Multiple sequence alignment - TraesCS1A01G213200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G213200 chr1A 100.000 2318 0 0 1 2318 376509853 376512170 0.000000e+00 4281
1 TraesCS1A01G213200 chr1B 96.827 914 28 1 1 914 407302537 407303449 0.000000e+00 1526
2 TraesCS1A01G213200 chr1B 97.021 705 18 3 1615 2318 407303433 407304135 0.000000e+00 1182
3 TraesCS1A01G213200 chr1B 91.292 712 57 5 916 1623 651902369 651903079 0.000000e+00 966
4 TraesCS1A01G213200 chr1B 90.909 704 62 2 916 1618 669071700 669072402 0.000000e+00 944
5 TraesCS1A01G213200 chr1D 93.030 703 47 2 916 1618 492430137 492429437 0.000000e+00 1026
6 TraesCS1A01G213200 chr1D 88.293 615 31 13 1 607 301636753 301637334 0.000000e+00 699
7 TraesCS1A01G213200 chr1D 84.211 171 20 5 1772 1942 301637562 301637725 2.380000e-35 159
8 TraesCS1A01G213200 chr2D 92.919 692 47 2 916 1606 546411482 546412172 0.000000e+00 1005
9 TraesCS1A01G213200 chr4D 92.057 705 54 2 916 1618 483619853 483619149 0.000000e+00 990
10 TraesCS1A01G213200 chr3A 91.903 704 55 2 916 1618 100864363 100863661 0.000000e+00 983
11 TraesCS1A01G213200 chr3A 91.274 722 57 6 916 1634 703807562 703806844 0.000000e+00 979
12 TraesCS1A01G213200 chr3A 91.501 706 56 4 916 1619 127190144 127190847 0.000000e+00 968
13 TraesCS1A01G213200 chr2B 90.730 712 63 3 916 1625 669239752 669239042 0.000000e+00 946


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G213200 chr1A 376509853 376512170 2317 False 4281 4281 100.000 1 2318 1 chr1A.!!$F1 2317
1 TraesCS1A01G213200 chr1B 407302537 407304135 1598 False 1354 1526 96.924 1 2318 2 chr1B.!!$F3 2317
2 TraesCS1A01G213200 chr1B 651902369 651903079 710 False 966 966 91.292 916 1623 1 chr1B.!!$F1 707
3 TraesCS1A01G213200 chr1B 669071700 669072402 702 False 944 944 90.909 916 1618 1 chr1B.!!$F2 702
4 TraesCS1A01G213200 chr1D 492429437 492430137 700 True 1026 1026 93.030 916 1618 1 chr1D.!!$R1 702
5 TraesCS1A01G213200 chr1D 301636753 301637725 972 False 429 699 86.252 1 1942 2 chr1D.!!$F1 1941
6 TraesCS1A01G213200 chr2D 546411482 546412172 690 False 1005 1005 92.919 916 1606 1 chr2D.!!$F1 690
7 TraesCS1A01G213200 chr4D 483619149 483619853 704 True 990 990 92.057 916 1618 1 chr4D.!!$R1 702
8 TraesCS1A01G213200 chr3A 100863661 100864363 702 True 983 983 91.903 916 1618 1 chr3A.!!$R1 702
9 TraesCS1A01G213200 chr3A 703806844 703807562 718 True 979 979 91.274 916 1634 1 chr3A.!!$R2 718
10 TraesCS1A01G213200 chr3A 127190144 127190847 703 False 968 968 91.501 916 1619 1 chr3A.!!$F1 703
11 TraesCS1A01G213200 chr2B 669239042 669239752 710 True 946 946 90.730 916 1625 1 chr2B.!!$R1 709

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
66 67 3.263489 TTGAACCACAACACGGAAGTA 57.737 42.857 0.0 0.0 36.56 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1801 2280 0.03759 ATTGCCGTTGGTAGCTGGAA 59.962 50.0 0.0 0.0 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 3.263489 TTGAACCACAACACGGAAGTA 57.737 42.857 0.00 0.00 36.56 2.24
376 377 8.864087 AGAGTCATTGCTCAAGACATATATACA 58.136 33.333 9.67 0.00 37.94 2.29
565 574 7.063898 AGTCATCTGATCAAATACACAAGTTCG 59.936 37.037 0.00 0.00 0.00 3.95
569 578 6.873605 TCTGATCAAATACACAAGTTCGACAT 59.126 34.615 0.00 0.00 0.00 3.06
615 690 8.506168 TGAAATTTTCTTCAGAACTACACACT 57.494 30.769 10.33 0.00 33.13 3.55
695 771 7.035612 GTCCCCAATCACTATTTTTGACAATC 58.964 38.462 0.00 0.00 0.00 2.67
843 921 5.871524 TCATGACAGTAGAGCAAAGTGATTC 59.128 40.000 0.00 0.00 0.00 2.52
914 992 9.606631 ATTGAATCTAAGAACAAGATCAGTACC 57.393 33.333 0.00 0.00 32.48 3.34
1133 1608 6.036246 GAACAAATCCAGTTTTCAAAGTGC 57.964 37.500 2.04 0.00 37.88 4.40
1154 1629 2.301296 CCATGCCTACAGATCCTACTGG 59.699 54.545 0.00 0.00 41.59 4.00
1188 1663 5.768164 TCTTGTTTGTTCCCTAATTGACTCC 59.232 40.000 0.00 0.00 0.00 3.85
1245 1720 0.817654 TGCATCAGGTGTCTAGACGG 59.182 55.000 17.85 7.70 0.00 4.79
1278 1753 2.490115 GACTCGTGATGTCTTCAGAGGT 59.510 50.000 14.20 4.69 35.58 3.85
1311 1786 1.493950 CGCCGCATGTGAGAAGGATC 61.494 60.000 8.11 0.00 0.00 3.36
1382 1857 6.727215 TGTTAATTTGGTTGTCGTCCTTTAC 58.273 36.000 0.00 0.00 0.00 2.01
1420 1895 1.077334 AGGTAGTGTGACACTAGGCCT 59.923 52.381 24.49 23.23 45.88 5.19
1425 1900 2.706190 AGTGTGACACTAGGCCTTTTCT 59.294 45.455 17.91 0.00 43.46 2.52
1499 1974 3.561725 GGTGTGATGATTAGGCTTGCTAC 59.438 47.826 0.00 0.00 0.00 3.58
1565 2043 3.118956 TGGTTTGTTGCCCTGTAAACAAG 60.119 43.478 0.00 0.00 44.57 3.16
1646 2125 6.836527 AGATCAGTACAAGGCTAAGTCATACT 59.163 38.462 0.00 0.00 0.00 2.12
1648 2127 8.713708 ATCAGTACAAGGCTAAGTCATACTAT 57.286 34.615 0.00 0.00 0.00 2.12
1649 2128 7.941919 TCAGTACAAGGCTAAGTCATACTATG 58.058 38.462 0.00 0.00 0.00 2.23
1650 2129 6.642950 CAGTACAAGGCTAAGTCATACTATGC 59.357 42.308 0.00 0.00 0.00 3.14
1651 2130 5.614324 ACAAGGCTAAGTCATACTATGCA 57.386 39.130 0.00 0.00 31.27 3.96
1652 2131 5.989477 ACAAGGCTAAGTCATACTATGCAA 58.011 37.500 0.00 0.00 31.27 4.08
1653 2132 5.817816 ACAAGGCTAAGTCATACTATGCAAC 59.182 40.000 0.00 0.00 31.27 4.17
1654 2133 5.878406 AGGCTAAGTCATACTATGCAACT 57.122 39.130 0.00 0.00 31.27 3.16
1655 2134 6.240549 AGGCTAAGTCATACTATGCAACTT 57.759 37.500 0.00 0.00 33.54 2.66
1656 2135 7.361457 AGGCTAAGTCATACTATGCAACTTA 57.639 36.000 0.00 0.00 31.98 2.24
1657 2136 7.792032 AGGCTAAGTCATACTATGCAACTTAA 58.208 34.615 6.42 0.00 32.56 1.85
1658 2137 7.711339 AGGCTAAGTCATACTATGCAACTTAAC 59.289 37.037 6.42 2.86 32.56 2.01
1659 2138 7.494625 GGCTAAGTCATACTATGCAACTTAACA 59.505 37.037 6.42 0.00 32.56 2.41
1660 2139 8.879759 GCTAAGTCATACTATGCAACTTAACAA 58.120 33.333 6.42 0.00 32.56 2.83
1662 2141 7.849804 AGTCATACTATGCAACTTAACAAGG 57.150 36.000 0.00 0.00 0.00 3.61
1663 2142 7.620880 AGTCATACTATGCAACTTAACAAGGA 58.379 34.615 0.00 0.00 0.00 3.36
1664 2143 8.100791 AGTCATACTATGCAACTTAACAAGGAA 58.899 33.333 0.00 0.00 0.00 3.36
1665 2144 8.726988 GTCATACTATGCAACTTAACAAGGAAA 58.273 33.333 0.00 0.00 0.00 3.13
1666 2145 9.290988 TCATACTATGCAACTTAACAAGGAAAA 57.709 29.630 0.00 0.00 0.00 2.29
1667 2146 9.341899 CATACTATGCAACTTAACAAGGAAAAC 57.658 33.333 0.00 0.00 0.00 2.43
1668 2147 7.341445 ACTATGCAACTTAACAAGGAAAACA 57.659 32.000 0.00 0.00 0.00 2.83
1669 2148 7.425606 ACTATGCAACTTAACAAGGAAAACAG 58.574 34.615 0.00 0.00 0.00 3.16
1670 2149 5.004922 TGCAACTTAACAAGGAAAACAGG 57.995 39.130 0.00 0.00 0.00 4.00
1671 2150 4.464597 TGCAACTTAACAAGGAAAACAGGT 59.535 37.500 0.00 0.00 0.00 4.00
1672 2151 5.652891 TGCAACTTAACAAGGAAAACAGGTA 59.347 36.000 0.00 0.00 0.00 3.08
1673 2152 5.975344 GCAACTTAACAAGGAAAACAGGTAC 59.025 40.000 0.00 0.00 0.00 3.34
1674 2153 6.404954 GCAACTTAACAAGGAAAACAGGTACA 60.405 38.462 0.00 0.00 0.00 2.90
1675 2154 7.540299 CAACTTAACAAGGAAAACAGGTACAA 58.460 34.615 0.00 0.00 0.00 2.41
1676 2155 7.891498 ACTTAACAAGGAAAACAGGTACAAT 57.109 32.000 0.00 0.00 0.00 2.71
1677 2156 8.983702 ACTTAACAAGGAAAACAGGTACAATA 57.016 30.769 0.00 0.00 0.00 1.90
1678 2157 9.411189 ACTTAACAAGGAAAACAGGTACAATAA 57.589 29.630 0.00 0.00 0.00 1.40
1681 2160 8.936070 AACAAGGAAAACAGGTACAATAAAAC 57.064 30.769 0.00 0.00 0.00 2.43
1682 2161 8.068892 ACAAGGAAAACAGGTACAATAAAACA 57.931 30.769 0.00 0.00 0.00 2.83
1683 2162 8.532819 ACAAGGAAAACAGGTACAATAAAACAA 58.467 29.630 0.00 0.00 0.00 2.83
1684 2163 8.813282 CAAGGAAAACAGGTACAATAAAACAAC 58.187 33.333 0.00 0.00 0.00 3.32
1685 2164 7.494211 AGGAAAACAGGTACAATAAAACAACC 58.506 34.615 0.00 0.00 0.00 3.77
1686 2165 6.418523 GGAAAACAGGTACAATAAAACAACCG 59.581 38.462 0.00 0.00 35.32 4.44
1687 2166 6.453926 AAACAGGTACAATAAAACAACCGT 57.546 33.333 0.00 0.00 35.32 4.83
1688 2167 5.427036 ACAGGTACAATAAAACAACCGTG 57.573 39.130 0.00 0.00 35.32 4.94
1689 2168 4.883006 ACAGGTACAATAAAACAACCGTGT 59.117 37.500 0.00 0.00 40.75 4.49
1690 2169 5.209240 CAGGTACAATAAAACAACCGTGTG 58.791 41.667 0.00 0.00 38.27 3.82
1691 2170 5.007823 CAGGTACAATAAAACAACCGTGTGA 59.992 40.000 0.00 0.00 38.27 3.58
1692 2171 5.007921 AGGTACAATAAAACAACCGTGTGAC 59.992 40.000 0.00 0.00 38.27 3.67
1693 2172 4.966965 ACAATAAAACAACCGTGTGACA 57.033 36.364 0.00 0.00 38.27 3.58
1694 2173 4.915704 ACAATAAAACAACCGTGTGACAG 58.084 39.130 0.00 0.00 38.27 3.51
1695 2174 3.619233 ATAAAACAACCGTGTGACAGC 57.381 42.857 0.00 0.00 38.27 4.40
1696 2175 0.454196 AAAACAACCGTGTGACAGCC 59.546 50.000 0.00 0.00 38.27 4.85
1697 2176 0.393808 AAACAACCGTGTGACAGCCT 60.394 50.000 0.00 0.00 38.27 4.58
1698 2177 0.393808 AACAACCGTGTGACAGCCTT 60.394 50.000 0.00 0.00 38.27 4.35
1699 2178 0.466543 ACAACCGTGTGACAGCCTTA 59.533 50.000 0.00 0.00 36.31 2.69
1700 2179 0.865769 CAACCGTGTGACAGCCTTAC 59.134 55.000 0.00 0.00 0.00 2.34
1701 2180 0.599204 AACCGTGTGACAGCCTTACG 60.599 55.000 0.00 0.00 34.78 3.18
1702 2181 2.380410 CCGTGTGACAGCCTTACGC 61.380 63.158 0.00 0.00 33.76 4.42
1703 2182 1.663388 CGTGTGACAGCCTTACGCA 60.663 57.895 0.00 0.00 41.38 5.24
1704 2183 1.014044 CGTGTGACAGCCTTACGCAT 61.014 55.000 0.00 0.00 41.38 4.73
1705 2184 0.721718 GTGTGACAGCCTTACGCATC 59.278 55.000 0.00 0.00 41.38 3.91
1706 2185 0.320050 TGTGACAGCCTTACGCATCA 59.680 50.000 0.00 0.00 41.38 3.07
1707 2186 1.002366 GTGACAGCCTTACGCATCAG 58.998 55.000 0.00 0.00 41.38 2.90
1708 2187 0.894835 TGACAGCCTTACGCATCAGA 59.105 50.000 0.00 0.00 41.38 3.27
1709 2188 1.275010 TGACAGCCTTACGCATCAGAA 59.725 47.619 0.00 0.00 41.38 3.02
1710 2189 1.929836 GACAGCCTTACGCATCAGAAG 59.070 52.381 0.00 0.00 41.38 2.85
1711 2190 1.276421 ACAGCCTTACGCATCAGAAGT 59.724 47.619 0.00 0.00 41.38 3.01
1712 2191 2.289694 ACAGCCTTACGCATCAGAAGTT 60.290 45.455 0.00 0.00 41.38 2.66
1713 2192 2.744202 CAGCCTTACGCATCAGAAGTTT 59.256 45.455 0.00 0.00 41.38 2.66
1714 2193 3.932710 CAGCCTTACGCATCAGAAGTTTA 59.067 43.478 0.00 0.00 41.38 2.01
1715 2194 4.391830 CAGCCTTACGCATCAGAAGTTTAA 59.608 41.667 0.00 0.00 41.38 1.52
1716 2195 5.001232 AGCCTTACGCATCAGAAGTTTAAA 58.999 37.500 0.00 0.00 41.38 1.52
1717 2196 5.472137 AGCCTTACGCATCAGAAGTTTAAAA 59.528 36.000 0.00 0.00 41.38 1.52
1718 2197 6.151144 AGCCTTACGCATCAGAAGTTTAAAAT 59.849 34.615 0.00 0.00 41.38 1.82
1719 2198 7.335924 AGCCTTACGCATCAGAAGTTTAAAATA 59.664 33.333 0.00 0.00 41.38 1.40
1720 2199 7.966204 GCCTTACGCATCAGAAGTTTAAAATAA 59.034 33.333 0.00 0.00 37.47 1.40
1723 2202 9.781834 TTACGCATCAGAAGTTTAAAATAATGG 57.218 29.630 0.00 0.00 0.00 3.16
1724 2203 7.826690 ACGCATCAGAAGTTTAAAATAATGGT 58.173 30.769 0.00 0.00 0.00 3.55
1725 2204 8.303876 ACGCATCAGAAGTTTAAAATAATGGTT 58.696 29.630 0.00 0.00 0.00 3.67
1726 2205 8.798153 CGCATCAGAAGTTTAAAATAATGGTTC 58.202 33.333 0.00 0.00 0.00 3.62
1727 2206 9.087424 GCATCAGAAGTTTAAAATAATGGTTCC 57.913 33.333 0.00 0.00 0.00 3.62
1728 2207 9.586435 CATCAGAAGTTTAAAATAATGGTTCCC 57.414 33.333 0.00 0.00 0.00 3.97
1729 2208 8.713708 TCAGAAGTTTAAAATAATGGTTCCCA 57.286 30.769 0.00 0.00 38.19 4.37
1730 2209 9.148879 TCAGAAGTTTAAAATAATGGTTCCCAA 57.851 29.630 0.00 0.00 36.95 4.12
1731 2210 9.771534 CAGAAGTTTAAAATAATGGTTCCCAAA 57.228 29.630 0.00 0.00 36.95 3.28
1735 2214 9.907229 AGTTTAAAATAATGGTTCCCAAAAACA 57.093 25.926 0.00 0.00 36.95 2.83
1740 2219 9.853177 AAAATAATGGTTCCCAAAAACAATACA 57.147 25.926 0.00 0.00 36.95 2.29
1742 2221 9.447157 AATAATGGTTCCCAAAAACAATACATG 57.553 29.630 0.00 0.00 36.95 3.21
1743 2222 5.878406 TGGTTCCCAAAAACAATACATGT 57.122 34.783 2.69 2.69 46.82 3.21
1744 2223 6.978674 TGGTTCCCAAAAACAATACATGTA 57.021 33.333 8.27 8.27 42.99 2.29
1745 2224 7.361457 TGGTTCCCAAAAACAATACATGTAA 57.639 32.000 10.14 0.00 42.99 2.41
1746 2225 7.792032 TGGTTCCCAAAAACAATACATGTAAA 58.208 30.769 10.14 0.00 42.99 2.01
1747 2226 8.432805 TGGTTCCCAAAAACAATACATGTAAAT 58.567 29.630 10.14 0.00 42.99 1.40
1748 2227 9.930693 GGTTCCCAAAAACAATACATGTAAATA 57.069 29.630 10.14 0.00 42.99 1.40
1758 2237 9.959721 AACAATACATGTAAATAACTCTGAGGT 57.040 29.630 10.14 4.80 42.99 3.85
1759 2238 9.959721 ACAATACATGTAAATAACTCTGAGGTT 57.040 29.630 10.14 3.98 41.63 3.50
1763 2242 8.918202 ACATGTAAATAACTCTGAGGTTTTGA 57.082 30.769 9.85 0.00 0.00 2.69
1764 2243 9.349713 ACATGTAAATAACTCTGAGGTTTTGAA 57.650 29.630 9.85 0.00 0.00 2.69
1767 2246 8.296713 TGTAAATAACTCTGAGGTTTTGAATGC 58.703 33.333 9.85 0.00 0.00 3.56
1768 2247 5.904362 ATAACTCTGAGGTTTTGAATGCC 57.096 39.130 9.85 0.00 0.00 4.40
1769 2248 2.519013 ACTCTGAGGTTTTGAATGCCC 58.481 47.619 9.85 0.00 0.00 5.36
1770 2249 2.158475 ACTCTGAGGTTTTGAATGCCCA 60.158 45.455 9.85 0.00 0.00 5.36
1771 2250 2.892852 CTCTGAGGTTTTGAATGCCCAA 59.107 45.455 0.00 0.00 0.00 4.12
1772 2251 3.303938 TCTGAGGTTTTGAATGCCCAAA 58.696 40.909 0.00 0.00 34.56 3.28
1773 2252 3.069443 TCTGAGGTTTTGAATGCCCAAAC 59.931 43.478 0.00 0.00 35.95 2.93
1774 2253 2.103941 TGAGGTTTTGAATGCCCAAACC 59.896 45.455 6.54 6.54 35.95 3.27
1775 2254 2.103941 GAGGTTTTGAATGCCCAAACCA 59.896 45.455 14.43 0.00 35.95 3.67
1776 2255 2.158827 AGGTTTTGAATGCCCAAACCAC 60.159 45.455 14.43 0.00 35.95 4.16
1777 2256 2.158827 GGTTTTGAATGCCCAAACCACT 60.159 45.455 9.04 0.00 35.95 4.00
1778 2257 3.070302 GGTTTTGAATGCCCAAACCACTA 59.930 43.478 9.04 0.00 35.95 2.74
1779 2258 4.306600 GTTTTGAATGCCCAAACCACTAG 58.693 43.478 0.00 0.00 35.95 2.57
1780 2259 3.517296 TTGAATGCCCAAACCACTAGA 57.483 42.857 0.00 0.00 0.00 2.43
1781 2260 3.737559 TGAATGCCCAAACCACTAGAT 57.262 42.857 0.00 0.00 0.00 1.98
1782 2261 3.355378 TGAATGCCCAAACCACTAGATG 58.645 45.455 0.00 0.00 0.00 2.90
1783 2262 3.245229 TGAATGCCCAAACCACTAGATGT 60.245 43.478 0.00 0.00 0.00 3.06
1784 2263 2.969821 TGCCCAAACCACTAGATGTT 57.030 45.000 0.00 0.00 0.00 2.71
1785 2264 3.237268 TGCCCAAACCACTAGATGTTT 57.763 42.857 0.00 2.60 35.15 2.83
1786 2265 3.571590 TGCCCAAACCACTAGATGTTTT 58.428 40.909 10.34 0.00 32.60 2.43
1787 2266 3.964031 TGCCCAAACCACTAGATGTTTTT 59.036 39.130 10.34 0.14 32.60 1.94
1788 2267 4.038642 TGCCCAAACCACTAGATGTTTTTC 59.961 41.667 10.34 5.41 32.60 2.29
1789 2268 4.038642 GCCCAAACCACTAGATGTTTTTCA 59.961 41.667 10.34 0.00 32.60 2.69
1790 2269 5.279456 GCCCAAACCACTAGATGTTTTTCAT 60.279 40.000 10.34 0.00 39.77 2.57
1791 2270 6.158598 CCCAAACCACTAGATGTTTTTCATG 58.841 40.000 10.34 0.00 36.83 3.07
1792 2271 5.634859 CCAAACCACTAGATGTTTTTCATGC 59.365 40.000 10.34 0.00 36.83 4.06
1793 2272 6.215121 CAAACCACTAGATGTTTTTCATGCA 58.785 36.000 10.34 0.00 36.83 3.96
1794 2273 6.594788 AACCACTAGATGTTTTTCATGCAT 57.405 33.333 0.00 0.00 36.83 3.96
1795 2274 7.701539 AACCACTAGATGTTTTTCATGCATA 57.298 32.000 0.00 0.00 36.83 3.14
1796 2275 7.325660 ACCACTAGATGTTTTTCATGCATAG 57.674 36.000 0.00 0.00 36.83 2.23
1797 2276 6.183360 ACCACTAGATGTTTTTCATGCATAGC 60.183 38.462 0.00 0.00 36.83 2.97
1798 2277 5.905733 CACTAGATGTTTTTCATGCATAGCG 59.094 40.000 0.00 0.00 36.83 4.26
1799 2278 4.297299 AGATGTTTTTCATGCATAGCGG 57.703 40.909 0.00 0.00 36.83 5.52
1800 2279 2.276472 TGTTTTTCATGCATAGCGGC 57.724 45.000 0.00 0.00 0.00 6.53
1801 2280 1.818060 TGTTTTTCATGCATAGCGGCT 59.182 42.857 7.98 7.98 34.04 5.52
1802 2281 2.230992 TGTTTTTCATGCATAGCGGCTT 59.769 40.909 8.26 0.00 34.04 4.35
1803 2282 2.849880 TTTTCATGCATAGCGGCTTC 57.150 45.000 8.26 0.00 34.04 3.86
1804 2283 1.024271 TTTCATGCATAGCGGCTTCC 58.976 50.000 8.26 0.00 34.04 3.46
1805 2284 0.107263 TTCATGCATAGCGGCTTCCA 60.107 50.000 8.26 3.48 34.04 3.53
1806 2285 0.533531 TCATGCATAGCGGCTTCCAG 60.534 55.000 8.26 0.00 34.04 3.86
1807 2286 1.895707 ATGCATAGCGGCTTCCAGC 60.896 57.895 8.26 8.20 41.46 4.85
1808 2287 2.203126 GCATAGCGGCTTCCAGCT 60.203 61.111 8.26 7.21 46.53 4.24
1810 2289 1.224722 GCATAGCGGCTTCCAGCTAC 61.225 60.000 8.26 0.00 46.99 3.58
1811 2290 0.601311 CATAGCGGCTTCCAGCTACC 60.601 60.000 8.26 0.00 46.99 3.18
1812 2291 1.048724 ATAGCGGCTTCCAGCTACCA 61.049 55.000 8.26 0.00 46.99 3.25
1813 2292 1.261938 TAGCGGCTTCCAGCTACCAA 61.262 55.000 8.26 0.00 44.15 3.67
1814 2293 2.399356 GCGGCTTCCAGCTACCAAC 61.399 63.158 0.00 0.00 41.99 3.77
1815 2294 2.100631 CGGCTTCCAGCTACCAACG 61.101 63.158 0.00 0.00 41.99 4.10
1816 2295 1.745489 GGCTTCCAGCTACCAACGG 60.745 63.158 0.00 0.00 41.99 4.44
1817 2296 2.399356 GCTTCCAGCTACCAACGGC 61.399 63.158 0.00 0.00 38.45 5.68
1818 2297 1.003839 CTTCCAGCTACCAACGGCA 60.004 57.895 0.00 0.00 0.00 5.69
1819 2298 0.605319 CTTCCAGCTACCAACGGCAA 60.605 55.000 0.00 0.00 0.00 4.52
1820 2299 0.037590 TTCCAGCTACCAACGGCAAT 59.962 50.000 0.00 0.00 0.00 3.56
1821 2300 0.037590 TCCAGCTACCAACGGCAATT 59.962 50.000 0.00 0.00 0.00 2.32
1822 2301 0.451783 CCAGCTACCAACGGCAATTC 59.548 55.000 0.00 0.00 0.00 2.17
1823 2302 1.453155 CAGCTACCAACGGCAATTCT 58.547 50.000 0.00 0.00 0.00 2.40
1824 2303 1.131126 CAGCTACCAACGGCAATTCTG 59.869 52.381 0.00 0.00 0.00 3.02
1825 2304 1.165270 GCTACCAACGGCAATTCTGT 58.835 50.000 0.00 0.00 35.31 3.41
1826 2305 1.539827 GCTACCAACGGCAATTCTGTT 59.460 47.619 0.00 0.00 44.80 3.16
1827 2306 2.030274 GCTACCAACGGCAATTCTGTTT 60.030 45.455 0.00 0.00 42.17 2.83
1828 2307 2.507339 ACCAACGGCAATTCTGTTTG 57.493 45.000 0.00 1.32 42.17 2.93
1829 2308 1.754226 ACCAACGGCAATTCTGTTTGT 59.246 42.857 0.00 1.80 42.17 2.83
1830 2309 2.167487 ACCAACGGCAATTCTGTTTGTT 59.833 40.909 0.00 0.00 42.17 2.83
1831 2310 3.194062 CCAACGGCAATTCTGTTTGTTT 58.806 40.909 0.00 0.00 42.17 2.83
1832 2311 3.620821 CCAACGGCAATTCTGTTTGTTTT 59.379 39.130 0.00 0.00 42.17 2.43
1833 2312 4.260172 CCAACGGCAATTCTGTTTGTTTTC 60.260 41.667 0.00 0.00 42.17 2.29
1834 2313 3.453424 ACGGCAATTCTGTTTGTTTTCC 58.547 40.909 0.00 0.00 0.00 3.13
1835 2314 3.132111 ACGGCAATTCTGTTTGTTTTCCT 59.868 39.130 0.00 0.00 0.00 3.36
1836 2315 4.119136 CGGCAATTCTGTTTGTTTTCCTT 58.881 39.130 0.00 0.00 0.00 3.36
1837 2316 5.163499 ACGGCAATTCTGTTTGTTTTCCTTA 60.163 36.000 0.00 0.00 0.00 2.69
1838 2317 5.925969 CGGCAATTCTGTTTGTTTTCCTTAT 59.074 36.000 0.00 0.00 0.00 1.73
1839 2318 6.089417 CGGCAATTCTGTTTGTTTTCCTTATC 59.911 38.462 0.00 0.00 0.00 1.75
1840 2319 6.928492 GGCAATTCTGTTTGTTTTCCTTATCA 59.072 34.615 0.00 0.00 0.00 2.15
1841 2320 7.603784 GGCAATTCTGTTTGTTTTCCTTATCAT 59.396 33.333 0.00 0.00 0.00 2.45
1842 2321 8.992073 GCAATTCTGTTTGTTTTCCTTATCATT 58.008 29.630 0.00 0.00 0.00 2.57
1846 2325 9.528018 TTCTGTTTGTTTTCCTTATCATTCAAC 57.472 29.630 0.00 0.00 0.00 3.18
1847 2326 8.141268 TCTGTTTGTTTTCCTTATCATTCAACC 58.859 33.333 0.00 0.00 0.00 3.77
1848 2327 8.017418 TGTTTGTTTTCCTTATCATTCAACCT 57.983 30.769 0.00 0.00 0.00 3.50
1849 2328 7.925483 TGTTTGTTTTCCTTATCATTCAACCTG 59.075 33.333 0.00 0.00 0.00 4.00
1850 2329 6.024552 TGTTTTCCTTATCATTCAACCTGC 57.975 37.500 0.00 0.00 0.00 4.85
1851 2330 5.047377 TGTTTTCCTTATCATTCAACCTGCC 60.047 40.000 0.00 0.00 0.00 4.85
1852 2331 3.297134 TCCTTATCATTCAACCTGCCC 57.703 47.619 0.00 0.00 0.00 5.36
1853 2332 2.091885 TCCTTATCATTCAACCTGCCCC 60.092 50.000 0.00 0.00 0.00 5.80
1854 2333 2.310538 CTTATCATTCAACCTGCCCCC 58.689 52.381 0.00 0.00 0.00 5.40
1855 2334 1.303898 TATCATTCAACCTGCCCCCA 58.696 50.000 0.00 0.00 0.00 4.96
1856 2335 0.413037 ATCATTCAACCTGCCCCCAA 59.587 50.000 0.00 0.00 0.00 4.12
1857 2336 0.541764 TCATTCAACCTGCCCCCAAC 60.542 55.000 0.00 0.00 0.00 3.77
1858 2337 0.831288 CATTCAACCTGCCCCCAACA 60.831 55.000 0.00 0.00 0.00 3.33
1859 2338 0.831711 ATTCAACCTGCCCCCAACAC 60.832 55.000 0.00 0.00 0.00 3.32
1860 2339 2.917227 CAACCTGCCCCCAACACC 60.917 66.667 0.00 0.00 0.00 4.16
1861 2340 4.233558 AACCTGCCCCCAACACCC 62.234 66.667 0.00 0.00 0.00 4.61
1868 2347 2.946650 CCCCAACACCCCCAGGAT 60.947 66.667 0.00 0.00 36.73 3.24
1869 2348 1.621205 CCCCAACACCCCCAGGATA 60.621 63.158 0.00 0.00 36.73 2.59
1870 2349 1.218439 CCCCAACACCCCCAGGATAA 61.218 60.000 0.00 0.00 36.73 1.75
1871 2350 0.258774 CCCAACACCCCCAGGATAAG 59.741 60.000 0.00 0.00 36.73 1.73
1872 2351 1.295020 CCAACACCCCCAGGATAAGA 58.705 55.000 0.00 0.00 36.73 2.10
1873 2352 1.638589 CCAACACCCCCAGGATAAGAA 59.361 52.381 0.00 0.00 36.73 2.52
1874 2353 2.620627 CCAACACCCCCAGGATAAGAAC 60.621 54.545 0.00 0.00 36.73 3.01
1875 2354 2.308866 CAACACCCCCAGGATAAGAACT 59.691 50.000 0.00 0.00 36.73 3.01
1876 2355 3.502051 ACACCCCCAGGATAAGAACTA 57.498 47.619 0.00 0.00 36.73 2.24
1877 2356 3.810623 ACACCCCCAGGATAAGAACTAA 58.189 45.455 0.00 0.00 36.73 2.24
1878 2357 3.780850 ACACCCCCAGGATAAGAACTAAG 59.219 47.826 0.00 0.00 36.73 2.18
1879 2358 4.037927 CACCCCCAGGATAAGAACTAAGA 58.962 47.826 0.00 0.00 36.73 2.10
1880 2359 4.473559 CACCCCCAGGATAAGAACTAAGAA 59.526 45.833 0.00 0.00 36.73 2.52
1881 2360 5.045140 CACCCCCAGGATAAGAACTAAGAAA 60.045 44.000 0.00 0.00 36.73 2.52
1882 2361 5.045066 ACCCCCAGGATAAGAACTAAGAAAC 60.045 44.000 0.00 0.00 36.73 2.78
1883 2362 5.437946 CCCCAGGATAAGAACTAAGAAACC 58.562 45.833 0.00 0.00 0.00 3.27
1884 2363 5.045140 CCCCAGGATAAGAACTAAGAAACCA 60.045 44.000 0.00 0.00 0.00 3.67
1885 2364 5.880887 CCCAGGATAAGAACTAAGAAACCAC 59.119 44.000 0.00 0.00 0.00 4.16
1886 2365 6.296489 CCCAGGATAAGAACTAAGAAACCACT 60.296 42.308 0.00 0.00 0.00 4.00
1887 2366 7.168905 CCAGGATAAGAACTAAGAAACCACTT 58.831 38.462 0.00 0.00 0.00 3.16
1888 2367 7.665974 CCAGGATAAGAACTAAGAAACCACTTT 59.334 37.037 0.00 0.00 0.00 2.66
1889 2368 9.067986 CAGGATAAGAACTAAGAAACCACTTTT 57.932 33.333 0.00 0.00 0.00 2.27
1894 2373 7.563888 AGAACTAAGAAACCACTTTTACACC 57.436 36.000 0.00 0.00 0.00 4.16
1895 2374 7.344134 AGAACTAAGAAACCACTTTTACACCT 58.656 34.615 0.00 0.00 0.00 4.00
1896 2375 8.488668 AGAACTAAGAAACCACTTTTACACCTA 58.511 33.333 0.00 0.00 0.00 3.08
1897 2376 8.672823 AACTAAGAAACCACTTTTACACCTAG 57.327 34.615 0.00 0.00 0.00 3.02
1898 2377 6.709397 ACTAAGAAACCACTTTTACACCTAGC 59.291 38.462 0.00 0.00 0.00 3.42
1899 2378 5.306114 AGAAACCACTTTTACACCTAGCT 57.694 39.130 0.00 0.00 0.00 3.32
1900 2379 6.429521 AGAAACCACTTTTACACCTAGCTA 57.570 37.500 0.00 0.00 0.00 3.32
1901 2380 6.834107 AGAAACCACTTTTACACCTAGCTAA 58.166 36.000 0.00 0.00 0.00 3.09
1902 2381 7.459234 AGAAACCACTTTTACACCTAGCTAAT 58.541 34.615 0.00 0.00 0.00 1.73
1903 2382 7.942894 AGAAACCACTTTTACACCTAGCTAATT 59.057 33.333 0.00 0.00 0.00 1.40
1904 2383 8.473358 AAACCACTTTTACACCTAGCTAATTT 57.527 30.769 0.00 0.00 0.00 1.82
1905 2384 7.683437 ACCACTTTTACACCTAGCTAATTTC 57.317 36.000 0.00 0.00 0.00 2.17
1906 2385 7.459234 ACCACTTTTACACCTAGCTAATTTCT 58.541 34.615 0.00 0.00 0.00 2.52
1907 2386 7.942894 ACCACTTTTACACCTAGCTAATTTCTT 59.057 33.333 0.00 0.00 0.00 2.52
1908 2387 8.793592 CCACTTTTACACCTAGCTAATTTCTTT 58.206 33.333 0.00 0.00 0.00 2.52
1912 2391 9.974980 TTTTACACCTAGCTAATTTCTTTTTGG 57.025 29.630 0.00 0.00 0.00 3.28
1913 2392 6.025749 ACACCTAGCTAATTTCTTTTTGGC 57.974 37.500 0.00 0.00 0.00 4.52
1914 2393 5.775195 ACACCTAGCTAATTTCTTTTTGGCT 59.225 36.000 0.00 0.14 42.58 4.75
1915 2394 6.267699 ACACCTAGCTAATTTCTTTTTGGCTT 59.732 34.615 0.00 0.00 40.72 4.35
1916 2395 7.154656 CACCTAGCTAATTTCTTTTTGGCTTT 58.845 34.615 0.00 0.00 40.72 3.51
1917 2396 7.329471 CACCTAGCTAATTTCTTTTTGGCTTTC 59.671 37.037 0.00 0.00 40.72 2.62
1918 2397 7.233553 ACCTAGCTAATTTCTTTTTGGCTTTCT 59.766 33.333 0.00 0.00 40.72 2.52
1919 2398 8.739972 CCTAGCTAATTTCTTTTTGGCTTTCTA 58.260 33.333 0.00 0.00 40.72 2.10
1929 2408 9.869757 TTCTTTTTGGCTTTCTAAATAATAGGC 57.130 29.630 0.00 0.00 0.00 3.93
1930 2409 9.255029 TCTTTTTGGCTTTCTAAATAATAGGCT 57.745 29.630 0.00 0.00 33.10 4.58
1933 2412 9.695155 TTTTGGCTTTCTAAATAATAGGCTAGT 57.305 29.630 0.00 0.00 33.10 2.57
1934 2413 8.677148 TTGGCTTTCTAAATAATAGGCTAGTG 57.323 34.615 4.46 0.00 33.10 2.74
1935 2414 7.224297 TGGCTTTCTAAATAATAGGCTAGTGG 58.776 38.462 4.46 0.00 33.10 4.00
1936 2415 7.147373 TGGCTTTCTAAATAATAGGCTAGTGGT 60.147 37.037 4.46 0.00 33.10 4.16
1937 2416 7.388224 GGCTTTCTAAATAATAGGCTAGTGGTC 59.612 40.741 4.46 0.00 0.00 4.02
1938 2417 8.151596 GCTTTCTAAATAATAGGCTAGTGGTCT 58.848 37.037 4.46 0.00 0.00 3.85
1941 2420 8.191534 TCTAAATAATAGGCTAGTGGTCTTCC 57.808 38.462 4.46 0.00 0.00 3.46
1942 2421 8.011290 TCTAAATAATAGGCTAGTGGTCTTCCT 58.989 37.037 4.46 0.00 34.23 3.36
1943 2422 9.310449 CTAAATAATAGGCTAGTGGTCTTCCTA 57.690 37.037 4.46 0.00 34.60 2.94
1944 2423 8.562949 AAATAATAGGCTAGTGGTCTTCCTAA 57.437 34.615 4.46 0.00 34.17 2.69
1945 2424 8.562949 AATAATAGGCTAGTGGTCTTCCTAAA 57.437 34.615 4.46 0.00 34.17 1.85
1946 2425 6.886178 AATAGGCTAGTGGTCTTCCTAAAA 57.114 37.500 0.00 0.00 34.17 1.52
1947 2426 4.554960 AGGCTAGTGGTCTTCCTAAAAC 57.445 45.455 0.00 0.00 34.23 2.43
1948 2427 3.263681 AGGCTAGTGGTCTTCCTAAAACC 59.736 47.826 0.00 0.00 34.23 3.27
1949 2428 3.008704 GGCTAGTGGTCTTCCTAAAACCA 59.991 47.826 0.00 0.00 40.70 3.67
1950 2429 4.506095 GGCTAGTGGTCTTCCTAAAACCAA 60.506 45.833 0.00 0.00 44.30 3.67
1951 2430 5.067954 GCTAGTGGTCTTCCTAAAACCAAA 58.932 41.667 0.00 0.00 44.30 3.28
1952 2431 5.533528 GCTAGTGGTCTTCCTAAAACCAAAA 59.466 40.000 0.00 0.00 44.30 2.44
1953 2432 6.208797 GCTAGTGGTCTTCCTAAAACCAAAAT 59.791 38.462 0.00 0.00 44.30 1.82
1954 2433 7.392393 GCTAGTGGTCTTCCTAAAACCAAAATA 59.608 37.037 0.00 0.00 44.30 1.40
1955 2434 9.292195 CTAGTGGTCTTCCTAAAACCAAAATAA 57.708 33.333 0.00 0.00 44.30 1.40
1956 2435 8.721133 AGTGGTCTTCCTAAAACCAAAATAAT 57.279 30.769 0.00 0.00 44.30 1.28
1957 2436 9.154632 AGTGGTCTTCCTAAAACCAAAATAATT 57.845 29.630 0.00 0.00 44.30 1.40
1958 2437 9.772973 GTGGTCTTCCTAAAACCAAAATAATTT 57.227 29.630 0.00 0.00 44.30 1.82
1959 2438 9.771534 TGGTCTTCCTAAAACCAAAATAATTTG 57.228 29.630 0.00 0.00 40.04 2.32
1978 2457 5.596836 TTTGAGAGGCAAAAATGACAGTT 57.403 34.783 0.00 0.00 43.18 3.16
1979 2458 4.836125 TGAGAGGCAAAAATGACAGTTC 57.164 40.909 0.00 0.00 0.00 3.01
1980 2459 3.250762 TGAGAGGCAAAAATGACAGTTCG 59.749 43.478 0.00 0.00 0.00 3.95
1981 2460 2.030805 AGAGGCAAAAATGACAGTTCGC 60.031 45.455 2.36 2.36 0.00 4.70
1982 2461 1.680735 AGGCAAAAATGACAGTTCGCA 59.319 42.857 10.83 0.00 0.00 5.10
1983 2462 2.053627 GGCAAAAATGACAGTTCGCAG 58.946 47.619 10.83 0.00 0.00 5.18
1984 2463 1.453148 GCAAAAATGACAGTTCGCAGC 59.547 47.619 5.43 0.00 0.00 5.25
1985 2464 2.053627 CAAAAATGACAGTTCGCAGCC 58.946 47.619 0.00 0.00 0.00 4.85
1986 2465 1.609208 AAAATGACAGTTCGCAGCCT 58.391 45.000 0.00 0.00 0.00 4.58
1987 2466 2.472695 AAATGACAGTTCGCAGCCTA 57.527 45.000 0.00 0.00 0.00 3.93
1988 2467 2.472695 AATGACAGTTCGCAGCCTAA 57.527 45.000 0.00 0.00 0.00 2.69
1989 2468 2.472695 ATGACAGTTCGCAGCCTAAA 57.527 45.000 0.00 0.00 0.00 1.85
1990 2469 2.248280 TGACAGTTCGCAGCCTAAAA 57.752 45.000 0.00 0.00 0.00 1.52
1991 2470 2.566913 TGACAGTTCGCAGCCTAAAAA 58.433 42.857 0.00 0.00 0.00 1.94
2011 2490 4.370364 AAAAGTCGCTCAAACATGTTGT 57.630 36.364 12.82 0.00 0.00 3.32
2012 2491 3.338818 AAGTCGCTCAAACATGTTGTG 57.661 42.857 12.82 12.31 0.00 3.33
2013 2492 2.288666 AGTCGCTCAAACATGTTGTGT 58.711 42.857 12.82 0.00 44.84 3.72
2022 2501 2.746279 ACATGTTGTGTTCCCCTTCA 57.254 45.000 0.00 0.00 38.01 3.02
2023 2502 3.243359 ACATGTTGTGTTCCCCTTCAT 57.757 42.857 0.00 0.00 38.01 2.57
2024 2503 3.575805 ACATGTTGTGTTCCCCTTCATT 58.424 40.909 0.00 0.00 38.01 2.57
2025 2504 3.573967 ACATGTTGTGTTCCCCTTCATTC 59.426 43.478 0.00 0.00 38.01 2.67
2026 2505 3.304911 TGTTGTGTTCCCCTTCATTCA 57.695 42.857 0.00 0.00 0.00 2.57
2027 2506 3.221771 TGTTGTGTTCCCCTTCATTCAG 58.778 45.455 0.00 0.00 0.00 3.02
2028 2507 1.909700 TGTGTTCCCCTTCATTCAGC 58.090 50.000 0.00 0.00 0.00 4.26
2029 2508 1.144708 TGTGTTCCCCTTCATTCAGCA 59.855 47.619 0.00 0.00 0.00 4.41
2030 2509 2.238521 GTGTTCCCCTTCATTCAGCAA 58.761 47.619 0.00 0.00 0.00 3.91
2031 2510 2.627699 GTGTTCCCCTTCATTCAGCAAA 59.372 45.455 0.00 0.00 0.00 3.68
2032 2511 3.069443 GTGTTCCCCTTCATTCAGCAAAA 59.931 43.478 0.00 0.00 0.00 2.44
2033 2512 3.708631 TGTTCCCCTTCATTCAGCAAAAA 59.291 39.130 0.00 0.00 0.00 1.94
2056 2535 8.652810 AAAAGGAGATTGATTCACTTTTGTTG 57.347 30.769 9.76 0.00 39.87 3.33
2057 2536 7.587037 AAGGAGATTGATTCACTTTTGTTGA 57.413 32.000 0.00 0.00 0.00 3.18
2058 2537 7.587037 AGGAGATTGATTCACTTTTGTTGAA 57.413 32.000 0.00 0.00 0.00 2.69
2059 2538 7.655490 AGGAGATTGATTCACTTTTGTTGAAG 58.345 34.615 0.00 0.00 0.00 3.02
2060 2539 7.286316 AGGAGATTGATTCACTTTTGTTGAAGT 59.714 33.333 0.00 0.00 40.37 3.01
2061 2540 7.922811 GGAGATTGATTCACTTTTGTTGAAGTT 59.077 33.333 0.00 0.00 37.76 2.66
2062 2541 9.950680 GAGATTGATTCACTTTTGTTGAAGTTA 57.049 29.630 0.00 0.00 37.76 2.24
2063 2542 9.736023 AGATTGATTCACTTTTGTTGAAGTTAC 57.264 29.630 0.00 0.00 37.76 2.50
2064 2543 9.736023 GATTGATTCACTTTTGTTGAAGTTACT 57.264 29.630 0.00 0.00 37.76 2.24
2065 2544 8.909708 TTGATTCACTTTTGTTGAAGTTACTG 57.090 30.769 0.00 0.00 37.76 2.74
2066 2545 7.479980 TGATTCACTTTTGTTGAAGTTACTGG 58.520 34.615 0.00 0.00 37.76 4.00
2067 2546 6.827586 TTCACTTTTGTTGAAGTTACTGGT 57.172 33.333 0.00 0.00 37.76 4.00
2068 2547 6.431198 TCACTTTTGTTGAAGTTACTGGTC 57.569 37.500 0.00 0.00 37.76 4.02
2069 2548 5.941058 TCACTTTTGTTGAAGTTACTGGTCA 59.059 36.000 0.00 0.00 37.76 4.02
2070 2549 6.431543 TCACTTTTGTTGAAGTTACTGGTCAA 59.568 34.615 0.00 0.00 37.76 3.18
2071 2550 7.122055 TCACTTTTGTTGAAGTTACTGGTCAAT 59.878 33.333 3.26 0.00 37.76 2.57
2072 2551 7.432252 CACTTTTGTTGAAGTTACTGGTCAATC 59.568 37.037 3.26 0.00 37.76 2.67
2073 2552 6.385649 TTTGTTGAAGTTACTGGTCAATCC 57.614 37.500 3.26 0.00 34.04 3.01
2074 2553 5.304686 TGTTGAAGTTACTGGTCAATCCT 57.695 39.130 3.26 0.00 34.04 3.24
2075 2554 5.305585 TGTTGAAGTTACTGGTCAATCCTC 58.694 41.667 3.26 0.00 34.04 3.71
2076 2555 5.163248 TGTTGAAGTTACTGGTCAATCCTCA 60.163 40.000 3.26 0.00 34.04 3.86
2077 2556 5.152623 TGAAGTTACTGGTCAATCCTCAG 57.847 43.478 0.00 0.00 37.07 3.35
2078 2557 4.838423 TGAAGTTACTGGTCAATCCTCAGA 59.162 41.667 0.00 0.00 37.07 3.27
2079 2558 5.306937 TGAAGTTACTGGTCAATCCTCAGAA 59.693 40.000 0.00 0.00 37.07 3.02
2080 2559 5.825593 AGTTACTGGTCAATCCTCAGAAA 57.174 39.130 0.00 0.00 37.07 2.52
2081 2560 6.380079 AGTTACTGGTCAATCCTCAGAAAT 57.620 37.500 0.00 0.00 37.07 2.17
2082 2561 6.784031 AGTTACTGGTCAATCCTCAGAAATT 58.216 36.000 0.00 0.00 37.07 1.82
2083 2562 7.918076 AGTTACTGGTCAATCCTCAGAAATTA 58.082 34.615 0.00 0.00 37.07 1.40
2084 2563 8.552296 AGTTACTGGTCAATCCTCAGAAATTAT 58.448 33.333 0.00 0.00 37.07 1.28
2085 2564 9.178758 GTTACTGGTCAATCCTCAGAAATTATT 57.821 33.333 0.00 0.00 37.07 1.40
2086 2565 7.872113 ACTGGTCAATCCTCAGAAATTATTC 57.128 36.000 0.00 0.00 37.07 1.75
2087 2566 7.405292 ACTGGTCAATCCTCAGAAATTATTCA 58.595 34.615 0.00 0.00 36.17 2.57
2088 2567 8.057623 ACTGGTCAATCCTCAGAAATTATTCAT 58.942 33.333 0.00 0.00 36.17 2.57
2089 2568 9.565090 CTGGTCAATCCTCAGAAATTATTCATA 57.435 33.333 0.00 0.00 36.17 2.15
2090 2569 9.565090 TGGTCAATCCTCAGAAATTATTCATAG 57.435 33.333 0.00 0.00 36.17 2.23
2091 2570 8.510505 GGTCAATCCTCAGAAATTATTCATAGC 58.489 37.037 0.00 0.00 38.06 2.97
2092 2571 9.060347 GTCAATCCTCAGAAATTATTCATAGCA 57.940 33.333 0.00 0.00 38.06 3.49
2093 2572 9.281371 TCAATCCTCAGAAATTATTCATAGCAG 57.719 33.333 0.00 0.00 38.06 4.24
2094 2573 9.064706 CAATCCTCAGAAATTATTCATAGCAGT 57.935 33.333 0.00 0.00 38.06 4.40
2096 2575 9.717942 ATCCTCAGAAATTATTCATAGCAGTAC 57.282 33.333 0.00 0.00 38.06 2.73
2097 2576 7.867909 TCCTCAGAAATTATTCATAGCAGTACG 59.132 37.037 0.00 0.00 38.06 3.67
2098 2577 7.653713 CCTCAGAAATTATTCATAGCAGTACGT 59.346 37.037 0.00 0.00 38.06 3.57
2099 2578 8.352752 TCAGAAATTATTCATAGCAGTACGTG 57.647 34.615 0.00 0.00 38.06 4.49
2100 2579 8.194769 TCAGAAATTATTCATAGCAGTACGTGA 58.805 33.333 0.00 0.00 38.06 4.35
2101 2580 8.483218 CAGAAATTATTCATAGCAGTACGTGAG 58.517 37.037 0.00 0.00 38.06 3.51
2102 2581 8.198109 AGAAATTATTCATAGCAGTACGTGAGT 58.802 33.333 0.00 0.00 42.47 3.41
2103 2582 9.459640 GAAATTATTCATAGCAGTACGTGAGTA 57.540 33.333 0.00 0.00 39.43 2.59
2116 2595 4.928661 ACGTGAGTACAGCATCATTTTC 57.071 40.909 0.00 0.00 46.88 2.29
2117 2596 4.314961 ACGTGAGTACAGCATCATTTTCA 58.685 39.130 0.00 0.00 46.88 2.69
2118 2597 4.389992 ACGTGAGTACAGCATCATTTTCAG 59.610 41.667 0.00 0.00 46.88 3.02
2119 2598 4.627035 CGTGAGTACAGCATCATTTTCAGA 59.373 41.667 0.00 0.00 0.00 3.27
2120 2599 5.292834 CGTGAGTACAGCATCATTTTCAGAT 59.707 40.000 0.00 0.00 0.00 2.90
2121 2600 6.183360 CGTGAGTACAGCATCATTTTCAGATT 60.183 38.462 0.00 0.00 0.00 2.40
2122 2601 7.185453 GTGAGTACAGCATCATTTTCAGATTC 58.815 38.462 0.00 0.00 0.00 2.52
2123 2602 6.317140 TGAGTACAGCATCATTTTCAGATTCC 59.683 38.462 0.00 0.00 0.00 3.01
2124 2603 6.421485 AGTACAGCATCATTTTCAGATTCCT 58.579 36.000 0.00 0.00 0.00 3.36
2125 2604 7.568349 AGTACAGCATCATTTTCAGATTCCTA 58.432 34.615 0.00 0.00 0.00 2.94
2126 2605 6.939132 ACAGCATCATTTTCAGATTCCTAG 57.061 37.500 0.00 0.00 0.00 3.02
2127 2606 5.298777 ACAGCATCATTTTCAGATTCCTAGC 59.701 40.000 0.00 0.00 0.00 3.42
2128 2607 5.298527 CAGCATCATTTTCAGATTCCTAGCA 59.701 40.000 0.00 0.00 0.00 3.49
2129 2608 5.889853 AGCATCATTTTCAGATTCCTAGCAA 59.110 36.000 0.00 0.00 0.00 3.91
2130 2609 5.975939 GCATCATTTTCAGATTCCTAGCAAC 59.024 40.000 0.00 0.00 0.00 4.17
2131 2610 6.183360 GCATCATTTTCAGATTCCTAGCAACT 60.183 38.462 0.00 0.00 0.00 3.16
2132 2611 7.012704 GCATCATTTTCAGATTCCTAGCAACTA 59.987 37.037 0.00 0.00 0.00 2.24
2133 2612 8.896744 CATCATTTTCAGATTCCTAGCAACTAA 58.103 33.333 0.00 0.00 0.00 2.24
2134 2613 8.862325 TCATTTTCAGATTCCTAGCAACTAAA 57.138 30.769 0.00 0.00 0.00 1.85
2135 2614 8.950210 TCATTTTCAGATTCCTAGCAACTAAAG 58.050 33.333 0.00 0.00 0.00 1.85
2136 2615 7.687941 TTTTCAGATTCCTAGCAACTAAAGG 57.312 36.000 0.00 0.00 0.00 3.11
2137 2616 5.359194 TCAGATTCCTAGCAACTAAAGGG 57.641 43.478 0.00 0.00 0.00 3.95
2138 2617 4.164221 TCAGATTCCTAGCAACTAAAGGGG 59.836 45.833 0.00 0.00 0.00 4.79
2139 2618 4.164221 CAGATTCCTAGCAACTAAAGGGGA 59.836 45.833 0.00 0.00 0.00 4.81
2140 2619 4.788617 AGATTCCTAGCAACTAAAGGGGAA 59.211 41.667 0.00 0.00 36.11 3.97
2141 2620 5.253096 AGATTCCTAGCAACTAAAGGGGAAA 59.747 40.000 0.00 0.00 35.45 3.13
2142 2621 5.327737 TTCCTAGCAACTAAAGGGGAAAA 57.672 39.130 0.00 0.00 0.00 2.29
2143 2622 5.327737 TCCTAGCAACTAAAGGGGAAAAA 57.672 39.130 0.00 0.00 0.00 1.94
2161 2640 2.174363 AAAGGAAAAATGGCAGCTGC 57.826 45.000 30.88 30.88 41.14 5.25
2162 2641 1.050204 AAGGAAAAATGGCAGCTGCA 58.950 45.000 37.63 24.48 44.36 4.41
2163 2642 1.272807 AGGAAAAATGGCAGCTGCAT 58.727 45.000 37.63 25.51 44.36 3.96
2164 2643 1.206371 AGGAAAAATGGCAGCTGCATC 59.794 47.619 37.63 22.97 44.36 3.91
2165 2644 1.648504 GAAAAATGGCAGCTGCATCC 58.351 50.000 37.63 22.24 44.36 3.51
2238 2717 7.969536 TCACTTCTAATCAAAACCTCTTCAG 57.030 36.000 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
184 185 5.303589 GCCAGTACCCTACAGTTATACATGA 59.696 44.000 0.00 0.00 0.00 3.07
191 192 2.627148 TGGCCAGTACCCTACAGTTA 57.373 50.000 0.00 0.00 0.00 2.24
305 306 2.378445 TGCAGTAGCGCTGTTGAATA 57.622 45.000 22.90 5.66 46.64 1.75
376 377 5.598416 TGCACAGTAATGTACTATCTGCT 57.402 39.130 0.00 0.00 37.23 4.24
387 388 5.705609 AGGTAAAGGTTTGCACAGTAATG 57.294 39.130 0.00 0.00 0.00 1.90
695 771 4.853924 ACAATTGGCAAGAGTAACCAAG 57.146 40.909 10.83 0.00 46.08 3.61
800 878 2.835764 TGAGGGGTGGATAGTACAACAC 59.164 50.000 0.00 0.00 0.00 3.32
807 885 2.293184 ACTGTCATGAGGGGTGGATAGT 60.293 50.000 0.00 0.00 0.00 2.12
858 936 2.290577 GGGAGAGGTGCATCTGTTTCTT 60.291 50.000 2.86 0.00 0.00 2.52
865 943 0.913451 AAGCTGGGAGAGGTGCATCT 60.913 55.000 0.00 0.00 30.84 2.90
1120 1595 2.041701 AGGCATGGCACTTTGAAAACT 58.958 42.857 22.64 0.00 0.00 2.66
1133 1608 2.301296 CCAGTAGGATCTGTAGGCATGG 59.699 54.545 0.00 0.00 36.89 3.66
1154 1629 6.691508 AGGGAACAAACAAGAAAGATAATGC 58.308 36.000 0.00 0.00 0.00 3.56
1188 1663 5.467705 CCTCTTTTCTGCAGATTTTTCCAG 58.532 41.667 19.04 7.30 0.00 3.86
1245 1720 0.179161 CACGAGTCACCCTCACGATC 60.179 60.000 0.00 0.00 40.48 3.69
1402 1877 3.679824 AAAGGCCTAGTGTCACACTAC 57.320 47.619 14.00 5.34 43.46 2.73
1420 1895 3.322191 ACCCAAAACTAGCCCAGAAAA 57.678 42.857 0.00 0.00 0.00 2.29
1425 1900 3.589735 TCAATCTACCCAAAACTAGCCCA 59.410 43.478 0.00 0.00 0.00 5.36
1476 1951 1.331756 GCAAGCCTAATCATCACACCG 59.668 52.381 0.00 0.00 0.00 4.94
1499 1974 2.513204 CACCAGGATGCTCCAGCG 60.513 66.667 0.00 0.00 45.83 5.18
1565 2043 8.031277 GCCCTCATATTCATTATGAAAATGGAC 58.969 37.037 11.88 0.27 44.72 4.02
1619 2098 5.724328 TGACTTAGCCTTGTACTGATCTTG 58.276 41.667 0.00 0.00 0.00 3.02
1622 2101 7.045126 AGTATGACTTAGCCTTGTACTGATC 57.955 40.000 0.00 0.00 0.00 2.92
1624 2103 7.470147 GCATAGTATGACTTAGCCTTGTACTGA 60.470 40.741 14.52 0.00 0.00 3.41
1625 2104 6.642950 GCATAGTATGACTTAGCCTTGTACTG 59.357 42.308 14.52 0.00 0.00 2.74
1626 2105 6.323996 TGCATAGTATGACTTAGCCTTGTACT 59.676 38.462 14.52 0.00 0.00 2.73
1627 2106 6.513180 TGCATAGTATGACTTAGCCTTGTAC 58.487 40.000 14.52 0.00 0.00 2.90
1628 2107 6.724893 TGCATAGTATGACTTAGCCTTGTA 57.275 37.500 14.52 0.00 0.00 2.41
1629 2108 5.614324 TGCATAGTATGACTTAGCCTTGT 57.386 39.130 14.52 0.00 0.00 3.16
1630 2109 6.051717 AGTTGCATAGTATGACTTAGCCTTG 58.948 40.000 14.52 0.00 0.00 3.61
1631 2110 6.240549 AGTTGCATAGTATGACTTAGCCTT 57.759 37.500 14.52 0.00 0.00 4.35
1632 2111 5.878406 AGTTGCATAGTATGACTTAGCCT 57.122 39.130 14.52 0.00 0.00 4.58
1633 2112 7.494625 TGTTAAGTTGCATAGTATGACTTAGCC 59.505 37.037 22.23 16.84 33.68 3.93
1636 2115 9.378551 CCTTGTTAAGTTGCATAGTATGACTTA 57.621 33.333 14.52 15.10 31.98 2.24
1646 2125 6.322712 ACCTGTTTTCCTTGTTAAGTTGCATA 59.677 34.615 0.00 0.00 0.00 3.14
1648 2127 4.464597 ACCTGTTTTCCTTGTTAAGTTGCA 59.535 37.500 0.00 0.00 0.00 4.08
1649 2128 5.006153 ACCTGTTTTCCTTGTTAAGTTGC 57.994 39.130 0.00 0.00 0.00 4.17
1650 2129 7.090953 TGTACCTGTTTTCCTTGTTAAGTTG 57.909 36.000 0.00 0.00 0.00 3.16
1651 2130 7.706100 TTGTACCTGTTTTCCTTGTTAAGTT 57.294 32.000 0.00 0.00 0.00 2.66
1652 2131 7.891498 ATTGTACCTGTTTTCCTTGTTAAGT 57.109 32.000 0.00 0.00 0.00 2.24
1656 2135 8.532819 TGTTTTATTGTACCTGTTTTCCTTGTT 58.467 29.630 0.00 0.00 0.00 2.83
1657 2136 8.068892 TGTTTTATTGTACCTGTTTTCCTTGT 57.931 30.769 0.00 0.00 0.00 3.16
1658 2137 8.813282 GTTGTTTTATTGTACCTGTTTTCCTTG 58.187 33.333 0.00 0.00 0.00 3.61
1659 2138 7.982919 GGTTGTTTTATTGTACCTGTTTTCCTT 59.017 33.333 0.00 0.00 0.00 3.36
1660 2139 7.494211 GGTTGTTTTATTGTACCTGTTTTCCT 58.506 34.615 0.00 0.00 0.00 3.36
1661 2140 6.418523 CGGTTGTTTTATTGTACCTGTTTTCC 59.581 38.462 0.00 0.00 0.00 3.13
1662 2141 6.974048 ACGGTTGTTTTATTGTACCTGTTTTC 59.026 34.615 0.00 0.00 0.00 2.29
1663 2142 6.752815 CACGGTTGTTTTATTGTACCTGTTTT 59.247 34.615 0.00 0.00 0.00 2.43
1664 2143 6.127675 ACACGGTTGTTTTATTGTACCTGTTT 60.128 34.615 0.00 0.00 28.43 2.83
1665 2144 5.357596 ACACGGTTGTTTTATTGTACCTGTT 59.642 36.000 0.00 0.00 28.43 3.16
1666 2145 4.883006 ACACGGTTGTTTTATTGTACCTGT 59.117 37.500 0.00 0.00 28.43 4.00
1667 2146 5.007823 TCACACGGTTGTTTTATTGTACCTG 59.992 40.000 0.00 0.00 31.66 4.00
1668 2147 5.007921 GTCACACGGTTGTTTTATTGTACCT 59.992 40.000 0.00 0.00 31.66 3.08
1669 2148 5.207033 GTCACACGGTTGTTTTATTGTACC 58.793 41.667 0.00 0.00 31.66 3.34
1670 2149 5.808403 TGTCACACGGTTGTTTTATTGTAC 58.192 37.500 0.00 0.00 31.66 2.90
1671 2150 5.504337 GCTGTCACACGGTTGTTTTATTGTA 60.504 40.000 0.00 0.00 31.66 2.41
1672 2151 4.732355 GCTGTCACACGGTTGTTTTATTGT 60.732 41.667 0.00 0.00 31.66 2.71
1673 2152 3.728718 GCTGTCACACGGTTGTTTTATTG 59.271 43.478 0.00 0.00 31.66 1.90
1674 2153 3.243267 GGCTGTCACACGGTTGTTTTATT 60.243 43.478 0.00 0.00 31.66 1.40
1675 2154 2.292292 GGCTGTCACACGGTTGTTTTAT 59.708 45.455 0.00 0.00 31.66 1.40
1676 2155 1.671845 GGCTGTCACACGGTTGTTTTA 59.328 47.619 0.00 0.00 31.66 1.52
1677 2156 0.454196 GGCTGTCACACGGTTGTTTT 59.546 50.000 0.00 0.00 31.66 2.43
1678 2157 0.393808 AGGCTGTCACACGGTTGTTT 60.394 50.000 0.00 0.00 31.66 2.83
1679 2158 0.393808 AAGGCTGTCACACGGTTGTT 60.394 50.000 0.00 0.00 31.66 2.83
1680 2159 0.466543 TAAGGCTGTCACACGGTTGT 59.533 50.000 0.00 0.00 35.84 3.32
1681 2160 0.865769 GTAAGGCTGTCACACGGTTG 59.134 55.000 0.00 0.00 0.00 3.77
1682 2161 0.599204 CGTAAGGCTGTCACACGGTT 60.599 55.000 0.00 0.00 0.00 4.44
1683 2162 1.006571 CGTAAGGCTGTCACACGGT 60.007 57.895 0.00 0.00 0.00 4.83
1684 2163 2.380410 GCGTAAGGCTGTCACACGG 61.380 63.158 7.57 0.00 39.11 4.94
1685 2164 1.014044 ATGCGTAAGGCTGTCACACG 61.014 55.000 0.00 1.91 44.05 4.49
1686 2165 0.721718 GATGCGTAAGGCTGTCACAC 59.278 55.000 0.00 0.00 44.05 3.82
1687 2166 0.320050 TGATGCGTAAGGCTGTCACA 59.680 50.000 0.00 0.00 44.05 3.58
1688 2167 1.002366 CTGATGCGTAAGGCTGTCAC 58.998 55.000 0.00 0.00 44.05 3.67
1689 2168 0.894835 TCTGATGCGTAAGGCTGTCA 59.105 50.000 0.00 0.00 44.05 3.58
1690 2169 1.929836 CTTCTGATGCGTAAGGCTGTC 59.070 52.381 0.00 0.00 44.05 3.51
1691 2170 1.276421 ACTTCTGATGCGTAAGGCTGT 59.724 47.619 0.00 0.00 44.05 4.40
1692 2171 2.015736 ACTTCTGATGCGTAAGGCTG 57.984 50.000 0.00 0.00 44.05 4.85
1693 2172 2.770164 AACTTCTGATGCGTAAGGCT 57.230 45.000 0.00 0.00 44.05 4.58
1694 2173 4.939509 TTAAACTTCTGATGCGTAAGGC 57.060 40.909 0.00 0.00 43.96 4.35
1697 2176 9.781834 CCATTATTTTAAACTTCTGATGCGTAA 57.218 29.630 0.00 0.00 0.00 3.18
1698 2177 8.952278 ACCATTATTTTAAACTTCTGATGCGTA 58.048 29.630 0.00 0.00 0.00 4.42
1699 2178 7.826690 ACCATTATTTTAAACTTCTGATGCGT 58.173 30.769 0.00 0.00 0.00 5.24
1700 2179 8.687824 AACCATTATTTTAAACTTCTGATGCG 57.312 30.769 0.00 0.00 0.00 4.73
1701 2180 9.087424 GGAACCATTATTTTAAACTTCTGATGC 57.913 33.333 0.00 0.00 0.00 3.91
1722 2201 8.840833 ATTTACATGTATTGTTTTTGGGAACC 57.159 30.769 6.36 0.00 44.88 3.62
1732 2211 9.959721 ACCTCAGAGTTATTTACATGTATTGTT 57.040 29.630 6.36 0.00 39.87 2.83
1733 2212 9.959721 AACCTCAGAGTTATTTACATGTATTGT 57.040 29.630 6.36 0.00 42.62 2.71
1738 2217 8.918202 TCAAAACCTCAGAGTTATTTACATGT 57.082 30.769 2.69 2.69 0.00 3.21
1741 2220 8.296713 GCATTCAAAACCTCAGAGTTATTTACA 58.703 33.333 0.00 0.00 0.00 2.41
1742 2221 7.755373 GGCATTCAAAACCTCAGAGTTATTTAC 59.245 37.037 0.00 0.00 0.00 2.01
1743 2222 7.093945 GGGCATTCAAAACCTCAGAGTTATTTA 60.094 37.037 0.00 0.00 0.00 1.40
1744 2223 6.295292 GGGCATTCAAAACCTCAGAGTTATTT 60.295 38.462 0.00 0.00 0.00 1.40
1745 2224 5.185828 GGGCATTCAAAACCTCAGAGTTATT 59.814 40.000 0.00 0.00 0.00 1.40
1746 2225 4.706962 GGGCATTCAAAACCTCAGAGTTAT 59.293 41.667 0.00 0.00 0.00 1.89
1747 2226 4.079253 GGGCATTCAAAACCTCAGAGTTA 58.921 43.478 0.00 0.00 0.00 2.24
1748 2227 2.893489 GGGCATTCAAAACCTCAGAGTT 59.107 45.455 0.00 0.00 0.00 3.01
1749 2228 2.158475 TGGGCATTCAAAACCTCAGAGT 60.158 45.455 0.00 0.00 0.00 3.24
1750 2229 2.517959 TGGGCATTCAAAACCTCAGAG 58.482 47.619 0.00 0.00 0.00 3.35
1751 2230 2.673775 TGGGCATTCAAAACCTCAGA 57.326 45.000 0.00 0.00 0.00 3.27
1752 2231 3.392882 GTTTGGGCATTCAAAACCTCAG 58.607 45.455 1.60 0.00 38.21 3.35
1753 2232 2.103941 GGTTTGGGCATTCAAAACCTCA 59.896 45.455 8.86 0.00 38.12 3.86
1754 2233 2.103941 TGGTTTGGGCATTCAAAACCTC 59.896 45.455 15.38 0.00 42.03 3.85
1755 2234 2.122768 TGGTTTGGGCATTCAAAACCT 58.877 42.857 15.38 0.00 42.03 3.50
1756 2235 2.158827 AGTGGTTTGGGCATTCAAAACC 60.159 45.455 9.13 9.13 42.03 3.27
1757 2236 3.192541 AGTGGTTTGGGCATTCAAAAC 57.807 42.857 7.29 7.29 42.77 2.43
1758 2237 4.219115 TCTAGTGGTTTGGGCATTCAAAA 58.781 39.130 1.60 0.00 38.21 2.44
1759 2238 3.838565 TCTAGTGGTTTGGGCATTCAAA 58.161 40.909 0.00 0.00 34.64 2.69
1760 2239 3.517296 TCTAGTGGTTTGGGCATTCAA 57.483 42.857 0.00 0.00 0.00 2.69
1761 2240 3.245229 ACATCTAGTGGTTTGGGCATTCA 60.245 43.478 0.00 0.00 0.00 2.57
1762 2241 3.356290 ACATCTAGTGGTTTGGGCATTC 58.644 45.455 0.00 0.00 0.00 2.67
1763 2242 3.456380 ACATCTAGTGGTTTGGGCATT 57.544 42.857 0.00 0.00 0.00 3.56
1764 2243 3.456380 AACATCTAGTGGTTTGGGCAT 57.544 42.857 0.00 0.00 0.00 4.40
1765 2244 2.969821 AACATCTAGTGGTTTGGGCA 57.030 45.000 0.00 0.00 0.00 5.36
1766 2245 4.038642 TGAAAAACATCTAGTGGTTTGGGC 59.961 41.667 12.84 7.91 46.79 5.36
1767 2246 5.782893 TGAAAAACATCTAGTGGTTTGGG 57.217 39.130 12.84 0.00 46.79 4.12
1768 2247 5.634859 GCATGAAAAACATCTAGTGGTTTGG 59.365 40.000 12.84 4.93 46.79 3.28
1769 2248 6.215121 TGCATGAAAAACATCTAGTGGTTTG 58.785 36.000 12.84 5.09 46.79 2.93
1771 2250 6.594788 ATGCATGAAAAACATCTAGTGGTT 57.405 33.333 0.00 0.00 40.18 3.67
1772 2251 6.183360 GCTATGCATGAAAAACATCTAGTGGT 60.183 38.462 10.16 0.00 37.07 4.16
1773 2252 6.204359 GCTATGCATGAAAAACATCTAGTGG 58.796 40.000 10.16 0.00 37.07 4.00
1774 2253 5.905733 CGCTATGCATGAAAAACATCTAGTG 59.094 40.000 10.16 0.00 37.07 2.74
1775 2254 5.008019 CCGCTATGCATGAAAAACATCTAGT 59.992 40.000 10.16 0.00 37.07 2.57
1776 2255 5.446709 CCGCTATGCATGAAAAACATCTAG 58.553 41.667 10.16 0.00 37.07 2.43
1777 2256 4.261155 GCCGCTATGCATGAAAAACATCTA 60.261 41.667 10.16 0.00 37.07 1.98
1778 2257 3.489738 GCCGCTATGCATGAAAAACATCT 60.490 43.478 10.16 0.00 37.07 2.90
1779 2258 2.791004 GCCGCTATGCATGAAAAACATC 59.209 45.455 10.16 0.00 37.07 3.06
1780 2259 2.428171 AGCCGCTATGCATGAAAAACAT 59.572 40.909 10.16 0.00 40.17 2.71
1781 2260 1.818060 AGCCGCTATGCATGAAAAACA 59.182 42.857 10.16 0.00 0.00 2.83
1782 2261 2.566952 AGCCGCTATGCATGAAAAAC 57.433 45.000 10.16 0.00 0.00 2.43
1783 2262 2.159254 GGAAGCCGCTATGCATGAAAAA 60.159 45.455 10.16 0.00 0.00 1.94
1784 2263 1.405105 GGAAGCCGCTATGCATGAAAA 59.595 47.619 10.16 0.00 0.00 2.29
1785 2264 1.024271 GGAAGCCGCTATGCATGAAA 58.976 50.000 10.16 0.00 0.00 2.69
1786 2265 0.107263 TGGAAGCCGCTATGCATGAA 60.107 50.000 10.16 0.00 0.00 2.57
1787 2266 0.533531 CTGGAAGCCGCTATGCATGA 60.534 55.000 10.16 0.00 0.00 3.07
1788 2267 1.947013 CTGGAAGCCGCTATGCATG 59.053 57.895 10.16 0.26 0.00 4.06
1789 2268 4.469883 CTGGAAGCCGCTATGCAT 57.530 55.556 3.79 3.79 0.00 3.96
1800 2279 0.605319 TTGCCGTTGGTAGCTGGAAG 60.605 55.000 0.00 0.00 0.00 3.46
1801 2280 0.037590 ATTGCCGTTGGTAGCTGGAA 59.962 50.000 0.00 0.00 0.00 3.53
1802 2281 0.037590 AATTGCCGTTGGTAGCTGGA 59.962 50.000 0.00 0.00 0.00 3.86
1803 2282 0.451783 GAATTGCCGTTGGTAGCTGG 59.548 55.000 0.00 0.00 0.00 4.85
1804 2283 1.131126 CAGAATTGCCGTTGGTAGCTG 59.869 52.381 0.00 0.00 0.00 4.24
1805 2284 1.271379 ACAGAATTGCCGTTGGTAGCT 60.271 47.619 0.00 0.00 0.00 3.32
1806 2285 1.165270 ACAGAATTGCCGTTGGTAGC 58.835 50.000 0.00 0.00 0.00 3.58
1807 2286 3.004315 ACAAACAGAATTGCCGTTGGTAG 59.996 43.478 0.00 0.00 33.52 3.18
1808 2287 2.952978 ACAAACAGAATTGCCGTTGGTA 59.047 40.909 0.00 0.00 33.52 3.25
1809 2288 1.754226 ACAAACAGAATTGCCGTTGGT 59.246 42.857 0.00 0.00 33.52 3.67
1810 2289 2.507339 ACAAACAGAATTGCCGTTGG 57.493 45.000 0.00 0.00 33.52 3.77
1811 2290 4.260172 GGAAAACAAACAGAATTGCCGTTG 60.260 41.667 0.00 0.00 33.52 4.10
1812 2291 3.868661 GGAAAACAAACAGAATTGCCGTT 59.131 39.130 0.00 0.00 33.52 4.44
1813 2292 3.132111 AGGAAAACAAACAGAATTGCCGT 59.868 39.130 0.00 0.00 33.52 5.68
1814 2293 3.716601 AGGAAAACAAACAGAATTGCCG 58.283 40.909 0.00 0.00 33.52 5.69
1815 2294 6.928492 TGATAAGGAAAACAAACAGAATTGCC 59.072 34.615 0.00 0.00 33.52 4.52
1816 2295 7.945033 TGATAAGGAAAACAAACAGAATTGC 57.055 32.000 0.00 0.00 33.52 3.56
1820 2299 9.528018 GTTGAATGATAAGGAAAACAAACAGAA 57.472 29.630 0.00 0.00 0.00 3.02
1821 2300 8.141268 GGTTGAATGATAAGGAAAACAAACAGA 58.859 33.333 0.00 0.00 0.00 3.41
1822 2301 8.143835 AGGTTGAATGATAAGGAAAACAAACAG 58.856 33.333 0.00 0.00 0.00 3.16
1823 2302 7.925483 CAGGTTGAATGATAAGGAAAACAAACA 59.075 33.333 0.00 0.00 0.00 2.83
1824 2303 7.095649 GCAGGTTGAATGATAAGGAAAACAAAC 60.096 37.037 0.00 0.00 0.00 2.93
1825 2304 6.928492 GCAGGTTGAATGATAAGGAAAACAAA 59.072 34.615 0.00 0.00 0.00 2.83
1826 2305 6.454795 GCAGGTTGAATGATAAGGAAAACAA 58.545 36.000 0.00 0.00 0.00 2.83
1827 2306 5.047377 GGCAGGTTGAATGATAAGGAAAACA 60.047 40.000 0.00 0.00 0.00 2.83
1828 2307 5.410924 GGCAGGTTGAATGATAAGGAAAAC 58.589 41.667 0.00 0.00 0.00 2.43
1829 2308 4.466015 GGGCAGGTTGAATGATAAGGAAAA 59.534 41.667 0.00 0.00 0.00 2.29
1830 2309 4.023291 GGGCAGGTTGAATGATAAGGAAA 58.977 43.478 0.00 0.00 0.00 3.13
1831 2310 3.627237 GGGGCAGGTTGAATGATAAGGAA 60.627 47.826 0.00 0.00 0.00 3.36
1832 2311 2.091885 GGGGCAGGTTGAATGATAAGGA 60.092 50.000 0.00 0.00 0.00 3.36
1833 2312 2.310538 GGGGCAGGTTGAATGATAAGG 58.689 52.381 0.00 0.00 0.00 2.69
1834 2313 2.310538 GGGGGCAGGTTGAATGATAAG 58.689 52.381 0.00 0.00 0.00 1.73
1835 2314 1.643286 TGGGGGCAGGTTGAATGATAA 59.357 47.619 0.00 0.00 0.00 1.75
1836 2315 1.303898 TGGGGGCAGGTTGAATGATA 58.696 50.000 0.00 0.00 0.00 2.15
1837 2316 0.413037 TTGGGGGCAGGTTGAATGAT 59.587 50.000 0.00 0.00 0.00 2.45
1838 2317 0.541764 GTTGGGGGCAGGTTGAATGA 60.542 55.000 0.00 0.00 0.00 2.57
1839 2318 0.831288 TGTTGGGGGCAGGTTGAATG 60.831 55.000 0.00 0.00 0.00 2.67
1840 2319 0.831711 GTGTTGGGGGCAGGTTGAAT 60.832 55.000 0.00 0.00 0.00 2.57
1841 2320 1.456705 GTGTTGGGGGCAGGTTGAA 60.457 57.895 0.00 0.00 0.00 2.69
1842 2321 2.197324 GTGTTGGGGGCAGGTTGA 59.803 61.111 0.00 0.00 0.00 3.18
1843 2322 2.917227 GGTGTTGGGGGCAGGTTG 60.917 66.667 0.00 0.00 0.00 3.77
1844 2323 4.233558 GGGTGTTGGGGGCAGGTT 62.234 66.667 0.00 0.00 0.00 3.50
1851 2330 1.218439 TTATCCTGGGGGTGTTGGGG 61.218 60.000 0.00 0.00 0.00 4.96
1852 2331 0.258774 CTTATCCTGGGGGTGTTGGG 59.741 60.000 0.00 0.00 0.00 4.12
1853 2332 1.295020 TCTTATCCTGGGGGTGTTGG 58.705 55.000 0.00 0.00 0.00 3.77
1854 2333 2.308866 AGTTCTTATCCTGGGGGTGTTG 59.691 50.000 0.00 0.00 0.00 3.33
1855 2334 2.644151 AGTTCTTATCCTGGGGGTGTT 58.356 47.619 0.00 0.00 0.00 3.32
1856 2335 2.361085 AGTTCTTATCCTGGGGGTGT 57.639 50.000 0.00 0.00 0.00 4.16
1857 2336 4.037927 TCTTAGTTCTTATCCTGGGGGTG 58.962 47.826 0.00 0.00 0.00 4.61
1858 2337 4.363546 TCTTAGTTCTTATCCTGGGGGT 57.636 45.455 0.00 0.00 0.00 4.95
1859 2338 5.437946 GTTTCTTAGTTCTTATCCTGGGGG 58.562 45.833 0.00 0.00 0.00 5.40
1860 2339 5.045140 TGGTTTCTTAGTTCTTATCCTGGGG 60.045 44.000 0.00 0.00 0.00 4.96
1861 2340 5.880887 GTGGTTTCTTAGTTCTTATCCTGGG 59.119 44.000 0.00 0.00 0.00 4.45
1862 2341 6.712276 AGTGGTTTCTTAGTTCTTATCCTGG 58.288 40.000 0.00 0.00 0.00 4.45
1863 2342 8.622948 AAAGTGGTTTCTTAGTTCTTATCCTG 57.377 34.615 0.00 0.00 0.00 3.86
1868 2347 9.112725 GGTGTAAAAGTGGTTTCTTAGTTCTTA 57.887 33.333 0.00 0.00 0.00 2.10
1869 2348 7.832685 AGGTGTAAAAGTGGTTTCTTAGTTCTT 59.167 33.333 0.00 0.00 0.00 2.52
1870 2349 7.344134 AGGTGTAAAAGTGGTTTCTTAGTTCT 58.656 34.615 0.00 0.00 0.00 3.01
1871 2350 7.563888 AGGTGTAAAAGTGGTTTCTTAGTTC 57.436 36.000 0.00 0.00 0.00 3.01
1872 2351 7.228108 GCTAGGTGTAAAAGTGGTTTCTTAGTT 59.772 37.037 0.00 0.00 0.00 2.24
1873 2352 6.709397 GCTAGGTGTAAAAGTGGTTTCTTAGT 59.291 38.462 0.00 0.00 0.00 2.24
1874 2353 6.935208 AGCTAGGTGTAAAAGTGGTTTCTTAG 59.065 38.462 0.00 0.00 0.00 2.18
1875 2354 6.834107 AGCTAGGTGTAAAAGTGGTTTCTTA 58.166 36.000 0.00 0.00 0.00 2.10
1876 2355 5.691896 AGCTAGGTGTAAAAGTGGTTTCTT 58.308 37.500 0.00 0.00 0.00 2.52
1877 2356 5.306114 AGCTAGGTGTAAAAGTGGTTTCT 57.694 39.130 0.00 0.00 0.00 2.52
1878 2357 7.683437 ATTAGCTAGGTGTAAAAGTGGTTTC 57.317 36.000 4.27 0.00 0.00 2.78
1879 2358 8.473358 AAATTAGCTAGGTGTAAAAGTGGTTT 57.527 30.769 4.27 0.00 0.00 3.27
1880 2359 7.942894 AGAAATTAGCTAGGTGTAAAAGTGGTT 59.057 33.333 4.27 0.00 0.00 3.67
1881 2360 7.459234 AGAAATTAGCTAGGTGTAAAAGTGGT 58.541 34.615 4.27 0.00 0.00 4.16
1882 2361 7.923414 AGAAATTAGCTAGGTGTAAAAGTGG 57.077 36.000 4.27 0.00 0.00 4.00
1886 2365 9.974980 CCAAAAAGAAATTAGCTAGGTGTAAAA 57.025 29.630 4.27 0.00 0.00 1.52
1887 2366 8.085909 GCCAAAAAGAAATTAGCTAGGTGTAAA 58.914 33.333 4.27 0.00 0.00 2.01
1888 2367 7.450323 AGCCAAAAAGAAATTAGCTAGGTGTAA 59.550 33.333 4.27 0.00 0.00 2.41
1889 2368 6.946009 AGCCAAAAAGAAATTAGCTAGGTGTA 59.054 34.615 4.27 0.00 0.00 2.90
1890 2369 5.775195 AGCCAAAAAGAAATTAGCTAGGTGT 59.225 36.000 4.27 0.00 0.00 4.16
1891 2370 6.272822 AGCCAAAAAGAAATTAGCTAGGTG 57.727 37.500 4.27 0.00 0.00 4.00
1892 2371 6.918067 AAGCCAAAAAGAAATTAGCTAGGT 57.082 33.333 0.00 0.00 0.00 3.08
1893 2372 7.606349 AGAAAGCCAAAAAGAAATTAGCTAGG 58.394 34.615 0.00 0.00 0.00 3.02
1903 2382 9.869757 GCCTATTATTTAGAAAGCCAAAAAGAA 57.130 29.630 0.00 0.00 0.00 2.52
1904 2383 9.255029 AGCCTATTATTTAGAAAGCCAAAAAGA 57.745 29.630 0.00 0.00 0.00 2.52
1907 2386 9.695155 ACTAGCCTATTATTTAGAAAGCCAAAA 57.305 29.630 0.00 0.00 0.00 2.44
1908 2387 9.120538 CACTAGCCTATTATTTAGAAAGCCAAA 57.879 33.333 0.00 0.00 0.00 3.28
1909 2388 7.719633 CCACTAGCCTATTATTTAGAAAGCCAA 59.280 37.037 0.00 0.00 0.00 4.52
1910 2389 7.147373 ACCACTAGCCTATTATTTAGAAAGCCA 60.147 37.037 0.00 0.00 0.00 4.75
1911 2390 7.225011 ACCACTAGCCTATTATTTAGAAAGCC 58.775 38.462 0.00 0.00 0.00 4.35
1912 2391 8.151596 AGACCACTAGCCTATTATTTAGAAAGC 58.848 37.037 0.00 0.00 0.00 3.51
1915 2394 8.648693 GGAAGACCACTAGCCTATTATTTAGAA 58.351 37.037 0.00 0.00 35.97 2.10
1916 2395 8.011290 AGGAAGACCACTAGCCTATTATTTAGA 58.989 37.037 0.00 0.00 38.94 2.10
1917 2396 8.196378 AGGAAGACCACTAGCCTATTATTTAG 57.804 38.462 0.00 0.00 38.94 1.85
1918 2397 9.664777 TTAGGAAGACCACTAGCCTATTATTTA 57.335 33.333 0.00 0.00 38.94 1.40
1919 2398 8.562949 TTAGGAAGACCACTAGCCTATTATTT 57.437 34.615 0.00 0.00 38.94 1.40
1920 2399 8.562949 TTTAGGAAGACCACTAGCCTATTATT 57.437 34.615 0.00 0.00 38.94 1.40
1921 2400 8.430431 GTTTTAGGAAGACCACTAGCCTATTAT 58.570 37.037 0.00 0.00 38.94 1.28
1922 2401 7.147602 GGTTTTAGGAAGACCACTAGCCTATTA 60.148 40.741 0.00 0.00 38.94 0.98
1923 2402 6.352823 GGTTTTAGGAAGACCACTAGCCTATT 60.353 42.308 0.00 0.00 38.94 1.73
1924 2403 5.130643 GGTTTTAGGAAGACCACTAGCCTAT 59.869 44.000 0.00 0.00 38.94 2.57
1925 2404 4.468868 GGTTTTAGGAAGACCACTAGCCTA 59.531 45.833 0.00 0.00 38.94 3.93
1926 2405 3.263681 GGTTTTAGGAAGACCACTAGCCT 59.736 47.826 0.00 0.00 38.94 4.58
1927 2406 3.008704 TGGTTTTAGGAAGACCACTAGCC 59.991 47.826 0.00 0.00 38.47 3.93
1928 2407 4.281898 TGGTTTTAGGAAGACCACTAGC 57.718 45.455 0.00 0.00 38.47 3.42
1929 2408 7.761038 ATTTTGGTTTTAGGAAGACCACTAG 57.239 36.000 1.32 0.00 42.77 2.57
1930 2409 9.816787 ATTATTTTGGTTTTAGGAAGACCACTA 57.183 29.630 1.32 0.00 42.77 2.74
1931 2410 8.721133 ATTATTTTGGTTTTAGGAAGACCACT 57.279 30.769 1.32 0.00 42.77 4.00
1932 2411 9.772973 AAATTATTTTGGTTTTAGGAAGACCAC 57.227 29.630 1.32 0.00 42.77 4.16
1933 2412 9.771534 CAAATTATTTTGGTTTTAGGAAGACCA 57.228 29.630 0.00 0.00 41.46 4.02
1934 2413 9.990360 TCAAATTATTTTGGTTTTAGGAAGACC 57.010 29.630 9.56 0.00 42.10 3.85
1939 2418 8.311109 GCCTCTCAAATTATTTTGGTTTTAGGA 58.689 33.333 9.56 0.00 42.10 2.94
1940 2419 8.093927 TGCCTCTCAAATTATTTTGGTTTTAGG 58.906 33.333 9.56 9.76 42.10 2.69
1941 2420 9.487790 TTGCCTCTCAAATTATTTTGGTTTTAG 57.512 29.630 9.56 1.37 42.10 1.85
1942 2421 9.838339 TTTGCCTCTCAAATTATTTTGGTTTTA 57.162 25.926 9.56 0.00 42.10 1.52
1943 2422 8.744568 TTTGCCTCTCAAATTATTTTGGTTTT 57.255 26.923 9.56 0.00 42.10 2.43
1944 2423 8.744568 TTTTGCCTCTCAAATTATTTTGGTTT 57.255 26.923 9.56 0.00 43.53 3.27
1945 2424 8.744568 TTTTTGCCTCTCAAATTATTTTGGTT 57.255 26.923 9.56 0.00 43.53 3.67
1946 2425 8.785946 CATTTTTGCCTCTCAAATTATTTTGGT 58.214 29.630 9.56 0.00 43.53 3.67
1947 2426 9.001542 TCATTTTTGCCTCTCAAATTATTTTGG 57.998 29.630 9.56 2.56 43.53 3.28
1948 2427 9.815936 GTCATTTTTGCCTCTCAAATTATTTTG 57.184 29.630 4.10 4.10 43.53 2.44
1949 2428 9.558396 TGTCATTTTTGCCTCTCAAATTATTTT 57.442 25.926 0.00 0.00 43.53 1.82
1950 2429 9.211485 CTGTCATTTTTGCCTCTCAAATTATTT 57.789 29.630 0.00 0.00 43.53 1.40
1951 2430 8.370182 ACTGTCATTTTTGCCTCTCAAATTATT 58.630 29.630 0.00 0.00 43.53 1.40
1952 2431 7.899973 ACTGTCATTTTTGCCTCTCAAATTAT 58.100 30.769 0.00 0.00 43.53 1.28
1953 2432 7.288810 ACTGTCATTTTTGCCTCTCAAATTA 57.711 32.000 0.00 0.00 43.53 1.40
1954 2433 6.165700 ACTGTCATTTTTGCCTCTCAAATT 57.834 33.333 0.00 0.00 43.53 1.82
1955 2434 5.796424 ACTGTCATTTTTGCCTCTCAAAT 57.204 34.783 0.00 0.00 43.53 2.32
1956 2435 5.591099 GAACTGTCATTTTTGCCTCTCAAA 58.409 37.500 0.00 0.00 42.50 2.69
1957 2436 4.261155 CGAACTGTCATTTTTGCCTCTCAA 60.261 41.667 0.00 0.00 0.00 3.02
1958 2437 3.250762 CGAACTGTCATTTTTGCCTCTCA 59.749 43.478 0.00 0.00 0.00 3.27
1959 2438 3.814945 CGAACTGTCATTTTTGCCTCTC 58.185 45.455 0.00 0.00 0.00 3.20
1960 2439 2.030805 GCGAACTGTCATTTTTGCCTCT 60.031 45.455 0.00 0.00 0.00 3.69
1961 2440 2.287547 TGCGAACTGTCATTTTTGCCTC 60.288 45.455 0.00 0.00 31.93 4.70
1962 2441 1.680735 TGCGAACTGTCATTTTTGCCT 59.319 42.857 0.00 0.00 31.93 4.75
1963 2442 2.053627 CTGCGAACTGTCATTTTTGCC 58.946 47.619 0.00 0.00 31.93 4.52
1964 2443 1.453148 GCTGCGAACTGTCATTTTTGC 59.547 47.619 0.00 1.18 33.35 3.68
1965 2444 2.053627 GGCTGCGAACTGTCATTTTTG 58.946 47.619 0.00 0.00 0.00 2.44
1966 2445 1.956477 AGGCTGCGAACTGTCATTTTT 59.044 42.857 0.00 0.00 0.00 1.94
1967 2446 1.609208 AGGCTGCGAACTGTCATTTT 58.391 45.000 0.00 0.00 0.00 1.82
1968 2447 2.472695 TAGGCTGCGAACTGTCATTT 57.527 45.000 0.00 0.00 0.00 2.32
1969 2448 2.472695 TTAGGCTGCGAACTGTCATT 57.527 45.000 0.00 0.00 0.00 2.57
1970 2449 2.472695 TTTAGGCTGCGAACTGTCAT 57.527 45.000 0.00 0.00 0.00 3.06
1971 2450 2.248280 TTTTAGGCTGCGAACTGTCA 57.752 45.000 0.00 0.00 0.00 3.58
1989 2468 4.562394 CACAACATGTTTGAGCGACTTTTT 59.438 37.500 8.77 0.00 0.00 1.94
1990 2469 4.104776 CACAACATGTTTGAGCGACTTTT 58.895 39.130 8.77 0.00 0.00 2.27
1991 2470 3.128589 ACACAACATGTTTGAGCGACTTT 59.871 39.130 20.41 1.39 38.98 2.66
1992 2471 2.682856 ACACAACATGTTTGAGCGACTT 59.317 40.909 20.41 1.92 38.98 3.01
1993 2472 2.288666 ACACAACATGTTTGAGCGACT 58.711 42.857 20.41 2.44 38.98 4.18
1994 2473 2.755836 ACACAACATGTTTGAGCGAC 57.244 45.000 20.41 0.00 38.98 5.19
2003 2482 2.746279 TGAAGGGGAACACAACATGT 57.254 45.000 0.00 0.00 46.42 3.21
2004 2483 3.573538 TGAATGAAGGGGAACACAACATG 59.426 43.478 0.00 0.00 0.00 3.21
2005 2484 3.828451 CTGAATGAAGGGGAACACAACAT 59.172 43.478 0.00 0.00 0.00 2.71
2006 2485 3.221771 CTGAATGAAGGGGAACACAACA 58.778 45.455 0.00 0.00 0.00 3.33
2007 2486 2.029918 GCTGAATGAAGGGGAACACAAC 60.030 50.000 0.00 0.00 0.00 3.32
2008 2487 2.238521 GCTGAATGAAGGGGAACACAA 58.761 47.619 0.00 0.00 0.00 3.33
2009 2488 1.144708 TGCTGAATGAAGGGGAACACA 59.855 47.619 0.00 0.00 0.00 3.72
2010 2489 1.909700 TGCTGAATGAAGGGGAACAC 58.090 50.000 0.00 0.00 0.00 3.32
2011 2490 2.673775 TTGCTGAATGAAGGGGAACA 57.326 45.000 0.00 0.00 0.00 3.18
2012 2491 4.335400 TTTTTGCTGAATGAAGGGGAAC 57.665 40.909 0.00 0.00 0.00 3.62
2030 2509 9.101655 CAACAAAAGTGAATCAATCTCCTTTTT 57.898 29.630 5.99 0.00 37.59 1.94
2031 2510 8.477256 TCAACAAAAGTGAATCAATCTCCTTTT 58.523 29.630 3.61 3.61 38.90 2.27
2032 2511 8.010733 TCAACAAAAGTGAATCAATCTCCTTT 57.989 30.769 0.00 0.00 33.91 3.11
2033 2512 7.587037 TCAACAAAAGTGAATCAATCTCCTT 57.413 32.000 0.00 0.00 0.00 3.36
2034 2513 7.286316 ACTTCAACAAAAGTGAATCAATCTCCT 59.714 33.333 0.00 0.00 38.06 3.69
2035 2514 7.428826 ACTTCAACAAAAGTGAATCAATCTCC 58.571 34.615 0.00 0.00 38.06 3.71
2036 2515 8.862550 AACTTCAACAAAAGTGAATCAATCTC 57.137 30.769 0.00 0.00 39.40 2.75
2037 2516 9.736023 GTAACTTCAACAAAAGTGAATCAATCT 57.264 29.630 0.00 0.00 39.40 2.40
2038 2517 9.736023 AGTAACTTCAACAAAAGTGAATCAATC 57.264 29.630 0.00 0.00 39.40 2.67
2039 2518 9.520204 CAGTAACTTCAACAAAAGTGAATCAAT 57.480 29.630 0.00 0.00 39.40 2.57
2040 2519 7.973388 CCAGTAACTTCAACAAAAGTGAATCAA 59.027 33.333 0.00 0.00 39.40 2.57
2041 2520 7.122055 ACCAGTAACTTCAACAAAAGTGAATCA 59.878 33.333 0.00 0.00 39.40 2.57
2042 2521 7.480810 ACCAGTAACTTCAACAAAAGTGAATC 58.519 34.615 0.00 0.00 39.40 2.52
2043 2522 7.122055 TGACCAGTAACTTCAACAAAAGTGAAT 59.878 33.333 0.00 0.00 39.40 2.57
2044 2523 6.431543 TGACCAGTAACTTCAACAAAAGTGAA 59.568 34.615 0.00 0.00 39.40 3.18
2045 2524 5.941058 TGACCAGTAACTTCAACAAAAGTGA 59.059 36.000 0.00 0.00 39.40 3.41
2046 2525 6.189677 TGACCAGTAACTTCAACAAAAGTG 57.810 37.500 0.00 0.00 39.40 3.16
2047 2526 6.827586 TTGACCAGTAACTTCAACAAAAGT 57.172 33.333 0.00 0.00 41.20 2.66
2048 2527 6.918022 GGATTGACCAGTAACTTCAACAAAAG 59.082 38.462 0.00 0.00 38.79 2.27
2049 2528 6.605594 AGGATTGACCAGTAACTTCAACAAAA 59.394 34.615 0.00 0.00 42.04 2.44
2050 2529 6.126409 AGGATTGACCAGTAACTTCAACAAA 58.874 36.000 0.00 0.00 42.04 2.83
2051 2530 5.690865 AGGATTGACCAGTAACTTCAACAA 58.309 37.500 0.00 0.00 42.04 2.83
2052 2531 5.163248 TGAGGATTGACCAGTAACTTCAACA 60.163 40.000 0.00 0.00 42.04 3.33
2053 2532 5.305585 TGAGGATTGACCAGTAACTTCAAC 58.694 41.667 0.00 0.00 42.04 3.18
2054 2533 5.306937 TCTGAGGATTGACCAGTAACTTCAA 59.693 40.000 0.00 0.00 42.04 2.69
2055 2534 4.838423 TCTGAGGATTGACCAGTAACTTCA 59.162 41.667 0.00 0.00 42.04 3.02
2056 2535 5.407407 TCTGAGGATTGACCAGTAACTTC 57.593 43.478 0.00 0.00 42.04 3.01
2057 2536 5.825593 TTCTGAGGATTGACCAGTAACTT 57.174 39.130 0.00 0.00 42.04 2.66
2058 2537 5.825593 TTTCTGAGGATTGACCAGTAACT 57.174 39.130 0.00 0.00 42.04 2.24
2059 2538 8.738645 ATAATTTCTGAGGATTGACCAGTAAC 57.261 34.615 0.00 0.00 42.04 2.50
2060 2539 9.396022 GAATAATTTCTGAGGATTGACCAGTAA 57.604 33.333 0.00 0.00 42.04 2.24
2061 2540 8.548025 TGAATAATTTCTGAGGATTGACCAGTA 58.452 33.333 0.00 0.00 35.48 2.74
2062 2541 7.405292 TGAATAATTTCTGAGGATTGACCAGT 58.595 34.615 0.00 0.00 35.48 4.00
2063 2542 7.870509 TGAATAATTTCTGAGGATTGACCAG 57.129 36.000 0.00 0.00 35.48 4.00
2064 2543 9.565090 CTATGAATAATTTCTGAGGATTGACCA 57.435 33.333 0.00 0.00 35.48 4.02
2065 2544 8.510505 GCTATGAATAATTTCTGAGGATTGACC 58.489 37.037 0.00 0.00 34.24 4.02
2066 2545 9.060347 TGCTATGAATAATTTCTGAGGATTGAC 57.940 33.333 0.00 0.00 32.78 3.18
2067 2546 9.281371 CTGCTATGAATAATTTCTGAGGATTGA 57.719 33.333 0.00 0.00 32.78 2.57
2068 2547 9.064706 ACTGCTATGAATAATTTCTGAGGATTG 57.935 33.333 0.00 0.00 32.78 2.67
2070 2549 9.717942 GTACTGCTATGAATAATTTCTGAGGAT 57.282 33.333 0.00 0.00 32.78 3.24
2071 2550 7.867909 CGTACTGCTATGAATAATTTCTGAGGA 59.132 37.037 0.00 0.00 32.78 3.71
2072 2551 7.653713 ACGTACTGCTATGAATAATTTCTGAGG 59.346 37.037 0.00 0.00 32.78 3.86
2073 2552 8.483218 CACGTACTGCTATGAATAATTTCTGAG 58.517 37.037 0.00 0.00 32.78 3.35
2074 2553 8.194769 TCACGTACTGCTATGAATAATTTCTGA 58.805 33.333 0.00 0.00 32.78 3.27
2075 2554 8.352752 TCACGTACTGCTATGAATAATTTCTG 57.647 34.615 0.00 0.00 32.78 3.02
2076 2555 8.198109 ACTCACGTACTGCTATGAATAATTTCT 58.802 33.333 0.00 0.00 32.78 2.52
2077 2556 8.354011 ACTCACGTACTGCTATGAATAATTTC 57.646 34.615 0.00 0.00 0.00 2.17
2078 2557 9.245962 GTACTCACGTACTGCTATGAATAATTT 57.754 33.333 0.00 0.00 42.16 1.82
2079 2558 8.410912 TGTACTCACGTACTGCTATGAATAATT 58.589 33.333 0.00 0.00 44.97 1.40
2080 2559 7.937649 TGTACTCACGTACTGCTATGAATAAT 58.062 34.615 0.00 0.00 44.97 1.28
2081 2560 7.324354 TGTACTCACGTACTGCTATGAATAA 57.676 36.000 0.00 0.00 44.97 1.40
2082 2561 6.930667 TGTACTCACGTACTGCTATGAATA 57.069 37.500 0.00 0.00 44.97 1.75
2083 2562 5.822278 CTGTACTCACGTACTGCTATGAAT 58.178 41.667 0.00 0.00 44.97 2.57
2084 2563 5.231265 CTGTACTCACGTACTGCTATGAA 57.769 43.478 0.00 0.00 44.97 2.57
2085 2564 4.877323 CTGTACTCACGTACTGCTATGA 57.123 45.455 0.00 0.00 44.97 2.15
2091 2570 3.487563 TGATGCTGTACTCACGTACTG 57.512 47.619 0.00 5.03 44.97 2.74
2092 2571 4.720649 AATGATGCTGTACTCACGTACT 57.279 40.909 0.00 0.00 44.97 2.73
2093 2572 5.347635 TGAAAATGATGCTGTACTCACGTAC 59.652 40.000 0.00 0.00 44.95 3.67
2094 2573 5.474825 TGAAAATGATGCTGTACTCACGTA 58.525 37.500 0.00 0.00 0.00 3.57
2095 2574 4.314961 TGAAAATGATGCTGTACTCACGT 58.685 39.130 0.00 0.00 0.00 4.49
2096 2575 4.627035 TCTGAAAATGATGCTGTACTCACG 59.373 41.667 0.00 0.00 0.00 4.35
2097 2576 6.674694 ATCTGAAAATGATGCTGTACTCAC 57.325 37.500 0.00 0.00 0.00 3.51
2098 2577 6.317140 GGAATCTGAAAATGATGCTGTACTCA 59.683 38.462 0.00 0.00 0.00 3.41
2099 2578 6.541641 AGGAATCTGAAAATGATGCTGTACTC 59.458 38.462 0.00 0.00 0.00 2.59
2100 2579 6.421485 AGGAATCTGAAAATGATGCTGTACT 58.579 36.000 0.00 0.00 0.00 2.73
2101 2580 6.690194 AGGAATCTGAAAATGATGCTGTAC 57.310 37.500 0.00 0.00 0.00 2.90
2102 2581 6.484643 GCTAGGAATCTGAAAATGATGCTGTA 59.515 38.462 0.00 0.00 0.00 2.74
2103 2582 5.298777 GCTAGGAATCTGAAAATGATGCTGT 59.701 40.000 0.00 0.00 0.00 4.40
2104 2583 5.298527 TGCTAGGAATCTGAAAATGATGCTG 59.701 40.000 0.00 0.00 0.00 4.41
2105 2584 5.443283 TGCTAGGAATCTGAAAATGATGCT 58.557 37.500 0.00 0.00 0.00 3.79
2106 2585 5.762825 TGCTAGGAATCTGAAAATGATGC 57.237 39.130 0.00 0.00 0.00 3.91
2107 2586 7.330900 AGTTGCTAGGAATCTGAAAATGATG 57.669 36.000 0.00 0.00 0.00 3.07
2108 2587 9.466497 TTTAGTTGCTAGGAATCTGAAAATGAT 57.534 29.630 0.00 0.00 0.00 2.45
2109 2588 8.862325 TTTAGTTGCTAGGAATCTGAAAATGA 57.138 30.769 0.00 0.00 0.00 2.57
2110 2589 8.186821 CCTTTAGTTGCTAGGAATCTGAAAATG 58.813 37.037 0.00 0.00 0.00 2.32
2111 2590 7.340487 CCCTTTAGTTGCTAGGAATCTGAAAAT 59.660 37.037 0.00 0.00 0.00 1.82
2112 2591 6.659242 CCCTTTAGTTGCTAGGAATCTGAAAA 59.341 38.462 0.00 0.00 0.00 2.29
2113 2592 6.180472 CCCTTTAGTTGCTAGGAATCTGAAA 58.820 40.000 0.00 0.00 0.00 2.69
2114 2593 5.339200 CCCCTTTAGTTGCTAGGAATCTGAA 60.339 44.000 0.00 2.47 0.00 3.02
2115 2594 4.164221 CCCCTTTAGTTGCTAGGAATCTGA 59.836 45.833 0.00 0.00 0.00 3.27
2116 2595 4.164221 TCCCCTTTAGTTGCTAGGAATCTG 59.836 45.833 0.00 0.00 0.00 2.90
2117 2596 4.371681 TCCCCTTTAGTTGCTAGGAATCT 58.628 43.478 0.00 2.42 0.00 2.40
2118 2597 4.772886 TCCCCTTTAGTTGCTAGGAATC 57.227 45.455 0.00 0.00 0.00 2.52
2119 2598 5.530176 TTTCCCCTTTAGTTGCTAGGAAT 57.470 39.130 0.00 0.00 32.29 3.01
2120 2599 5.327737 TTTTCCCCTTTAGTTGCTAGGAA 57.672 39.130 0.00 0.00 0.00 3.36
2121 2600 5.327737 TTTTTCCCCTTTAGTTGCTAGGA 57.672 39.130 0.00 0.00 0.00 2.94
2140 2619 2.880268 GCAGCTGCCATTTTTCCTTTTT 59.120 40.909 28.76 0.00 34.31 1.94
2141 2620 2.158784 TGCAGCTGCCATTTTTCCTTTT 60.159 40.909 34.64 0.00 41.18 2.27
2142 2621 1.417145 TGCAGCTGCCATTTTTCCTTT 59.583 42.857 34.64 0.00 41.18 3.11
2143 2622 1.050204 TGCAGCTGCCATTTTTCCTT 58.950 45.000 34.64 0.00 41.18 3.36
2144 2623 1.206371 GATGCAGCTGCCATTTTTCCT 59.794 47.619 34.64 8.67 41.18 3.36
2145 2624 1.648504 GATGCAGCTGCCATTTTTCC 58.351 50.000 34.64 12.32 41.18 3.13
2146 2625 1.648504 GGATGCAGCTGCCATTTTTC 58.351 50.000 34.64 19.86 41.18 2.29
2147 2626 0.251073 GGGATGCAGCTGCCATTTTT 59.749 50.000 34.64 13.06 41.18 1.94
2148 2627 0.616679 AGGGATGCAGCTGCCATTTT 60.617 50.000 34.64 15.56 41.18 1.82
2149 2628 0.616679 AAGGGATGCAGCTGCCATTT 60.617 50.000 34.64 18.55 41.18 2.32
2150 2629 0.616679 AAAGGGATGCAGCTGCCATT 60.617 50.000 34.64 20.46 41.18 3.16
2151 2630 0.259647 TAAAGGGATGCAGCTGCCAT 59.740 50.000 34.64 26.13 41.18 4.40
2152 2631 0.680921 GTAAAGGGATGCAGCTGCCA 60.681 55.000 34.64 22.77 41.18 4.92
2153 2632 0.394899 AGTAAAGGGATGCAGCTGCC 60.395 55.000 34.64 20.55 41.18 4.85
2154 2633 1.133790 CAAGTAAAGGGATGCAGCTGC 59.866 52.381 31.89 31.89 42.50 5.25
2155 2634 1.133790 GCAAGTAAAGGGATGCAGCTG 59.866 52.381 10.11 10.11 38.63 4.24
2156 2635 1.272092 TGCAAGTAAAGGGATGCAGCT 60.272 47.619 0.22 0.00 43.32 4.24
2157 2636 1.176527 TGCAAGTAAAGGGATGCAGC 58.823 50.000 0.00 0.00 43.32 5.25
2159 2638 1.545582 GCTTGCAAGTAAAGGGATGCA 59.454 47.619 26.55 0.00 46.21 3.96
2160 2639 1.545582 TGCTTGCAAGTAAAGGGATGC 59.454 47.619 26.55 10.38 39.22 3.91
2161 2640 3.940209 TTGCTTGCAAGTAAAGGGATG 57.060 42.857 25.14 0.00 0.00 3.51
2162 2641 6.796785 ATTATTGCTTGCAAGTAAAGGGAT 57.203 33.333 29.64 17.35 34.35 3.85
2163 2642 7.559533 TCATATTATTGCTTGCAAGTAAAGGGA 59.440 33.333 29.64 18.75 34.35 4.20
2164 2643 7.715657 TCATATTATTGCTTGCAAGTAAAGGG 58.284 34.615 29.64 17.16 34.35 3.95
2165 2644 8.408601 ACTCATATTATTGCTTGCAAGTAAAGG 58.591 33.333 29.64 17.03 34.35 3.11
2206 2685 8.954350 AGGTTTTGATTAGAAGTGATCATCTTG 58.046 33.333 13.14 0.00 32.73 3.02
2214 2693 7.509546 ACTGAAGAGGTTTTGATTAGAAGTGA 58.490 34.615 0.00 0.00 0.00 3.41
2238 2717 4.727507 TTTCTAGCAGATGGAGTGAGAC 57.272 45.455 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.