Multiple sequence alignment - TraesCS1A01G213400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G213400 chr1A 100.000 6093 0 0 1 6093 376675433 376669341 0.000000e+00 11252
1 TraesCS1A01G213400 chr1D 94.636 3039 106 30 806 3827 301951821 301948823 0.000000e+00 4656
2 TraesCS1A01G213400 chr1D 89.184 1017 44 21 4365 5328 301948057 301947054 0.000000e+00 1208
3 TraesCS1A01G213400 chr1D 95.730 562 16 5 3825 4381 301948630 301948072 0.000000e+00 898
4 TraesCS1A01G213400 chr1D 88.313 753 56 12 5335 6084 301946976 301946253 0.000000e+00 874
5 TraesCS1A01G213400 chr1D 92.617 149 7 4 71 218 301954832 301954687 1.720000e-50 211
6 TraesCS1A01G213400 chr1D 97.468 79 1 1 274 351 5290532 5290454 3.830000e-27 134
7 TraesCS1A01G213400 chr1D 96.203 79 2 1 274 351 7883590 7883668 1.780000e-25 128
8 TraesCS1A01G213400 chr1B 94.442 2645 99 27 1202 3827 407548021 407545406 0.000000e+00 4026
9 TraesCS1A01G213400 chr1B 90.273 843 46 6 4365 5202 407544801 407543990 0.000000e+00 1070
10 TraesCS1A01G213400 chr1B 95.552 562 18 6 3825 4381 407545375 407544816 0.000000e+00 893
11 TraesCS1A01G213400 chr1B 87.824 772 55 23 5335 6093 407543787 407543042 0.000000e+00 869
12 TraesCS1A01G213400 chr1B 80.693 808 103 24 347 1142 407548787 407548021 4.090000e-161 579
13 TraesCS1A01G213400 chr1B 89.809 157 10 3 93 249 407548962 407548812 4.820000e-46 196
14 TraesCS1A01G213400 chr5B 86.059 373 30 10 5455 5823 36613544 36613190 1.240000e-101 381
15 TraesCS1A01G213400 chr5B 82.493 377 39 18 5452 5823 36798492 36798846 7.670000e-79 305
16 TraesCS1A01G213400 chr5B 82.493 377 39 17 5452 5823 36829267 36829621 7.670000e-79 305
17 TraesCS1A01G213400 chr5B 91.209 91 5 3 275 363 629793430 629793341 2.980000e-23 121
18 TraesCS1A01G213400 chr5B 86.792 106 11 3 260 363 626724018 626723914 1.390000e-21 115
19 TraesCS1A01G213400 chr5A 84.677 372 52 5 5452 5823 30558512 30558878 3.470000e-97 366
20 TraesCS1A01G213400 chr5A 85.274 292 24 7 5533 5823 30391171 30390898 3.600000e-72 283
21 TraesCS1A01G213400 chr5A 83.392 283 35 7 5444 5722 30559669 30559943 1.010000e-62 252
22 TraesCS1A01G213400 chr5A 88.000 125 15 0 3172 3296 621546088 621545964 1.370000e-31 148
23 TraesCS1A01G213400 chrUn 82.620 374 38 18 5455 5823 65829695 65829344 7.670000e-79 305
24 TraesCS1A01G213400 chrUn 96.154 78 3 0 274 351 281657554 281657631 1.780000e-25 128
25 TraesCS1A01G213400 chrUn 96.154 78 3 0 274 351 351207221 351207144 1.780000e-25 128
26 TraesCS1A01G213400 chr5D 86.411 287 20 8 5533 5818 42066110 42066378 4.620000e-76 296
27 TraesCS1A01G213400 chr5D 78.667 300 44 12 2812 3096 497772310 497772016 1.350000e-41 182
28 TraesCS1A01G213400 chr3A 83.333 294 25 16 5557 5841 53335515 53335237 3.650000e-62 250
29 TraesCS1A01G213400 chr3D 84.328 268 22 10 5557 5819 42368061 42368313 1.700000e-60 244
30 TraesCS1A01G213400 chr3B 97.468 79 0 2 274 351 186085930 186085853 3.830000e-27 134
31 TraesCS1A01G213400 chr3B 96.203 79 1 2 273 351 176855583 176855659 1.780000e-25 128
32 TraesCS1A01G213400 chr7B 96.296 81 0 3 273 351 267256259 267256180 4.960000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G213400 chr1A 376669341 376675433 6092 True 11252.000000 11252 100.0000 1 6093 1 chr1A.!!$R1 6092
1 TraesCS1A01G213400 chr1D 301946253 301954832 8579 True 1569.400000 4656 92.0960 71 6084 5 chr1D.!!$R2 6013
2 TraesCS1A01G213400 chr1B 407543042 407548962 5920 True 1272.166667 4026 89.7655 93 6093 6 chr1B.!!$R1 6000
3 TraesCS1A01G213400 chr5A 30558512 30559943 1431 False 309.000000 366 84.0345 5444 5823 2 chr5A.!!$F1 379

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
331 347 0.027586 GAACGATGCATACGGCCAAC 59.972 55.0 18.34 0.0 43.89 3.77 F
865 3327 0.179134 CCGGTTTAGGAGTCGAGCAG 60.179 60.0 0.00 0.0 0.00 4.24 F
1330 3816 0.321830 TCCCCCGTTGATTTCGGTTC 60.322 55.0 3.78 0.0 45.63 3.62 F
1793 4286 0.850217 GGTTTTTGTTTTCGGCTCGC 59.150 50.0 0.00 0.0 0.00 5.03 F
2245 4759 1.741028 TCAGGTTCATGAGGGGTTCA 58.259 50.0 0.00 0.0 40.85 3.18 F
3134 5648 0.373716 GCATTCTTGCCCGTAAGACG 59.626 55.0 0.00 0.0 43.38 4.18 F
4810 7589 0.034896 AACGTACTGGGTTGGCAGAG 59.965 55.0 0.00 0.0 0.00 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1662 4148 0.592754 CGACAGTAGGAAGCTAGCGC 60.593 60.000 9.55 0.0 0.0 5.92 R
1771 4262 1.849829 GAGCCGAAAACAAAAACCACG 59.150 47.619 0.00 0.0 0.0 4.94 R
2245 4759 2.102588 CCTACGGTCCGGATTCATTCTT 59.897 50.000 17.28 0.0 0.0 2.52 R
3134 5648 4.522789 ACATGGTCAAAATGTTACTCCCAC 59.477 41.667 0.00 0.0 34.6 4.61 R
4197 6909 0.936297 GCACTGCAGCAAAACTTCCG 60.936 55.000 15.27 0.0 0.0 4.30 R
4934 7724 2.483877 CGCTGCTCTTTAACATCAACCA 59.516 45.455 0.00 0.0 0.0 3.67 R
5731 8657 0.107459 GTTCTGAGCCCCCTGTGATC 60.107 60.000 0.00 0.0 0.0 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.530269 TTATTAACTTCAAAACGGACTCTCTC 57.470 34.615 0.00 0.00 0.00 3.20
27 28 4.674281 AACTTCAAAACGGACTCTCTCT 57.326 40.909 0.00 0.00 0.00 3.10
28 29 4.245845 ACTTCAAAACGGACTCTCTCTC 57.754 45.455 0.00 0.00 0.00 3.20
29 30 3.892588 ACTTCAAAACGGACTCTCTCTCT 59.107 43.478 0.00 0.00 0.00 3.10
30 31 4.022676 ACTTCAAAACGGACTCTCTCTCTC 60.023 45.833 0.00 0.00 0.00 3.20
31 32 3.757270 TCAAAACGGACTCTCTCTCTCT 58.243 45.455 0.00 0.00 0.00 3.10
32 33 3.754323 TCAAAACGGACTCTCTCTCTCTC 59.246 47.826 0.00 0.00 0.00 3.20
33 34 3.713826 AAACGGACTCTCTCTCTCTCT 57.286 47.619 0.00 0.00 0.00 3.10
34 35 2.981859 ACGGACTCTCTCTCTCTCTC 57.018 55.000 0.00 0.00 0.00 3.20
35 36 2.467880 ACGGACTCTCTCTCTCTCTCT 58.532 52.381 0.00 0.00 0.00 3.10
36 37 2.431057 ACGGACTCTCTCTCTCTCTCTC 59.569 54.545 0.00 0.00 0.00 3.20
37 38 2.695666 CGGACTCTCTCTCTCTCTCTCT 59.304 54.545 0.00 0.00 0.00 3.10
38 39 3.243569 CGGACTCTCTCTCTCTCTCTCTC 60.244 56.522 0.00 0.00 0.00 3.20
39 40 3.964031 GGACTCTCTCTCTCTCTCTCTCT 59.036 52.174 0.00 0.00 0.00 3.10
40 41 4.038642 GGACTCTCTCTCTCTCTCTCTCTC 59.961 54.167 0.00 0.00 0.00 3.20
41 42 4.877773 ACTCTCTCTCTCTCTCTCTCTCT 58.122 47.826 0.00 0.00 0.00 3.10
42 43 4.892934 ACTCTCTCTCTCTCTCTCTCTCTC 59.107 50.000 0.00 0.00 0.00 3.20
43 44 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
44 45 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
45 46 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
46 47 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
47 48 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
48 49 6.101881 TCTCTCTCTCTCTCTCTCTCTCTCTA 59.898 46.154 0.00 0.00 0.00 2.43
49 50 6.673583 TCTCTCTCTCTCTCTCTCTCTCTAA 58.326 44.000 0.00 0.00 0.00 2.10
50 51 6.547880 TCTCTCTCTCTCTCTCTCTCTCTAAC 59.452 46.154 0.00 0.00 0.00 2.34
51 52 6.194967 TCTCTCTCTCTCTCTCTCTCTAACA 58.805 44.000 0.00 0.00 0.00 2.41
52 53 6.096987 TCTCTCTCTCTCTCTCTCTCTAACAC 59.903 46.154 0.00 0.00 0.00 3.32
53 54 5.719563 TCTCTCTCTCTCTCTCTCTAACACA 59.280 44.000 0.00 0.00 0.00 3.72
54 55 5.730550 TCTCTCTCTCTCTCTCTAACACAC 58.269 45.833 0.00 0.00 0.00 3.82
55 56 5.247337 TCTCTCTCTCTCTCTCTAACACACA 59.753 44.000 0.00 0.00 0.00 3.72
56 57 5.242434 TCTCTCTCTCTCTCTAACACACAC 58.758 45.833 0.00 0.00 0.00 3.82
57 58 4.974399 TCTCTCTCTCTCTAACACACACA 58.026 43.478 0.00 0.00 0.00 3.72
58 59 4.757657 TCTCTCTCTCTCTAACACACACAC 59.242 45.833 0.00 0.00 0.00 3.82
59 60 4.461198 TCTCTCTCTCTAACACACACACA 58.539 43.478 0.00 0.00 0.00 3.72
60 61 4.276183 TCTCTCTCTCTAACACACACACAC 59.724 45.833 0.00 0.00 0.00 3.82
61 62 3.951680 TCTCTCTCTAACACACACACACA 59.048 43.478 0.00 0.00 0.00 3.72
62 63 4.041740 TCTCTCTAACACACACACACAC 57.958 45.455 0.00 0.00 0.00 3.82
63 64 3.445805 TCTCTCTAACACACACACACACA 59.554 43.478 0.00 0.00 0.00 3.72
64 65 3.517602 TCTCTAACACACACACACACAC 58.482 45.455 0.00 0.00 0.00 3.82
65 66 3.056465 TCTCTAACACACACACACACACA 60.056 43.478 0.00 0.00 0.00 3.72
66 67 3.867857 TCTAACACACACACACACACAT 58.132 40.909 0.00 0.00 0.00 3.21
67 68 5.012328 TCTAACACACACACACACACATA 57.988 39.130 0.00 0.00 0.00 2.29
68 69 4.806775 TCTAACACACACACACACACATAC 59.193 41.667 0.00 0.00 0.00 2.39
69 70 2.979240 ACACACACACACACACATACA 58.021 42.857 0.00 0.00 0.00 2.29
91 92 2.163211 CACACACACACACAACAATGGA 59.837 45.455 0.00 0.00 0.00 3.41
156 157 4.875536 GTCCAATTTCAAAAGCACACCTTT 59.124 37.500 0.00 0.00 45.49 3.11
157 158 4.874966 TCCAATTTCAAAAGCACACCTTTG 59.125 37.500 0.00 0.00 42.82 2.77
158 159 4.874966 CCAATTTCAAAAGCACACCTTTGA 59.125 37.500 0.00 0.00 42.82 2.69
159 160 5.528320 CCAATTTCAAAAGCACACCTTTGAT 59.472 36.000 0.00 0.00 42.82 2.57
160 161 6.423862 CAATTTCAAAAGCACACCTTTGATG 58.576 36.000 0.00 0.00 42.82 3.07
162 163 4.305989 TCAAAAGCACACCTTTGATGTC 57.694 40.909 0.00 0.00 42.82 3.06
194 195 6.814644 TGATTCATGCAAAATTTCATGGAGTC 59.185 34.615 15.91 12.56 40.20 3.36
204 205 1.206811 TCATGGAGTCACATGCCCCA 61.207 55.000 13.70 0.00 46.02 4.96
205 206 0.106369 CATGGAGTCACATGCCCCAT 60.106 55.000 8.17 0.00 41.43 4.00
206 207 0.184451 ATGGAGTCACATGCCCCATC 59.816 55.000 0.00 0.00 32.58 3.51
209 210 1.701847 GGAGTCACATGCCCCATCTAT 59.298 52.381 0.00 0.00 0.00 1.98
210 211 2.906389 GGAGTCACATGCCCCATCTATA 59.094 50.000 0.00 0.00 0.00 1.31
211 212 3.055530 GGAGTCACATGCCCCATCTATAG 60.056 52.174 0.00 0.00 0.00 1.31
212 213 3.580458 GAGTCACATGCCCCATCTATAGT 59.420 47.826 0.00 0.00 0.00 2.12
213 214 4.752063 AGTCACATGCCCCATCTATAGTA 58.248 43.478 0.00 0.00 0.00 1.82
214 215 5.345418 AGTCACATGCCCCATCTATAGTAT 58.655 41.667 0.00 0.00 0.00 2.12
215 216 5.423610 AGTCACATGCCCCATCTATAGTATC 59.576 44.000 0.00 0.00 0.00 2.24
244 245 8.162878 ACCTCTAATGAAAGCATTATGACATG 57.837 34.615 0.00 0.00 43.85 3.21
270 286 8.837389 GGTTTTATATCCTGAATAGTTGTGACC 58.163 37.037 0.00 0.00 0.00 4.02
271 287 8.548721 GTTTTATATCCTGAATAGTTGTGACCG 58.451 37.037 0.00 0.00 0.00 4.79
272 288 7.591421 TTATATCCTGAATAGTTGTGACCGA 57.409 36.000 0.00 0.00 0.00 4.69
273 289 6.672266 ATATCCTGAATAGTTGTGACCGAT 57.328 37.500 0.00 0.00 0.00 4.18
274 290 4.819105 TCCTGAATAGTTGTGACCGATT 57.181 40.909 0.00 0.00 0.00 3.34
275 291 5.160607 TCCTGAATAGTTGTGACCGATTT 57.839 39.130 0.00 0.00 0.00 2.17
276 292 5.556915 TCCTGAATAGTTGTGACCGATTTT 58.443 37.500 0.00 0.00 0.00 1.82
277 293 6.001460 TCCTGAATAGTTGTGACCGATTTTT 58.999 36.000 0.00 0.00 0.00 1.94
310 326 4.247380 CTCCCCGGCCTCTGCATC 62.247 72.222 0.00 0.00 40.13 3.91
312 328 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
313 329 3.473647 CCCGGCCTCTGCATCAGA 61.474 66.667 0.00 0.00 38.25 3.27
314 330 2.586245 CCGGCCTCTGCATCAGAA 59.414 61.111 0.00 0.00 40.18 3.02
315 331 1.817099 CCGGCCTCTGCATCAGAAC 60.817 63.158 0.00 0.00 40.18 3.01
316 332 2.169789 CGGCCTCTGCATCAGAACG 61.170 63.158 0.00 0.63 40.18 3.95
317 333 1.219124 GGCCTCTGCATCAGAACGA 59.781 57.895 0.00 0.00 40.18 3.85
318 334 0.179062 GGCCTCTGCATCAGAACGAT 60.179 55.000 0.00 0.00 40.18 3.73
327 343 1.193203 CATCAGAACGATGCATACGGC 59.807 52.381 18.34 11.86 44.95 5.68
328 344 0.529773 TCAGAACGATGCATACGGCC 60.530 55.000 18.34 0.00 43.89 6.13
329 345 0.809636 CAGAACGATGCATACGGCCA 60.810 55.000 18.34 0.00 43.89 5.36
330 346 0.107897 AGAACGATGCATACGGCCAA 60.108 50.000 18.34 0.00 43.89 4.52
331 347 0.027586 GAACGATGCATACGGCCAAC 59.972 55.000 18.34 0.00 43.89 3.77
332 348 0.392461 AACGATGCATACGGCCAACT 60.392 50.000 18.34 0.00 43.89 3.16
333 349 0.392461 ACGATGCATACGGCCAACTT 60.392 50.000 18.34 0.00 43.89 2.66
334 350 0.732571 CGATGCATACGGCCAACTTT 59.267 50.000 2.24 0.00 43.89 2.66
335 351 1.937223 CGATGCATACGGCCAACTTTA 59.063 47.619 2.24 0.00 43.89 1.85
336 352 2.548057 CGATGCATACGGCCAACTTTAT 59.452 45.455 2.24 0.00 43.89 1.40
337 353 3.743911 CGATGCATACGGCCAACTTTATA 59.256 43.478 2.24 0.00 43.89 0.98
338 354 4.212425 CGATGCATACGGCCAACTTTATAA 59.788 41.667 2.24 0.00 43.89 0.98
339 355 5.277586 CGATGCATACGGCCAACTTTATAAA 60.278 40.000 2.24 0.00 43.89 1.40
340 356 5.899120 TGCATACGGCCAACTTTATAAAA 57.101 34.783 2.24 0.00 43.89 1.52
341 357 6.458232 TGCATACGGCCAACTTTATAAAAT 57.542 33.333 2.24 0.00 43.89 1.82
342 358 7.569639 TGCATACGGCCAACTTTATAAAATA 57.430 32.000 2.24 0.00 43.89 1.40
343 359 7.644490 TGCATACGGCCAACTTTATAAAATAG 58.356 34.615 2.24 0.00 43.89 1.73
344 360 6.581166 GCATACGGCCAACTTTATAAAATAGC 59.419 38.462 2.24 0.78 36.11 2.97
345 361 7.644490 CATACGGCCAACTTTATAAAATAGCA 58.356 34.615 2.24 0.00 0.00 3.49
346 362 6.518208 ACGGCCAACTTTATAAAATAGCAA 57.482 33.333 2.24 0.00 0.00 3.91
347 363 6.926313 ACGGCCAACTTTATAAAATAGCAAA 58.074 32.000 2.24 0.00 0.00 3.68
348 364 7.552459 ACGGCCAACTTTATAAAATAGCAAAT 58.448 30.769 2.24 0.00 0.00 2.32
349 365 8.688151 ACGGCCAACTTTATAAAATAGCAAATA 58.312 29.630 2.24 0.00 0.00 1.40
350 366 9.180678 CGGCCAACTTTATAAAATAGCAAATAG 57.819 33.333 2.24 0.00 0.00 1.73
369 385 3.533606 AGTTGCGACTGATAAGATGCT 57.466 42.857 5.59 0.00 33.99 3.79
380 396 7.758980 CGACTGATAAGATGCTATGCTATTTCT 59.241 37.037 0.00 0.00 0.00 2.52
419 435 6.312529 TCAGGAAAAGACACTAGAGACCTTA 58.687 40.000 0.00 0.00 0.00 2.69
420 436 6.954684 TCAGGAAAAGACACTAGAGACCTTAT 59.045 38.462 0.00 0.00 0.00 1.73
436 452 2.351726 CCTTATTTCCGGCGTTTGAGAG 59.648 50.000 6.01 0.00 0.00 3.20
447 463 2.935676 GCGTTTGAGAGGGGAGTTAAGG 60.936 54.545 0.00 0.00 0.00 2.69
540 1137 3.418619 CACTCGTTGTTGCATTTTTCTCG 59.581 43.478 0.00 0.00 0.00 4.04
581 1179 8.628630 TGAAAAATCATATGTACCAGTTGTCA 57.371 30.769 1.90 0.00 0.00 3.58
662 1265 4.015872 TCACAAGTGGAGGGTTTCATAC 57.984 45.455 0.00 0.00 0.00 2.39
747 1355 4.028648 CGCGTCCATGTTTTTCGTATTTTC 59.971 41.667 0.00 0.00 0.00 2.29
765 1373 4.664150 TTTCCGAAAACTTGGAAATGCT 57.336 36.364 2.45 0.00 46.48 3.79
770 1378 4.484236 CGAAAACTTGGAAATGCTGCATA 58.516 39.130 16.58 0.00 0.00 3.14
789 1397 0.459489 AAAATGTGTGGTGCGTGCTT 59.541 45.000 0.00 0.00 0.00 3.91
803 1411 2.473704 GCGTGCTTTGTTTTGTGTTTGG 60.474 45.455 0.00 0.00 0.00 3.28
804 1412 2.093467 CGTGCTTTGTTTTGTGTTTGGG 59.907 45.455 0.00 0.00 0.00 4.12
833 3295 1.981256 AACATTCTTCGGCCACAGTT 58.019 45.000 2.24 0.00 0.00 3.16
857 3319 1.067071 AGCTTTCGTCCGGTTTAGGAG 60.067 52.381 0.00 0.00 41.68 3.69
865 3327 0.179134 CCGGTTTAGGAGTCGAGCAG 60.179 60.000 0.00 0.00 0.00 4.24
894 3356 1.996191 CAACAAACCAAACCAACACGG 59.004 47.619 0.00 0.00 42.50 4.94
899 3361 1.226831 CCAAACCAACACGGCACAC 60.227 57.895 0.00 0.00 39.03 3.82
900 3362 1.226831 CAAACCAACACGGCACACC 60.227 57.895 0.00 0.00 39.03 4.16
901 3363 1.679305 AAACCAACACGGCACACCA 60.679 52.632 0.00 0.00 39.03 4.17
902 3364 1.662438 AAACCAACACGGCACACCAG 61.662 55.000 0.00 0.00 39.03 4.00
903 3365 2.203139 CCAACACGGCACACCAGA 60.203 61.111 0.00 0.00 34.57 3.86
904 3366 2.542907 CCAACACGGCACACCAGAC 61.543 63.158 0.00 0.00 34.57 3.51
905 3367 1.817520 CAACACGGCACACCAGACA 60.818 57.895 0.00 0.00 34.57 3.41
1032 3501 0.964358 GGCCTGAGTCAAAGCAGCAT 60.964 55.000 14.82 0.00 0.00 3.79
1175 3646 4.410400 CTCGAAGCCACCACCCCC 62.410 72.222 0.00 0.00 0.00 5.40
1176 3647 4.974438 TCGAAGCCACCACCCCCT 62.974 66.667 0.00 0.00 0.00 4.79
1330 3816 0.321830 TCCCCCGTTGATTTCGGTTC 60.322 55.000 3.78 0.00 45.63 3.62
1341 3827 3.254657 TGATTTCGGTTCCGATTTTGCTT 59.745 39.130 14.70 0.00 38.30 3.91
1351 3837 1.922135 GATTTTGCTTCCGCGGCTGA 61.922 55.000 23.51 7.98 39.65 4.26
1362 3848 4.527583 CGGCTGAGCTCTGGCCTC 62.528 72.222 32.30 17.74 43.29 4.70
1405 3891 0.985416 GTTCGTCGCGTGTTGCTTTC 60.985 55.000 5.77 0.00 43.27 2.62
1431 3917 3.879351 CTCGCGCTGTGGTTTTGCC 62.879 63.158 5.56 0.00 37.90 4.52
1490 3976 2.434702 CCGGAGAGCCCTAACTTATTGT 59.565 50.000 0.00 0.00 0.00 2.71
1538 4024 1.349688 TGCTGTCGTTGGAATTAGGGT 59.650 47.619 0.00 0.00 0.00 4.34
1662 4148 2.599082 GAGCGTCGTTCTAGAATGTTGG 59.401 50.000 21.34 13.69 0.00 3.77
1670 4156 1.757118 TCTAGAATGTTGGCGCTAGCT 59.243 47.619 13.93 0.00 44.37 3.32
1692 4182 2.551032 TCCTACTGTCGGTATATGCACG 59.449 50.000 0.00 0.00 0.00 5.34
1739 4230 3.818387 TGCACGACTAGAAGTTAGAACG 58.182 45.455 0.00 0.00 0.00 3.95
1761 4252 5.163437 ACGGACCTTCTGTAAATAGACATCC 60.163 44.000 0.00 0.00 33.46 3.51
1771 4262 7.769044 TCTGTAAATAGACATCCAAAGGCTAAC 59.231 37.037 0.00 0.00 0.00 2.34
1772 4263 6.537301 TGTAAATAGACATCCAAAGGCTAACG 59.463 38.462 0.00 0.00 0.00 3.18
1793 4286 0.850217 GGTTTTTGTTTTCGGCTCGC 59.150 50.000 0.00 0.00 0.00 5.03
1844 4337 3.495331 TCTGTTAAATTGAAGGCCAGCA 58.505 40.909 5.01 0.00 0.00 4.41
1889 4403 6.828785 AGTTCTGTCATAAACTCTGTGGTTTT 59.171 34.615 0.00 0.00 39.66 2.43
1890 4404 6.861065 TCTGTCATAAACTCTGTGGTTTTC 57.139 37.500 0.00 0.00 39.66 2.29
1891 4405 6.591935 TCTGTCATAAACTCTGTGGTTTTCT 58.408 36.000 0.00 0.00 39.66 2.52
1892 4406 7.054124 TCTGTCATAAACTCTGTGGTTTTCTT 58.946 34.615 0.00 0.00 39.66 2.52
1893 4407 7.556275 TCTGTCATAAACTCTGTGGTTTTCTTT 59.444 33.333 0.00 0.00 39.66 2.52
1894 4408 7.479980 TGTCATAAACTCTGTGGTTTTCTTTG 58.520 34.615 0.00 0.00 39.66 2.77
1895 4409 6.417930 GTCATAAACTCTGTGGTTTTCTTTGC 59.582 38.462 0.00 0.00 39.66 3.68
1896 4410 4.799564 AAACTCTGTGGTTTTCTTTGCA 57.200 36.364 0.00 0.00 36.16 4.08
1897 4411 4.799564 AACTCTGTGGTTTTCTTTGCAA 57.200 36.364 0.00 0.00 0.00 4.08
1898 4412 4.799564 ACTCTGTGGTTTTCTTTGCAAA 57.200 36.364 12.14 12.14 0.00 3.68
1899 4413 5.146010 ACTCTGTGGTTTTCTTTGCAAAA 57.854 34.783 13.84 1.75 0.00 2.44
1900 4414 5.546526 ACTCTGTGGTTTTCTTTGCAAAAA 58.453 33.333 13.84 7.86 0.00 1.94
1901 4415 6.172630 ACTCTGTGGTTTTCTTTGCAAAAAT 58.827 32.000 13.84 0.00 0.00 1.82
1902 4416 7.327214 ACTCTGTGGTTTTCTTTGCAAAAATA 58.673 30.769 13.84 3.74 0.00 1.40
1903 4417 7.821846 ACTCTGTGGTTTTCTTTGCAAAAATAA 59.178 29.630 13.84 5.34 0.00 1.40
1904 4418 8.729805 TCTGTGGTTTTCTTTGCAAAAATAAT 57.270 26.923 13.84 0.00 0.00 1.28
1905 4419 9.823647 TCTGTGGTTTTCTTTGCAAAAATAATA 57.176 25.926 13.84 1.16 0.00 0.98
1965 4479 7.375053 GTTTGTAAATCTTGCCTGGTTTCATA 58.625 34.615 0.00 0.00 0.00 2.15
2024 4538 9.922305 GTAATATGTGAAATTGAAGTCAGTAGC 57.078 33.333 0.00 0.00 0.00 3.58
2048 4562 6.401367 GCCAATTATCAATTGTTGTTGCTGTC 60.401 38.462 5.13 0.00 45.28 3.51
2143 4657 5.193663 ACATCTACATCTCACTGATTCGG 57.806 43.478 0.00 0.00 32.05 4.30
2145 4659 5.828328 ACATCTACATCTCACTGATTCGGTA 59.172 40.000 0.00 0.00 32.05 4.02
2156 4670 5.241728 TCACTGATTCGGTATAGATGTCCTG 59.758 44.000 0.00 0.00 0.00 3.86
2186 4700 7.816945 AAGCAGTAAATTGCAAATATGTGAC 57.183 32.000 1.71 0.00 46.47 3.67
2189 4703 6.042143 CAGTAAATTGCAAATATGTGACCCC 58.958 40.000 1.71 0.00 0.00 4.95
2210 4724 6.447084 ACCCCTTTAGAGTGAATCCTTATGAA 59.553 38.462 0.00 0.00 0.00 2.57
2245 4759 1.741028 TCAGGTTCATGAGGGGTTCA 58.259 50.000 0.00 0.00 40.85 3.18
2470 4984 6.742718 GTGTTAATCCGTTGATCATGAACAAG 59.257 38.462 17.72 11.83 0.00 3.16
3055 5569 4.848357 ACATATCTTGGTTCTTGGTCCAG 58.152 43.478 0.00 0.00 35.05 3.86
3072 5586 4.038642 GGTCCAGCTTTGTGGTATTTTCAA 59.961 41.667 0.00 0.00 38.88 2.69
3134 5648 0.373716 GCATTCTTGCCCGTAAGACG 59.626 55.000 0.00 0.00 43.38 4.18
3359 5873 0.462759 GCTCACGCTGCTTAATCCCT 60.463 55.000 0.00 0.00 0.00 4.20
3523 6037 5.201243 GGGGGTTATTGGATATTATCTGGC 58.799 45.833 3.77 0.00 0.00 4.85
3526 6040 4.881850 GGTTATTGGATATTATCTGGCCCG 59.118 45.833 0.00 0.00 0.00 6.13
3675 6189 5.869649 ACTGTTATTTGGCAGAAAAAGGT 57.130 34.783 0.00 0.00 36.62 3.50
3681 6195 9.620259 TGTTATTTGGCAGAAAAAGGTAAATTT 57.380 25.926 0.00 0.00 0.00 1.82
3682 6196 9.877137 GTTATTTGGCAGAAAAAGGTAAATTTG 57.123 29.630 0.00 0.00 0.00 2.32
3697 6211 7.511268 AGGTAAATTTGAATGCATGCCATAAT 58.489 30.769 16.68 5.12 32.67 1.28
3709 6223 4.379813 GCATGCCATAATAAGAATGGTCGG 60.380 45.833 6.36 0.00 44.87 4.79
3910 6620 3.129462 GGAGCTCTGCCTTTTATGTTTCC 59.871 47.826 14.64 0.00 0.00 3.13
3914 6624 4.021981 GCTCTGCCTTTTATGTTTCCTGTT 60.022 41.667 0.00 0.00 0.00 3.16
3920 6630 5.926542 GCCTTTTATGTTTCCTGTTCTTTCC 59.073 40.000 0.00 0.00 0.00 3.13
3922 6632 7.371159 CCTTTTATGTTTCCTGTTCTTTCCTC 58.629 38.462 0.00 0.00 0.00 3.71
3935 6645 9.231297 CCTGTTCTTTCCTCATATCAGTTTTTA 57.769 33.333 0.00 0.00 0.00 1.52
4024 6736 3.141398 CAGCAGCTACAGAAGTTTCCAA 58.859 45.455 0.00 0.00 0.00 3.53
4161 6873 5.350640 GGTAAACAAGTTGATAGGGAAGTCG 59.649 44.000 10.54 0.00 0.00 4.18
4164 6876 4.087182 ACAAGTTGATAGGGAAGTCGAGA 58.913 43.478 10.54 0.00 0.00 4.04
4197 6909 0.394762 TGGACATGAATGCAGGCCTC 60.395 55.000 0.00 0.00 0.00 4.70
4365 7077 3.075283 TCCCCTGTGTTGTGGTATCAATT 59.925 43.478 0.00 0.00 0.00 2.32
4500 7274 1.060698 GCGGCGTCTTCAGTTTGTATC 59.939 52.381 9.37 0.00 0.00 2.24
4539 7313 4.017958 TCTCTTCTCTCCTGGTGATACAGT 60.018 45.833 0.00 0.00 36.75 3.55
4545 7319 7.767250 TCTCTCCTGGTGATACAGTTATATG 57.233 40.000 0.00 0.00 36.75 1.78
4546 7320 7.298374 TCTCTCCTGGTGATACAGTTATATGT 58.702 38.462 0.00 0.00 36.75 2.29
4547 7321 8.445588 TCTCTCCTGGTGATACAGTTATATGTA 58.554 37.037 0.00 0.00 39.85 2.29
4548 7322 8.405418 TCTCCTGGTGATACAGTTATATGTAC 57.595 38.462 0.00 0.00 38.43 2.90
4770 7549 4.154347 GGCCCTCTCGTGCCTGAG 62.154 72.222 0.00 0.00 44.46 3.35
4809 7588 0.470766 AAACGTACTGGGTTGGCAGA 59.529 50.000 0.00 0.00 0.00 4.26
4810 7589 0.034896 AACGTACTGGGTTGGCAGAG 59.965 55.000 0.00 0.00 0.00 3.35
4913 7703 6.937465 GGAAACAGTTCATAGATTCTATCCCC 59.063 42.308 3.10 0.00 35.25 4.81
4934 7724 3.379372 CCGCATCATGATTTTGGACTTCT 59.621 43.478 5.16 0.00 0.00 2.85
4962 7752 3.628017 TGTTAAAGAGCAGCGAAAAAGC 58.372 40.909 0.00 0.00 37.41 3.51
4963 7753 3.066064 TGTTAAAGAGCAGCGAAAAAGCA 59.934 39.130 0.00 0.00 40.15 3.91
4995 7785 3.201487 AGATTCTTGATCCCTGTGCATCA 59.799 43.478 0.00 0.00 35.21 3.07
5077 7873 7.442062 ACATTCATATGTGCATGTCGATAAAGA 59.558 33.333 2.01 0.00 43.29 2.52
5081 7877 8.839343 TCATATGTGCATGTCGATAAAGAAAAT 58.161 29.630 1.90 0.00 0.00 1.82
5180 7997 2.098117 GTGGAATGAGCATTGGCAGTAC 59.902 50.000 0.00 0.00 44.61 2.73
5181 7998 1.678101 GGAATGAGCATTGGCAGTACC 59.322 52.381 0.00 0.00 44.61 3.34
5190 8007 2.818751 TTGGCAGTACCCCTTAATGG 57.181 50.000 2.27 0.00 37.83 3.16
5219 8036 4.040445 TGCAAGCTGTTTAGTTTGGTTC 57.960 40.909 6.12 0.00 43.07 3.62
5220 8037 3.445450 TGCAAGCTGTTTAGTTTGGTTCA 59.555 39.130 6.12 0.00 43.07 3.18
5266 8083 4.330944 ACAGTCACGTAAAAGTCCATGA 57.669 40.909 0.00 0.00 0.00 3.07
5267 8084 4.307432 ACAGTCACGTAAAAGTCCATGAG 58.693 43.478 0.00 0.00 0.00 2.90
5269 8086 2.415512 GTCACGTAAAAGTCCATGAGCC 59.584 50.000 0.00 0.00 0.00 4.70
5270 8087 2.301870 TCACGTAAAAGTCCATGAGCCT 59.698 45.455 0.00 0.00 0.00 4.58
5271 8088 3.074412 CACGTAAAAGTCCATGAGCCTT 58.926 45.455 0.00 0.00 0.00 4.35
5272 8089 3.125316 CACGTAAAAGTCCATGAGCCTTC 59.875 47.826 0.00 0.00 0.00 3.46
5274 8091 3.619038 CGTAAAAGTCCATGAGCCTTCTC 59.381 47.826 0.00 0.00 39.78 2.87
5276 8093 1.661463 AAGTCCATGAGCCTTCTCCA 58.339 50.000 0.00 0.00 38.58 3.86
5279 8108 2.087646 GTCCATGAGCCTTCTCCAAAC 58.912 52.381 0.00 0.00 38.58 2.93
5288 8117 5.394115 TGAGCCTTCTCCAAACTTTTGTTTC 60.394 40.000 1.21 0.00 42.22 2.78
5316 8145 1.764134 TGTTTACAACGTGGAGGAGGT 59.236 47.619 0.00 0.00 0.00 3.85
5317 8146 2.140717 GTTTACAACGTGGAGGAGGTG 58.859 52.381 0.00 0.00 0.00 4.00
5318 8147 0.034337 TTACAACGTGGAGGAGGTGC 59.966 55.000 0.00 0.00 0.00 5.01
5319 8148 1.116536 TACAACGTGGAGGAGGTGCA 61.117 55.000 0.00 0.00 0.00 4.57
5321 8150 2.140792 AACGTGGAGGAGGTGCACT 61.141 57.895 17.98 2.27 45.11 4.40
5322 8151 2.100879 AACGTGGAGGAGGTGCACTC 62.101 60.000 17.98 11.88 45.11 3.51
5324 8153 1.294780 GTGGAGGAGGTGCACTCTG 59.705 63.158 17.98 0.00 43.96 3.35
5325 8154 1.915266 TGGAGGAGGTGCACTCTGG 60.915 63.158 17.98 0.00 45.83 3.86
5326 8155 1.915769 GGAGGAGGTGCACTCTGGT 60.916 63.158 17.98 1.62 45.83 4.00
5328 8157 1.267121 GAGGAGGTGCACTCTGGTTA 58.733 55.000 17.98 0.00 45.83 2.85
5329 8158 0.977395 AGGAGGTGCACTCTGGTTAC 59.023 55.000 17.98 0.00 45.83 2.50
5333 8162 2.037251 GAGGTGCACTCTGGTTACTTCA 59.963 50.000 17.98 0.00 43.14 3.02
5348 8270 1.134280 ACTTCAGCTATGGCGCAGATT 60.134 47.619 10.83 0.00 44.37 2.40
5349 8271 1.530293 CTTCAGCTATGGCGCAGATTC 59.470 52.381 10.83 0.00 44.37 2.52
5381 8303 1.368019 CGCCACATAATCAAGCGCG 60.368 57.895 0.00 0.00 40.35 6.86
5386 8308 2.348872 CCACATAATCAAGCGCGTGATC 60.349 50.000 33.49 0.00 37.25 2.92
5449 8372 8.694581 TTGATTAATATGATGAATGTGGAGCA 57.305 30.769 0.00 0.00 0.00 4.26
5450 8373 8.873186 TGATTAATATGATGAATGTGGAGCAT 57.127 30.769 0.00 0.00 40.03 3.79
5513 8436 3.308323 TGAAAACCAAACGAAATTGCAGC 59.692 39.130 0.00 0.00 0.00 5.25
5545 8468 0.618981 AAGACAAGGGAATCGGGGAC 59.381 55.000 0.00 0.00 0.00 4.46
5591 8514 0.874607 GTCGGGATGTATGCGTGTCC 60.875 60.000 0.00 0.00 0.00 4.02
5655 8578 1.640428 TCATCACCTCGCATCGAAAC 58.360 50.000 0.00 0.00 34.74 2.78
5663 8586 1.062587 CTCGCATCGAAACCAATCCAC 59.937 52.381 0.00 0.00 34.74 4.02
5665 8588 0.098728 GCATCGAAACCAATCCACCG 59.901 55.000 0.00 0.00 0.00 4.94
5672 8595 3.489398 CGAAACCAATCCACCGTCAAAAA 60.489 43.478 0.00 0.00 0.00 1.94
5690 8613 7.116090 CGTCAAAAACAAATCCAGCATATCAAA 59.884 33.333 0.00 0.00 0.00 2.69
5692 8615 9.504708 TCAAAAACAAATCCAGCATATCAAAAT 57.495 25.926 0.00 0.00 0.00 1.82
5722 8648 7.504924 AGAATAAACATCCAGAAAACAACGA 57.495 32.000 0.00 0.00 0.00 3.85
5731 8657 2.855370 CAGAAAACAACGAAAAACCGGG 59.145 45.455 6.32 0.00 0.00 5.73
5736 8663 1.605232 ACAACGAAAAACCGGGATCAC 59.395 47.619 6.32 0.00 0.00 3.06
5823 8750 2.435938 TTCCTCATTGCCGGCGAC 60.436 61.111 21.40 0.00 0.00 5.19
5829 8756 1.743623 CATTGCCGGCGACCACTTA 60.744 57.895 21.40 0.00 0.00 2.24
5830 8757 1.095228 CATTGCCGGCGACCACTTAT 61.095 55.000 21.40 0.00 0.00 1.73
5845 8784 3.888930 CCACTTATCAACAACCAACAGGT 59.111 43.478 0.00 0.00 37.19 4.00
5850 8789 6.153680 ACTTATCAACAACCAACAGGTGAAAA 59.846 34.615 0.00 0.00 35.32 2.29
5867 8806 6.066128 GTGAAAAACTCACGAAACTTGTTG 57.934 37.500 0.00 0.00 44.95 3.33
5885 8824 4.130857 TGTTGAGAACCAAGCGATTTGTA 58.869 39.130 0.00 0.00 35.03 2.41
5888 8827 4.385825 TGAGAACCAAGCGATTTGTACTT 58.614 39.130 0.00 0.00 34.87 2.24
5891 8830 4.819630 AGAACCAAGCGATTTGTACTTCAA 59.180 37.500 0.00 0.00 34.87 2.69
5971 9596 6.698766 GCATCAAAAATCAGATACCAATGGAC 59.301 38.462 6.16 0.00 0.00 4.02
6002 9661 0.107945 AGGGAGAGATGCGTTCTTGC 60.108 55.000 0.00 0.00 33.74 4.01
6041 9700 2.095461 GGAAAGAATCCTGTGCCCTTC 58.905 52.381 0.00 0.00 45.56 3.46
6043 9702 3.359950 GAAAGAATCCTGTGCCCTTCAT 58.640 45.455 0.00 0.00 0.00 2.57
6091 9753 4.157849 GGAAACCCTAAAGAGATCCTGG 57.842 50.000 0.00 0.00 0.00 4.45
6092 9754 3.523972 GGAAACCCTAAAGAGATCCTGGT 59.476 47.826 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 7.893658 AGAGAGAGTCCGTTTTGAAGTTAATA 58.106 34.615 0.00 0.00 0.00 0.98
3 4 6.760291 AGAGAGAGTCCGTTTTGAAGTTAAT 58.240 36.000 0.00 0.00 0.00 1.40
5 6 5.535406 AGAGAGAGAGTCCGTTTTGAAGTTA 59.465 40.000 0.00 0.00 0.00 2.24
6 7 4.342665 AGAGAGAGAGTCCGTTTTGAAGTT 59.657 41.667 0.00 0.00 0.00 2.66
7 8 3.892588 AGAGAGAGAGTCCGTTTTGAAGT 59.107 43.478 0.00 0.00 0.00 3.01
8 9 4.217550 AGAGAGAGAGAGTCCGTTTTGAAG 59.782 45.833 0.00 0.00 0.00 3.02
9 10 4.145807 AGAGAGAGAGAGTCCGTTTTGAA 58.854 43.478 0.00 0.00 0.00 2.69
10 11 3.754323 GAGAGAGAGAGAGTCCGTTTTGA 59.246 47.826 0.00 0.00 0.00 2.69
11 12 3.756434 AGAGAGAGAGAGAGTCCGTTTTG 59.244 47.826 0.00 0.00 0.00 2.44
12 13 4.007659 GAGAGAGAGAGAGAGTCCGTTTT 58.992 47.826 0.00 0.00 0.00 2.43
13 14 3.263425 AGAGAGAGAGAGAGAGTCCGTTT 59.737 47.826 0.00 0.00 0.00 3.60
14 15 2.838202 AGAGAGAGAGAGAGAGTCCGTT 59.162 50.000 0.00 0.00 0.00 4.44
15 16 2.431057 GAGAGAGAGAGAGAGAGTCCGT 59.569 54.545 0.00 0.00 0.00 4.69
16 17 2.695666 AGAGAGAGAGAGAGAGAGTCCG 59.304 54.545 0.00 0.00 0.00 4.79
17 18 3.964031 AGAGAGAGAGAGAGAGAGAGTCC 59.036 52.174 0.00 0.00 0.00 3.85
18 19 4.892934 AGAGAGAGAGAGAGAGAGAGAGTC 59.107 50.000 0.00 0.00 0.00 3.36
19 20 4.877773 AGAGAGAGAGAGAGAGAGAGAGT 58.122 47.826 0.00 0.00 0.00 3.24
20 21 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
21 22 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
22 23 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
23 24 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
24 25 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
25 26 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
26 27 6.322456 TGTTAGAGAGAGAGAGAGAGAGAGAG 59.678 46.154 0.00 0.00 0.00 3.20
27 28 6.096987 GTGTTAGAGAGAGAGAGAGAGAGAGA 59.903 46.154 0.00 0.00 0.00 3.10
28 29 6.127338 TGTGTTAGAGAGAGAGAGAGAGAGAG 60.127 46.154 0.00 0.00 0.00 3.20
29 30 5.719563 TGTGTTAGAGAGAGAGAGAGAGAGA 59.280 44.000 0.00 0.00 0.00 3.10
30 31 5.812642 GTGTGTTAGAGAGAGAGAGAGAGAG 59.187 48.000 0.00 0.00 0.00 3.20
31 32 5.247337 TGTGTGTTAGAGAGAGAGAGAGAGA 59.753 44.000 0.00 0.00 0.00 3.10
32 33 5.351465 GTGTGTGTTAGAGAGAGAGAGAGAG 59.649 48.000 0.00 0.00 0.00 3.20
33 34 5.221742 TGTGTGTGTTAGAGAGAGAGAGAGA 60.222 44.000 0.00 0.00 0.00 3.10
34 35 5.000591 TGTGTGTGTTAGAGAGAGAGAGAG 58.999 45.833 0.00 0.00 0.00 3.20
35 36 4.757657 GTGTGTGTGTTAGAGAGAGAGAGA 59.242 45.833 0.00 0.00 0.00 3.10
36 37 4.517075 TGTGTGTGTGTTAGAGAGAGAGAG 59.483 45.833 0.00 0.00 0.00 3.20
37 38 4.276183 GTGTGTGTGTGTTAGAGAGAGAGA 59.724 45.833 0.00 0.00 0.00 3.10
38 39 4.036852 TGTGTGTGTGTGTTAGAGAGAGAG 59.963 45.833 0.00 0.00 0.00 3.20
39 40 3.951680 TGTGTGTGTGTGTTAGAGAGAGA 59.048 43.478 0.00 0.00 0.00 3.10
40 41 4.045104 GTGTGTGTGTGTGTTAGAGAGAG 58.955 47.826 0.00 0.00 0.00 3.20
41 42 3.445805 TGTGTGTGTGTGTGTTAGAGAGA 59.554 43.478 0.00 0.00 0.00 3.10
42 43 3.551890 GTGTGTGTGTGTGTGTTAGAGAG 59.448 47.826 0.00 0.00 0.00 3.20
43 44 3.056465 TGTGTGTGTGTGTGTGTTAGAGA 60.056 43.478 0.00 0.00 0.00 3.10
44 45 3.258228 TGTGTGTGTGTGTGTGTTAGAG 58.742 45.455 0.00 0.00 0.00 2.43
45 46 3.320673 TGTGTGTGTGTGTGTGTTAGA 57.679 42.857 0.00 0.00 0.00 2.10
46 47 4.568760 TGTATGTGTGTGTGTGTGTGTTAG 59.431 41.667 0.00 0.00 0.00 2.34
47 48 4.330347 GTGTATGTGTGTGTGTGTGTGTTA 59.670 41.667 0.00 0.00 0.00 2.41
48 49 3.126171 GTGTATGTGTGTGTGTGTGTGTT 59.874 43.478 0.00 0.00 0.00 3.32
49 50 2.675844 GTGTATGTGTGTGTGTGTGTGT 59.324 45.455 0.00 0.00 0.00 3.72
50 51 2.675348 TGTGTATGTGTGTGTGTGTGTG 59.325 45.455 0.00 0.00 0.00 3.82
51 52 2.675844 GTGTGTATGTGTGTGTGTGTGT 59.324 45.455 0.00 0.00 0.00 3.72
52 53 2.675348 TGTGTGTATGTGTGTGTGTGTG 59.325 45.455 0.00 0.00 0.00 3.82
53 54 2.675844 GTGTGTGTATGTGTGTGTGTGT 59.324 45.455 0.00 0.00 0.00 3.72
54 55 2.675348 TGTGTGTGTATGTGTGTGTGTG 59.325 45.455 0.00 0.00 0.00 3.82
55 56 2.675844 GTGTGTGTGTATGTGTGTGTGT 59.324 45.455 0.00 0.00 0.00 3.72
56 57 2.675348 TGTGTGTGTGTATGTGTGTGTG 59.325 45.455 0.00 0.00 0.00 3.82
57 58 2.675844 GTGTGTGTGTGTATGTGTGTGT 59.324 45.455 0.00 0.00 0.00 3.72
58 59 2.675348 TGTGTGTGTGTGTATGTGTGTG 59.325 45.455 0.00 0.00 0.00 3.82
59 60 2.675844 GTGTGTGTGTGTGTATGTGTGT 59.324 45.455 0.00 0.00 0.00 3.72
60 61 2.675348 TGTGTGTGTGTGTGTATGTGTG 59.325 45.455 0.00 0.00 0.00 3.82
61 62 2.675844 GTGTGTGTGTGTGTGTATGTGT 59.324 45.455 0.00 0.00 0.00 3.72
62 63 2.675348 TGTGTGTGTGTGTGTGTATGTG 59.325 45.455 0.00 0.00 0.00 3.21
63 64 2.979240 TGTGTGTGTGTGTGTGTATGT 58.021 42.857 0.00 0.00 0.00 2.29
64 65 3.126000 TGTTGTGTGTGTGTGTGTGTATG 59.874 43.478 0.00 0.00 0.00 2.39
65 66 3.339141 TGTTGTGTGTGTGTGTGTGTAT 58.661 40.909 0.00 0.00 0.00 2.29
66 67 2.767505 TGTTGTGTGTGTGTGTGTGTA 58.232 42.857 0.00 0.00 0.00 2.90
67 68 1.598882 TGTTGTGTGTGTGTGTGTGT 58.401 45.000 0.00 0.00 0.00 3.72
68 69 2.695613 TTGTTGTGTGTGTGTGTGTG 57.304 45.000 0.00 0.00 0.00 3.82
69 70 2.094803 CCATTGTTGTGTGTGTGTGTGT 60.095 45.455 0.00 0.00 0.00 3.72
91 92 7.778083 ACAAAGTTAACTCGGATTTCCTTTTT 58.222 30.769 8.95 0.00 0.00 1.94
156 157 6.578163 TGCATGAATCAAAAAGAGACATCA 57.422 33.333 0.00 0.00 0.00 3.07
157 158 7.878477 TTTGCATGAATCAAAAAGAGACATC 57.122 32.000 0.00 0.00 31.27 3.06
158 159 8.842358 ATTTTGCATGAATCAAAAAGAGACAT 57.158 26.923 11.94 0.00 43.77 3.06
159 160 8.665643 AATTTTGCATGAATCAAAAAGAGACA 57.334 26.923 11.94 0.00 43.77 3.41
160 161 9.590088 GAAATTTTGCATGAATCAAAAAGAGAC 57.410 29.630 11.94 2.69 43.77 3.36
194 195 4.141620 GGGATACTATAGATGGGGCATGTG 60.142 50.000 6.78 0.00 0.00 3.21
209 210 7.302948 TGCTTTCATTAGAGGTAGGGATACTA 58.697 38.462 0.00 0.00 0.00 1.82
210 211 6.143915 TGCTTTCATTAGAGGTAGGGATACT 58.856 40.000 0.00 0.00 0.00 2.12
211 212 6.420913 TGCTTTCATTAGAGGTAGGGATAC 57.579 41.667 0.00 0.00 0.00 2.24
212 213 7.633018 AATGCTTTCATTAGAGGTAGGGATA 57.367 36.000 0.00 0.00 40.89 2.59
213 214 6.521527 AATGCTTTCATTAGAGGTAGGGAT 57.478 37.500 0.00 0.00 40.89 3.85
214 215 5.975988 AATGCTTTCATTAGAGGTAGGGA 57.024 39.130 0.00 0.00 40.89 4.20
215 216 7.389053 GTCATAATGCTTTCATTAGAGGTAGGG 59.611 40.741 4.40 0.00 45.31 3.53
244 245 8.837389 GGTCACAACTATTCAGGATATAAAACC 58.163 37.037 0.00 0.00 0.00 3.27
249 250 7.776618 ATCGGTCACAACTATTCAGGATATA 57.223 36.000 0.00 0.00 0.00 0.86
250 251 6.672266 ATCGGTCACAACTATTCAGGATAT 57.328 37.500 0.00 0.00 0.00 1.63
251 252 6.479972 AATCGGTCACAACTATTCAGGATA 57.520 37.500 0.00 0.00 0.00 2.59
252 253 5.359194 AATCGGTCACAACTATTCAGGAT 57.641 39.130 0.00 0.00 0.00 3.24
293 309 4.247380 GATGCAGAGGCCGGGGAG 62.247 72.222 2.18 0.00 40.13 4.30
295 311 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
296 312 3.035173 TTCTGATGCAGAGGCCGGG 62.035 63.158 2.18 0.00 41.75 5.73
297 313 1.817099 GTTCTGATGCAGAGGCCGG 60.817 63.158 0.00 0.00 41.75 6.13
298 314 2.169789 CGTTCTGATGCAGAGGCCG 61.170 63.158 0.00 0.00 41.75 6.13
299 315 0.179062 ATCGTTCTGATGCAGAGGCC 60.179 55.000 0.00 0.00 41.75 5.19
300 316 3.376218 ATCGTTCTGATGCAGAGGC 57.624 52.632 0.00 0.00 41.75 4.70
308 324 1.502231 GCCGTATGCATCGTTCTGAT 58.498 50.000 0.19 0.00 40.77 2.90
309 325 0.529773 GGCCGTATGCATCGTTCTGA 60.530 55.000 0.19 0.00 43.89 3.27
310 326 0.809636 TGGCCGTATGCATCGTTCTG 60.810 55.000 0.19 0.00 43.89 3.02
311 327 0.107897 TTGGCCGTATGCATCGTTCT 60.108 50.000 0.19 0.00 43.89 3.01
312 328 0.027586 GTTGGCCGTATGCATCGTTC 59.972 55.000 0.19 2.49 43.89 3.95
313 329 0.392461 AGTTGGCCGTATGCATCGTT 60.392 50.000 0.19 0.00 43.89 3.85
314 330 0.392461 AAGTTGGCCGTATGCATCGT 60.392 50.000 0.19 0.00 43.89 3.73
315 331 0.732571 AAAGTTGGCCGTATGCATCG 59.267 50.000 0.19 7.03 43.89 3.84
316 332 5.682943 TTATAAAGTTGGCCGTATGCATC 57.317 39.130 0.19 0.00 43.89 3.91
317 333 6.458232 TTTTATAAAGTTGGCCGTATGCAT 57.542 33.333 3.79 3.79 43.89 3.96
318 334 5.899120 TTTTATAAAGTTGGCCGTATGCA 57.101 34.783 0.00 0.00 43.89 3.96
319 335 6.581166 GCTATTTTATAAAGTTGGCCGTATGC 59.419 38.462 0.00 0.00 40.16 3.14
320 336 7.644490 TGCTATTTTATAAAGTTGGCCGTATG 58.356 34.615 0.00 0.00 0.00 2.39
321 337 7.811117 TGCTATTTTATAAAGTTGGCCGTAT 57.189 32.000 0.00 0.00 0.00 3.06
322 338 7.627298 TTGCTATTTTATAAAGTTGGCCGTA 57.373 32.000 0.00 0.00 0.00 4.02
323 339 6.518208 TTGCTATTTTATAAAGTTGGCCGT 57.482 33.333 0.00 0.00 0.00 5.68
324 340 9.180678 CTATTTGCTATTTTATAAAGTTGGCCG 57.819 33.333 0.00 0.00 0.00 6.13
344 360 6.018425 AGCATCTTATCAGTCGCAACTATTTG 60.018 38.462 0.00 0.00 33.25 2.32
345 361 6.051717 AGCATCTTATCAGTCGCAACTATTT 58.948 36.000 0.00 0.00 33.25 1.40
346 362 5.605534 AGCATCTTATCAGTCGCAACTATT 58.394 37.500 0.00 0.00 33.25 1.73
347 363 5.207110 AGCATCTTATCAGTCGCAACTAT 57.793 39.130 0.00 0.00 33.25 2.12
348 364 4.655762 AGCATCTTATCAGTCGCAACTA 57.344 40.909 0.00 0.00 33.25 2.24
349 365 3.533606 AGCATCTTATCAGTCGCAACT 57.466 42.857 0.00 0.00 35.60 3.16
350 366 4.376819 GCATAGCATCTTATCAGTCGCAAC 60.377 45.833 0.00 0.00 0.00 4.17
351 367 3.742882 GCATAGCATCTTATCAGTCGCAA 59.257 43.478 0.00 0.00 0.00 4.85
352 368 3.006217 AGCATAGCATCTTATCAGTCGCA 59.994 43.478 0.00 0.00 0.00 5.10
353 369 3.583806 AGCATAGCATCTTATCAGTCGC 58.416 45.455 0.00 0.00 0.00 5.19
354 370 7.758980 AGAAATAGCATAGCATCTTATCAGTCG 59.241 37.037 0.00 0.00 0.00 4.18
357 373 9.033481 GCTAGAAATAGCATAGCATCTTATCAG 57.967 37.037 0.00 0.00 41.25 2.90
363 379 5.047731 TCACGCTAGAAATAGCATAGCATCT 60.048 40.000 7.92 0.00 41.60 2.90
369 385 6.144078 TGTTCTCACGCTAGAAATAGCATA 57.856 37.500 7.92 0.00 42.95 3.14
380 396 0.528017 CCTGAGCTGTTCTCACGCTA 59.472 55.000 0.00 0.00 46.34 4.26
399 415 7.275999 CGGAAATAAGGTCTCTAGTGTCTTTTC 59.724 40.741 7.87 0.00 0.00 2.29
419 435 0.676782 CCCTCTCAAACGCCGGAAAT 60.677 55.000 5.05 0.00 0.00 2.17
420 436 1.302192 CCCTCTCAAACGCCGGAAA 60.302 57.895 5.05 0.00 0.00 3.13
436 452 3.418995 GAAACTTCACCCTTAACTCCCC 58.581 50.000 0.00 0.00 0.00 4.81
447 463 0.591659 GAACCTGGCGAAACTTCACC 59.408 55.000 0.00 0.00 0.00 4.02
515 1112 0.031994 AAATGCAACAACGAGTGGGC 59.968 50.000 0.00 0.00 33.56 5.36
523 1120 5.949233 AACTTCGAGAAAAATGCAACAAC 57.051 34.783 0.00 0.00 0.00 3.32
552 1149 9.912634 CAACTGGTACATATGATTTTTCAGTTT 57.087 29.630 10.38 3.65 39.81 2.66
569 1167 7.786178 TTGCATAAGATATGACAACTGGTAC 57.214 36.000 1.65 0.00 0.00 3.34
603 1206 9.236691 GCAGGTCACATATAATTGTATTGTTTG 57.763 33.333 0.00 0.00 0.00 2.93
636 1239 4.099266 TGAAACCCTCCACTTGTGAATTTG 59.901 41.667 1.89 0.00 0.00 2.32
640 1243 3.593442 ATGAAACCCTCCACTTGTGAA 57.407 42.857 1.89 0.00 0.00 3.18
649 1252 2.367567 TGGATAGCGTATGAAACCCTCC 59.632 50.000 0.00 0.00 0.00 4.30
652 1255 2.870411 GTGTGGATAGCGTATGAAACCC 59.130 50.000 0.00 0.00 0.00 4.11
718 1326 4.142773 ACGAAAAACATGGACGCGAATTAT 60.143 37.500 15.93 0.00 0.00 1.28
723 1331 1.780806 TACGAAAAACATGGACGCGA 58.219 45.000 15.93 0.00 0.00 5.87
726 1334 4.551892 CGGAAAATACGAAAAACATGGACG 59.448 41.667 0.00 0.00 0.00 4.79
747 1355 2.061028 GCAGCATTTCCAAGTTTTCGG 58.939 47.619 0.00 0.00 0.00 4.30
757 1365 4.330620 CCACACATTTTATGCAGCATTTCC 59.669 41.667 14.58 0.00 0.00 3.13
765 1373 1.611006 ACGCACCACACATTTTATGCA 59.389 42.857 0.00 0.00 33.27 3.96
770 1378 0.459489 AAGCACGCACCACACATTTT 59.541 45.000 0.00 0.00 0.00 1.82
789 1397 2.416972 GCCGTACCCAAACACAAAACAA 60.417 45.455 0.00 0.00 0.00 2.83
803 1411 2.470257 CGAAGAATGTTATCGCCGTACC 59.530 50.000 0.00 0.00 0.00 3.34
804 1412 2.470257 CCGAAGAATGTTATCGCCGTAC 59.530 50.000 0.00 0.00 35.35 3.67
833 3295 2.243602 AAACCGGACGAAAGCTGTTA 57.756 45.000 9.46 0.00 0.00 2.41
857 3319 2.436824 GGGGCCTTTCTGCTCGAC 60.437 66.667 0.84 0.00 30.27 4.20
865 3327 0.833949 TTGGTTTGTTGGGGCCTTTC 59.166 50.000 0.84 0.00 0.00 2.62
894 3356 2.980233 GCCTGGTGTCTGGTGTGC 60.980 66.667 0.00 0.00 34.83 4.57
946 3415 3.245264 GGAAAGGGGACAAAATGAGAGGA 60.245 47.826 0.00 0.00 0.00 3.71
1070 3539 2.038762 AGGGGACTGGTTGGTGGT 60.039 61.111 0.00 0.00 41.13 4.16
1218 3689 1.205055 GGGGTTTAGGAGTGGAGGAG 58.795 60.000 0.00 0.00 0.00 3.69
1351 3837 1.557269 AATTCCACGAGGCCAGAGCT 61.557 55.000 5.01 0.00 39.73 4.09
1362 3848 3.192922 GCGGGTCGGAATTCCACG 61.193 66.667 24.09 20.63 35.14 4.94
1490 3976 1.406180 TCTCAACAAGTTCGACGACCA 59.594 47.619 0.00 0.00 0.00 4.02
1662 4148 0.592754 CGACAGTAGGAAGCTAGCGC 60.593 60.000 9.55 0.00 0.00 5.92
1670 4156 3.004002 CGTGCATATACCGACAGTAGGAA 59.996 47.826 6.72 0.00 33.42 3.36
1739 4230 6.235231 TGGATGTCTATTTACAGAAGGTCC 57.765 41.667 0.00 0.00 31.70 4.46
1761 4252 3.776340 ACAAAAACCACGTTAGCCTTTG 58.224 40.909 0.00 0.00 30.60 2.77
1771 4262 1.849829 GAGCCGAAAACAAAAACCACG 59.150 47.619 0.00 0.00 0.00 4.94
1772 4263 1.849829 CGAGCCGAAAACAAAAACCAC 59.150 47.619 0.00 0.00 0.00 4.16
1793 4286 4.638865 CGACCCAGTTTATTAAGGGGAAAG 59.361 45.833 13.69 4.50 45.83 2.62
1870 4384 6.417930 GCAAAGAAAACCACAGAGTTTATGAC 59.582 38.462 0.00 0.00 39.00 3.06
1872 4386 6.272318 TGCAAAGAAAACCACAGAGTTTATG 58.728 36.000 0.00 0.00 39.00 1.90
1910 4424 9.853555 CATGCATAATTTAAACCACAGAGTTTA 57.146 29.630 0.00 0.00 40.38 2.01
1911 4425 8.584157 TCATGCATAATTTAAACCACAGAGTTT 58.416 29.630 0.00 0.00 42.47 2.66
1912 4426 8.121305 TCATGCATAATTTAAACCACAGAGTT 57.879 30.769 0.00 0.00 0.00 3.01
1913 4427 7.148018 CCTCATGCATAATTTAAACCACAGAGT 60.148 37.037 0.00 0.00 0.00 3.24
1914 4428 7.198390 CCTCATGCATAATTTAAACCACAGAG 58.802 38.462 0.00 0.00 0.00 3.35
1915 4429 6.096705 CCCTCATGCATAATTTAAACCACAGA 59.903 38.462 0.00 0.00 0.00 3.41
1916 4430 6.127366 ACCCTCATGCATAATTTAAACCACAG 60.127 38.462 0.00 0.00 0.00 3.66
1917 4431 5.719085 ACCCTCATGCATAATTTAAACCACA 59.281 36.000 0.00 0.00 0.00 4.17
1918 4432 6.220726 ACCCTCATGCATAATTTAAACCAC 57.779 37.500 0.00 0.00 0.00 4.16
1919 4433 6.865834 AACCCTCATGCATAATTTAAACCA 57.134 33.333 0.00 0.00 0.00 3.67
1920 4434 7.102993 ACAAACCCTCATGCATAATTTAAACC 58.897 34.615 0.00 0.00 0.00 3.27
1921 4435 9.646427 TTACAAACCCTCATGCATAATTTAAAC 57.354 29.630 0.00 0.00 0.00 2.01
2048 4562 6.072112 TGCATCAGATGATCACAATTGATG 57.928 37.500 23.11 23.11 42.95 3.07
2143 4657 8.343168 ACTGCTTATAGACAGGACATCTATAC 57.657 38.462 8.46 0.00 40.00 1.47
2145 4659 8.941995 TTACTGCTTATAGACAGGACATCTAT 57.058 34.615 8.46 0.00 41.33 1.98
2186 4700 6.500589 TCATAAGGATTCACTCTAAAGGGG 57.499 41.667 0.00 0.00 0.00 4.79
2210 4724 9.158233 CATGAACCTGAAATTATTGCAAGAAAT 57.842 29.630 11.02 7.26 0.00 2.17
2215 4729 6.351202 CCCTCATGAACCTGAAATTATTGCAA 60.351 38.462 0.00 0.00 0.00 4.08
2245 4759 2.102588 CCTACGGTCCGGATTCATTCTT 59.897 50.000 17.28 0.00 0.00 2.52
2470 4984 3.658757 TGGCATGGCTTAAACACTTTC 57.341 42.857 21.08 0.00 0.00 2.62
2869 5383 7.898470 ATATGGGTTTATTAGACATACCCCA 57.102 36.000 0.00 0.00 46.40 4.96
3055 5569 9.730420 ATCGTATATTTGAAAATACCACAAAGC 57.270 29.630 0.00 0.00 37.04 3.51
3128 5642 5.697633 GTCAAAATGTTACTCCCACGTCTTA 59.302 40.000 0.00 0.00 0.00 2.10
3134 5648 4.522789 ACATGGTCAAAATGTTACTCCCAC 59.477 41.667 0.00 0.00 34.60 4.61
3359 5873 6.068010 ACACTACTCACCATTTGATTTCCAA 58.932 36.000 0.00 0.00 32.17 3.53
3681 6195 6.268158 ACCATTCTTATTATGGCATGCATTCA 59.732 34.615 21.36 8.94 45.24 2.57
3682 6196 6.694447 ACCATTCTTATTATGGCATGCATTC 58.306 36.000 21.36 2.31 45.24 2.67
3868 6577 6.071896 AGCTCCTGCCTCTGTTTAAATAAAAC 60.072 38.462 0.00 0.00 43.01 2.43
3869 6578 6.010219 AGCTCCTGCCTCTGTTTAAATAAAA 58.990 36.000 0.00 0.00 40.80 1.52
3874 6583 2.639839 AGAGCTCCTGCCTCTGTTTAAA 59.360 45.455 10.93 0.00 40.80 1.52
3973 6685 5.482908 CTCTGGGATAGGTGTTATACATGC 58.517 45.833 0.00 0.00 0.00 4.06
4164 6876 9.570468 GCATTCATGTCCATGATATTCCTATAT 57.430 33.333 10.56 0.00 46.12 0.86
4197 6909 0.936297 GCACTGCAGCAAAACTTCCG 60.936 55.000 15.27 0.00 0.00 4.30
4365 7077 7.834803 TCAACACATCAACATATTATTTGCCA 58.165 30.769 0.00 0.00 0.00 4.92
4500 7274 6.152661 AGAGAAGAGATCACCTACTTGTTCTG 59.847 42.308 0.00 0.00 0.00 3.02
4556 7335 3.941704 AGAAGAGGTCATGGATTTCCC 57.058 47.619 0.00 0.00 34.29 3.97
4770 7549 6.691388 ACGTTTTTACAGCAATCAGAAGTTTC 59.309 34.615 0.00 0.00 0.00 2.78
4809 7588 5.483583 AGTCTATGAACTGCTTCCTTCTTCT 59.516 40.000 0.00 0.00 0.00 2.85
4810 7589 5.729510 AGTCTATGAACTGCTTCCTTCTTC 58.270 41.667 0.00 0.00 0.00 2.87
4913 7703 4.348656 CAGAAGTCCAAAATCATGATGCG 58.651 43.478 9.46 0.61 0.00 4.73
4934 7724 2.483877 CGCTGCTCTTTAACATCAACCA 59.516 45.455 0.00 0.00 0.00 3.67
4962 7752 7.012138 CAGGGATCAAGAATCTATGAACTGTTG 59.988 40.741 0.00 0.00 34.56 3.33
4963 7753 7.052873 CAGGGATCAAGAATCTATGAACTGTT 58.947 38.462 0.00 0.00 34.56 3.16
5105 7901 5.811399 TTGGATAACTGCCTATGAAAACG 57.189 39.130 0.00 0.00 0.00 3.60
5107 7903 9.420118 ACAATATTGGATAACTGCCTATGAAAA 57.580 29.630 19.37 0.00 0.00 2.29
5152 7969 4.098349 GCCAATGCTCATTCCACAAGATAA 59.902 41.667 0.00 0.00 33.53 1.75
5180 7997 2.310538 GCATTCCAGTCCATTAAGGGG 58.689 52.381 6.28 0.00 38.24 4.79
5181 7998 3.017048 TGCATTCCAGTCCATTAAGGG 57.983 47.619 0.00 0.00 38.24 3.95
5190 8007 3.503748 ACTAAACAGCTTGCATTCCAGTC 59.496 43.478 0.00 0.00 0.00 3.51
5236 8053 8.550376 GGACTTTTACGTGACTGTAAATGTAAA 58.450 33.333 19.98 12.79 45.21 2.01
5237 8054 7.710044 TGGACTTTTACGTGACTGTAAATGTAA 59.290 33.333 19.98 13.87 45.21 2.41
5238 8055 7.208777 TGGACTTTTACGTGACTGTAAATGTA 58.791 34.615 19.98 10.93 45.21 2.29
5239 8056 6.050432 TGGACTTTTACGTGACTGTAAATGT 58.950 36.000 20.02 20.02 46.56 2.71
5240 8057 6.533819 TGGACTTTTACGTGACTGTAAATG 57.466 37.500 16.31 16.31 42.21 2.32
5241 8058 6.932400 TCATGGACTTTTACGTGACTGTAAAT 59.068 34.615 0.00 1.77 42.21 1.40
5244 8061 5.456548 TCATGGACTTTTACGTGACTGTA 57.543 39.130 0.00 0.00 0.00 2.74
5251 8068 3.008049 AGAAGGCTCATGGACTTTTACGT 59.992 43.478 4.09 0.00 44.59 3.57
5255 8072 2.376518 TGGAGAAGGCTCATGGACTTTT 59.623 45.455 4.09 0.00 44.59 2.27
5266 8083 4.711846 AGAAACAAAAGTTTGGAGAAGGCT 59.288 37.500 8.55 0.00 42.34 4.58
5267 8084 5.011090 AGAAACAAAAGTTTGGAGAAGGC 57.989 39.130 8.55 0.00 42.34 4.35
5269 8086 5.965918 GTCGAGAAACAAAAGTTTGGAGAAG 59.034 40.000 8.55 0.00 42.34 2.85
5270 8087 5.163693 GGTCGAGAAACAAAAGTTTGGAGAA 60.164 40.000 8.55 0.00 42.34 2.87
5271 8088 4.334481 GGTCGAGAAACAAAAGTTTGGAGA 59.666 41.667 8.55 0.00 42.34 3.71
5272 8089 4.095782 TGGTCGAGAAACAAAAGTTTGGAG 59.904 41.667 8.55 0.00 42.34 3.86
5274 8091 4.364415 TGGTCGAGAAACAAAAGTTTGG 57.636 40.909 8.55 0.00 42.34 3.28
5276 8093 5.576447 ACATGGTCGAGAAACAAAAGTTT 57.424 34.783 0.00 0.00 0.00 2.66
5279 8108 6.491394 TGTAAACATGGTCGAGAAACAAAAG 58.509 36.000 0.00 0.00 0.00 2.27
5316 8145 1.694150 AGCTGAAGTAACCAGAGTGCA 59.306 47.619 0.00 0.00 33.65 4.57
5317 8146 2.464157 AGCTGAAGTAACCAGAGTGC 57.536 50.000 0.00 0.00 33.65 4.40
5318 8147 4.437239 CCATAGCTGAAGTAACCAGAGTG 58.563 47.826 0.00 0.00 33.65 3.51
5319 8148 3.118592 GCCATAGCTGAAGTAACCAGAGT 60.119 47.826 0.00 0.00 35.50 3.24
5321 8150 2.159099 CGCCATAGCTGAAGTAACCAGA 60.159 50.000 0.00 0.00 36.60 3.86
5322 8151 2.205074 CGCCATAGCTGAAGTAACCAG 58.795 52.381 0.00 0.00 36.60 4.00
5324 8153 0.938008 GCGCCATAGCTGAAGTAACC 59.062 55.000 0.00 0.00 36.60 2.85
5325 8154 1.594862 CTGCGCCATAGCTGAAGTAAC 59.405 52.381 4.18 0.00 38.16 2.50
5326 8155 1.480545 TCTGCGCCATAGCTGAAGTAA 59.519 47.619 4.18 0.00 41.09 2.24
5328 8157 0.467384 ATCTGCGCCATAGCTGAAGT 59.533 50.000 4.18 0.00 45.61 3.01
5329 8158 1.530293 GAATCTGCGCCATAGCTGAAG 59.470 52.381 4.18 0.00 45.61 3.02
5333 8162 1.301244 CCGAATCTGCGCCATAGCT 60.301 57.895 4.18 0.00 38.13 3.32
5356 8278 1.447945 TGATTATGTGGCGTGTGGTG 58.552 50.000 0.00 0.00 0.00 4.17
5357 8279 2.083774 CTTGATTATGTGGCGTGTGGT 58.916 47.619 0.00 0.00 0.00 4.16
5396 8318 7.630242 AACATAATACAGCTGCACTTAATGT 57.370 32.000 15.27 13.07 0.00 2.71
5401 8324 8.739039 TCAATAAAACATAATACAGCTGCACTT 58.261 29.630 15.27 7.43 0.00 3.16
5481 8404 5.150683 TCGTTTGGTTTTCAATATGCTTCG 58.849 37.500 0.00 0.00 34.98 3.79
5513 8436 3.503748 CCCTTGTCTTCTTTTAGCCAGTG 59.496 47.826 0.00 0.00 0.00 3.66
5528 8451 0.107654 CAGTCCCCGATTCCCTTGTC 60.108 60.000 0.00 0.00 0.00 3.18
5530 8453 1.224592 CCAGTCCCCGATTCCCTTG 59.775 63.158 0.00 0.00 0.00 3.61
5545 8468 1.137675 TGATCGCATCCAAGTCTCCAG 59.862 52.381 0.00 0.00 0.00 3.86
5591 8514 2.038952 TCCCCTGATGTCACAAAGTGAG 59.961 50.000 0.00 0.00 43.57 3.51
5655 8578 3.444703 TTGTTTTTGACGGTGGATTGG 57.555 42.857 0.00 0.00 0.00 3.16
5663 8586 3.090952 TGCTGGATTTGTTTTTGACGG 57.909 42.857 0.00 0.00 0.00 4.79
5665 8588 7.887996 TTGATATGCTGGATTTGTTTTTGAC 57.112 32.000 0.00 0.00 0.00 3.18
5672 8595 7.622713 TCCAAATTTTGATATGCTGGATTTGT 58.377 30.769 10.72 0.00 33.46 2.83
5692 8615 8.700051 TGTTTTCTGGATGTTTATTCTTCCAAA 58.300 29.630 0.00 0.00 39.82 3.28
5694 8617 7.831691 TGTTTTCTGGATGTTTATTCTTCCA 57.168 32.000 0.00 0.00 38.66 3.53
5722 8648 0.251608 CCCCTGTGATCCCGGTTTTT 60.252 55.000 0.00 0.00 0.00 1.94
5731 8657 0.107459 GTTCTGAGCCCCCTGTGATC 60.107 60.000 0.00 0.00 0.00 2.92
5736 8663 0.695347 AAGAAGTTCTGAGCCCCCTG 59.305 55.000 6.06 0.00 0.00 4.45
5823 8750 3.888930 ACCTGTTGGTTGTTGATAAGTGG 59.111 43.478 0.00 0.00 46.05 4.00
5829 8756 5.046663 AGTTTTTCACCTGTTGGTTGTTGAT 60.047 36.000 0.00 0.00 46.05 2.57
5830 8757 4.282195 AGTTTTTCACCTGTTGGTTGTTGA 59.718 37.500 0.00 0.00 46.05 3.18
5845 8784 6.003234 TCAACAAGTTTCGTGAGTTTTTCA 57.997 33.333 0.00 0.00 0.00 2.69
5850 8789 4.094442 GGTTCTCAACAAGTTTCGTGAGTT 59.906 41.667 6.96 0.00 0.00 3.01
5867 8806 4.451096 TGAAGTACAAATCGCTTGGTTCTC 59.549 41.667 0.00 0.00 39.56 2.87
5885 8824 8.770438 TTTGTTGCTAGTTTTTGATTTGAAGT 57.230 26.923 0.00 0.00 0.00 3.01
5888 8827 7.332926 TGCTTTTGTTGCTAGTTTTTGATTTGA 59.667 29.630 0.00 0.00 0.00 2.69
5891 8830 7.608308 TTGCTTTTGTTGCTAGTTTTTGATT 57.392 28.000 0.00 0.00 0.00 2.57
5971 9596 0.398381 CTCTCCCTTCTCCCTCCTGG 60.398 65.000 0.00 0.00 0.00 4.45
6002 9661 1.354040 CTACAGCAGCCGTCTTGAAG 58.646 55.000 0.00 0.00 0.00 3.02
6041 9700 4.447762 CCCCACCCCTTCCTCTATAAAATG 60.448 50.000 0.00 0.00 0.00 2.32
6043 9702 3.128049 CCCCACCCCTTCCTCTATAAAA 58.872 50.000 0.00 0.00 0.00 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.