCACTGCTTC 60.220 40.000 0.00 0.08 0.00 3.86
4478 8615 0.448990 TGATCATTGCACTGCTTCGC 59.551 50.000 1.98 0.00 0.00 4.70
4479 8616 0.448990 GATCATTGCACTGCTTCGCA 59.551 50.000 1.98 0.00 36.92 5.10
4499 8636 4.025061 CGCAGGATCAATCTGAAAAGCTAG 60.025 45.833 0.00 0.00 34.36 3.42
4500 8637 4.261114 GCAGGATCAATCTGAAAAGCTAGC 60.261 45.833 6.62 6.62 34.36 3.42
4509 8646 4.764172 TCTGAAAAGCTAGCTCCTGATTC 58.236 43.478 19.65 16.53 0.00 2.52
4511 8648 4.764172 TGAAAAGCTAGCTCCTGATTCTC 58.236 43.478 19.65 8.95 0.00 2.87
4514 8651 6.155221 TGAAAAGCTAGCTCCTGATTCTCTAA 59.845 38.462 19.65 0.35 0.00 2.10
4529 8666 2.507058 TCTCTAAGATGGCCTGCATTGT 59.493 45.455 3.32 0.00 0.00 2.71
4535 8672 1.824230 GATGGCCTGCATTGTTTGGTA 59.176 47.619 3.32 0.00 0.00 3.25
4539 8676 1.336795 GCCTGCATTGTTTGGTACACC 60.337 52.381 0.00 0.00 39.29 4.16
4561 8698 4.629634 CCTGTGTTGGTTTTGTTTCTTTCC 59.370 41.667 0.00 0.00 0.00 3.13
4566 8703 2.834549 TGGTTTTGTTTCTTTCCTGCCA 59.165 40.909 0.00 0.00 0.00 4.92
4574 8711 1.609208 TCTTTCCTGCCAAAGAGTGC 58.391 50.000 0.00 0.00 37.45 4.40
4575 8712 1.133823 TCTTTCCTGCCAAAGAGTGCA 60.134 47.619 0.00 0.00 37.45 4.57
4581 8718 2.159282 CCTGCCAAAGAGTGCATCATTC 60.159 50.000 0.00 0.00 36.79 2.67
4584 8721 2.098770 GCCAAAGAGTGCATCATTCCTC 59.901 50.000 0.00 0.00 0.00 3.71
4585 8722 3.349927 CCAAAGAGTGCATCATTCCTCA 58.650 45.455 0.00 0.00 0.00 3.86
4587 8724 2.706339 AGAGTGCATCATTCCTCACC 57.294 50.000 0.00 0.00 0.00 4.02
4595 8732 4.105217 TGCATCATTCCTCACCTTCCATAT 59.895 41.667 0.00 0.00 0.00 1.78
4596 8733 4.458295 GCATCATTCCTCACCTTCCATATG 59.542 45.833 0.00 0.00 0.00 1.78
4597 8734 4.090761 TCATTCCTCACCTTCCATATGC 57.909 45.455 0.00 0.00 0.00 3.14
4598 8735 3.459227 TCATTCCTCACCTTCCATATGCA 59.541 43.478 0.00 0.00 0.00 3.96
4599 8736 3.281727 TTCCTCACCTTCCATATGCAC 57.718 47.619 0.00 0.00 0.00 4.57
4600 8737 1.490490 TCCTCACCTTCCATATGCACC 59.510 52.381 0.00 0.00 0.00 5.01
4601 8738 1.212688 CCTCACCTTCCATATGCACCA 59.787 52.381 0.00 0.00 0.00 4.17
4602 8739 2.357050 CCTCACCTTCCATATGCACCAA 60.357 50.000 0.00 0.00 0.00 3.67
4603 8740 3.355378 CTCACCTTCCATATGCACCAAA 58.645 45.455 0.00 0.00 0.00 3.28
4604 8741 3.355378 TCACCTTCCATATGCACCAAAG 58.645 45.455 0.00 0.00 0.00 2.77
4605 8742 3.010027 TCACCTTCCATATGCACCAAAGA 59.990 43.478 0.00 0.00 0.00 2.52
4606 8743 3.763360 CACCTTCCATATGCACCAAAGAA 59.237 43.478 0.00 0.00 0.00 2.52
4607 8744 4.220382 CACCTTCCATATGCACCAAAGAAA 59.780 41.667 0.00 0.00 0.00 2.52
4608 8745 4.837860 ACCTTCCATATGCACCAAAGAAAA 59.162 37.500 0.00 0.00 0.00 2.29
4609 8746 5.047092 ACCTTCCATATGCACCAAAGAAAAG 60.047 40.000 0.00 0.00 0.00 2.27
4610 8747 5.047092 CCTTCCATATGCACCAAAGAAAAGT 60.047 40.000 0.00 0.00 0.00 2.66
4611 8748 5.643379 TCCATATGCACCAAAGAAAAGTC 57.357 39.130 0.00 0.00 0.00 3.01
4612 8749 5.076182 TCCATATGCACCAAAGAAAAGTCA 58.924 37.500 0.00 0.00 0.00 3.41
4613 8750 5.716228 TCCATATGCACCAAAGAAAAGTCAT 59.284 36.000 0.00 0.00 0.00 3.06
4614 8751 6.211184 TCCATATGCACCAAAGAAAAGTCATT 59.789 34.615 0.00 0.00 0.00 2.57
4615 8752 7.395772 TCCATATGCACCAAAGAAAAGTCATTA 59.604 33.333 0.00 0.00 0.00 1.90
4616 8753 8.199449 CCATATGCACCAAAGAAAAGTCATTAT 58.801 33.333 0.00 0.00 0.00 1.28
4635 8772 9.606631 GTCATTATATTTATAAGAGAGGCCTGG 57.393 37.037 12.00 0.00 32.24 4.45
4636 8773 8.772250 TCATTATATTTATAAGAGAGGCCTGGG 58.228 37.037 12.00 0.00 32.24 4.45
4637 8774 7.510675 TTATATTTATAAGAGAGGCCTGGGG 57.489 40.000 12.00 0.00 0.00 4.96
4638 8775 2.118403 TTATAAGAGAGGCCTGGGGG 57.882 55.000 12.00 0.00 0.00 5.40
4639 8776 0.949582 TATAAGAGAGGCCTGGGGGT 59.050 55.000 12.00 0.00 34.45 4.95
4640 8777 0.695803 ATAAGAGAGGCCTGGGGGTG 60.696 60.000 12.00 0.00 34.45 4.61
4649 8786 3.260100 CTGGGGGTGCCCTGAGTT 61.260 66.667 7.26 0.00 44.66 3.01
4650 8787 1.923395 CTGGGGGTGCCCTGAGTTA 60.923 63.158 7.26 0.00 44.66 2.24
4651 8788 1.464395 TGGGGGTGCCCTGAGTTAA 60.464 57.895 7.26 0.00 44.66 2.01
4652 8789 1.303282 GGGGGTGCCCTGAGTTAAG 59.697 63.158 7.26 0.00 44.66 1.85
4653 8790 1.205460 GGGGGTGCCCTGAGTTAAGA 61.205 60.000 7.26 0.00 44.66 2.10
4654 8791 0.696501 GGGGTGCCCTGAGTTAAGAA 59.303 55.000 7.26 0.00 41.34 2.52
4655 8792 1.340114 GGGGTGCCCTGAGTTAAGAAG 60.340 57.143 7.26 0.00 41.34 2.85
4656 8793 1.628846 GGGTGCCCTGAGTTAAGAAGA 59.371 52.381 0.00 0.00 0.00 2.87
4657 8794 2.355209 GGGTGCCCTGAGTTAAGAAGAG 60.355 54.545 0.00 0.00 0.00 2.85
4658 8795 2.351455 GTGCCCTGAGTTAAGAAGAGC 58.649 52.381 0.00 0.00 0.00 4.09
4659 8796 1.977854 TGCCCTGAGTTAAGAAGAGCA 59.022 47.619 0.00 0.00 0.00 4.26
4660 8797 2.573462 TGCCCTGAGTTAAGAAGAGCAT 59.427 45.455 0.00 0.00 0.00 3.79
4661 8798 2.941720 GCCCTGAGTTAAGAAGAGCATG 59.058 50.000 0.00 0.00 0.00 4.06
4662 8799 3.369892 GCCCTGAGTTAAGAAGAGCATGA 60.370 47.826 0.00 0.00 0.00 3.07
4663 8800 4.836825 CCCTGAGTTAAGAAGAGCATGAA 58.163 43.478 0.00 0.00 0.00 2.57
4664 8801 5.435291 CCCTGAGTTAAGAAGAGCATGAAT 58.565 41.667 0.00 0.00 0.00 2.57
4665 8802 6.586344 CCCTGAGTTAAGAAGAGCATGAATA 58.414 40.000 0.00 0.00 0.00 1.75
4666 8803 7.050377 CCCTGAGTTAAGAAGAGCATGAATAA 58.950 38.462 0.00 0.00 0.00 1.40
4667 8804 7.718753 CCCTGAGTTAAGAAGAGCATGAATAAT 59.281 37.037 0.00 0.00 0.00 1.28
4668 8805 9.118300 CCTGAGTTAAGAAGAGCATGAATAATT 57.882 33.333 0.00 0.00 0.00 1.40
4673 8810 9.230932 GTTAAGAAGAGCATGAATAATTTCTGC 57.769 33.333 0.00 0.00 36.80 4.26
4674 8811 7.400599 AAGAAGAGCATGAATAATTTCTGCA 57.599 32.000 0.00 0.00 37.92 4.41
4675 8812 7.400599 AGAAGAGCATGAATAATTTCTGCAA 57.599 32.000 0.00 0.00 37.92 4.08
4676 8813 8.008513 AGAAGAGCATGAATAATTTCTGCAAT 57.991 30.769 0.00 0.00 37.92 3.56
4677 8814 7.921214 AGAAGAGCATGAATAATTTCTGCAATG 59.079 33.333 0.00 0.00 37.92 2.82
4678 8815 5.983720 AGAGCATGAATAATTTCTGCAATGC 59.016 36.000 0.00 0.00 37.60 3.56
4679 8816 5.914033 AGCATGAATAATTTCTGCAATGCT 58.086 33.333 6.82 8.90 40.38 3.79
4680 8817 7.013942 AGAGCATGAATAATTTCTGCAATGCTA 59.986 33.333 13.50 0.00 42.91 3.49
4681 8818 7.145985 AGCATGAATAATTTCTGCAATGCTAG 58.854 34.615 12.23 2.52 41.95 3.42
4682 8819 6.921857 GCATGAATAATTTCTGCAATGCTAGT 59.078 34.615 6.82 0.00 35.89 2.57
4683 8820 8.077991 GCATGAATAATTTCTGCAATGCTAGTA 58.922 33.333 6.82 0.00 35.89 1.82
4690 8827 8.511604 AATTTCTGCAATGCTAGTATAGTTGT 57.488 30.769 6.82 0.00 41.93 3.32
4691 8828 7.921786 TTTCTGCAATGCTAGTATAGTTGTT 57.078 32.000 6.82 0.00 41.93 2.83
4692 8829 9.613428 ATTTCTGCAATGCTAGTATAGTTGTTA 57.387 29.630 6.82 0.00 41.93 2.41
4693 8830 8.420374 TTCTGCAATGCTAGTATAGTTGTTAC 57.580 34.615 6.82 0.00 41.93 2.50
4694 8831 7.552459 TCTGCAATGCTAGTATAGTTGTTACA 58.448 34.615 6.82 0.00 41.93 2.41
4695 8832 7.706607 TCTGCAATGCTAGTATAGTTGTTACAG 59.293 37.037 6.82 0.00 41.93 2.74
4696 8833 7.552459 TGCAATGCTAGTATAGTTGTTACAGA 58.448 34.615 6.82 0.00 41.93 3.41
4697 8834 7.706607 TGCAATGCTAGTATAGTTGTTACAGAG 59.293 37.037 6.82 0.00 41.93 3.35
4698 8835 7.169982 GCAATGCTAGTATAGTTGTTACAGAGG 59.830 40.741 0.00 0.00 41.93 3.69
4699 8836 8.414003 CAATGCTAGTATAGTTGTTACAGAGGA 58.586 37.037 0.00 0.00 41.93 3.71
4700 8837 8.713708 ATGCTAGTATAGTTGTTACAGAGGAT 57.286 34.615 0.00 0.00 41.93 3.24
4701 8838 8.534954 TGCTAGTATAGTTGTTACAGAGGATT 57.465 34.615 0.00 0.00 41.93 3.01
4702 8839 8.978472 TGCTAGTATAGTTGTTACAGAGGATTT 58.022 33.333 0.00 0.00 41.93 2.17
4703 8840 9.465985 GCTAGTATAGTTGTTACAGAGGATTTC 57.534 37.037 0.00 0.00 41.93 2.17
4706 8843 9.256228 AGTATAGTTGTTACAGAGGATTTCAGA 57.744 33.333 0.00 0.00 0.00 3.27
4709 8846 9.965902 ATAGTTGTTACAGAGGATTTCAGATTT 57.034 29.630 0.00 0.00 0.00 2.17
4711 8848 9.793259 AGTTGTTACAGAGGATTTCAGATTTAA 57.207 29.630 0.00 0.00 0.00 1.52
4718 8855 9.753674 ACAGAGGATTTCAGATTTAATAAACCA 57.246 29.630 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 7.730067 TTACTCAACGATGTTGTAATCTACG 57.270 36.000 9.28 0.00 0.00 3.51
20 21 8.540492 CCATTACTCAACGATGTTGTAATCTAC 58.460 37.037 16.77 0.00 36.34 2.59
34 35 3.191669 TCAATACCGCCATTACTCAACG 58.808 45.455 0.00 0.00 0.00 4.10
44 45 2.098614 ACAATGCATTCAATACCGCCA 58.901 42.857 9.53 0.00 0.00 5.69
45 46 2.462889 CACAATGCATTCAATACCGCC 58.537 47.619 9.53 0.00 0.00 6.13
46 47 2.462889 CCACAATGCATTCAATACCGC 58.537 47.619 9.53 0.00 0.00 5.68
72 73 1.419762 TGCCCTAGGATACGTACCGTA 59.580 52.381 11.48 0.00 46.28 4.02
79 80 1.367840 GGCTGTGCCCTAGGATACG 59.632 63.158 11.48 6.60 44.06 3.06
100 101 2.609747 ACATAGTCGGATGGCCTACAT 58.390 47.619 3.32 0.00 44.18 2.29
101 102 2.082140 ACATAGTCGGATGGCCTACA 57.918 50.000 3.32 0.00 32.49 2.74
113 114 3.678548 GTCGGTCACCAAGAAACATAGTC 59.321 47.826 0.00 0.00 0.00 2.59
142 143 2.496470 ACGAACCCCTAACAGATGAGAC 59.504 50.000 0.00 0.00 0.00 3.36
169 171 4.338379 AAGGAACCAAGTGTCTACAGTC 57.662 45.455 0.00 0.00 0.00 3.51
194 196 4.381079 GCGTCAGATACCAGGGAGATATTC 60.381 50.000 0.00 0.00 0.00 1.75
196 198 3.093057 GCGTCAGATACCAGGGAGATAT 58.907 50.000 0.00 0.00 0.00 1.63
226 234 0.889186 ACAAGTCCCATTGCGACACC 60.889 55.000 4.39 0.00 33.28 4.16
238 246 2.919228 CCAAGGGCTATACACAAGTCC 58.081 52.381 0.00 0.00 39.13 3.85
268 276 4.278170 CCAACCAAGAAATACAGTGCTGAA 59.722 41.667 6.17 0.00 0.00 3.02
273 281 4.853924 AAGCCAACCAAGAAATACAGTG 57.146 40.909 0.00 0.00 0.00 3.66
277 285 4.371855 GCCTAAGCCAACCAAGAAATAC 57.628 45.455 0.00 0.00 0.00 1.89
308 316 1.202651 GGTCAGGTTATACGCATGGCT 60.203 52.381 0.00 0.00 0.00 4.75
314 322 3.488553 GCAAAATGGGTCAGGTTATACGC 60.489 47.826 0.00 0.00 0.00 4.42
315 323 3.066203 GGCAAAATGGGTCAGGTTATACG 59.934 47.826 0.00 0.00 0.00 3.06
316 324 3.383505 GGGCAAAATGGGTCAGGTTATAC 59.616 47.826 0.00 0.00 0.00 1.47
324 355 1.631405 CTGAAGGGCAAAATGGGTCA 58.369 50.000 0.00 0.00 0.00 4.02
343 374 4.201990 CGTCAACTATACAGGAGGTACACC 60.202 50.000 0.00 0.00 40.21 4.16
345 376 3.949754 CCGTCAACTATACAGGAGGTACA 59.050 47.826 0.00 0.00 34.07 2.90
354 394 7.400599 ACTAGATTTGACCGTCAACTATACA 57.599 36.000 13.61 0.00 35.89 2.29
355 395 7.972277 TCAACTAGATTTGACCGTCAACTATAC 59.028 37.037 13.61 4.35 35.89 1.47
387 427 1.740025 GCTTCCCTAGTTGACACATGC 59.260 52.381 0.00 0.00 0.00 4.06
397 437 1.838073 CGGGTGTTGGCTTCCCTAGT 61.838 60.000 0.00 0.00 39.10 2.57
399 439 3.074281 CGGGTGTTGGCTTCCCTA 58.926 61.111 0.00 0.00 39.10 3.53
400 440 4.660938 GCGGGTGTTGGCTTCCCT 62.661 66.667 0.00 0.00 39.10 4.20
421 461 2.105128 GATGACCCACCTCGCTCG 59.895 66.667 0.00 0.00 0.00 5.03
426 466 1.763545 GGAACTAGGATGACCCACCTC 59.236 57.143 0.00 0.00 37.68 3.85
429 469 2.681097 GCAAGGAACTAGGATGACCCAC 60.681 54.545 0.00 0.00 38.49 4.61
430 470 1.559682 GCAAGGAACTAGGATGACCCA 59.440 52.381 0.00 0.00 38.49 4.51
431 471 1.473434 CGCAAGGAACTAGGATGACCC 60.473 57.143 0.00 0.00 38.49 4.46
434 474 0.179111 CGCGCAAGGAACTAGGATGA 60.179 55.000 8.75 0.00 38.49 2.92
440 480 1.083806 CATCAGCGCGCAAGGAACTA 61.084 55.000 35.10 9.09 38.49 2.24
480 520 5.350091 ACAAAAACCACAATGAAAAGAACGG 59.650 36.000 0.00 0.00 0.00 4.44
493 533 8.608844 AATAGAAAACACAAACAAAAACCACA 57.391 26.923 0.00 0.00 0.00 4.17
572 612 8.732531 CACGGTGTATTAGAAAATAAAAAGGGA 58.267 33.333 0.00 0.00 29.41 4.20
586 626 9.834628 ATTAAAAATGTGTTCACGGTGTATTAG 57.165 29.630 8.17 0.00 0.00 1.73
589 629 6.584563 GCATTAAAAATGTGTTCACGGTGTAT 59.415 34.615 8.17 0.00 0.00 2.29
681 735 9.834628 AACACGTTGGATGTGTATTAAAATAAG 57.165 29.630 6.38 0.00 46.74 1.73
684 738 8.573035 AGAAACACGTTGGATGTGTATTAAAAT 58.427 29.630 6.38 0.00 46.74 1.82
699 753 8.879759 AGTTCACCATATATTAGAAACACGTTG 58.120 33.333 0.00 0.00 0.00 4.10
915 984 4.141959 GGAATGAGAGAGAGACCTCCAAAG 60.142 50.000 0.00 0.00 40.30 2.77
922 991 1.036707 CGGGGAATGAGAGAGAGACC 58.963 60.000 0.00 0.00 0.00 3.85
925 994 5.011533 ACATAAATCGGGGAATGAGAGAGAG 59.988 44.000 0.00 0.00 0.00 3.20
926 995 4.901849 ACATAAATCGGGGAATGAGAGAGA 59.098 41.667 0.00 0.00 0.00 3.10
927 996 4.993584 CACATAAATCGGGGAATGAGAGAG 59.006 45.833 0.00 0.00 0.00 3.20
928 997 4.202357 CCACATAAATCGGGGAATGAGAGA 60.202 45.833 0.00 0.00 0.00 3.10
929 998 4.067896 CCACATAAATCGGGGAATGAGAG 58.932 47.826 0.00 0.00 0.00 3.20
930 999 3.747388 GCCACATAAATCGGGGAATGAGA 60.747 47.826 0.00 0.00 0.00 3.27
933 1002 1.613437 GGCCACATAAATCGGGGAATG 59.387 52.381 0.00 0.00 0.00 2.67
936 1005 1.147376 CGGCCACATAAATCGGGGA 59.853 57.895 2.24 0.00 0.00 4.81
940 1009 2.032030 GGACATTCGGCCACATAAATCG 60.032 50.000 2.24 0.00 0.00 3.34
999 1068 1.004745 GGACTCTGGGCATGAAAAGGA 59.995 52.381 0.00 0.00 0.00 3.36
1013 1082 2.224670 CCTAGCTGTATCGGAGGACTCT 60.225 54.545 0.00 0.00 0.00 3.24
1137 1206 2.948720 GCGGCAGAGGAAGGACACT 61.949 63.158 0.00 0.00 0.00 3.55
1139 1208 4.069232 CGCGGCAGAGGAAGGACA 62.069 66.667 0.00 0.00 0.00 4.02
1288 1357 0.528684 GTGGAGAGATGTGTAGCGGC 60.529 60.000 0.00 0.00 0.00 6.53
1294 1363 1.898472 CACTGGAGTGGAGAGATGTGT 59.102 52.381 0.00 0.00 42.10 3.72
1360 1438 0.249868 CCTGTTTGCTGAGTGTCCGA 60.250 55.000 0.00 0.00 0.00 4.55
1375 1453 1.373812 GGGGACTTACGTTGCCTGT 59.626 57.895 0.00 0.00 0.00 4.00
1491 1571 3.260884 ACATACAGGACCAGTACAAGTGG 59.739 47.826 0.00 0.00 44.34 4.00
1594 1819 1.429463 CGAAAGGCTATGTATCGGCC 58.571 55.000 0.00 0.00 45.57 6.13
1667 1893 1.541310 CGAACCCACAGCTAGGACCA 61.541 60.000 5.97 0.00 0.00 4.02
1698 1924 1.228429 CGCCTTGTTTCCCTTCCCA 60.228 57.895 0.00 0.00 0.00 4.37
1711 1937 0.462047 CCCGATTAACAGCTCGCCTT 60.462 55.000 0.00 0.00 33.63 4.35
1723 1949 0.608130 CATCGCCTCCATCCCGATTA 59.392 55.000 0.00 0.00 39.43 1.75
1790 2016 1.052124 AGTTGAGGTTGTCCCACCGA 61.052 55.000 0.00 0.00 42.33 4.69
1800 2026 2.593956 GGAGGCGGGAGTTGAGGTT 61.594 63.158 0.00 0.00 0.00 3.50
1936 2170 2.839629 TGAATTGATCACGCGCAGT 58.160 47.368 5.73 3.19 31.50 4.40
2095 2461 7.259161 ACCTAACACGAGATGAGTAAGAATTC 58.741 38.462 0.00 0.00 0.00 2.17
2165 2538 1.072015 CCAAGAGATCCTCCCTGATGC 59.928 57.143 0.00 0.00 0.00 3.91
2270 2643 2.288763 ACCCAAAACAATTCCATCGCAC 60.289 45.455 0.00 0.00 0.00 5.34
2289 2690 0.732538 GCAGCATTGTAACGCCAACC 60.733 55.000 0.00 0.00 0.00 3.77
2434 2839 2.484264 AGTCTGCGATAGTTGGCAAAAC 59.516 45.455 0.00 0.00 36.06 2.43
2522 2927 2.158682 TCAAGCTTCAGCAGGTTTGGTA 60.159 45.455 0.00 0.00 41.53 3.25
2567 2985 4.567959 GCCAGATTCATGTTATTTGGCAAC 59.432 41.667 25.65 8.91 46.84 4.17
2686 3118 4.318332 GCGAAAACAAAATGCTAAGAGACG 59.682 41.667 0.00 0.00 0.00 4.18
2810 3251 2.163818 TTAGCGCATACCTGGCATAC 57.836 50.000 11.47 0.00 0.00 2.39
2944 3393 5.104318 GGAAGGAGATCAGTCTTGGGTAAAT 60.104 44.000 0.00 0.00 33.97 1.40
2949 3398 1.488393 GGGAAGGAGATCAGTCTTGGG 59.512 57.143 0.00 0.00 33.97 4.12
2992 6621 4.026475 CGAAAGATAAGAACCGAGATGTGC 60.026 45.833 0.00 0.00 0.00 4.57
3002 6631 9.107367 CAAAAGTCAATGACGAAAGATAAGAAC 57.893 33.333 7.83 0.00 37.67 3.01
3037 6666 4.201851 CGATATCACTTGAACTGCAAAGGG 60.202 45.833 3.12 0.00 35.74 3.95
3399 7049 4.151867 GGTTTACAAGCTAACGGTTCTCTG 59.848 45.833 0.00 0.00 0.00 3.35
3401 7051 4.151867 CAGGTTTACAAGCTAACGGTTCTC 59.848 45.833 0.00 0.00 37.49 2.87
3432 7083 3.704566 TGCTACTTCCCAATATGTCGACT 59.295 43.478 17.92 4.95 0.00 4.18
3549 7666 5.550403 ACTTCCAGTAACTATTTCCCCAAGA 59.450 40.000 0.00 0.00 0.00 3.02
3554 7671 6.754702 GGAAACTTCCAGTAACTATTTCCC 57.245 41.667 3.50 0.00 46.76 3.97
3605 7727 7.504403 CAATCTCCAGGACTGATAGTTAACAT 58.496 38.462 8.61 0.00 0.00 2.71
3607 7729 5.755861 GCAATCTCCAGGACTGATAGTTAAC 59.244 44.000 0.00 0.00 0.00 2.01
3661 7791 8.482852 AAATCTTATATTTGTGAATGGAGGGG 57.517 34.615 0.00 0.00 0.00 4.79
3706 7840 5.744345 CACTCATTTCAGTCCGTATGTAGTC 59.256 44.000 0.00 0.00 0.00 2.59
3708 7842 5.891451 TCACTCATTTCAGTCCGTATGTAG 58.109 41.667 0.00 0.00 0.00 2.74
3721 7855 8.682128 TTTTACTGTGTTTGTTCACTCATTTC 57.318 30.769 0.00 0.00 38.90 2.17
3831 7965 3.438216 TGAGATCAATGAAAGGTGCCA 57.562 42.857 0.00 0.00 0.00 4.92
3834 7968 3.730061 GCGCTTGAGATCAATGAAAGGTG 60.730 47.826 0.00 0.00 35.02 4.00
3835 7969 2.421424 GCGCTTGAGATCAATGAAAGGT 59.579 45.455 0.00 0.00 35.02 3.50
3855 7989 7.587757 CACTGTAAAATCTCAGTTGTAACTTGC 59.412 37.037 0.00 0.00 42.05 4.01
3858 7992 8.732746 AACACTGTAAAATCTCAGTTGTAACT 57.267 30.769 0.00 0.00 42.05 2.24
3865 7999 7.307989 CGATTTGGAACACTGTAAAATCTCAGT 60.308 37.037 15.79 0.00 44.32 3.41
3866 8000 7.017645 CGATTTGGAACACTGTAAAATCTCAG 58.982 38.462 15.79 0.00 39.29 3.35
3869 8005 6.934645 TCTCGATTTGGAACACTGTAAAATCT 59.065 34.615 15.79 0.00 39.29 2.40
3882 8018 5.359194 AGCTAGGAAATCTCGATTTGGAA 57.641 39.130 9.43 0.00 40.77 3.53
3907 8043 3.431346 GCTGATCACTGTCCTATGCTTCA 60.431 47.826 0.00 0.00 0.00 3.02
3908 8044 3.129871 GCTGATCACTGTCCTATGCTTC 58.870 50.000 0.00 0.00 0.00 3.86
3928 8064 4.313282 TGTAATAGCAGATCTCATGCAGC 58.687 43.478 8.02 0.61 46.31 5.25
3931 8067 6.857777 AGTTTGTAATAGCAGATCTCATGC 57.142 37.500 0.00 0.00 44.18 4.06
3960 8096 1.559682 TCAGCTCCCAATGGTTACTCC 59.440 52.381 0.00 0.00 0.00 3.85
3964 8100 2.912956 ACTCTTCAGCTCCCAATGGTTA 59.087 45.455 0.00 0.00 0.00 2.85
3966 8102 1.366319 ACTCTTCAGCTCCCAATGGT 58.634 50.000 0.00 0.00 0.00 3.55
3976 8112 2.033049 CAGCCAATGCATACTCTTCAGC 59.967 50.000 0.00 0.00 41.13 4.26
3977 8113 3.965292 CAGCCAATGCATACTCTTCAG 57.035 47.619 0.00 0.00 41.13 3.02
4002 8138 2.729156 GCTTAACAGGAAAGCGCATGTC 60.729 50.000 11.47 2.90 39.92 3.06
4003 8139 1.200020 GCTTAACAGGAAAGCGCATGT 59.800 47.619 11.47 3.06 39.92 3.21
4004 8140 1.900237 GCTTAACAGGAAAGCGCATG 58.100 50.000 11.47 2.35 39.92 4.06
4017 8153 2.808906 ACATTCCCAGGGAGCTTAAC 57.191 50.000 8.67 0.00 31.21 2.01
4020 8156 1.417890 CGATACATTCCCAGGGAGCTT 59.582 52.381 8.67 0.00 31.21 3.74
4055 8191 3.701205 TCTTTGCTGCCACTAATCAGA 57.299 42.857 0.00 0.00 32.26 3.27
4060 8196 2.276732 AGCTTCTTTGCTGCCACTAA 57.723 45.000 0.00 0.00 42.33 2.24
4062 8198 1.818642 CTAGCTTCTTTGCTGCCACT 58.181 50.000 0.00 0.00 43.87 4.00
4065 8201 2.029838 TAGCTAGCTTCTTTGCTGCC 57.970 50.000 24.88 0.00 43.87 4.85
4067 8203 6.917217 ATTACTTAGCTAGCTTCTTTGCTG 57.083 37.500 24.88 6.94 43.87 4.41
4068 8204 6.540551 GGAATTACTTAGCTAGCTTCTTTGCT 59.459 38.462 24.88 3.27 46.11 3.91
4077 8213 6.428465 GGGAAATCAGGAATTACTTAGCTAGC 59.572 42.308 6.62 6.62 0.00 3.42
4080 8216 6.327386 TGGGAAATCAGGAATTACTTAGCT 57.673 37.500 0.00 0.00 0.00 3.32
4158 8295 5.932303 TGAGGCTACATTTCTTACAGACAAC 59.068 40.000 0.00 0.00 0.00 3.32
4161 8298 5.725362 ACTGAGGCTACATTTCTTACAGAC 58.275 41.667 0.00 0.00 0.00 3.51
4174 8311 6.147985 GCTAAATTGGCTATAACTGAGGCTAC 59.852 42.308 0.00 0.00 40.08 3.58
4187 8324 8.526978 CAGATCAGATAGTAGCTAAATTGGCTA 58.473 37.037 6.97 6.97 40.74 3.93
4189 8326 6.091986 GCAGATCAGATAGTAGCTAAATTGGC 59.908 42.308 0.00 0.00 0.00 4.52
4194 8331 7.175816 CAGGTAGCAGATCAGATAGTAGCTAAA 59.824 40.741 0.00 0.00 35.21 1.85
4195 8332 6.657117 CAGGTAGCAGATCAGATAGTAGCTAA 59.343 42.308 0.00 0.00 35.21 3.09
4196 8333 6.013293 TCAGGTAGCAGATCAGATAGTAGCTA 60.013 42.308 0.00 0.00 32.49 3.32
4201 8338 5.301551 CACTTCAGGTAGCAGATCAGATAGT 59.698 44.000 0.00 0.00 0.00 2.12
4206 8343 2.168106 AGCACTTCAGGTAGCAGATCAG 59.832 50.000 0.00 0.00 0.00 2.90
4207 8344 2.167281 GAGCACTTCAGGTAGCAGATCA 59.833 50.000 0.00 0.00 0.00 2.92
4210 8347 1.930251 AGAGCACTTCAGGTAGCAGA 58.070 50.000 0.00 0.00 0.00 4.26
4211 8348 2.344950 CAAGAGCACTTCAGGTAGCAG 58.655 52.381 0.00 0.00 33.70 4.24
4241 8378 1.376037 CAGGTTGACTCCCCGCTTC 60.376 63.158 0.00 0.00 0.00 3.86
4245 8382 2.084546 GAAAATCAGGTTGACTCCCCG 58.915 52.381 0.00 0.00 0.00 5.73
4247 8384 3.084786 CTGGAAAATCAGGTTGACTCCC 58.915 50.000 0.00 0.00 0.00 4.30
4258 8395 2.294233 GTGCACTTGCTCTGGAAAATCA 59.706 45.455 10.32 0.00 42.66 2.57
4260 8397 2.035066 GTGTGCACTTGCTCTGGAAAAT 59.965 45.455 19.41 0.00 42.66 1.82
4268 8405 0.815213 TGAGGTGTGTGCACTTGCTC 60.815 55.000 19.41 8.93 44.65 4.26
4276 8413 1.067516 ACAGCAAATTGAGGTGTGTGC 59.932 47.619 13.28 1.40 45.05 4.57
4284 8421 5.341462 CGAAGATGAACAACAGCAAATTGAG 59.659 40.000 0.00 0.00 37.37 3.02
4303 8440 3.311871 GGCGTACTCATCTACTTCGAAGA 59.688 47.826 31.08 10.16 0.00 2.87
4308 8445 4.745620 GGAATTGGCGTACTCATCTACTTC 59.254 45.833 0.00 0.00 0.00 3.01
4318 8455 2.091541 CATTGTGGGAATTGGCGTACT 58.908 47.619 0.00 0.00 0.00 2.73
4319 8456 1.816224 ACATTGTGGGAATTGGCGTAC 59.184 47.619 0.00 0.00 0.00 3.67
4323 8460 2.226200 GCAAAACATTGTGGGAATTGGC 59.774 45.455 0.00 0.00 0.00 4.52
4331 8468 2.545106 GCAGGAAAGCAAAACATTGTGG 59.455 45.455 0.00 0.00 0.00 4.17
4332 8469 3.460103 AGCAGGAAAGCAAAACATTGTG 58.540 40.909 0.00 0.00 36.85 3.33
4344 8481 0.171903 CCGCATGGAAAGCAGGAAAG 59.828 55.000 0.00 0.00 37.49 2.62
4348 8485 2.345880 GATGCCGCATGGAAAGCAGG 62.346 60.000 11.49 0.00 38.89 4.85
4349 8486 1.065273 GATGCCGCATGGAAAGCAG 59.935 57.895 11.49 0.00 38.89 4.24
4356 8493 4.953667 AGATATATACAGATGCCGCATGG 58.046 43.478 11.49 5.33 38.77 3.66
4360 8497 4.033358 GTGCAAGATATATACAGATGCCGC 59.967 45.833 0.00 0.00 0.00 6.53
4361 8498 4.568359 GGTGCAAGATATATACAGATGCCG 59.432 45.833 0.00 0.00 0.00 5.69
4362 8499 5.738909 AGGTGCAAGATATATACAGATGCC 58.261 41.667 0.00 0.00 0.00 4.40
4367 8504 7.928167 TGAGTTCAAGGTGCAAGATATATACAG 59.072 37.037 0.00 0.00 0.00 2.74
4373 8510 8.757982 AATTATGAGTTCAAGGTGCAAGATAT 57.242 30.769 0.00 0.00 0.00 1.63
4376 8513 6.489700 TCAAATTATGAGTTCAAGGTGCAAGA 59.510 34.615 0.00 0.00 33.04 3.02
4383 8520 7.761249 GGTCCAATTCAAATTATGAGTTCAAGG 59.239 37.037 0.00 0.00 39.77 3.61
4384 8521 8.526147 AGGTCCAATTCAAATTATGAGTTCAAG 58.474 33.333 0.00 0.00 39.77 3.02
4386 8523 7.451255 ACAGGTCCAATTCAAATTATGAGTTCA 59.549 33.333 0.00 0.00 39.77 3.18
4387 8524 7.830739 ACAGGTCCAATTCAAATTATGAGTTC 58.169 34.615 0.00 0.00 39.77 3.01
4393 8530 7.125507 TGCCAATACAGGTCCAATTCAAATTAT 59.874 33.333 0.00 0.00 0.00 1.28
4396 8533 4.776837 TGCCAATACAGGTCCAATTCAAAT 59.223 37.500 0.00 0.00 0.00 2.32
4401 8538 2.431782 GCATGCCAATACAGGTCCAATT 59.568 45.455 6.36 0.00 0.00 2.32
4403 8540 1.005805 AGCATGCCAATACAGGTCCAA 59.994 47.619 15.66 0.00 0.00 3.53
4408 8545 2.617308 CTCAGAAGCATGCCAATACAGG 59.383 50.000 15.66 0.00 0.00 4.00
4413 8550 5.889853 TCTAAATTCTCAGAAGCATGCCAAT 59.110 36.000 15.66 0.00 0.00 3.16
4419 8556 6.354938 TGCATCTCTAAATTCTCAGAAGCAT 58.645 36.000 0.00 0.00 0.00 3.79
4425 8562 9.073368 CAAACAAATGCATCTCTAAATTCTCAG 57.927 33.333 0.00 0.00 0.00 3.35
4442 8579 7.201199 GCAATGATCAAAATTCGCAAACAAATG 60.201 33.333 0.00 0.00 0.00 2.32
4447 8584 5.074791 GTGCAATGATCAAAATTCGCAAAC 58.925 37.500 0.00 0.00 0.00 2.93
4448 8585 4.989797 AGTGCAATGATCAAAATTCGCAAA 59.010 33.333 0.00 0.00 0.00 3.68
4475 8612 2.679837 GCTTTTCAGATTGATCCTGCGA 59.320 45.455 0.00 0.00 0.00 5.10
4476 8613 2.681848 AGCTTTTCAGATTGATCCTGCG 59.318 45.455 0.00 0.00 0.00 5.18
4478 8615 5.124645 AGCTAGCTTTTCAGATTGATCCTG 58.875 41.667 12.68 0.00 0.00 3.86
4479 8616 5.367302 GAGCTAGCTTTTCAGATTGATCCT 58.633 41.667 20.42 0.00 0.00 3.24
4480 8617 4.514816 GGAGCTAGCTTTTCAGATTGATCC 59.485 45.833 20.42 6.87 39.08 3.36
4499 8636 3.556843 GGCCATCTTAGAGAATCAGGAGC 60.557 52.174 0.00 0.00 37.82 4.70
4500 8637 3.903090 AGGCCATCTTAGAGAATCAGGAG 59.097 47.826 5.01 0.00 37.82 3.69
4509 8646 2.928334 ACAATGCAGGCCATCTTAGAG 58.072 47.619 5.01 0.00 31.43 2.43
4511 8648 3.429822 CCAAACAATGCAGGCCATCTTAG 60.430 47.826 5.01 0.00 31.43 2.18
4514 8651 0.899720 CCAAACAATGCAGGCCATCT 59.100 50.000 5.01 0.00 31.43 2.90
4529 8666 2.810870 ACCAACACAGGTGTACCAAA 57.189 45.000 5.36 0.00 44.13 3.28
4539 8676 5.348451 CAGGAAAGAAACAAAACCAACACAG 59.652 40.000 0.00 0.00 0.00 3.66
4561 8698 2.159282 GGAATGATGCACTCTTTGGCAG 60.159 50.000 0.00 0.00 44.24 4.85
4566 8703 3.009916 AGGTGAGGAATGATGCACTCTTT 59.990 43.478 0.00 0.00 0.00 2.52
4574 8711 4.458295 GCATATGGAAGGTGAGGAATGATG 59.542 45.833 4.56 0.00 0.00 3.07
4575 8712 4.105217 TGCATATGGAAGGTGAGGAATGAT 59.895 41.667 4.56 0.00 0.00 2.45
4581 8718 1.212688 TGGTGCATATGGAAGGTGAGG 59.787 52.381 4.56 0.00 0.00 3.86
4584 8721 3.355378 TCTTTGGTGCATATGGAAGGTG 58.645 45.455 4.56 0.00 0.00 4.00
4585 8722 3.737559 TCTTTGGTGCATATGGAAGGT 57.262 42.857 4.56 0.00 0.00 3.50
4587 8724 6.029346 ACTTTTCTTTGGTGCATATGGAAG 57.971 37.500 4.56 0.00 0.00 3.46
4609 8746 9.606631 CCAGGCCTCTCTTATAAATATAATGAC 57.393 37.037 0.00 0.00 0.00 3.06
4610 8747 8.772250 CCCAGGCCTCTCTTATAAATATAATGA 58.228 37.037 0.00 0.00 0.00 2.57
4611 8748 7.995488 CCCCAGGCCTCTCTTATAAATATAATG 59.005 40.741 0.00 0.00 0.00 1.90
4612 8749 7.129504 CCCCCAGGCCTCTCTTATAAATATAAT 59.870 40.741 0.00 0.00 0.00 1.28
4613 8750 6.447084 CCCCCAGGCCTCTCTTATAAATATAA 59.553 42.308 0.00 0.00 0.00 0.98
4614 8751 5.970640 CCCCCAGGCCTCTCTTATAAATATA 59.029 44.000 0.00 0.00 0.00 0.86
4615 8752 4.790790 CCCCCAGGCCTCTCTTATAAATAT 59.209 45.833 0.00 0.00 0.00 1.28
4616 8753 4.175962 CCCCCAGGCCTCTCTTATAAATA 58.824 47.826 0.00 0.00 0.00 1.40
4617 8754 2.989571 CCCCCAGGCCTCTCTTATAAAT 59.010 50.000 0.00 0.00 0.00 1.40
4618 8755 2.294263 ACCCCCAGGCCTCTCTTATAAA 60.294 50.000 0.00 0.00 36.11 1.40
4619 8756 1.297141 ACCCCCAGGCCTCTCTTATAA 59.703 52.381 0.00 0.00 36.11 0.98
4620 8757 0.949582 ACCCCCAGGCCTCTCTTATA 59.050 55.000 0.00 0.00 36.11 0.98
4621 8758 0.695803 CACCCCCAGGCCTCTCTTAT 60.696 60.000 0.00 0.00 36.11 1.73
4622 8759 1.306997 CACCCCCAGGCCTCTCTTA 60.307 63.158 0.00 0.00 36.11 2.10
4623 8760 2.612115 CACCCCCAGGCCTCTCTT 60.612 66.667 0.00 0.00 36.11 2.85
4638 8775 2.289694 TGCTCTTCTTAACTCAGGGCAC 60.290 50.000 0.00 0.00 0.00 5.01
4639 8776 1.977854 TGCTCTTCTTAACTCAGGGCA 59.022 47.619 0.00 0.00 0.00 5.36
4640 8777 2.770164 TGCTCTTCTTAACTCAGGGC 57.230 50.000 0.00 0.00 0.00 5.19
4641 8778 4.478206 TCATGCTCTTCTTAACTCAGGG 57.522 45.455 0.00 0.00 0.00 4.45
4642 8779 8.674263 ATTATTCATGCTCTTCTTAACTCAGG 57.326 34.615 0.00 0.00 0.00 3.86
4647 8784 9.230932 GCAGAAATTATTCATGCTCTTCTTAAC 57.769 33.333 6.97 0.00 38.06 2.01
4648 8785 8.959548 TGCAGAAATTATTCATGCTCTTCTTAA 58.040 29.630 13.08 0.00 38.94 1.85
4649 8786 8.510243 TGCAGAAATTATTCATGCTCTTCTTA 57.490 30.769 13.08 0.00 38.94 2.10
4650 8787 7.400599 TGCAGAAATTATTCATGCTCTTCTT 57.599 32.000 13.08 0.00 38.94 2.52
4651 8788 7.400599 TTGCAGAAATTATTCATGCTCTTCT 57.599 32.000 13.08 0.00 38.94 2.85
4652 8789 7.306632 GCATTGCAGAAATTATTCATGCTCTTC 60.307 37.037 3.15 0.00 37.83 2.87
4653 8790 6.479001 GCATTGCAGAAATTATTCATGCTCTT 59.521 34.615 3.15 0.05 37.83 2.85
4654 8791 5.983720 GCATTGCAGAAATTATTCATGCTCT 59.016 36.000 3.15 0.00 37.83 4.09
4655 8792 5.983720 AGCATTGCAGAAATTATTCATGCTC 59.016 36.000 11.91 3.72 42.94 4.26
4656 8793 5.914033 AGCATTGCAGAAATTATTCATGCT 58.086 33.333 11.91 8.90 42.29 3.79
4657 8794 6.921857 ACTAGCATTGCAGAAATTATTCATGC 59.078 34.615 11.91 4.85 39.61 4.06
4664 8801 9.613428 ACAACTATACTAGCATTGCAGAAATTA 57.387 29.630 11.91 0.00 0.00 1.40
4665 8802 8.511604 ACAACTATACTAGCATTGCAGAAATT 57.488 30.769 11.91 0.00 0.00 1.82
4666 8803 8.511604 AACAACTATACTAGCATTGCAGAAAT 57.488 30.769 11.91 8.13 0.00 2.17
4667 8804 7.921786 AACAACTATACTAGCATTGCAGAAA 57.078 32.000 11.91 1.90 0.00 2.52
4668 8805 8.038351 TGTAACAACTATACTAGCATTGCAGAA 58.962 33.333 11.91 0.00 0.00 3.02
4669 8806 7.552459 TGTAACAACTATACTAGCATTGCAGA 58.448 34.615 11.91 0.00 0.00 4.26
4670 8807 7.706607 TCTGTAACAACTATACTAGCATTGCAG 59.293 37.037 11.91 8.74 33.42 4.41
4671 8808 7.552459 TCTGTAACAACTATACTAGCATTGCA 58.448 34.615 11.91 0.00 0.00 4.08
4672 8809 7.169982 CCTCTGTAACAACTATACTAGCATTGC 59.830 40.741 0.00 0.00 0.00 3.56
4673 8810 8.414003 TCCTCTGTAACAACTATACTAGCATTG 58.586 37.037 0.00 0.00 0.00 2.82
4674 8811 8.534954 TCCTCTGTAACAACTATACTAGCATT 57.465 34.615 0.00 0.00 0.00 3.56
4675 8812 8.713708 ATCCTCTGTAACAACTATACTAGCAT 57.286 34.615 0.00 0.00 0.00 3.79
4676 8813 8.534954 AATCCTCTGTAACAACTATACTAGCA 57.465 34.615 0.00 0.00 0.00 3.49
4677 8814 9.465985 GAAATCCTCTGTAACAACTATACTAGC 57.534 37.037 0.00 0.00 0.00 3.42
4680 8817 9.256228 TCTGAAATCCTCTGTAACAACTATACT 57.744 33.333 0.00 0.00 0.00 2.12
4683 8820 9.965902 AAATCTGAAATCCTCTGTAACAACTAT 57.034 29.630 0.00 0.00 0.00 2.12
4685 8822 9.793259 TTAAATCTGAAATCCTCTGTAACAACT 57.207 29.630 0.00 0.00 0.00 3.16
4692 8829 9.753674 TGGTTTATTAAATCTGAAATCCTCTGT 57.246 29.630 1.38 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.