Multiple sequence alignment - TraesCS1A01G213100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G213100 chr1A 100.000 5673 0 0 1 5673 376513887 376508215 0.000000e+00 10477
1 TraesCS1A01G213100 chr1B 93.439 2454 92 24 1 2421 407305850 407303433 0.000000e+00 3576
2 TraesCS1A01G213100 chr1B 93.601 2313 93 20 3122 5404 407303449 407301162 0.000000e+00 3400
3 TraesCS1A01G213100 chr1B 91.292 712 57 5 2413 3120 651903079 651902369 0.000000e+00 966
4 TraesCS1A01G213100 chr1B 90.909 704 62 2 2418 3120 669072402 669071700 0.000000e+00 944
5 TraesCS1A01G213100 chr1D 91.361 1690 70 29 1 1662 301640834 301639193 0.000000e+00 2242
6 TraesCS1A01G213100 chr1D 92.028 1129 48 22 4330 5450 301636296 301635202 0.000000e+00 1548
7 TraesCS1A01G213100 chr1D 89.683 853 43 16 3429 4272 301637334 301636518 0.000000e+00 1046
8 TraesCS1A01G213100 chr1D 93.030 703 47 2 2418 3120 492429437 492430137 0.000000e+00 1026
9 TraesCS1A01G213100 chr1D 84.211 171 20 5 2094 2264 301637725 301637562 5.880000e-35 159
10 TraesCS1A01G213100 chr2D 92.919 692 47 2 2430 3120 546412172 546411482 0.000000e+00 1005
11 TraesCS1A01G213100 chr2D 88.462 130 14 1 5535 5663 644135084 644135213 7.610000e-34 156
12 TraesCS1A01G213100 chr4D 92.057 705 54 2 2418 3120 483619149 483619853 0.000000e+00 990
13 TraesCS1A01G213100 chr3A 91.903 704 55 2 2418 3120 100863661 100864363 0.000000e+00 983
14 TraesCS1A01G213100 chr3A 91.274 722 57 6 2402 3120 703806844 703807562 0.000000e+00 979
15 TraesCS1A01G213100 chr3A 91.501 706 56 4 2417 3120 127190847 127190144 0.000000e+00 968
16 TraesCS1A01G213100 chr3A 86.232 138 16 3 5528 5663 644611092 644611228 4.580000e-31 147
17 TraesCS1A01G213100 chr2B 90.730 712 63 3 2411 3120 669239042 669239752 0.000000e+00 946
18 TraesCS1A01G213100 chr2A 89.313 131 13 1 5534 5663 42930539 42930669 4.550000e-36 163
19 TraesCS1A01G213100 chr7B 88.636 132 12 3 5534 5663 685970317 685970187 2.120000e-34 158
20 TraesCS1A01G213100 chr4B 88.462 130 13 2 5535 5663 610119098 610118970 7.610000e-34 156
21 TraesCS1A01G213100 chr6B 87.786 131 15 1 5534 5663 3053474 3053344 9.840000e-33 152
22 TraesCS1A01G213100 chr6A 87.786 131 14 2 5534 5663 107694738 107694609 9.840000e-33 152
23 TraesCS1A01G213100 chr6A 84.932 146 19 3 5520 5663 596702146 596702002 1.650000e-30 145
24 TraesCS1A01G213100 chr4A 87.786 131 15 1 5534 5663 317070541 317070411 9.840000e-33 152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G213100 chr1A 376508215 376513887 5672 True 10477.00 10477 100.00000 1 5673 1 chr1A.!!$R1 5672
1 TraesCS1A01G213100 chr1B 407301162 407305850 4688 True 3488.00 3576 93.52000 1 5404 2 chr1B.!!$R3 5403
2 TraesCS1A01G213100 chr1B 651902369 651903079 710 True 966.00 966 91.29200 2413 3120 1 chr1B.!!$R1 707
3 TraesCS1A01G213100 chr1B 669071700 669072402 702 True 944.00 944 90.90900 2418 3120 1 chr1B.!!$R2 702
4 TraesCS1A01G213100 chr1D 301635202 301640834 5632 True 1248.75 2242 89.32075 1 5450 4 chr1D.!!$R1 5449
5 TraesCS1A01G213100 chr1D 492429437 492430137 700 False 1026.00 1026 93.03000 2418 3120 1 chr1D.!!$F1 702
6 TraesCS1A01G213100 chr2D 546411482 546412172 690 True 1005.00 1005 92.91900 2430 3120 1 chr2D.!!$R1 690
7 TraesCS1A01G213100 chr4D 483619149 483619853 704 False 990.00 990 92.05700 2418 3120 1 chr4D.!!$F1 702
8 TraesCS1A01G213100 chr3A 100863661 100864363 702 False 983.00 983 91.90300 2418 3120 1 chr3A.!!$F1 702
9 TraesCS1A01G213100 chr3A 703806844 703807562 718 False 979.00 979 91.27400 2402 3120 1 chr3A.!!$F3 718
10 TraesCS1A01G213100 chr3A 127190144 127190847 703 True 968.00 968 91.50100 2417 3120 1 chr3A.!!$R1 703
11 TraesCS1A01G213100 chr2B 669239042 669239752 710 False 946.00 946 90.73000 2411 3120 1 chr2B.!!$F1 709

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
949 976 0.035056 CATTCCAGAGGTGGTGGGTC 60.035 60.0 0.00 0.0 45.28 4.46 F
962 989 0.249996 GTGGGTCGAAAACTCCCGAA 60.250 55.0 3.79 0.0 43.75 4.30 F
2789 3932 0.179161 CACGAGTCACCCTCACGATC 60.179 60.0 0.00 0.0 40.48 3.69 F
3169 4312 0.913451 AAGCTGGGAGAGGTGCATCT 60.913 55.0 0.00 0.0 30.84 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2789 3932 0.817654 TGCATCAGGTGTCTAGACGG 59.182 55.000 17.85 7.7 0.00 4.79 R
2880 4023 2.301296 CCATGCCTACAGATCCTACTGG 59.699 54.545 0.00 0.0 41.59 4.00 R
4334 5717 0.534412 TGCCAAACAAATATGGGCCG 59.466 50.000 0.00 0.0 43.96 6.13 R
5080 6473 0.038166 TTTCCTGCCTCCATCACCAC 59.962 55.000 0.00 0.0 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 1.328279 CCTGTGACAAAAAGGACCCC 58.672 55.000 0.00 0.00 32.43 4.95
74 75 0.398696 ACCCCGTGTTAGCACAATGA 59.601 50.000 10.49 0.00 45.50 2.57
75 76 1.004277 ACCCCGTGTTAGCACAATGAT 59.996 47.619 10.49 0.00 45.50 2.45
120 121 7.773690 ACACAGACCCCATAGTCAAAATTATAC 59.226 37.037 0.00 0.00 39.34 1.47
124 125 8.432805 AGACCCCATAGTCAAAATTATACTGAG 58.567 37.037 0.00 0.00 39.34 3.35
185 186 7.970384 TGTAGGCTTGTAACTTCGATATTTTG 58.030 34.615 0.00 0.00 0.00 2.44
200 201 5.825679 CGATATTTTGGGGGACAGAACATTA 59.174 40.000 0.00 0.00 0.00 1.90
228 229 1.347707 CAGGGTGACTTCCACTAGCAA 59.652 52.381 0.00 0.00 45.03 3.91
234 235 4.383552 GGTGACTTCCACTAGCAATCTGAT 60.384 45.833 0.00 0.00 45.03 2.90
237 238 5.046376 TGACTTCCACTAGCAATCTGATTGA 60.046 40.000 29.34 12.04 42.83 2.57
244 245 6.261603 CCACTAGCAATCTGATTGATTAAGCA 59.738 38.462 29.34 10.50 43.00 3.91
328 329 3.435275 TCTGAACACTCCAGAGCAGTAT 58.565 45.455 0.00 0.00 35.89 2.12
364 365 3.192001 TCAATGCCAATCAAAGCTCTCAC 59.808 43.478 0.00 0.00 0.00 3.51
379 389 7.840342 AAGCTCTCACTACTTGATAAATGTG 57.160 36.000 0.00 0.00 32.17 3.21
382 392 6.256757 GCTCTCACTACTTGATAAATGTGGAC 59.743 42.308 0.00 0.00 32.17 4.02
400 410 2.986479 GGACAAAATGTTCAATGCGGTC 59.014 45.455 0.00 0.00 0.00 4.79
406 416 1.960417 TGTTCAATGCGGTCTTGACA 58.040 45.000 3.08 0.00 32.57 3.58
410 420 2.293170 TCAATGCGGTCTTGACACAAA 58.707 42.857 3.08 0.00 0.00 2.83
417 427 6.176975 TGCGGTCTTGACACAAAATATTAG 57.823 37.500 3.08 0.00 0.00 1.73
452 477 6.094048 TGCAACAGATTAACTAGGAAGCAATC 59.906 38.462 0.00 0.00 31.87 2.67
454 479 7.467623 CAACAGATTAACTAGGAAGCAATCAC 58.532 38.462 0.00 0.00 33.16 3.06
484 509 7.280769 GCGTGAAAATTCATTCAAAACCTAAC 58.719 34.615 0.00 0.00 40.76 2.34
504 529 0.320374 TGCAAGGAGGAACTACCACG 59.680 55.000 0.00 0.00 43.28 4.94
511 536 2.290093 GGAGGAACTACCACGTCTATCG 59.710 54.545 0.00 0.00 41.55 2.92
554 579 3.365364 GCACCTGAATAAACAGTCTGCAC 60.365 47.826 0.00 0.00 38.45 4.57
577 602 0.888619 TCAGCACCTACTTCCTGTCG 59.111 55.000 0.00 0.00 0.00 4.35
590 615 1.278127 TCCTGTCGAAATTCCCCAGAC 59.722 52.381 7.79 1.16 0.00 3.51
602 627 3.593442 TCCCCAGACTTGACAAATTGT 57.407 42.857 0.00 0.00 0.00 2.71
603 628 3.909732 TCCCCAGACTTGACAAATTGTT 58.090 40.909 0.00 0.00 0.00 2.83
604 629 3.636300 TCCCCAGACTTGACAAATTGTTG 59.364 43.478 0.00 0.00 40.84 3.33
605 630 3.383761 CCCAGACTTGACAAATTGTTGC 58.616 45.455 0.00 0.00 38.39 4.17
606 631 3.068590 CCCAGACTTGACAAATTGTTGCT 59.931 43.478 0.00 0.00 38.39 3.91
607 632 4.293415 CCAGACTTGACAAATTGTTGCTC 58.707 43.478 0.00 0.00 38.39 4.26
608 633 4.037208 CCAGACTTGACAAATTGTTGCTCT 59.963 41.667 0.00 0.00 38.39 4.09
609 634 5.450965 CCAGACTTGACAAATTGTTGCTCTT 60.451 40.000 0.00 0.00 38.39 2.85
611 636 5.126061 AGACTTGACAAATTGTTGCTCTTGT 59.874 36.000 0.00 0.00 38.39 3.16
612 637 6.318648 AGACTTGACAAATTGTTGCTCTTGTA 59.681 34.615 0.00 0.00 38.39 2.41
613 638 7.013655 AGACTTGACAAATTGTTGCTCTTGTAT 59.986 33.333 0.00 0.00 38.39 2.29
614 639 7.141363 ACTTGACAAATTGTTGCTCTTGTATC 58.859 34.615 0.00 0.00 38.39 2.24
615 640 6.631971 TGACAAATTGTTGCTCTTGTATCA 57.368 33.333 0.00 0.00 38.39 2.15
616 641 6.437928 TGACAAATTGTTGCTCTTGTATCAC 58.562 36.000 0.00 0.00 38.39 3.06
617 642 6.039159 TGACAAATTGTTGCTCTTGTATCACA 59.961 34.615 0.00 0.00 38.39 3.58
618 643 6.985117 ACAAATTGTTGCTCTTGTATCACAT 58.015 32.000 0.00 0.00 38.39 3.21
619 644 7.086376 ACAAATTGTTGCTCTTGTATCACATC 58.914 34.615 0.00 0.00 38.39 3.06
620 645 5.824904 ATTGTTGCTCTTGTATCACATCC 57.175 39.130 0.00 0.00 0.00 3.51
621 646 4.284829 TGTTGCTCTTGTATCACATCCA 57.715 40.909 0.00 0.00 0.00 3.41
622 647 4.650734 TGTTGCTCTTGTATCACATCCAA 58.349 39.130 0.00 0.00 0.00 3.53
623 648 5.069318 TGTTGCTCTTGTATCACATCCAAA 58.931 37.500 0.00 0.00 0.00 3.28
624 649 5.048782 TGTTGCTCTTGTATCACATCCAAAC 60.049 40.000 0.00 0.00 0.00 2.93
625 650 3.684305 TGCTCTTGTATCACATCCAAACG 59.316 43.478 0.00 0.00 0.00 3.60
626 651 3.063997 GCTCTTGTATCACATCCAAACGG 59.936 47.826 0.00 0.00 0.00 4.44
627 652 4.503910 CTCTTGTATCACATCCAAACGGA 58.496 43.478 0.00 0.00 36.85 4.69
628 653 5.097742 TCTTGTATCACATCCAAACGGAT 57.902 39.130 0.00 0.00 44.60 4.18
636 661 1.529226 ATCCAAACGGATGCGAAACA 58.471 45.000 15.49 0.00 41.99 2.83
637 662 0.871722 TCCAAACGGATGCGAAACAG 59.128 50.000 15.49 0.00 0.00 3.16
638 663 0.729140 CCAAACGGATGCGAAACAGC 60.729 55.000 15.49 0.00 37.71 4.40
675 701 1.074850 GAGGAAGAGAGGGGGAGGG 60.075 68.421 0.00 0.00 0.00 4.30
676 702 1.550374 AGGAAGAGAGGGGGAGGGA 60.550 63.158 0.00 0.00 0.00 4.20
815 841 1.062685 CATCTCCTGGTCGTCGTCG 59.937 63.158 0.00 0.00 38.55 5.12
816 842 1.376942 ATCTCCTGGTCGTCGTCGT 60.377 57.895 1.33 0.00 38.33 4.34
817 843 1.367599 ATCTCCTGGTCGTCGTCGTC 61.368 60.000 1.33 0.00 38.33 4.20
818 844 3.364249 CTCCTGGTCGTCGTCGTCG 62.364 68.421 5.50 5.50 38.33 5.12
819 845 3.720193 CCTGGTCGTCGTCGTCGT 61.720 66.667 11.41 0.00 38.33 4.34
820 846 2.202146 CTGGTCGTCGTCGTCGTC 60.202 66.667 11.41 6.21 38.33 4.20
821 847 3.954218 CTGGTCGTCGTCGTCGTCG 62.954 68.421 14.18 14.18 46.06 5.12
920 946 0.947244 CCATGTAAGGAGCCATTCGC 59.053 55.000 0.00 0.00 37.98 4.70
923 949 2.418368 TGTAAGGAGCCATTCGCAAT 57.582 45.000 0.00 0.00 41.38 3.56
949 976 0.035056 CATTCCAGAGGTGGTGGGTC 60.035 60.000 0.00 0.00 45.28 4.46
950 977 1.553690 ATTCCAGAGGTGGTGGGTCG 61.554 60.000 0.00 0.00 45.28 4.79
962 989 0.249996 GTGGGTCGAAAACTCCCGAA 60.250 55.000 3.79 0.00 43.75 4.30
975 1002 0.616679 TCCCGAACCCCCTAGAACAG 60.617 60.000 0.00 0.00 0.00 3.16
1158 1191 1.687297 CTTCCCCCTCCTTCGTAGGC 61.687 65.000 2.65 0.00 41.69 3.93
1168 1201 2.494445 TCGTAGGCGATGCTGGTG 59.506 61.111 0.00 0.00 42.81 4.17
1169 1202 2.586079 CGTAGGCGATGCTGGTGG 60.586 66.667 0.00 0.00 41.33 4.61
1170 1203 2.900273 GTAGGCGATGCTGGTGGA 59.100 61.111 0.00 0.00 0.00 4.02
1171 1204 1.447643 GTAGGCGATGCTGGTGGAT 59.552 57.895 0.00 0.00 0.00 3.41
1172 1205 0.882042 GTAGGCGATGCTGGTGGATG 60.882 60.000 0.00 0.00 0.00 3.51
1173 1206 1.048160 TAGGCGATGCTGGTGGATGA 61.048 55.000 0.00 0.00 0.00 2.92
1174 1207 2.182842 GGCGATGCTGGTGGATGAC 61.183 63.158 0.00 0.00 0.00 3.06
1201 1246 3.290710 CTGGATTTGATTTGACCGGGAT 58.709 45.455 6.32 0.00 0.00 3.85
1262 1307 2.093973 ACCAGATCAACCTCATCGACAC 60.094 50.000 0.00 0.00 0.00 3.67
1316 1361 1.062044 ACCTCTCCTTACATCCTCCCC 60.062 57.143 0.00 0.00 0.00 4.81
1386 1431 5.530915 TGCCTTCTTCAAAATATATCCGTGG 59.469 40.000 0.00 0.00 0.00 4.94
1419 1464 4.573021 TGTGGAATGAGATTGACCATGA 57.427 40.909 0.00 0.00 33.19 3.07
1532 1577 8.739972 ACAGGTTACAAAATATCACTCAAATCC 58.260 33.333 0.00 0.00 0.00 3.01
1700 1745 7.503230 ACTCTTGTTCTACCTACTAATCCTAGC 59.497 40.741 0.00 0.00 0.00 3.42
1738 1783 5.599999 ACCAGACGAATGCTTTAGATACT 57.400 39.130 0.00 0.00 0.00 2.12
1937 1983 6.674694 ATCTGAAAATGATGCTGTACTCAC 57.325 37.500 0.00 0.00 0.00 3.51
1997 2043 9.736023 GTAACTTCAACAAAAGTGAATCAATCT 57.264 29.630 0.00 0.00 39.40 2.40
2382 3522 7.891498 ATTGTACCTGTTTTCCTTGTTAAGT 57.109 32.000 0.00 0.00 0.00 2.24
2469 3610 8.031277 GCCCTCATATTCATTATGAAAATGGAC 58.969 37.037 11.88 0.27 44.72 4.02
2512 3655 6.586344 ACCAACCATTACATCACTGATCTAG 58.414 40.000 0.00 0.00 0.00 2.43
2535 3678 2.513204 CACCAGGATGCTCCAGCG 60.513 66.667 0.00 0.00 45.83 5.18
2558 3701 1.331756 GCAAGCCTAATCATCACACCG 59.668 52.381 0.00 0.00 0.00 4.94
2609 3752 3.589735 TCAATCTACCCAAAACTAGCCCA 59.410 43.478 0.00 0.00 0.00 5.36
2614 3757 3.322191 ACCCAAAACTAGCCCAGAAAA 57.678 42.857 0.00 0.00 0.00 2.29
2632 3775 3.679824 AAAGGCCTAGTGTCACACTAC 57.320 47.619 14.00 5.34 43.46 2.73
2789 3932 0.179161 CACGAGTCACCCTCACGATC 60.179 60.000 0.00 0.00 40.48 3.69
2807 3950 1.103803 TCCGTCTAGACACCTGATGC 58.896 55.000 22.37 0.00 0.00 3.91
2846 3989 5.467705 CCTCTTTTCTGCAGATTTTTCCAG 58.532 41.667 19.04 7.30 0.00 3.86
2880 4023 6.691508 AGGGAACAAACAAGAAAGATAATGC 58.308 36.000 0.00 0.00 0.00 3.56
2901 4044 2.301296 CCAGTAGGATCTGTAGGCATGG 59.699 54.545 0.00 0.00 36.89 3.66
2914 4057 2.041701 AGGCATGGCACTTTGAAAACT 58.958 42.857 22.64 0.00 0.00 2.66
3121 4264 9.918630 ACAAGAGAAAAATAAATGATTCACAGG 57.081 29.630 0.00 0.00 0.00 4.00
3122 4265 9.918630 CAAGAGAAAAATAAATGATTCACAGGT 57.081 29.630 0.00 0.00 0.00 4.00
3169 4312 0.913451 AAGCTGGGAGAGGTGCATCT 60.913 55.000 0.00 0.00 30.84 2.90
3176 4319 2.290577 GGGAGAGGTGCATCTGTTTCTT 60.291 50.000 2.86 0.00 0.00 2.52
3227 4370 2.293184 ACTGTCATGAGGGGTGGATAGT 60.293 50.000 0.00 0.00 0.00 2.12
3234 4377 2.835764 TGAGGGGTGGATAGTACAACAC 59.164 50.000 0.00 0.00 0.00 3.32
3339 4483 4.853924 ACAATTGGCAAGAGTAACCAAG 57.146 40.909 10.83 0.00 46.08 3.61
3647 4866 5.705609 AGGTAAAGGTTTGCACAGTAATG 57.294 39.130 0.00 0.00 0.00 1.90
3658 4877 5.598416 TGCACAGTAATGTACTATCTGCT 57.402 39.130 0.00 0.00 37.23 4.24
3729 4948 2.378445 TGCAGTAGCGCTGTTGAATA 57.622 45.000 22.90 5.66 46.64 1.75
3843 5062 2.627148 TGGCCAGTACCCTACAGTTA 57.373 50.000 0.00 0.00 0.00 2.24
3850 5069 5.303589 GCCAGTACCCTACAGTTATACATGA 59.696 44.000 0.00 0.00 0.00 3.07
4074 5294 2.375146 GGGTGGACAGTTCTGTTGTTT 58.625 47.619 6.91 0.00 0.00 2.83
4244 5464 1.485066 AGGCCATCGATTCGGTAAAGT 59.515 47.619 5.01 0.00 0.00 2.66
4250 5470 5.448632 GCCATCGATTCGGTAAAGTTCAAAT 60.449 40.000 6.18 0.00 0.00 2.32
4287 5647 4.209288 CCAAGTACAACATAGCGTCTATGC 59.791 45.833 19.97 8.86 0.00 3.14
4328 5689 7.148869 CGAAACACAAACTTCGATACTGTGATA 60.149 37.037 18.61 0.00 45.65 2.15
4334 5717 9.084164 ACAAACTTCGATACTGTGATACATAAC 57.916 33.333 0.00 0.00 0.00 1.89
4387 5770 7.036220 CGGCTTCGACCTATAATATTCTGAAT 58.964 38.462 8.14 8.14 35.61 2.57
4446 5829 5.471257 GTTTGGAGTCGACTCTTAATCACT 58.529 41.667 36.98 5.92 42.48 3.41
4456 5839 5.070770 ACTCTTAATCACTGTCAGCAGAG 57.929 43.478 0.00 4.39 45.28 3.35
4507 5890 2.891112 CTGACATGAGACCTCTCTTGC 58.109 52.381 14.95 10.07 46.19 4.01
4608 5991 2.099405 CCCTGGTTGTGAAGTGTGTTT 58.901 47.619 0.00 0.00 0.00 2.83
4667 6050 9.201989 TCTACCTTGTGTACATCAGAATAATCT 57.798 33.333 0.00 0.00 35.88 2.40
4794 6177 0.661187 GGCGTGTGCACTGATGTTTG 60.661 55.000 19.41 0.03 45.35 2.93
4804 6187 3.363970 GCACTGATGTTTGTACTTGTCCG 60.364 47.826 0.00 0.00 0.00 4.79
4817 6203 3.649843 ACTTGTCCGGTATCTCCCATAA 58.350 45.455 0.00 0.00 0.00 1.90
4840 6226 2.920724 TGGAAGGTTCGATTCACACA 57.079 45.000 0.11 0.00 0.00 3.72
4867 6254 0.031994 AAATTGTGGTGGCGCAGAAC 59.968 50.000 10.83 3.86 0.00 3.01
4886 6273 1.202098 ACGATTTTGCGCCGGTAAATC 60.202 47.619 4.18 13.47 35.79 2.17
4889 6279 1.524848 TTTTGCGCCGGTAAATCAGA 58.475 45.000 4.18 0.00 0.00 3.27
4903 6293 7.029563 CGGTAAATCAGAAGGAGAAAAATTGG 58.970 38.462 0.00 0.00 0.00 3.16
5023 6415 3.774216 GGCTGAGATATATCCTGCTTCCT 59.226 47.826 21.18 1.46 0.00 3.36
5095 6488 1.377725 GTGGTGGTGATGGAGGCAG 60.378 63.158 0.00 0.00 0.00 4.85
5111 6504 1.478288 GGCAGGAAAGGGAGATGGATG 60.478 57.143 0.00 0.00 0.00 3.51
5218 6611 3.435186 GAGCTCCGGCCAACTTGC 61.435 66.667 2.24 0.00 39.73 4.01
5237 6630 2.433970 TGCCCTTGTTTTCTTTTGGAGG 59.566 45.455 0.00 0.00 0.00 4.30
5238 6631 2.698274 GCCCTTGTTTTCTTTTGGAGGA 59.302 45.455 0.00 0.00 0.00 3.71
5274 6667 3.854784 GCCAGTTTGTTCTTGTCTGCATC 60.855 47.826 0.00 0.00 0.00 3.91
5398 6791 1.228398 TTCTGATTGCACCGGCCAA 60.228 52.632 0.00 5.89 40.13 4.52
5424 6817 0.386100 CGATCAGTACGCATCGGAGG 60.386 60.000 17.20 0.00 38.60 4.30
5428 6821 1.748122 AGTACGCATCGGAGGACGT 60.748 57.895 14.22 14.22 44.69 4.34
5446 6839 3.242897 TTGGTACGGGCTGGGTTCG 62.243 63.158 0.00 0.00 0.00 3.95
5450 6843 2.428925 TACGGGCTGGGTTCGGATC 61.429 63.158 0.00 0.00 0.00 3.36
5451 6844 2.866523 TACGGGCTGGGTTCGGATCT 62.867 60.000 0.00 0.00 0.00 2.75
5452 6845 2.190578 GGGCTGGGTTCGGATCTG 59.809 66.667 0.00 0.00 0.00 2.90
5453 6846 2.514824 GGCTGGGTTCGGATCTGC 60.515 66.667 0.00 0.00 0.00 4.26
5454 6847 2.892425 GCTGGGTTCGGATCTGCG 60.892 66.667 0.00 0.00 0.00 5.18
5455 6848 2.202932 CTGGGTTCGGATCTGCGG 60.203 66.667 0.00 0.00 0.00 5.69
5456 6849 2.682136 TGGGTTCGGATCTGCGGA 60.682 61.111 0.00 0.00 0.00 5.54
5457 6850 2.202892 GGGTTCGGATCTGCGGAC 60.203 66.667 0.00 0.00 0.00 4.79
5458 6851 2.202892 GGTTCGGATCTGCGGACC 60.203 66.667 5.77 5.77 0.00 4.46
5459 6852 2.577059 GTTCGGATCTGCGGACCA 59.423 61.111 0.00 0.00 0.00 4.02
5460 6853 1.144057 GTTCGGATCTGCGGACCAT 59.856 57.895 0.00 0.00 0.00 3.55
5461 6854 1.143838 TTCGGATCTGCGGACCATG 59.856 57.895 0.00 0.00 0.00 3.66
5462 6855 2.923426 TTCGGATCTGCGGACCATGC 62.923 60.000 0.00 0.00 0.00 4.06
5463 6856 2.592861 GGATCTGCGGACCATGCC 60.593 66.667 0.00 0.00 0.00 4.40
5464 6857 2.190313 GATCTGCGGACCATGCCA 59.810 61.111 0.00 0.00 0.00 4.92
5465 6858 2.124570 ATCTGCGGACCATGCCAC 60.125 61.111 0.00 0.00 0.00 5.01
5466 6859 3.704231 ATCTGCGGACCATGCCACC 62.704 63.158 0.00 0.00 0.00 4.61
5467 6860 4.415150 CTGCGGACCATGCCACCT 62.415 66.667 0.00 0.00 0.00 4.00
5468 6861 3.006133 TGCGGACCATGCCACCTA 61.006 61.111 0.00 0.00 0.00 3.08
5469 6862 2.329539 CTGCGGACCATGCCACCTAT 62.330 60.000 0.00 0.00 0.00 2.57
5470 6863 1.893808 GCGGACCATGCCACCTATG 60.894 63.158 0.00 0.00 0.00 2.23
5488 6881 5.502153 CTATGGGAGGACGCATATACTAC 57.498 47.826 0.00 0.00 45.86 2.73
5489 6882 3.232720 TGGGAGGACGCATATACTACA 57.767 47.619 0.00 0.00 34.12 2.74
5490 6883 3.568443 TGGGAGGACGCATATACTACAA 58.432 45.455 0.00 0.00 34.12 2.41
5491 6884 4.157246 TGGGAGGACGCATATACTACAAT 58.843 43.478 0.00 0.00 34.12 2.71
5492 6885 4.591498 TGGGAGGACGCATATACTACAATT 59.409 41.667 0.00 0.00 34.12 2.32
5493 6886 4.929808 GGGAGGACGCATATACTACAATTG 59.070 45.833 3.24 3.24 0.00 2.32
5494 6887 5.510861 GGGAGGACGCATATACTACAATTGT 60.511 44.000 16.68 16.68 0.00 2.71
5495 6888 6.294899 GGGAGGACGCATATACTACAATTGTA 60.295 42.308 17.16 17.16 0.00 2.41
5496 6889 7.149973 GGAGGACGCATATACTACAATTGTAA 58.850 38.462 18.55 6.13 0.00 2.41
5497 6890 7.817962 GGAGGACGCATATACTACAATTGTAAT 59.182 37.037 18.55 12.02 0.00 1.89
5498 6891 9.204570 GAGGACGCATATACTACAATTGTAATT 57.795 33.333 18.55 11.26 0.00 1.40
5517 6910 8.480643 TGTAATTATTTTTGTATTTTGCGGGG 57.519 30.769 0.00 0.00 0.00 5.73
5518 6911 8.311836 TGTAATTATTTTTGTATTTTGCGGGGA 58.688 29.630 0.00 0.00 0.00 4.81
5519 6912 7.603963 AATTATTTTTGTATTTTGCGGGGAC 57.396 32.000 0.00 0.00 0.00 4.46
5520 6913 4.608948 ATTTTTGTATTTTGCGGGGACA 57.391 36.364 0.00 0.00 0.00 4.02
5521 6914 3.372660 TTTTGTATTTTGCGGGGACAC 57.627 42.857 0.00 0.00 0.00 3.67
5522 6915 0.875728 TTGTATTTTGCGGGGACACG 59.124 50.000 0.00 0.00 0.00 4.49
5537 6930 2.800096 CACGCAGGTGCAATTCAAC 58.200 52.632 2.33 0.00 42.21 3.18
5538 6931 0.030504 CACGCAGGTGCAATTCAACA 59.969 50.000 2.33 0.00 42.21 3.33
5539 6932 0.961019 ACGCAGGTGCAATTCAACAT 59.039 45.000 2.33 0.00 42.21 2.71
5540 6933 1.336148 ACGCAGGTGCAATTCAACATG 60.336 47.619 2.33 0.00 42.21 3.21
5541 6934 1.336148 CGCAGGTGCAATTCAACATGT 60.336 47.619 2.33 0.00 42.21 3.21
5542 6935 2.063266 GCAGGTGCAATTCAACATGTG 58.937 47.619 0.00 0.00 41.59 3.21
5543 6936 2.679450 CAGGTGCAATTCAACATGTGG 58.321 47.619 0.00 0.00 33.90 4.17
5544 6937 2.036217 CAGGTGCAATTCAACATGTGGT 59.964 45.455 0.00 0.00 33.90 4.16
5545 6938 2.699846 AGGTGCAATTCAACATGTGGTT 59.300 40.909 0.00 0.00 41.47 3.67
5557 6950 4.908601 ACATGTGGTTGAGATGGTTAGA 57.091 40.909 0.00 0.00 29.21 2.10
5558 6951 5.441718 ACATGTGGTTGAGATGGTTAGAT 57.558 39.130 0.00 0.00 29.21 1.98
5559 6952 5.188434 ACATGTGGTTGAGATGGTTAGATG 58.812 41.667 0.00 0.00 29.21 2.90
5560 6953 4.220693 TGTGGTTGAGATGGTTAGATGG 57.779 45.455 0.00 0.00 0.00 3.51
5561 6954 3.843619 TGTGGTTGAGATGGTTAGATGGA 59.156 43.478 0.00 0.00 0.00 3.41
5562 6955 4.192317 GTGGTTGAGATGGTTAGATGGAC 58.808 47.826 0.00 0.00 0.00 4.02
5563 6956 3.843619 TGGTTGAGATGGTTAGATGGACA 59.156 43.478 0.00 0.00 0.00 4.02
5564 6957 4.080919 TGGTTGAGATGGTTAGATGGACAG 60.081 45.833 0.00 0.00 0.00 3.51
5565 6958 4.080863 GGTTGAGATGGTTAGATGGACAGT 60.081 45.833 0.00 0.00 0.00 3.55
5566 6959 4.743057 TGAGATGGTTAGATGGACAGTG 57.257 45.455 0.00 0.00 0.00 3.66
5567 6960 3.452264 TGAGATGGTTAGATGGACAGTGG 59.548 47.826 0.00 0.00 0.00 4.00
5568 6961 3.452627 GAGATGGTTAGATGGACAGTGGT 59.547 47.826 0.00 0.00 0.00 4.16
5569 6962 4.620723 AGATGGTTAGATGGACAGTGGTA 58.379 43.478 0.00 0.00 0.00 3.25
5570 6963 5.219739 AGATGGTTAGATGGACAGTGGTAT 58.780 41.667 0.00 0.00 0.00 2.73
5571 6964 5.305644 AGATGGTTAGATGGACAGTGGTATC 59.694 44.000 0.00 0.00 0.00 2.24
5572 6965 3.709653 TGGTTAGATGGACAGTGGTATCC 59.290 47.826 0.00 0.00 35.37 2.59
5573 6966 3.071167 GGTTAGATGGACAGTGGTATCCC 59.929 52.174 0.00 0.00 33.69 3.85
5574 6967 2.568546 AGATGGACAGTGGTATCCCA 57.431 50.000 0.00 0.00 38.87 4.37
5575 6968 2.402564 AGATGGACAGTGGTATCCCAG 58.597 52.381 0.00 0.00 42.94 4.45
5576 6969 2.119495 GATGGACAGTGGTATCCCAGT 58.881 52.381 0.00 0.00 45.74 4.00
5577 6970 2.038863 TGGACAGTGGTATCCCAGTT 57.961 50.000 0.00 0.00 41.95 3.16
5578 6971 1.906574 TGGACAGTGGTATCCCAGTTC 59.093 52.381 0.00 0.00 41.95 3.01
5579 6972 1.906574 GGACAGTGGTATCCCAGTTCA 59.093 52.381 0.00 0.00 41.95 3.18
5580 6973 2.505819 GGACAGTGGTATCCCAGTTCAT 59.494 50.000 0.00 0.00 41.95 2.57
5581 6974 3.432326 GGACAGTGGTATCCCAGTTCATC 60.432 52.174 0.00 0.00 41.95 2.92
5582 6975 3.181329 ACAGTGGTATCCCAGTTCATCA 58.819 45.455 0.00 0.00 41.95 3.07
5583 6976 3.198635 ACAGTGGTATCCCAGTTCATCAG 59.801 47.826 0.00 0.00 41.95 2.90
5584 6977 2.774234 AGTGGTATCCCAGTTCATCAGG 59.226 50.000 0.00 0.00 41.95 3.86
5585 6978 2.771943 GTGGTATCCCAGTTCATCAGGA 59.228 50.000 0.00 0.00 42.94 3.86
5586 6979 3.392616 GTGGTATCCCAGTTCATCAGGAT 59.607 47.826 0.00 0.00 42.94 3.24
5587 6980 4.047166 TGGTATCCCAGTTCATCAGGATT 58.953 43.478 0.00 0.00 39.77 3.01
5588 6981 4.103153 TGGTATCCCAGTTCATCAGGATTC 59.897 45.833 0.00 0.00 39.77 2.52
5589 6982 4.103153 GGTATCCCAGTTCATCAGGATTCA 59.897 45.833 0.00 0.00 39.77 2.57
5590 6983 4.868172 ATCCCAGTTCATCAGGATTCAA 57.132 40.909 0.00 0.00 35.55 2.69
5591 6984 4.656100 TCCCAGTTCATCAGGATTCAAA 57.344 40.909 0.00 0.00 0.00 2.69
5592 6985 5.197224 TCCCAGTTCATCAGGATTCAAAT 57.803 39.130 0.00 0.00 0.00 2.32
5593 6986 5.195940 TCCCAGTTCATCAGGATTCAAATC 58.804 41.667 0.00 0.00 34.66 2.17
5604 6997 1.064654 GATTCAAATCCTGGTGCTCGC 59.935 52.381 0.00 0.00 0.00 5.03
5605 6998 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
5606 6999 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
5607 7000 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
5608 7001 1.203052 CAAATCCTGGTGCTCGCATTT 59.797 47.619 0.00 0.00 0.00 2.32
5609 7002 2.418368 AATCCTGGTGCTCGCATTTA 57.582 45.000 0.00 0.00 0.00 1.40
5610 7003 2.645838 ATCCTGGTGCTCGCATTTAT 57.354 45.000 0.00 0.00 0.00 1.40
5611 7004 1.953559 TCCTGGTGCTCGCATTTATC 58.046 50.000 0.00 0.00 0.00 1.75
5612 7005 1.486310 TCCTGGTGCTCGCATTTATCT 59.514 47.619 0.00 0.00 0.00 1.98
5613 7006 2.092968 TCCTGGTGCTCGCATTTATCTT 60.093 45.455 0.00 0.00 0.00 2.40
5614 7007 2.032550 CCTGGTGCTCGCATTTATCTTG 59.967 50.000 0.00 0.00 0.00 3.02
5615 7008 2.679837 CTGGTGCTCGCATTTATCTTGT 59.320 45.455 0.00 0.00 0.00 3.16
5616 7009 3.867857 TGGTGCTCGCATTTATCTTGTA 58.132 40.909 0.00 0.00 0.00 2.41
5617 7010 4.450976 TGGTGCTCGCATTTATCTTGTAT 58.549 39.130 0.00 0.00 0.00 2.29
5618 7011 4.881273 TGGTGCTCGCATTTATCTTGTATT 59.119 37.500 0.00 0.00 0.00 1.89
5619 7012 5.356751 TGGTGCTCGCATTTATCTTGTATTT 59.643 36.000 0.00 0.00 0.00 1.40
5620 7013 6.540551 TGGTGCTCGCATTTATCTTGTATTTA 59.459 34.615 0.00 0.00 0.00 1.40
5621 7014 7.228507 TGGTGCTCGCATTTATCTTGTATTTAT 59.771 33.333 0.00 0.00 0.00 1.40
5622 7015 8.076178 GGTGCTCGCATTTATCTTGTATTTATT 58.924 33.333 0.00 0.00 0.00 1.40
5623 7016 9.450807 GTGCTCGCATTTATCTTGTATTTATTT 57.549 29.630 0.00 0.00 0.00 1.40
5624 7017 9.663904 TGCTCGCATTTATCTTGTATTTATTTC 57.336 29.630 0.00 0.00 0.00 2.17
5625 7018 9.663904 GCTCGCATTTATCTTGTATTTATTTCA 57.336 29.630 0.00 0.00 0.00 2.69
5636 7029 8.188139 TCTTGTATTTATTTCAAGATTTCCGGC 58.812 33.333 0.00 0.00 41.33 6.13
5637 7030 6.491394 TGTATTTATTTCAAGATTTCCGGCG 58.509 36.000 0.00 0.00 0.00 6.46
5638 7031 5.828299 ATTTATTTCAAGATTTCCGGCGA 57.172 34.783 9.30 0.00 0.00 5.54
5639 7032 5.828299 TTTATTTCAAGATTTCCGGCGAT 57.172 34.783 9.30 0.00 0.00 4.58
5640 7033 6.928979 TTTATTTCAAGATTTCCGGCGATA 57.071 33.333 9.30 0.00 0.00 2.92
5641 7034 4.813296 ATTTCAAGATTTCCGGCGATAC 57.187 40.909 9.30 0.00 0.00 2.24
5642 7035 2.971660 TCAAGATTTCCGGCGATACA 57.028 45.000 9.30 0.00 0.00 2.29
5643 7036 3.469008 TCAAGATTTCCGGCGATACAT 57.531 42.857 9.30 0.00 0.00 2.29
5644 7037 3.804036 TCAAGATTTCCGGCGATACATT 58.196 40.909 9.30 0.00 0.00 2.71
5645 7038 4.196193 TCAAGATTTCCGGCGATACATTT 58.804 39.130 9.30 0.00 0.00 2.32
5646 7039 4.638421 TCAAGATTTCCGGCGATACATTTT 59.362 37.500 9.30 0.00 0.00 1.82
5647 7040 4.813296 AGATTTCCGGCGATACATTTTC 57.187 40.909 9.30 0.00 0.00 2.29
5648 7041 4.196193 AGATTTCCGGCGATACATTTTCA 58.804 39.130 9.30 0.00 0.00 2.69
5649 7042 4.273480 AGATTTCCGGCGATACATTTTCAG 59.727 41.667 9.30 0.00 0.00 3.02
5650 7043 1.948104 TCCGGCGATACATTTTCAGG 58.052 50.000 9.30 0.00 0.00 3.86
5651 7044 0.944386 CCGGCGATACATTTTCAGGG 59.056 55.000 9.30 0.00 0.00 4.45
5652 7045 0.944386 CGGCGATACATTTTCAGGGG 59.056 55.000 0.00 0.00 0.00 4.79
5653 7046 1.318576 GGCGATACATTTTCAGGGGG 58.681 55.000 0.00 0.00 0.00 5.40
5654 7047 1.133915 GGCGATACATTTTCAGGGGGA 60.134 52.381 0.00 0.00 0.00 4.81
5655 7048 2.222027 GCGATACATTTTCAGGGGGAG 58.778 52.381 0.00 0.00 0.00 4.30
5656 7049 2.851195 CGATACATTTTCAGGGGGAGG 58.149 52.381 0.00 0.00 0.00 4.30
5657 7050 2.438021 CGATACATTTTCAGGGGGAGGA 59.562 50.000 0.00 0.00 0.00 3.71
5658 7051 3.495100 CGATACATTTTCAGGGGGAGGAG 60.495 52.174 0.00 0.00 0.00 3.69
5659 7052 2.059756 ACATTTTCAGGGGGAGGAGA 57.940 50.000 0.00 0.00 0.00 3.71
5660 7053 1.636003 ACATTTTCAGGGGGAGGAGAC 59.364 52.381 0.00 0.00 0.00 3.36
5661 7054 0.912486 ATTTTCAGGGGGAGGAGACG 59.088 55.000 0.00 0.00 0.00 4.18
5662 7055 0.473117 TTTTCAGGGGGAGGAGACGT 60.473 55.000 0.00 0.00 0.00 4.34
5663 7056 0.410663 TTTCAGGGGGAGGAGACGTA 59.589 55.000 0.00 0.00 0.00 3.57
5664 7057 0.635009 TTCAGGGGGAGGAGACGTAT 59.365 55.000 0.00 0.00 0.00 3.06
5665 7058 0.185416 TCAGGGGGAGGAGACGTATC 59.815 60.000 0.37 0.37 0.00 2.24
5666 7059 1.150992 AGGGGGAGGAGACGTATCG 59.849 63.158 3.77 0.00 0.00 2.92
5667 7060 1.150081 GGGGGAGGAGACGTATCGA 59.850 63.158 3.77 0.00 0.00 3.59
5668 7061 1.171549 GGGGGAGGAGACGTATCGAC 61.172 65.000 3.77 0.57 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
185 186 1.134220 TGCGATAATGTTCTGTCCCCC 60.134 52.381 0.00 0.00 0.00 5.40
200 201 1.407437 GGAAGTCACCCTGATTGCGAT 60.407 52.381 0.00 0.00 0.00 4.58
228 229 4.769688 TCGTGGTGCTTAATCAATCAGAT 58.230 39.130 0.00 0.00 39.09 2.90
234 235 2.851263 ACCTCGTGGTGCTTAATCAA 57.149 45.000 8.68 0.00 46.51 2.57
328 329 4.511527 TGGCATTGAGAAAGTTGCAAAAA 58.488 34.783 0.00 0.00 36.82 1.94
364 365 9.912634 AACATTTTGTCCACATTTATCAAGTAG 57.087 29.630 0.00 0.00 0.00 2.57
379 389 2.986479 GACCGCATTGAACATTTTGTCC 59.014 45.455 0.00 0.00 0.00 4.02
382 392 4.148696 GTCAAGACCGCATTGAACATTTTG 59.851 41.667 0.00 0.00 38.34 2.44
444 469 1.199789 TCACGCCATTGTGATTGCTTC 59.800 47.619 0.00 0.00 43.62 3.86
452 477 4.685165 TGAATGAATTTTCACGCCATTGTG 59.315 37.500 0.00 0.00 40.49 3.33
454 479 5.842619 TTGAATGAATTTTCACGCCATTG 57.157 34.783 0.00 0.00 40.49 2.82
469 494 5.136828 TCCTTGCAGTTAGGTTTTGAATGA 58.863 37.500 2.88 0.00 34.29 2.57
470 495 5.452078 TCCTTGCAGTTAGGTTTTGAATG 57.548 39.130 2.88 0.00 34.29 2.67
484 509 1.673033 CGTGGTAGTTCCTCCTTGCAG 60.673 57.143 0.00 0.00 37.07 4.41
504 529 2.866762 GGGTGTGAATCTTGCGATAGAC 59.133 50.000 0.00 0.00 39.76 2.59
511 536 0.890683 CCCAAGGGTGTGAATCTTGC 59.109 55.000 0.00 0.00 37.24 4.01
547 572 0.671781 AGGTGCTGATTCGTGCAGAC 60.672 55.000 4.70 2.52 40.06 3.51
554 579 2.093973 ACAGGAAGTAGGTGCTGATTCG 60.094 50.000 0.44 0.00 39.16 3.34
577 602 5.728637 ATTTGTCAAGTCTGGGGAATTTC 57.271 39.130 0.00 0.00 0.00 2.17
590 615 7.113965 GTGATACAAGAGCAACAATTTGTCAAG 59.886 37.037 1.83 0.00 35.55 3.02
602 627 4.154015 CGTTTGGATGTGATACAAGAGCAA 59.846 41.667 0.00 0.00 33.93 3.91
603 628 3.684305 CGTTTGGATGTGATACAAGAGCA 59.316 43.478 0.00 0.00 33.93 4.26
604 629 3.063997 CCGTTTGGATGTGATACAAGAGC 59.936 47.826 0.00 0.00 33.93 4.09
605 630 4.503910 TCCGTTTGGATGTGATACAAGAG 58.496 43.478 0.00 0.00 40.17 2.85
606 631 4.545208 TCCGTTTGGATGTGATACAAGA 57.455 40.909 0.00 0.00 40.17 3.02
619 644 0.729140 GCTGTTTCGCATCCGTTTGG 60.729 55.000 0.00 0.00 35.54 3.28
620 645 0.040514 TGCTGTTTCGCATCCGTTTG 60.041 50.000 0.00 0.00 34.44 2.93
621 646 0.665835 TTGCTGTTTCGCATCCGTTT 59.334 45.000 0.00 0.00 40.04 3.60
622 647 0.238289 CTTGCTGTTTCGCATCCGTT 59.762 50.000 0.00 0.00 40.04 4.44
623 648 0.602638 TCTTGCTGTTTCGCATCCGT 60.603 50.000 0.00 0.00 40.04 4.69
624 649 0.516877 TTCTTGCTGTTTCGCATCCG 59.483 50.000 0.00 0.00 40.04 4.18
625 650 2.287547 TGTTTCTTGCTGTTTCGCATCC 60.288 45.455 0.00 0.00 40.04 3.51
626 651 2.975851 CTGTTTCTTGCTGTTTCGCATC 59.024 45.455 0.00 0.00 40.04 3.91
627 652 2.618241 TCTGTTTCTTGCTGTTTCGCAT 59.382 40.909 0.00 0.00 40.04 4.73
628 653 2.013400 TCTGTTTCTTGCTGTTTCGCA 58.987 42.857 0.00 0.00 38.31 5.10
629 654 2.223249 TGTCTGTTTCTTGCTGTTTCGC 60.223 45.455 0.00 0.00 0.00 4.70
630 655 3.673746 TGTCTGTTTCTTGCTGTTTCG 57.326 42.857 0.00 0.00 0.00 3.46
631 656 4.096382 TCCTTGTCTGTTTCTTGCTGTTTC 59.904 41.667 0.00 0.00 0.00 2.78
632 657 4.016444 TCCTTGTCTGTTTCTTGCTGTTT 58.984 39.130 0.00 0.00 0.00 2.83
633 658 3.620488 TCCTTGTCTGTTTCTTGCTGTT 58.380 40.909 0.00 0.00 0.00 3.16
634 659 3.118261 TCTCCTTGTCTGTTTCTTGCTGT 60.118 43.478 0.00 0.00 0.00 4.40
635 660 3.470709 TCTCCTTGTCTGTTTCTTGCTG 58.529 45.455 0.00 0.00 0.00 4.41
636 661 3.389329 TCTCTCCTTGTCTGTTTCTTGCT 59.611 43.478 0.00 0.00 0.00 3.91
637 662 3.733337 TCTCTCCTTGTCTGTTTCTTGC 58.267 45.455 0.00 0.00 0.00 4.01
638 663 4.039730 TCCTCTCTCCTTGTCTGTTTCTTG 59.960 45.833 0.00 0.00 0.00 3.02
639 664 4.227197 TCCTCTCTCCTTGTCTGTTTCTT 58.773 43.478 0.00 0.00 0.00 2.52
640 665 3.850752 TCCTCTCTCCTTGTCTGTTTCT 58.149 45.455 0.00 0.00 0.00 2.52
838 864 1.070309 CGAATTATTCTGAGGCTGCGC 60.070 52.381 0.00 0.00 0.00 6.09
848 874 1.202818 GGCTGGGCCTCGAATTATTCT 60.203 52.381 4.53 0.00 46.69 2.40
872 898 1.152589 TGGCCCATGTTGCAGTTGA 60.153 52.632 0.00 0.00 0.00 3.18
920 946 4.379813 CCACCTCTGGAATGTTTCGAATTG 60.380 45.833 0.00 0.00 40.55 2.32
923 949 2.105821 ACCACCTCTGGAATGTTTCGAA 59.894 45.455 0.00 0.00 40.55 3.71
934 960 1.764571 TTTCGACCCACCACCTCTGG 61.765 60.000 0.00 0.00 44.26 3.86
949 976 1.673337 GGGGGTTCGGGAGTTTTCG 60.673 63.158 0.00 0.00 0.00 3.46
950 977 0.986527 TAGGGGGTTCGGGAGTTTTC 59.013 55.000 0.00 0.00 0.00 2.29
1158 1191 2.528743 GCGTCATCCACCAGCATCG 61.529 63.158 0.00 0.00 0.00 3.84
1162 1195 3.490759 CACGCGTCATCCACCAGC 61.491 66.667 9.86 0.00 0.00 4.85
1163 1196 3.490759 GCACGCGTCATCCACCAG 61.491 66.667 9.86 0.00 0.00 4.00
1164 1197 4.002506 AGCACGCGTCATCCACCA 62.003 61.111 9.86 0.00 0.00 4.17
1165 1198 3.490759 CAGCACGCGTCATCCACC 61.491 66.667 9.86 0.00 0.00 4.61
1166 1199 3.490759 CCAGCACGCGTCATCCAC 61.491 66.667 9.86 0.00 0.00 4.02
1167 1200 2.520465 AATCCAGCACGCGTCATCCA 62.520 55.000 9.86 0.00 0.00 3.41
1168 1201 1.369091 AAATCCAGCACGCGTCATCC 61.369 55.000 9.86 0.00 0.00 3.51
1169 1202 0.247814 CAAATCCAGCACGCGTCATC 60.248 55.000 9.86 0.85 0.00 2.92
1170 1203 0.673333 TCAAATCCAGCACGCGTCAT 60.673 50.000 9.86 0.00 0.00 3.06
1171 1204 0.673333 ATCAAATCCAGCACGCGTCA 60.673 50.000 9.86 0.00 0.00 4.35
1172 1205 0.447801 AATCAAATCCAGCACGCGTC 59.552 50.000 9.86 4.43 0.00 5.19
1173 1206 0.881118 AAATCAAATCCAGCACGCGT 59.119 45.000 5.58 5.58 0.00 6.01
1174 1207 1.135717 TCAAATCAAATCCAGCACGCG 60.136 47.619 3.53 3.53 0.00 6.01
1201 1246 2.041485 TCCTGATCAAGCCAAATCCACA 59.959 45.455 0.00 0.00 0.00 4.17
1316 1361 5.463061 AGCTGAAAACAATTGAAATGGAACG 59.537 36.000 13.59 0.00 0.00 3.95
1357 1402 8.019669 CGGATATATTTTGAAGAAGGCAATCTG 58.980 37.037 0.00 0.00 0.00 2.90
1394 1439 5.902613 TGGTCAATCTCATTCCACAAATC 57.097 39.130 0.00 0.00 0.00 2.17
1419 1464 5.982516 TCAAACATTGAGCTTAAAACGCAAT 59.017 32.000 0.00 2.51 37.93 3.56
1532 1577 7.490000 AGTAATTAAACCTCCAGATACTGACG 58.510 38.462 0.00 0.00 32.44 4.35
1700 1745 5.929992 TCGTCTGGTTTAATCCTACAAACAG 59.070 40.000 4.25 0.00 36.56 3.16
1896 1941 4.164221 TCAGATTCCTAGCAACTAAAGGGG 59.836 45.833 0.00 0.00 0.00 4.79
1937 1983 7.867909 TCCTCAGAAATTATTCATAGCAGTACG 59.132 37.037 0.00 0.00 38.06 3.67
2128 3268 7.459234 ACCACTTTTACACCTAGCTAATTTCT 58.541 34.615 0.00 0.00 0.00 2.52
2303 3443 9.771534 CAGAAGTTTAAAATAATGGTTCCCAAA 57.228 29.630 0.00 0.00 36.95 3.28
2323 3463 1.276421 ACAGCCTTACGCATCAGAAGT 59.724 47.619 0.00 0.00 41.38 3.01
2381 3521 5.817816 ACAAGGCTAAGTCATACTATGCAAC 59.182 40.000 0.00 0.00 31.27 4.17
2382 3522 5.989477 ACAAGGCTAAGTCATACTATGCAA 58.011 37.500 0.00 0.00 31.27 4.08
2469 3610 3.118956 TGGTTTGTTGCCCTGTAAACAAG 60.119 43.478 0.00 0.00 44.57 3.16
2512 3655 2.859992 GAGCATCCTGGTGTGGTTC 58.140 57.895 7.68 0.50 0.00 3.62
2535 3678 3.561725 GGTGTGATGATTAGGCTTGCTAC 59.438 47.826 0.00 0.00 0.00 3.58
2609 3752 2.706190 AGTGTGACACTAGGCCTTTTCT 59.294 45.455 17.91 0.00 43.46 2.52
2614 3757 1.077334 AGGTAGTGTGACACTAGGCCT 59.923 52.381 24.49 23.23 45.88 5.19
2652 3795 6.727215 TGTTAATTTGGTTGTCGTCCTTTAC 58.273 36.000 0.00 0.00 0.00 2.01
2723 3866 1.493950 CGCCGCATGTGAGAAGGATC 61.494 60.000 8.11 0.00 0.00 3.36
2756 3899 2.490115 GACTCGTGATGTCTTCAGAGGT 59.510 50.000 14.20 4.69 35.58 3.85
2789 3932 0.817654 TGCATCAGGTGTCTAGACGG 59.182 55.000 17.85 7.70 0.00 4.79
2807 3950 2.795329 AGAGGGGTACAAAACATGCTG 58.205 47.619 0.00 0.00 0.00 4.41
2846 3989 5.768164 TCTTGTTTGTTCCCTAATTGACTCC 59.232 40.000 0.00 0.00 0.00 3.85
2880 4023 2.301296 CCATGCCTACAGATCCTACTGG 59.699 54.545 0.00 0.00 41.59 4.00
2901 4044 6.036246 GAACAAATCCAGTTTTCAAAGTGC 57.964 37.500 2.04 0.00 37.88 4.40
3120 4263 9.606631 ATTGAATCTAAGAACAAGATCAGTACC 57.393 33.333 0.00 0.00 32.48 3.34
3131 4274 9.342308 CCCAGCTTTATATTGAATCTAAGAACA 57.658 33.333 0.00 0.00 0.00 3.18
3132 4275 9.561069 TCCCAGCTTTATATTGAATCTAAGAAC 57.439 33.333 0.00 0.00 0.00 3.01
3133 4276 9.784531 CTCCCAGCTTTATATTGAATCTAAGAA 57.215 33.333 0.00 0.00 0.00 2.52
3134 4277 9.159254 TCTCCCAGCTTTATATTGAATCTAAGA 57.841 33.333 0.00 0.00 0.00 2.10
3191 4334 5.871524 TCATGACAGTAGAGCAAAGTGATTC 59.128 40.000 0.00 0.00 0.00 2.52
3339 4483 7.035612 GTCCCCAATCACTATTTTTGACAATC 58.964 38.462 0.00 0.00 0.00 2.67
3419 4564 8.506168 TGAAATTTTCTTCAGAACTACACACT 57.494 30.769 10.33 0.00 33.13 3.55
3465 4676 6.873605 TCTGATCAAATACACAAGTTCGACAT 59.126 34.615 0.00 0.00 0.00 3.06
3469 4680 7.063898 AGTCATCTGATCAAATACACAAGTTCG 59.936 37.037 0.00 0.00 0.00 3.95
3658 4877 8.864087 AGAGTCATTGCTCAAGACATATATACA 58.136 33.333 9.67 0.00 37.94 2.29
3968 5187 3.263489 TTGAACCACAACACGGAAGTA 57.737 42.857 0.00 0.00 36.56 2.24
4074 5294 6.811253 ACGCTAATTTGGTTCAGAAATACA 57.189 33.333 0.00 0.00 0.00 2.29
4267 5487 4.338400 TCAGCATAGACGCTATGTTGTACT 59.662 41.667 26.42 14.87 41.38 2.73
4287 5647 7.912949 TTGTGTTTCGAATTGAGATTTTCAG 57.087 32.000 0.00 0.00 37.07 3.02
4328 5689 4.142049 CCAAACAAATATGGGCCGTTATGT 60.142 41.667 2.17 4.19 32.87 2.29
4334 5717 0.534412 TGCCAAACAAATATGGGCCG 59.466 50.000 0.00 0.00 43.96 6.13
4387 5770 1.920325 CACTGCCCTCCCCTCTTCA 60.920 63.158 0.00 0.00 0.00 3.02
4446 5829 1.146041 ACAAACCGCTCTGCTGACA 59.854 52.632 0.00 0.00 0.00 3.58
4456 5839 1.305201 TCAAGGAGAACACAAACCGC 58.695 50.000 0.00 0.00 0.00 5.68
4507 5890 3.110178 GGTTTCGACGCCGAGGTG 61.110 66.667 0.00 0.46 46.39 4.00
4608 5991 1.370609 TGTTTTCGCGGTCACAAGAA 58.629 45.000 6.13 0.00 0.00 2.52
4752 6135 1.904144 TGTTCGTCGGTTCATCGATC 58.096 50.000 0.00 0.00 41.40 3.69
4794 6177 2.381911 TGGGAGATACCGGACAAGTAC 58.618 52.381 9.46 0.00 40.11 2.73
4817 6203 4.020573 TGTGTGAATCGAACCTTCCATAGT 60.021 41.667 0.00 0.00 0.00 2.12
4840 6226 3.119637 GCGCCACCACAATTTACTGTATT 60.120 43.478 0.00 0.00 0.00 1.89
4867 6254 1.202087 TGATTTACCGGCGCAAAATCG 60.202 47.619 25.95 12.20 40.76 3.34
4886 6273 3.568538 CACGCCAATTTTTCTCCTTCTG 58.431 45.455 0.00 0.00 0.00 3.02
4889 6279 1.335872 CGCACGCCAATTTTTCTCCTT 60.336 47.619 0.00 0.00 0.00 3.36
4903 6293 4.077188 GCCTGAGAACACGCACGC 62.077 66.667 0.00 0.00 0.00 5.34
4990 6382 0.550914 ATCTCAGCCTCTCGAGTCCT 59.449 55.000 13.13 4.45 0.00 3.85
5080 6473 0.038166 TTTCCTGCCTCCATCACCAC 59.962 55.000 0.00 0.00 0.00 4.16
5081 6474 0.329261 CTTTCCTGCCTCCATCACCA 59.671 55.000 0.00 0.00 0.00 4.17
5082 6475 0.394899 CCTTTCCTGCCTCCATCACC 60.395 60.000 0.00 0.00 0.00 4.02
5095 6488 3.696548 GACAAACATCCATCTCCCTTTCC 59.303 47.826 0.00 0.00 0.00 3.13
5111 6504 3.363673 GGACGGAGAAAACGATGACAAAC 60.364 47.826 0.00 0.00 34.93 2.93
5218 6611 5.351948 TTTCCTCCAAAAGAAAACAAGGG 57.648 39.130 0.00 0.00 0.00 3.95
5237 6630 0.519077 CTGGCTGGAGCGAGTTTTTC 59.481 55.000 2.68 0.00 41.18 2.29
5238 6631 2.633860 CTGGCTGGAGCGAGTTTTT 58.366 52.632 2.68 0.00 41.18 1.94
5306 6699 3.647771 GGGCGGTTGGGGACTTCT 61.648 66.667 0.00 0.00 0.00 2.85
5398 6791 3.138625 CGTACTGATCGGGCCCAT 58.861 61.111 24.92 14.73 0.00 4.00
5406 6799 0.952280 TCCTCCGATGCGTACTGATC 59.048 55.000 0.00 0.00 0.00 2.92
5410 6803 1.310933 AACGTCCTCCGATGCGTACT 61.311 55.000 0.00 0.00 40.70 2.73
5428 6821 2.751688 GAACCCAGCCCGTACCAA 59.248 61.111 0.00 0.00 0.00 3.67
5438 6831 2.202932 CCGCAGATCCGAACCCAG 60.203 66.667 0.00 0.00 0.00 4.45
5446 6839 2.592861 GGCATGGTCCGCAGATCC 60.593 66.667 0.00 0.00 0.00 3.36
5450 6843 2.329539 ATAGGTGGCATGGTCCGCAG 62.330 60.000 5.44 0.00 38.34 5.18
5451 6844 2.374525 ATAGGTGGCATGGTCCGCA 61.375 57.895 5.44 0.00 38.34 5.69
5452 6845 1.893808 CATAGGTGGCATGGTCCGC 60.894 63.158 0.00 0.00 35.93 5.54
5453 6846 1.227943 CCATAGGTGGCATGGTCCG 60.228 63.158 0.00 0.00 39.01 4.79
5454 6847 1.151450 CCCATAGGTGGCATGGTCC 59.849 63.158 4.29 0.00 44.62 4.46
5455 6848 0.109342 CTCCCATAGGTGGCATGGTC 59.891 60.000 4.29 0.00 44.62 4.02
5456 6849 1.355718 CCTCCCATAGGTGGCATGGT 61.356 60.000 4.29 0.00 44.62 3.55
5457 6850 1.061905 TCCTCCCATAGGTGGCATGG 61.062 60.000 0.00 0.00 46.62 3.66
5458 6851 0.109342 GTCCTCCCATAGGTGGCATG 59.891 60.000 0.00 0.00 46.62 4.06
5459 6852 1.410850 CGTCCTCCCATAGGTGGCAT 61.411 60.000 0.00 0.00 46.62 4.40
5460 6853 2.063979 CGTCCTCCCATAGGTGGCA 61.064 63.158 0.00 0.00 46.62 4.92
5461 6854 2.822399 CGTCCTCCCATAGGTGGC 59.178 66.667 0.00 0.00 46.62 5.01
5462 6855 1.410850 ATGCGTCCTCCCATAGGTGG 61.411 60.000 0.00 0.00 46.62 4.61
5463 6856 1.338107 TATGCGTCCTCCCATAGGTG 58.662 55.000 0.00 0.00 46.62 4.00
5464 6857 2.327325 ATATGCGTCCTCCCATAGGT 57.673 50.000 0.00 0.00 46.62 3.08
5466 6859 4.948004 TGTAGTATATGCGTCCTCCCATAG 59.052 45.833 0.00 0.00 0.00 2.23
5467 6860 4.925836 TGTAGTATATGCGTCCTCCCATA 58.074 43.478 0.00 0.00 0.00 2.74
5468 6861 3.774734 TGTAGTATATGCGTCCTCCCAT 58.225 45.455 0.00 0.00 0.00 4.00
5469 6862 3.232720 TGTAGTATATGCGTCCTCCCA 57.767 47.619 0.00 0.00 0.00 4.37
5470 6863 4.803098 ATTGTAGTATATGCGTCCTCCC 57.197 45.455 0.00 0.00 0.00 4.30
5471 6864 5.539048 ACAATTGTAGTATATGCGTCCTCC 58.461 41.667 9.97 0.00 0.00 4.30
5472 6865 8.758633 ATTACAATTGTAGTATATGCGTCCTC 57.241 34.615 17.36 0.00 0.00 3.71
5491 6884 8.936864 CCCCGCAAAATACAAAAATAATTACAA 58.063 29.630 0.00 0.00 0.00 2.41
5492 6885 8.311836 TCCCCGCAAAATACAAAAATAATTACA 58.688 29.630 0.00 0.00 0.00 2.41
5493 6886 8.597227 GTCCCCGCAAAATACAAAAATAATTAC 58.403 33.333 0.00 0.00 0.00 1.89
5494 6887 8.311836 TGTCCCCGCAAAATACAAAAATAATTA 58.688 29.630 0.00 0.00 0.00 1.40
5495 6888 7.118535 GTGTCCCCGCAAAATACAAAAATAATT 59.881 33.333 0.00 0.00 0.00 1.40
5496 6889 6.592220 GTGTCCCCGCAAAATACAAAAATAAT 59.408 34.615 0.00 0.00 0.00 1.28
5497 6890 5.927115 GTGTCCCCGCAAAATACAAAAATAA 59.073 36.000 0.00 0.00 0.00 1.40
5498 6891 5.471257 GTGTCCCCGCAAAATACAAAAATA 58.529 37.500 0.00 0.00 0.00 1.40
5499 6892 4.311606 GTGTCCCCGCAAAATACAAAAAT 58.688 39.130 0.00 0.00 0.00 1.82
5500 6893 3.718815 GTGTCCCCGCAAAATACAAAAA 58.281 40.909 0.00 0.00 0.00 1.94
5501 6894 2.287668 CGTGTCCCCGCAAAATACAAAA 60.288 45.455 0.00 0.00 0.00 2.44
5502 6895 1.267261 CGTGTCCCCGCAAAATACAAA 59.733 47.619 0.00 0.00 0.00 2.83
5503 6896 0.875728 CGTGTCCCCGCAAAATACAA 59.124 50.000 0.00 0.00 0.00 2.41
5504 6897 2.545875 CGTGTCCCCGCAAAATACA 58.454 52.632 0.00 0.00 0.00 2.29
5514 6907 4.947147 TTGCACCTGCGTGTCCCC 62.947 66.667 0.00 0.00 45.83 4.81
5515 6908 2.200170 GAATTGCACCTGCGTGTCCC 62.200 60.000 0.00 0.00 45.83 4.46
5516 6909 1.210155 GAATTGCACCTGCGTGTCC 59.790 57.895 0.00 0.00 45.83 4.02
5517 6910 0.310543 TTGAATTGCACCTGCGTGTC 59.689 50.000 0.00 0.00 45.83 3.67
5518 6911 0.030638 GTTGAATTGCACCTGCGTGT 59.969 50.000 0.00 0.00 45.83 4.49
5519 6912 0.030504 TGTTGAATTGCACCTGCGTG 59.969 50.000 0.00 0.00 45.83 5.34
5520 6913 0.961019 ATGTTGAATTGCACCTGCGT 59.039 45.000 0.00 0.00 45.83 5.24
5521 6914 1.336148 ACATGTTGAATTGCACCTGCG 60.336 47.619 0.00 0.00 45.83 5.18
5522 6915 2.063266 CACATGTTGAATTGCACCTGC 58.937 47.619 0.00 0.00 42.50 4.85
5523 6916 2.036217 ACCACATGTTGAATTGCACCTG 59.964 45.455 3.55 0.00 0.00 4.00
5524 6917 2.318908 ACCACATGTTGAATTGCACCT 58.681 42.857 3.55 0.00 0.00 4.00
5525 6918 2.818130 ACCACATGTTGAATTGCACC 57.182 45.000 3.55 0.00 0.00 5.01
5535 6928 5.241403 TCTAACCATCTCAACCACATGTT 57.759 39.130 0.00 0.00 37.80 2.71
5536 6929 4.908601 TCTAACCATCTCAACCACATGT 57.091 40.909 0.00 0.00 0.00 3.21
5537 6930 4.577693 CCATCTAACCATCTCAACCACATG 59.422 45.833 0.00 0.00 0.00 3.21
5538 6931 4.474651 TCCATCTAACCATCTCAACCACAT 59.525 41.667 0.00 0.00 0.00 3.21
5539 6932 3.843619 TCCATCTAACCATCTCAACCACA 59.156 43.478 0.00 0.00 0.00 4.17
5540 6933 4.192317 GTCCATCTAACCATCTCAACCAC 58.808 47.826 0.00 0.00 0.00 4.16
5541 6934 3.843619 TGTCCATCTAACCATCTCAACCA 59.156 43.478 0.00 0.00 0.00 3.67
5542 6935 4.080863 ACTGTCCATCTAACCATCTCAACC 60.081 45.833 0.00 0.00 0.00 3.77
5543 6936 4.872691 CACTGTCCATCTAACCATCTCAAC 59.127 45.833 0.00 0.00 0.00 3.18
5544 6937 4.080919 CCACTGTCCATCTAACCATCTCAA 60.081 45.833 0.00 0.00 0.00 3.02
5545 6938 3.452264 CCACTGTCCATCTAACCATCTCA 59.548 47.826 0.00 0.00 0.00 3.27
5546 6939 3.452627 ACCACTGTCCATCTAACCATCTC 59.547 47.826 0.00 0.00 0.00 2.75
5547 6940 3.454858 ACCACTGTCCATCTAACCATCT 58.545 45.455 0.00 0.00 0.00 2.90
5548 6941 3.914426 ACCACTGTCCATCTAACCATC 57.086 47.619 0.00 0.00 0.00 3.51
5549 6942 4.348168 GGATACCACTGTCCATCTAACCAT 59.652 45.833 0.00 0.00 34.57 3.55
5550 6943 3.709653 GGATACCACTGTCCATCTAACCA 59.290 47.826 0.00 0.00 34.57 3.67
5551 6944 4.338379 GGATACCACTGTCCATCTAACC 57.662 50.000 0.00 0.00 34.57 2.85
5567 6960 5.296151 TGAATCCTGATGAACTGGGATAC 57.704 43.478 0.00 0.00 37.57 2.24
5568 6961 5.974156 TTGAATCCTGATGAACTGGGATA 57.026 39.130 0.00 0.00 37.57 2.59
5569 6962 4.868172 TTGAATCCTGATGAACTGGGAT 57.132 40.909 0.00 0.00 39.91 3.85
5570 6963 4.656100 TTTGAATCCTGATGAACTGGGA 57.344 40.909 0.00 0.00 38.03 4.37
5571 6964 5.511234 GATTTGAATCCTGATGAACTGGG 57.489 43.478 0.00 0.00 38.03 4.45
5584 6977 1.064654 GCGAGCACCAGGATTTGAATC 59.935 52.381 0.00 0.00 34.66 2.52
5585 6978 1.098050 GCGAGCACCAGGATTTGAAT 58.902 50.000 0.00 0.00 0.00 2.57
5586 6979 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
5587 6980 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
5588 6981 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
5589 6982 1.549203 AAATGCGAGCACCAGGATTT 58.451 45.000 0.00 0.00 34.37 2.17
5590 6983 2.418368 TAAATGCGAGCACCAGGATT 57.582 45.000 0.00 0.00 0.00 3.01
5591 6984 2.105477 AGATAAATGCGAGCACCAGGAT 59.895 45.455 0.00 0.00 0.00 3.24
5592 6985 1.486310 AGATAAATGCGAGCACCAGGA 59.514 47.619 0.00 0.00 0.00 3.86
5593 6986 1.959042 AGATAAATGCGAGCACCAGG 58.041 50.000 0.00 0.00 0.00 4.45
5594 6987 2.679837 ACAAGATAAATGCGAGCACCAG 59.320 45.455 0.00 0.00 0.00 4.00
5595 6988 2.710377 ACAAGATAAATGCGAGCACCA 58.290 42.857 0.00 0.00 0.00 4.17
5596 6989 5.424121 AATACAAGATAAATGCGAGCACC 57.576 39.130 0.00 0.00 0.00 5.01
5597 6990 9.450807 AAATAAATACAAGATAAATGCGAGCAC 57.549 29.630 0.00 0.00 0.00 4.40
5598 6991 9.663904 GAAATAAATACAAGATAAATGCGAGCA 57.336 29.630 0.00 0.00 0.00 4.26
5599 6992 9.663904 TGAAATAAATACAAGATAAATGCGAGC 57.336 29.630 0.00 0.00 0.00 5.03
5611 7004 7.165812 CGCCGGAAATCTTGAAATAAATACAAG 59.834 37.037 5.05 0.00 41.27 3.16
5612 7005 6.970043 CGCCGGAAATCTTGAAATAAATACAA 59.030 34.615 5.05 0.00 0.00 2.41
5613 7006 6.316640 TCGCCGGAAATCTTGAAATAAATACA 59.683 34.615 5.05 0.00 0.00 2.29
5614 7007 6.721321 TCGCCGGAAATCTTGAAATAAATAC 58.279 36.000 5.05 0.00 0.00 1.89
5615 7008 6.928979 TCGCCGGAAATCTTGAAATAAATA 57.071 33.333 5.05 0.00 0.00 1.40
5616 7009 5.828299 TCGCCGGAAATCTTGAAATAAAT 57.172 34.783 5.05 0.00 0.00 1.40
5617 7010 5.828299 ATCGCCGGAAATCTTGAAATAAA 57.172 34.783 5.05 0.00 0.00 1.40
5618 7011 5.818336 TGTATCGCCGGAAATCTTGAAATAA 59.182 36.000 5.05 0.00 0.00 1.40
5619 7012 5.361427 TGTATCGCCGGAAATCTTGAAATA 58.639 37.500 5.05 0.00 0.00 1.40
5620 7013 4.196193 TGTATCGCCGGAAATCTTGAAAT 58.804 39.130 5.05 0.00 0.00 2.17
5621 7014 3.601435 TGTATCGCCGGAAATCTTGAAA 58.399 40.909 5.05 0.00 0.00 2.69
5622 7015 3.254470 TGTATCGCCGGAAATCTTGAA 57.746 42.857 5.05 0.00 0.00 2.69
5623 7016 2.971660 TGTATCGCCGGAAATCTTGA 57.028 45.000 5.05 0.00 0.00 3.02
5624 7017 4.552166 AAATGTATCGCCGGAAATCTTG 57.448 40.909 5.05 0.00 0.00 3.02
5625 7018 4.638421 TGAAAATGTATCGCCGGAAATCTT 59.362 37.500 5.05 0.00 0.00 2.40
5626 7019 4.196193 TGAAAATGTATCGCCGGAAATCT 58.804 39.130 5.05 0.00 0.00 2.40
5627 7020 4.527564 CTGAAAATGTATCGCCGGAAATC 58.472 43.478 5.05 0.00 0.00 2.17
5628 7021 3.315191 CCTGAAAATGTATCGCCGGAAAT 59.685 43.478 5.05 0.00 0.00 2.17
5629 7022 2.680841 CCTGAAAATGTATCGCCGGAAA 59.319 45.455 5.05 0.00 0.00 3.13
5630 7023 2.285083 CCTGAAAATGTATCGCCGGAA 58.715 47.619 5.05 0.00 0.00 4.30
5631 7024 1.474320 CCCTGAAAATGTATCGCCGGA 60.474 52.381 5.05 0.00 0.00 5.14
5632 7025 0.944386 CCCTGAAAATGTATCGCCGG 59.056 55.000 0.00 0.00 0.00 6.13
5633 7026 0.944386 CCCCTGAAAATGTATCGCCG 59.056 55.000 0.00 0.00 0.00 6.46
5634 7027 1.133915 TCCCCCTGAAAATGTATCGCC 60.134 52.381 0.00 0.00 0.00 5.54
5635 7028 2.222027 CTCCCCCTGAAAATGTATCGC 58.778 52.381 0.00 0.00 0.00 4.58
5636 7029 2.438021 TCCTCCCCCTGAAAATGTATCG 59.562 50.000 0.00 0.00 0.00 2.92
5637 7030 3.716872 TCTCCTCCCCCTGAAAATGTATC 59.283 47.826 0.00 0.00 0.00 2.24
5638 7031 3.459969 GTCTCCTCCCCCTGAAAATGTAT 59.540 47.826 0.00 0.00 0.00 2.29
5639 7032 2.844348 GTCTCCTCCCCCTGAAAATGTA 59.156 50.000 0.00 0.00 0.00 2.29
5640 7033 1.636003 GTCTCCTCCCCCTGAAAATGT 59.364 52.381 0.00 0.00 0.00 2.71
5641 7034 1.407437 CGTCTCCTCCCCCTGAAAATG 60.407 57.143 0.00 0.00 0.00 2.32
5642 7035 0.912486 CGTCTCCTCCCCCTGAAAAT 59.088 55.000 0.00 0.00 0.00 1.82
5643 7036 0.473117 ACGTCTCCTCCCCCTGAAAA 60.473 55.000 0.00 0.00 0.00 2.29
5644 7037 0.410663 TACGTCTCCTCCCCCTGAAA 59.589 55.000 0.00 0.00 0.00 2.69
5645 7038 0.635009 ATACGTCTCCTCCCCCTGAA 59.365 55.000 0.00 0.00 0.00 3.02
5646 7039 0.185416 GATACGTCTCCTCCCCCTGA 59.815 60.000 0.00 0.00 0.00 3.86
5647 7040 1.173444 CGATACGTCTCCTCCCCCTG 61.173 65.000 0.00 0.00 0.00 4.45
5648 7041 1.150992 CGATACGTCTCCTCCCCCT 59.849 63.158 0.00 0.00 0.00 4.79
5649 7042 1.150081 TCGATACGTCTCCTCCCCC 59.850 63.158 0.00 0.00 0.00 5.40
5650 7043 1.505477 CGTCGATACGTCTCCTCCCC 61.505 65.000 0.00 0.00 44.21 4.81
5651 7044 1.940334 CGTCGATACGTCTCCTCCC 59.060 63.158 0.00 0.00 44.21 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.