Multiple sequence alignment - TraesCS1A01G212700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G212700 chr1A 100.000 8147 0 0 1 8147 375478394 375470248 0.000000e+00 15045.0
1 TraesCS1A01G212700 chr1A 89.474 152 5 3 5505 5645 375472750 375472599 1.810000e-41 182.0
2 TraesCS1A01G212700 chr1A 89.474 152 5 3 5645 5796 375472890 375472750 1.810000e-41 182.0
3 TraesCS1A01G212700 chr1D 93.067 3981 181 33 4211 8147 300865066 300861137 0.000000e+00 5734.0
4 TraesCS1A01G212700 chr1D 92.443 2607 96 37 157 2695 300871726 300869153 0.000000e+00 3629.0
5 TraesCS1A01G212700 chr1D 90.656 1327 97 6 2715 4028 300869105 300867793 0.000000e+00 1738.0
6 TraesCS1A01G212700 chr1D 94.340 159 7 2 5645 5801 300863770 300863612 8.170000e-60 243.0
7 TraesCS1A01G212700 chr1D 91.304 161 13 1 1 160 300945729 300945569 1.380000e-52 219.0
8 TraesCS1A01G212700 chr1D 89.933 149 4 3 5505 5642 300863619 300863471 1.810000e-41 182.0
9 TraesCS1A01G212700 chr1D 94.737 114 5 1 4084 4197 300867792 300867680 8.400000e-40 176.0
10 TraesCS1A01G212700 chr1B 91.588 2223 92 27 419 2587 406050792 406048611 0.000000e+00 2981.0
11 TraesCS1A01G212700 chr1B 92.174 1610 59 17 1146 2695 406050066 406048464 0.000000e+00 2213.0
12 TraesCS1A01G212700 chr1B 93.698 1333 71 7 5646 6976 406041308 406039987 0.000000e+00 1984.0
13 TraesCS1A01G212700 chr1B 89.779 861 73 5 4798 5645 406042016 406041158 0.000000e+00 1088.0
14 TraesCS1A01G212700 chr1B 84.473 1024 136 16 2747 3754 406048257 406047241 0.000000e+00 989.0
15 TraesCS1A01G212700 chr1B 88.341 669 35 14 6962 7620 406039970 406039335 0.000000e+00 763.0
16 TraesCS1A01G212700 chr1B 89.044 502 51 4 4211 4710 406042515 406042016 3.230000e-173 619.0
17 TraesCS1A01G212700 chr1B 87.434 565 20 17 7618 8147 406039083 406038535 3.250000e-168 603.0
18 TraesCS1A01G212700 chr1B 83.893 447 68 3 3751 4197 406044999 406044557 2.720000e-114 424.0
19 TraesCS1A01G212700 chr6D 73.233 1457 313 55 4216 5637 88779406 88780820 7.450000e-125 459.0
20 TraesCS1A01G212700 chr2D 76.355 867 170 26 3036 3878 2581885 2581030 4.520000e-117 433.0
21 TraesCS1A01G212700 chr2D 75.663 867 176 26 3036 3878 2588616 2587761 4.580000e-107 399.0
22 TraesCS1A01G212700 chr2D 74.336 339 59 14 3197 3511 613231265 613230931 1.440000e-22 119.0
23 TraesCS1A01G212700 chr5D 76.943 759 143 22 2708 3457 300705658 300704923 3.540000e-108 403.0
24 TraesCS1A01G212700 chr5D 82.581 155 23 3 2708 2861 75931928 75931777 5.130000e-27 134.0
25 TraesCS1A01G212700 chr5D 83.505 97 15 1 2708 2803 432804355 432804259 1.130000e-13 89.8
26 TraesCS1A01G212700 chr2B 77.403 593 95 24 3010 3575 111674303 111674883 4.750000e-82 316.0
27 TraesCS1A01G212700 chr4D 76.781 379 80 7 2731 3108 481462733 481462362 1.070000e-48 206.0
28 TraesCS1A01G212700 chr4B 71.279 954 227 40 4726 5645 10831460 10830520 4.990000e-47 200.0
29 TraesCS1A01G212700 chr4B 84.615 156 19 4 2708 2861 508431402 508431554 5.090000e-32 150.0
30 TraesCS1A01G212700 chr3B 83.750 160 19 7 2708 2863 595364908 595364752 2.370000e-30 145.0
31 TraesCS1A01G212700 chr6A 82.278 158 22 6 2708 2863 51726050 51726203 1.840000e-26 132.0
32 TraesCS1A01G212700 chr4A 73.705 251 57 7 5675 5921 736750918 736751163 1.130000e-13 89.8
33 TraesCS1A01G212700 chr7B 96.875 32 1 0 5238 5269 621466543 621466512 4.000000e-03 54.7
34 TraesCS1A01G212700 chr2A 96.875 32 1 0 5238 5269 764245918 764245887 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G212700 chr1A 375470248 375478394 8146 True 15045.000000 15045 100.000000 1 8147 1 chr1A.!!$R1 8146
1 TraesCS1A01G212700 chr1D 300861137 300871726 10589 True 1950.333333 5734 92.529333 157 8147 6 chr1D.!!$R2 7990
2 TraesCS1A01G212700 chr1B 406038535 406050792 12257 True 1296.000000 2981 88.936000 419 8147 9 chr1B.!!$R1 7728
3 TraesCS1A01G212700 chr6D 88779406 88780820 1414 False 459.000000 459 73.233000 4216 5637 1 chr6D.!!$F1 1421
4 TraesCS1A01G212700 chr2D 2581030 2581885 855 True 433.000000 433 76.355000 3036 3878 1 chr2D.!!$R1 842
5 TraesCS1A01G212700 chr2D 2587761 2588616 855 True 399.000000 399 75.663000 3036 3878 1 chr2D.!!$R2 842
6 TraesCS1A01G212700 chr5D 300704923 300705658 735 True 403.000000 403 76.943000 2708 3457 1 chr5D.!!$R2 749
7 TraesCS1A01G212700 chr2B 111674303 111674883 580 False 316.000000 316 77.403000 3010 3575 1 chr2B.!!$F1 565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
203 204 0.102300 AAGTTTGACGCTTTGGTGCC 59.898 50.000 0.00 0.0 0.00 5.01 F
205 206 0.317854 GTTTGACGCTTTGGTGCCTC 60.318 55.000 0.00 0.0 0.00 4.70 F
210 211 0.533308 ACGCTTTGGTGCCTCGTAAA 60.533 50.000 0.00 0.0 0.00 2.01 F
306 307 1.203063 ACCAGTCTACTCAGGCACTCA 60.203 52.381 0.00 0.0 34.60 3.41 F
2208 2278 0.389948 AGAACGTCGTGATCAAGGGC 60.390 55.000 8.84 0.0 0.00 5.19 F
2705 2835 0.030235 GCTTGGTGTCGTTTTCCCAC 59.970 55.000 0.00 0.0 0.00 4.61 F
3646 3965 0.171455 CAGTCACCGTAGAGCACCTC 59.829 60.000 0.00 0.0 0.00 3.85 F
3689 4022 1.063867 AGGCTGTCCTATACGGTCACT 60.064 52.381 0.00 0.0 41.91 3.41 F
3920 6510 1.122019 AACAGGGCGTGAGAGTCCTT 61.122 55.000 14.98 0.0 0.00 3.36 F
5244 10476 1.134159 CCAGGCATCCAAGAAGAGGAG 60.134 57.143 0.00 0.0 38.83 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2134 2200 0.174617 TCAATAGACGCATGCACCGA 59.825 50.000 19.57 5.03 0.00 4.69 R
2169 2239 2.280797 GCTTCGTCACACAGCCCA 60.281 61.111 0.00 0.00 0.00 5.36 R
2208 2278 0.108615 ACGACCTCATTGGAGCTTCG 60.109 55.000 10.52 10.52 44.41 3.79 R
2405 2490 7.686434 AGTTGGTTGAAGCTAGACCTAATTAA 58.314 34.615 12.59 0.00 34.52 1.40 R
3123 3411 0.030773 GCGACGATGATAGGCACTCA 59.969 55.000 0.00 0.00 41.75 3.41 R
4168 6758 0.185901 ATTGGTGTGTGAGGCCAGTT 59.814 50.000 5.01 0.00 33.41 3.16 R
4910 10135 1.332997 GCCACTTGCATAGCTAGCTTG 59.667 52.381 24.88 20.22 40.77 4.01 R
5349 10581 1.452110 TCAATTCGGTGGCTGATGTG 58.548 50.000 0.00 0.00 0.00 3.21 R
6017 11262 1.145738 AGGACAAACATGGCACTTCCT 59.854 47.619 0.00 0.00 35.26 3.36 R
7248 12541 0.448990 TGCGCAATGATTGACTGAGC 59.551 50.000 8.16 6.26 36.55 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 9.752961 TTAGGTGGTAAAATTTTAACTTTCAGC 57.247 29.630 23.01 17.71 31.68 4.26
39 40 7.787028 AGGTGGTAAAATTTTAACTTTCAGCA 58.213 30.769 23.01 10.54 31.68 4.41
40 41 8.261522 AGGTGGTAAAATTTTAACTTTCAGCAA 58.738 29.630 23.01 1.66 31.68 3.91
41 42 8.884726 GGTGGTAAAATTTTAACTTTCAGCAAA 58.115 29.630 23.01 1.02 31.68 3.68
54 55 8.579682 AACTTTCAGCAAATCAACTAATGAAC 57.420 30.769 0.00 0.00 42.54 3.18
55 56 7.715657 ACTTTCAGCAAATCAACTAATGAACA 58.284 30.769 0.00 0.00 42.54 3.18
56 57 8.196771 ACTTTCAGCAAATCAACTAATGAACAA 58.803 29.630 0.00 0.00 42.54 2.83
57 58 8.578308 TTTCAGCAAATCAACTAATGAACAAG 57.422 30.769 0.00 0.00 42.54 3.16
58 59 6.151691 TCAGCAAATCAACTAATGAACAAGC 58.848 36.000 0.00 0.00 42.54 4.01
59 60 5.921976 CAGCAAATCAACTAATGAACAAGCA 59.078 36.000 0.00 0.00 42.54 3.91
60 61 6.588756 CAGCAAATCAACTAATGAACAAGCAT 59.411 34.615 0.00 0.00 42.54 3.79
61 62 6.588756 AGCAAATCAACTAATGAACAAGCATG 59.411 34.615 0.00 0.00 42.54 4.06
62 63 6.366877 GCAAATCAACTAATGAACAAGCATGT 59.633 34.615 0.00 0.00 42.54 3.21
63 64 7.411157 GCAAATCAACTAATGAACAAGCATGTC 60.411 37.037 0.00 0.00 42.54 3.06
64 65 5.627499 TCAACTAATGAACAAGCATGTCC 57.373 39.130 0.00 0.00 39.40 4.02
65 66 5.069318 TCAACTAATGAACAAGCATGTCCA 58.931 37.500 0.00 0.00 39.40 4.02
66 67 5.048782 TCAACTAATGAACAAGCATGTCCAC 60.049 40.000 0.00 0.00 39.40 4.02
67 68 4.397420 ACTAATGAACAAGCATGTCCACA 58.603 39.130 0.00 0.00 39.40 4.17
68 69 3.648339 AATGAACAAGCATGTCCACAC 57.352 42.857 0.00 0.00 39.40 3.82
69 70 2.346766 TGAACAAGCATGTCCACACT 57.653 45.000 0.00 0.00 39.40 3.55
70 71 2.653726 TGAACAAGCATGTCCACACTT 58.346 42.857 0.00 0.00 39.40 3.16
71 72 2.618241 TGAACAAGCATGTCCACACTTC 59.382 45.455 0.00 0.00 39.40 3.01
72 73 2.645838 ACAAGCATGTCCACACTTCT 57.354 45.000 0.00 0.00 33.41 2.85
73 74 3.769739 ACAAGCATGTCCACACTTCTA 57.230 42.857 0.00 0.00 33.41 2.10
74 75 3.668447 ACAAGCATGTCCACACTTCTAG 58.332 45.455 0.00 0.00 33.41 2.43
75 76 3.071602 ACAAGCATGTCCACACTTCTAGT 59.928 43.478 0.00 0.00 33.41 2.57
76 77 3.601443 AGCATGTCCACACTTCTAGTC 57.399 47.619 0.00 0.00 0.00 2.59
77 78 2.899900 AGCATGTCCACACTTCTAGTCA 59.100 45.455 0.00 0.00 0.00 3.41
78 79 3.517100 AGCATGTCCACACTTCTAGTCAT 59.483 43.478 0.00 0.00 0.00 3.06
79 80 4.711846 AGCATGTCCACACTTCTAGTCATA 59.288 41.667 0.00 0.00 0.00 2.15
80 81 5.046529 GCATGTCCACACTTCTAGTCATAG 58.953 45.833 0.00 0.00 0.00 2.23
81 82 4.720649 TGTCCACACTTCTAGTCATAGC 57.279 45.455 0.00 0.00 0.00 2.97
82 83 4.086457 TGTCCACACTTCTAGTCATAGCA 58.914 43.478 0.00 0.00 0.00 3.49
83 84 4.711846 TGTCCACACTTCTAGTCATAGCAT 59.288 41.667 0.00 0.00 0.00 3.79
84 85 5.163509 TGTCCACACTTCTAGTCATAGCATC 60.164 44.000 0.00 0.00 0.00 3.91
85 86 4.956075 TCCACACTTCTAGTCATAGCATCA 59.044 41.667 0.00 0.00 0.00 3.07
86 87 5.422012 TCCACACTTCTAGTCATAGCATCAA 59.578 40.000 0.00 0.00 0.00 2.57
87 88 6.070824 TCCACACTTCTAGTCATAGCATCAAA 60.071 38.462 0.00 0.00 0.00 2.69
88 89 6.257411 CCACACTTCTAGTCATAGCATCAAAG 59.743 42.308 0.00 0.00 0.00 2.77
89 90 7.038048 CACACTTCTAGTCATAGCATCAAAGA 58.962 38.462 0.00 0.00 0.00 2.52
90 91 7.710044 CACACTTCTAGTCATAGCATCAAAGAT 59.290 37.037 0.00 0.00 0.00 2.40
91 92 8.918116 ACACTTCTAGTCATAGCATCAAAGATA 58.082 33.333 0.00 0.00 0.00 1.98
92 93 9.190858 CACTTCTAGTCATAGCATCAAAGATAC 57.809 37.037 0.00 0.00 0.00 2.24
93 94 9.142014 ACTTCTAGTCATAGCATCAAAGATACT 57.858 33.333 0.00 0.00 0.00 2.12
97 98 9.853555 CTAGTCATAGCATCAAAGATACTAAGG 57.146 37.037 0.00 0.00 0.00 2.69
98 99 7.158021 AGTCATAGCATCAAAGATACTAAGGC 58.842 38.462 0.00 0.00 0.00 4.35
99 100 7.016072 AGTCATAGCATCAAAGATACTAAGGCT 59.984 37.037 0.00 0.00 0.00 4.58
100 101 7.117523 GTCATAGCATCAAAGATACTAAGGCTG 59.882 40.741 0.00 0.00 0.00 4.85
101 102 4.133078 AGCATCAAAGATACTAAGGCTGC 58.867 43.478 0.00 0.00 0.00 5.25
102 103 4.133078 GCATCAAAGATACTAAGGCTGCT 58.867 43.478 0.00 0.00 0.00 4.24
103 104 5.070981 AGCATCAAAGATACTAAGGCTGCTA 59.929 40.000 0.00 0.00 34.71 3.49
104 105 5.936956 GCATCAAAGATACTAAGGCTGCTAT 59.063 40.000 0.00 0.00 0.00 2.97
105 106 6.429385 GCATCAAAGATACTAAGGCTGCTATT 59.571 38.462 0.00 0.00 0.00 1.73
106 107 7.572724 GCATCAAAGATACTAAGGCTGCTATTG 60.573 40.741 0.00 0.00 0.00 1.90
107 108 5.760253 TCAAAGATACTAAGGCTGCTATTGC 59.240 40.000 0.00 0.00 40.20 3.56
108 109 5.559148 AAGATACTAAGGCTGCTATTGCT 57.441 39.130 0.00 0.00 40.48 3.91
109 110 4.892433 AGATACTAAGGCTGCTATTGCTG 58.108 43.478 0.00 0.89 40.48 4.41
121 122 6.674694 CTGCTATTGCTGCCCTATAATAAG 57.325 41.667 0.00 0.00 40.48 1.73
122 123 5.500234 TGCTATTGCTGCCCTATAATAAGG 58.500 41.667 0.00 0.00 40.48 2.69
123 124 6.093785 TGCTATTGCTGCCCTATAATAAGGC 61.094 44.000 0.00 0.00 41.18 4.35
124 125 8.224177 TGCTATTGCTGCCCTATAATAAGGCT 62.224 42.308 5.81 0.00 41.29 4.58
132 133 5.745227 GCCCTATAATAAGGCTGCTATTGA 58.255 41.667 0.00 0.00 43.62 2.57
133 134 6.180472 GCCCTATAATAAGGCTGCTATTGAA 58.820 40.000 0.00 0.00 43.62 2.69
134 135 6.317391 GCCCTATAATAAGGCTGCTATTGAAG 59.683 42.308 0.00 0.12 43.62 3.02
135 136 7.624549 CCCTATAATAAGGCTGCTATTGAAGA 58.375 38.462 0.00 0.00 35.09 2.87
136 137 8.270744 CCCTATAATAAGGCTGCTATTGAAGAT 58.729 37.037 0.00 0.00 35.09 2.40
137 138 9.107177 CCTATAATAAGGCTGCTATTGAAGATG 57.893 37.037 0.00 0.00 0.00 2.90
138 139 5.702349 AATAAGGCTGCTATTGAAGATGC 57.298 39.130 0.00 0.00 0.00 3.91
139 140 3.294038 AAGGCTGCTATTGAAGATGCT 57.706 42.857 0.00 0.00 0.00 3.79
140 141 2.848691 AGGCTGCTATTGAAGATGCTC 58.151 47.619 0.00 0.00 0.00 4.26
141 142 2.438763 AGGCTGCTATTGAAGATGCTCT 59.561 45.455 0.00 0.00 0.00 4.09
142 143 3.117963 AGGCTGCTATTGAAGATGCTCTT 60.118 43.478 0.00 0.00 39.87 2.85
143 144 4.102210 AGGCTGCTATTGAAGATGCTCTTA 59.898 41.667 0.00 0.00 36.73 2.10
144 145 4.451774 GGCTGCTATTGAAGATGCTCTTAG 59.548 45.833 0.00 0.00 36.73 2.18
145 146 4.451774 GCTGCTATTGAAGATGCTCTTAGG 59.548 45.833 0.00 0.00 36.73 2.69
146 147 5.741383 GCTGCTATTGAAGATGCTCTTAGGA 60.741 44.000 0.00 0.00 36.73 2.94
147 148 5.851720 TGCTATTGAAGATGCTCTTAGGAG 58.148 41.667 0.00 0.00 36.73 3.69
148 149 5.221601 TGCTATTGAAGATGCTCTTAGGAGG 60.222 44.000 3.79 0.00 36.73 4.30
149 150 4.703379 ATTGAAGATGCTCTTAGGAGGG 57.297 45.455 3.79 0.00 36.73 4.30
172 173 0.698198 TGGTACCCCCAACTCACCAA 60.698 55.000 10.07 0.00 41.50 3.67
176 177 1.064825 ACCCCCAACTCACCAAGTAG 58.935 55.000 0.00 0.00 37.17 2.57
198 199 2.577449 AACCCAAGTTTGACGCTTTG 57.423 45.000 0.00 0.00 29.61 2.77
199 200 0.744281 ACCCAAGTTTGACGCTTTGG 59.256 50.000 0.00 0.00 35.57 3.28
200 201 0.744281 CCCAAGTTTGACGCTTTGGT 59.256 50.000 1.91 0.00 0.00 3.67
201 202 1.535860 CCCAAGTTTGACGCTTTGGTG 60.536 52.381 1.91 0.00 0.00 4.17
202 203 1.199624 CAAGTTTGACGCTTTGGTGC 58.800 50.000 0.00 0.00 0.00 5.01
203 204 0.102300 AAGTTTGACGCTTTGGTGCC 59.898 50.000 0.00 0.00 0.00 5.01
204 205 0.751643 AGTTTGACGCTTTGGTGCCT 60.752 50.000 0.00 0.00 0.00 4.75
205 206 0.317854 GTTTGACGCTTTGGTGCCTC 60.318 55.000 0.00 0.00 0.00 4.70
207 208 2.665185 GACGCTTTGGTGCCTCGT 60.665 61.111 0.00 0.00 35.98 4.18
208 209 1.373748 GACGCTTTGGTGCCTCGTA 60.374 57.895 0.00 0.00 33.21 3.43
210 211 0.533308 ACGCTTTGGTGCCTCGTAAA 60.533 50.000 0.00 0.00 0.00 2.01
212 213 1.519408 GCTTTGGTGCCTCGTAAAGA 58.481 50.000 0.00 0.00 33.18 2.52
214 215 3.267483 GCTTTGGTGCCTCGTAAAGATA 58.733 45.455 0.00 0.00 33.18 1.98
215 216 3.687698 GCTTTGGTGCCTCGTAAAGATAA 59.312 43.478 0.00 0.00 33.18 1.75
216 217 4.155280 GCTTTGGTGCCTCGTAAAGATAAA 59.845 41.667 0.00 0.00 33.18 1.40
217 218 5.163652 GCTTTGGTGCCTCGTAAAGATAAAT 60.164 40.000 0.00 0.00 33.18 1.40
218 219 6.037830 GCTTTGGTGCCTCGTAAAGATAAATA 59.962 38.462 0.00 0.00 33.18 1.40
219 220 7.548196 TTTGGTGCCTCGTAAAGATAAATAG 57.452 36.000 0.00 0.00 0.00 1.73
220 221 6.229936 TGGTGCCTCGTAAAGATAAATAGT 57.770 37.500 0.00 0.00 0.00 2.12
221 222 6.278363 TGGTGCCTCGTAAAGATAAATAGTC 58.722 40.000 0.00 0.00 0.00 2.59
226 227 7.147794 TGCCTCGTAAAGATAAATAGTCTTCCA 60.148 37.037 0.00 0.00 34.97 3.53
262 263 2.224066 CCCCGTTGATAGTGAGGTGATC 60.224 54.545 0.00 0.00 0.00 2.92
295 296 7.389053 ACTTCATCAATTTCAAGACCAGTCTAC 59.611 37.037 0.00 0.00 39.39 2.59
306 307 1.203063 ACCAGTCTACTCAGGCACTCA 60.203 52.381 0.00 0.00 34.60 3.41
319 320 4.766373 TCAGGCACTCAAAAATGCTCATAA 59.234 37.500 0.00 0.00 41.74 1.90
372 373 6.071221 ACCATGACTTTATGTACCTGTTCGTA 60.071 38.462 0.00 0.00 0.00 3.43
373 374 6.814644 CCATGACTTTATGTACCTGTTCGTAA 59.185 38.462 0.00 0.00 0.00 3.18
374 375 7.010183 CCATGACTTTATGTACCTGTTCGTAAG 59.990 40.741 0.00 0.00 0.00 2.34
377 378 6.752168 ACTTTATGTACCTGTTCGTAAGTGT 58.248 36.000 0.00 0.00 39.48 3.55
378 379 6.865205 ACTTTATGTACCTGTTCGTAAGTGTC 59.135 38.462 0.00 0.00 39.48 3.67
379 380 6.579666 TTATGTACCTGTTCGTAAGTGTCT 57.420 37.500 0.00 0.00 39.48 3.41
404 415 5.861787 GCGTCTGCATTATGTTTTAACCTTT 59.138 36.000 0.00 0.00 42.15 3.11
405 416 6.364976 GCGTCTGCATTATGTTTTAACCTTTT 59.635 34.615 0.00 0.00 42.15 2.27
406 417 7.410407 GCGTCTGCATTATGTTTTAACCTTTTC 60.410 37.037 0.00 0.00 42.15 2.29
493 505 2.487762 TGCCAGTTATCGAAAAAGGCTG 59.512 45.455 16.59 7.84 41.12 4.85
496 508 4.142381 GCCAGTTATCGAAAAAGGCTGAAT 60.142 41.667 10.74 0.00 37.67 2.57
739 762 4.778143 GGAACCCGACGGCTGCAT 62.778 66.667 8.86 0.00 0.00 3.96
840 863 2.202676 GCGCTTCCTCTGGACTCG 60.203 66.667 0.00 0.00 32.42 4.18
952 975 1.950244 CCCCCTCTCCACCTATCCT 59.050 63.158 0.00 0.00 0.00 3.24
961 984 5.519982 CCTCTCCACCTATCCTTCCATCTAT 60.520 48.000 0.00 0.00 0.00 1.98
962 985 5.584913 TCTCCACCTATCCTTCCATCTATC 58.415 45.833 0.00 0.00 0.00 2.08
963 986 4.344978 TCCACCTATCCTTCCATCTATCG 58.655 47.826 0.00 0.00 0.00 2.92
964 987 3.118956 CCACCTATCCTTCCATCTATCGC 60.119 52.174 0.00 0.00 0.00 4.58
965 988 3.100671 ACCTATCCTTCCATCTATCGCC 58.899 50.000 0.00 0.00 0.00 5.54
1106 1129 3.741476 CCTTGCCTTGCCGTGCTC 61.741 66.667 0.00 0.00 0.00 4.26
1144 1190 8.029522 CCATATATACTGTGCTTACACCTACTG 58.970 40.741 0.00 0.00 46.86 2.74
1174 1231 1.268352 CATAGCTAGCTCACCTCCGTC 59.732 57.143 23.26 0.00 0.00 4.79
1315 1372 1.386533 GGATCTGGACGAGACGGTTA 58.613 55.000 0.00 0.00 31.75 2.85
1704 1761 4.717629 TGCGCGAGGGTTGACGAG 62.718 66.667 12.10 0.00 0.00 4.18
2003 2060 2.446341 GCTAACAGCCTCACACGTC 58.554 57.895 0.00 0.00 34.48 4.34
2007 2064 2.357517 CAGCCTCACACGTCACCC 60.358 66.667 0.00 0.00 0.00 4.61
2149 2219 1.679153 TCTAATCGGTGCATGCGTCTA 59.321 47.619 14.09 0.00 0.00 2.59
2169 2239 7.865385 GCGTCTATTGAGATACAAAAGAGAGAT 59.135 37.037 0.00 0.00 42.03 2.75
2178 2248 2.107204 ACAAAAGAGAGATGGGCTGTGT 59.893 45.455 0.00 0.00 0.00 3.72
2208 2278 0.389948 AGAACGTCGTGATCAAGGGC 60.390 55.000 8.84 0.00 0.00 5.19
2238 2308 3.821421 ATGAGGTCGTCCATTTCTACC 57.179 47.619 0.51 0.00 35.89 3.18
2331 2401 4.855388 GCATGACAGTGATTTGTTGCTTAG 59.145 41.667 0.00 0.00 33.90 2.18
2342 2412 9.151471 GTGATTTGTTGCTTAGACTTCATACTA 57.849 33.333 0.00 0.00 0.00 1.82
2405 2490 7.750458 CGTACTTTTAGTCAATGACATGCATTT 59.250 33.333 16.38 0.00 44.68 2.32
2406 2491 9.410556 GTACTTTTAGTCAATGACATGCATTTT 57.589 29.630 16.38 0.00 44.68 1.82
2408 2493 9.979578 ACTTTTAGTCAATGACATGCATTTTAA 57.020 25.926 16.38 0.10 44.68 1.52
2459 2544 6.998673 GCATTCAGTGTATTTCTATAAGGGGT 59.001 38.462 0.00 0.00 0.00 4.95
2460 2545 8.154856 GCATTCAGTGTATTTCTATAAGGGGTA 58.845 37.037 0.00 0.00 0.00 3.69
2473 2558 9.592196 TTCTATAAGGGGTATATAGAACACGTT 57.408 33.333 10.44 4.29 42.85 3.99
2478 2563 3.732721 GGGTATATAGAACACGTTCGCAC 59.267 47.826 4.35 0.63 43.97 5.34
2505 2591 3.283751 AGTGGTAGCTAGCTAGTGTGAG 58.716 50.000 24.78 0.00 0.00 3.51
2528 2616 0.672401 AGAATGTGTGGGTTACGCGG 60.672 55.000 12.47 0.00 42.76 6.46
2602 2714 1.795286 CAACCGAGCTCAAGTTGAGTC 59.205 52.381 29.65 22.85 45.94 3.36
2701 2831 2.899977 CGTAAGCTTGGTGTCGTTTTC 58.100 47.619 9.86 0.00 0.00 2.29
2702 2832 2.349155 CGTAAGCTTGGTGTCGTTTTCC 60.349 50.000 9.86 0.00 0.00 3.13
2705 2835 0.030235 GCTTGGTGTCGTTTTCCCAC 59.970 55.000 0.00 0.00 0.00 4.61
2707 2837 1.953686 CTTGGTGTCGTTTTCCCACAT 59.046 47.619 0.00 0.00 0.00 3.21
2708 2838 2.060050 TGGTGTCGTTTTCCCACATT 57.940 45.000 0.00 0.00 0.00 2.71
2746 2904 6.479660 TCAAAAGACTTGCCATTTTCATTGAC 59.520 34.615 0.00 0.00 0.00 3.18
2758 2916 7.627300 GCCATTTTCATTGACTAAGAAGAGACC 60.627 40.741 0.00 0.00 0.00 3.85
2881 3167 7.148490 GGAACAGAGAGCTATGAAGAAGAAAAC 60.148 40.741 0.00 0.00 0.00 2.43
2900 3186 1.679305 ACATCTGCCGAGGAGTCGT 60.679 57.895 0.00 0.00 45.30 4.34
2902 3188 0.955178 CATCTGCCGAGGAGTCGTAT 59.045 55.000 0.00 0.00 45.30 3.06
2919 3205 2.000215 TATGCGTCATCGTCACCGCT 62.000 55.000 11.89 3.20 45.90 5.52
2949 3235 0.386985 GAACGAGCGACTCCGACTTT 60.387 55.000 0.00 0.00 38.22 2.66
2961 3247 5.392811 CGACTCCGACTTTACCATAGAACTT 60.393 44.000 0.00 0.00 38.22 2.66
2963 3249 4.990257 TCCGACTTTACCATAGAACTTCG 58.010 43.478 0.00 0.00 0.00 3.79
2982 3268 0.811616 GTCATCGAAGCCAATCCGCT 60.812 55.000 0.00 0.00 42.22 5.52
2999 3285 1.093159 GCTAGCAGCTGCACAGAAAT 58.907 50.000 38.24 19.63 45.16 2.17
3014 3300 4.686091 CACAGAAATCACGACTACACATGT 59.314 41.667 0.00 0.00 0.00 3.21
3028 3316 2.548057 ACACATGTCAACGGATGAACAC 59.452 45.455 0.00 0.00 40.50 3.32
3029 3317 2.547634 CACATGTCAACGGATGAACACA 59.452 45.455 0.00 0.00 40.50 3.72
3034 3322 2.162208 GTCAACGGATGAACACATGCAT 59.838 45.455 0.00 0.00 40.50 3.96
3084 3372 5.163663 CGACAAGCTTTGCAAGGGAAATATA 60.164 40.000 10.89 0.00 0.00 0.86
3094 3382 5.193679 GCAAGGGAAATATACAGGACTTGT 58.806 41.667 0.00 0.00 43.96 3.16
3100 3388 4.689612 AATATACAGGACTTGTGCCGAT 57.310 40.909 0.00 0.00 41.10 4.18
3105 3393 1.374252 GGACTTGTGCCGATCGTGT 60.374 57.895 15.09 2.86 0.00 4.49
3123 3411 2.030562 CCTCCGCAAACGACCACT 59.969 61.111 0.00 0.00 43.93 4.00
3214 3505 3.288308 AAGAGCTCCTCGCACACGG 62.288 63.158 10.93 0.00 42.61 4.94
3215 3506 4.057428 GAGCTCCTCGCACACGGT 62.057 66.667 0.87 0.00 42.61 4.83
3293 3584 8.292448 GTCATCATCGTTGCCAAATAGAAATAT 58.708 33.333 0.00 0.00 0.00 1.28
3326 3618 2.055042 GCCACCACAACAACCCACA 61.055 57.895 0.00 0.00 0.00 4.17
3329 3621 1.001887 ACCACAACAACCCACACGT 60.002 52.632 0.00 0.00 0.00 4.49
3331 3623 1.027255 CCACAACAACCCACACGTCA 61.027 55.000 0.00 0.00 0.00 4.35
3403 3720 1.450312 CCAAGGAGGACGATGGCAC 60.450 63.158 0.00 0.00 41.22 5.01
3404 3721 2.184020 CCAAGGAGGACGATGGCACA 62.184 60.000 0.00 0.00 42.31 4.57
3525 3842 0.178068 AAAGAGTATGATGCCCGCGT 59.822 50.000 4.92 0.00 0.00 6.01
3527 3844 1.227263 GAGTATGATGCCCGCGTGT 60.227 57.895 4.92 0.00 0.00 4.49
3571 3888 7.544804 ACAAAAGCCAAAGATAGGATTTCTT 57.455 32.000 0.00 0.00 43.37 2.52
3645 3964 1.251527 CCAGTCACCGTAGAGCACCT 61.252 60.000 0.00 0.00 0.00 4.00
3646 3965 0.171455 CAGTCACCGTAGAGCACCTC 59.829 60.000 0.00 0.00 0.00 3.85
3663 3996 3.710722 CCAGTCAGCTCCCGCCTT 61.711 66.667 0.00 0.00 36.60 4.35
3689 4022 1.063867 AGGCTGTCCTATACGGTCACT 60.064 52.381 0.00 0.00 41.91 3.41
3710 4043 4.207281 CCAGTAGCCGCAGCGCTA 62.207 66.667 10.99 11.89 46.67 4.26
3723 4056 2.660802 CGCTACCGGAACCTTGGT 59.339 61.111 9.46 0.00 42.34 3.67
3738 4071 4.388499 GGTGCACCCGTCGTCCAT 62.388 66.667 26.31 0.00 0.00 3.41
3766 6345 1.532316 TCGACCCAACCGGAAGAGT 60.532 57.895 9.46 0.00 34.64 3.24
3794 6373 2.285368 ACCCGGATCTTGCCAGGA 60.285 61.111 0.73 0.00 0.00 3.86
3826 6405 1.414158 CACCATCGGAGGACACCTAT 58.586 55.000 0.93 0.00 31.76 2.57
3831 6421 3.487372 CATCGGAGGACACCTATCACTA 58.513 50.000 0.00 0.00 31.76 2.74
3832 6422 3.210232 TCGGAGGACACCTATCACTAG 57.790 52.381 0.00 0.00 31.76 2.57
3833 6423 1.609555 CGGAGGACACCTATCACTAGC 59.390 57.143 0.00 0.00 31.76 3.42
3834 6424 2.667470 GGAGGACACCTATCACTAGCA 58.333 52.381 0.00 0.00 31.76 3.49
3835 6425 2.625790 GGAGGACACCTATCACTAGCAG 59.374 54.545 0.00 0.00 31.76 4.24
3836 6426 3.292460 GAGGACACCTATCACTAGCAGT 58.708 50.000 0.00 0.00 31.76 4.40
3837 6427 4.462133 GAGGACACCTATCACTAGCAGTA 58.538 47.826 0.00 0.00 31.76 2.74
3838 6428 4.465886 AGGACACCTATCACTAGCAGTAG 58.534 47.826 0.00 0.00 28.47 2.57
3839 6429 3.004944 GGACACCTATCACTAGCAGTAGC 59.995 52.174 0.00 0.00 42.56 3.58
3840 6430 7.401321 AGGACACCTATCACTAGCAGTAGCT 62.401 48.000 0.00 0.00 43.36 3.32
3841 6431 8.787528 AGGACACCTATCACTAGCAGTAGCTT 62.788 46.154 0.00 0.00 39.45 3.74
3916 6506 1.534235 AGGAACAGGGCGTGAGAGT 60.534 57.895 14.98 0.00 0.00 3.24
3920 6510 1.122019 AACAGGGCGTGAGAGTCCTT 61.122 55.000 14.98 0.00 0.00 3.36
3929 6519 2.093973 CGTGAGAGTCCTTGCCACTTAT 60.094 50.000 0.00 0.00 0.00 1.73
4091 6681 9.003658 ACAATGTCTACAAAGAAGGAGTAATTG 57.996 33.333 0.00 0.00 32.16 2.32
4168 6758 7.398746 CGACAATTACGCTTGATGAAATCTTA 58.601 34.615 0.57 0.00 45.81 2.10
4181 6771 4.072131 TGAAATCTTAACTGGCCTCACAC 58.928 43.478 3.32 0.00 0.00 3.82
4197 6787 3.997021 CTCACACACCAATACTTGTCCTC 59.003 47.826 0.00 0.00 0.00 3.71
4198 6788 3.389656 TCACACACCAATACTTGTCCTCA 59.610 43.478 0.00 0.00 0.00 3.86
4200 6790 4.393062 CACACACCAATACTTGTCCTCATC 59.607 45.833 0.00 0.00 0.00 2.92
4204 6794 5.003160 CACCAATACTTGTCCTCATCACAA 58.997 41.667 0.00 0.00 32.75 3.33
4205 6795 5.649395 CACCAATACTTGTCCTCATCACAAT 59.351 40.000 0.00 0.00 33.30 2.71
4206 6796 6.823182 CACCAATACTTGTCCTCATCACAATA 59.177 38.462 0.00 0.00 33.30 1.90
4207 6797 6.823689 ACCAATACTTGTCCTCATCACAATAC 59.176 38.462 0.00 0.00 33.30 1.89
4214 9437 4.929211 TGTCCTCATCACAATACTTGTTCG 59.071 41.667 0.00 0.00 43.23 3.95
4342 9565 6.985059 ACTTTAGTTTTCACTAGAGACACCAC 59.015 38.462 0.00 0.00 39.21 4.16
4499 9722 8.379902 GTTTTAAGTGAACAAACAACAATCCAG 58.620 33.333 0.00 0.00 31.81 3.86
4609 9834 3.455910 CCATAACTGAGATCCCAGACCAA 59.544 47.826 11.70 0.00 37.59 3.67
4710 9935 4.037923 TCAAAGAATCTTTTGCTCCCACAC 59.962 41.667 5.36 0.00 37.83 3.82
4711 9936 3.228188 AGAATCTTTTGCTCCCACACA 57.772 42.857 0.00 0.00 0.00 3.72
4721 9946 2.171209 CTCCCACACACGAGCATGGA 62.171 60.000 4.78 0.00 33.80 3.41
4794 10019 4.020543 CCTAGATATGAGTCCCCAGCTAC 58.979 52.174 0.00 0.00 0.00 3.58
4850 10075 4.096382 CCCCCAAACAAAAGATACATCTCG 59.904 45.833 0.00 0.00 35.76 4.04
4869 10094 5.391256 TCTCGGAAGTAATGGCCTCTATAA 58.609 41.667 3.32 0.00 0.00 0.98
4910 10135 7.771183 TCAAAATAGACATCAAATAAGTGGGC 58.229 34.615 0.00 0.00 0.00 5.36
4967 10193 2.224548 GCCCCTGTAAGACAGTTCTTGT 60.225 50.000 5.92 0.00 44.50 3.16
5048 10274 8.469200 CCCTTATCAATATTTTGAAGTGCAAGA 58.531 33.333 2.59 0.00 44.70 3.02
5154 10382 8.607459 CATGAACAGTATGGAGATCACTTTTAC 58.393 37.037 0.00 0.00 43.62 2.01
5244 10476 1.134159 CCAGGCATCCAAGAAGAGGAG 60.134 57.143 0.00 0.00 38.83 3.69
5280 10512 2.330440 TGCACACTGACAACACATCT 57.670 45.000 0.00 0.00 0.00 2.90
5281 10513 1.941975 TGCACACTGACAACACATCTG 59.058 47.619 0.00 0.00 0.00 2.90
5284 10516 1.768275 ACACTGACAACACATCTGGGA 59.232 47.619 0.00 0.00 0.00 4.37
5292 10524 5.178096 ACAACACATCTGGGAATCATACA 57.822 39.130 0.00 0.00 0.00 2.29
5349 10581 5.959618 ACTTTAGGTAGCATTTTGGACAC 57.040 39.130 0.00 0.00 0.00 3.67
5407 10640 5.351948 AGGATCTCCTTGTTTAAGCTCTC 57.648 43.478 0.00 0.00 46.09 3.20
5519 10753 4.534647 ATCTCCAGAGCCTCTAGAAGAA 57.465 45.455 0.00 0.00 0.00 2.52
5622 10867 1.421268 TCATGTATCACCTCATGGGCC 59.579 52.381 0.00 0.00 40.94 5.80
5623 10868 1.143481 CATGTATCACCTCATGGGCCA 59.857 52.381 9.61 9.61 38.10 5.36
5690 10935 3.891366 CACAAGGAATTCCCAACTCACTT 59.109 43.478 21.22 3.18 37.41 3.16
5734 10979 6.202516 TCAAGTTCCAAAACTAAACCACTG 57.797 37.500 0.00 0.00 45.07 3.66
5843 11088 5.425539 TGGTTTGGGGAAATAAGTTTGTCAA 59.574 36.000 0.00 0.00 0.00 3.18
5864 11109 7.604164 TGTCAAATAAAACAGGAGCTCTAGAAG 59.396 37.037 14.64 1.99 0.00 2.85
5933 11178 5.629079 AGGACGAAACCTGAATTCAATTC 57.371 39.130 9.88 12.51 39.01 2.17
6067 11321 9.643693 ACAAGAAGATTAAAATGCCTTGTTATG 57.356 29.630 0.00 0.00 39.46 1.90
6089 11343 6.241207 TGTAGTTTGCTGATTAACTCAAGC 57.759 37.500 0.00 0.00 36.16 4.01
6090 11344 4.410492 AGTTTGCTGATTAACTCAAGCG 57.590 40.909 0.00 0.00 33.39 4.68
6225 11479 8.755941 CGAACAAGACAATCGAACATATATCTT 58.244 33.333 0.00 0.00 38.82 2.40
6312 11566 3.442996 GTGATCGACCACCTGAAGG 57.557 57.895 0.00 0.00 42.17 3.46
6452 11706 0.776176 AGATGGGCCTGGGAATGATC 59.224 55.000 4.53 0.00 0.00 2.92
6513 11767 2.043752 CCCAGCCCATGATGCACA 60.044 61.111 9.43 0.00 0.00 4.57
6524 11778 4.697756 ATGCACACGTCCACCCCG 62.698 66.667 0.00 0.00 0.00 5.73
6531 11785 3.980989 CGTCCACCCCGTTCGTCA 61.981 66.667 0.00 0.00 0.00 4.35
6680 11935 6.086222 CACGTAGTCCAAAATCCAAATCTTG 58.914 40.000 0.00 0.00 41.61 3.02
6695 11950 2.281484 TTGGCGCACTGTTCCCTC 60.281 61.111 10.83 0.00 0.00 4.30
6717 11979 5.661458 TCCGAACCTCTGATTGATTCTTAC 58.339 41.667 0.00 0.00 0.00 2.34
6744 12006 0.740164 CACGAATCTCTGCTGCTGCT 60.740 55.000 17.00 0.00 40.48 4.24
6747 12009 0.745128 GAATCTCTGCTGCTGCTGCT 60.745 55.000 27.67 10.25 40.48 4.24
6748 12010 1.027255 AATCTCTGCTGCTGCTGCTG 61.027 55.000 27.67 26.32 40.48 4.41
6820 12082 0.321919 TGTGCCAGAAGCTAAGCCAG 60.322 55.000 0.00 0.00 44.23 4.85
6835 12097 2.281970 CAGCAGCAGACCAAGCCA 60.282 61.111 0.00 0.00 0.00 4.75
6879 12141 0.387622 TACGTCGTACAAGCACCTGC 60.388 55.000 0.00 0.00 42.49 4.85
6917 12179 0.363512 CATGAAAGTCTGTCGACGCG 59.636 55.000 11.62 3.53 44.93 6.01
6944 12206 0.462581 ACCCTGCAGCATCGTGTATG 60.463 55.000 8.66 0.00 38.74 2.39
6949 12211 1.923864 TGCAGCATCGTGTATGTTACG 59.076 47.619 0.00 0.00 42.56 3.18
6974 12267 5.389778 TCAATTGCACATGATTTGTCGTAC 58.610 37.500 0.00 0.00 36.00 3.67
7146 12439 0.391263 AACCTCATCCGGCTTTCGAC 60.391 55.000 0.00 0.00 42.43 4.20
7164 12457 0.662619 ACATGCTGTTTGTGTCACCG 59.337 50.000 0.00 0.00 0.00 4.94
7244 12537 2.187424 GAGGCAGCTCAGCTCAGG 59.813 66.667 0.00 0.00 36.40 3.86
7245 12538 2.607134 AGGCAGCTCAGCTCAGGT 60.607 61.111 0.00 0.00 36.40 4.00
7246 12539 2.125188 GGCAGCTCAGCTCAGGTC 60.125 66.667 0.00 0.00 36.40 3.85
7247 12540 2.661399 GCAGCTCAGCTCAGGTCA 59.339 61.111 0.00 0.00 36.40 4.02
7248 12541 1.448189 GCAGCTCAGCTCAGGTCAG 60.448 63.158 0.00 0.00 36.40 3.51
7249 12542 1.448189 CAGCTCAGCTCAGGTCAGC 60.448 63.158 0.00 0.00 36.40 4.26
7351 12644 2.821366 GACCTCCATGCAGGCACG 60.821 66.667 1.32 0.00 36.98 5.34
7468 12761 3.179830 GTCCACACTATGCTAACAGTCG 58.820 50.000 0.00 0.00 0.00 4.18
7489 12789 2.098770 GGTAGTACTGTTAGTGGGAGCG 59.901 54.545 5.39 0.00 0.00 5.03
7516 12819 6.536582 TCTGCTTAGCTTCAACAGTGATAATC 59.463 38.462 5.60 0.00 32.48 1.75
7595 12898 0.391661 ACACACATGCTTAGGCGGAG 60.392 55.000 0.00 0.00 42.25 4.63
7757 13319 1.648467 AAAGAGAGGGAAATGCGCGC 61.648 55.000 27.26 27.26 34.07 6.86
7764 13326 2.094066 GGAAATGCGCGCCCAAAAG 61.094 57.895 30.77 0.00 0.00 2.27
7771 13333 2.561373 GCGCCCAAAAGAAGACCG 59.439 61.111 0.00 0.00 0.00 4.79
7870 13452 2.293677 TCGATTTGACGTCCCTGATG 57.706 50.000 14.12 0.00 34.70 3.07
7871 13453 1.822371 TCGATTTGACGTCCCTGATGA 59.178 47.619 14.12 1.19 34.70 2.92
7872 13454 2.430694 TCGATTTGACGTCCCTGATGAT 59.569 45.455 14.12 0.00 34.70 2.45
7879 13461 1.066858 ACGTCCCTGATGATCACACAC 60.067 52.381 0.00 0.00 0.00 3.82
7882 13464 0.620030 CCCTGATGATCACACACCCA 59.380 55.000 0.00 0.00 0.00 4.51
7885 13467 0.035152 TGATGATCACACACCCAGCC 60.035 55.000 0.00 0.00 0.00 4.85
7895 13477 3.234730 ACCCAGCCGGATCGGATC 61.235 66.667 11.40 9.54 44.45 3.36
7997 13579 2.202362 CGACGACGGTGAGCTGAG 60.202 66.667 0.00 0.00 35.72 3.35
8031 13618 5.237127 TGCAGGATAAGAATAAGAACATGCG 59.763 40.000 0.00 0.00 0.00 4.73
8057 13645 2.435693 GGTGGGGATCTGGACCGAG 61.436 68.421 0.00 0.00 0.00 4.63
8142 13740 2.548480 GCGGTACAGCTAATGGGATTTC 59.452 50.000 10.99 0.00 0.00 2.17
8143 13741 2.800544 CGGTACAGCTAATGGGATTTCG 59.199 50.000 0.00 0.00 0.00 3.46
8145 13743 4.448210 GGTACAGCTAATGGGATTTCGAA 58.552 43.478 0.00 0.00 0.00 3.71
8146 13744 4.511826 GGTACAGCTAATGGGATTTCGAAG 59.488 45.833 0.00 0.00 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 9.752961 GCTGAAAGTTAAAATTTTACCACCTAA 57.247 29.630 10.18 0.00 35.30 2.69
13 14 8.915036 TGCTGAAAGTTAAAATTTTACCACCTA 58.085 29.630 10.18 0.00 35.30 3.08
14 15 7.787028 TGCTGAAAGTTAAAATTTTACCACCT 58.213 30.769 10.18 2.27 35.30 4.00
15 16 8.426881 TTGCTGAAAGTTAAAATTTTACCACC 57.573 30.769 10.18 0.13 35.30 4.61
28 29 9.677567 GTTCATTAGTTGATTTGCTGAAAGTTA 57.322 29.630 0.00 0.00 32.19 2.24
29 30 8.196771 TGTTCATTAGTTGATTTGCTGAAAGTT 58.803 29.630 0.00 0.00 32.19 2.66
30 31 7.715657 TGTTCATTAGTTGATTTGCTGAAAGT 58.284 30.769 0.00 0.00 32.19 2.66
31 32 8.578308 TTGTTCATTAGTTGATTTGCTGAAAG 57.422 30.769 0.00 0.00 33.34 2.62
32 33 7.169645 GCTTGTTCATTAGTTGATTTGCTGAAA 59.830 33.333 0.00 0.00 33.34 2.69
33 34 6.642131 GCTTGTTCATTAGTTGATTTGCTGAA 59.358 34.615 0.00 0.00 33.34 3.02
34 35 6.151691 GCTTGTTCATTAGTTGATTTGCTGA 58.848 36.000 0.00 0.00 33.34 4.26
35 36 5.921976 TGCTTGTTCATTAGTTGATTTGCTG 59.078 36.000 0.00 0.00 33.34 4.41
36 37 6.088016 TGCTTGTTCATTAGTTGATTTGCT 57.912 33.333 0.00 0.00 33.34 3.91
37 38 6.366877 ACATGCTTGTTCATTAGTTGATTTGC 59.633 34.615 0.00 0.00 33.34 3.68
38 39 7.062605 GGACATGCTTGTTCATTAGTTGATTTG 59.937 37.037 6.70 0.00 35.79 2.32
39 40 7.092716 GGACATGCTTGTTCATTAGTTGATTT 58.907 34.615 6.70 0.00 35.79 2.17
40 41 6.209192 TGGACATGCTTGTTCATTAGTTGATT 59.791 34.615 9.59 0.00 36.39 2.57
41 42 5.711506 TGGACATGCTTGTTCATTAGTTGAT 59.288 36.000 9.59 0.00 36.39 2.57
42 43 5.048782 GTGGACATGCTTGTTCATTAGTTGA 60.049 40.000 16.14 0.00 43.28 3.18
43 44 5.156355 GTGGACATGCTTGTTCATTAGTTG 58.844 41.667 16.14 0.00 43.28 3.16
44 45 4.826733 TGTGGACATGCTTGTTCATTAGTT 59.173 37.500 16.14 0.00 43.28 2.24
45 46 4.216257 GTGTGGACATGCTTGTTCATTAGT 59.784 41.667 16.14 0.00 43.28 2.24
46 47 4.456911 AGTGTGGACATGCTTGTTCATTAG 59.543 41.667 16.14 0.00 43.28 1.73
47 48 4.397420 AGTGTGGACATGCTTGTTCATTA 58.603 39.130 16.14 6.87 43.28 1.90
48 49 3.225104 AGTGTGGACATGCTTGTTCATT 58.775 40.909 16.14 3.91 43.28 2.57
49 50 2.867624 AGTGTGGACATGCTTGTTCAT 58.132 42.857 16.14 0.00 43.28 2.57
50 51 2.346766 AGTGTGGACATGCTTGTTCA 57.653 45.000 9.59 9.59 39.11 3.18
51 52 2.880890 AGAAGTGTGGACATGCTTGTTC 59.119 45.455 6.70 5.33 35.79 3.18
52 53 2.936202 AGAAGTGTGGACATGCTTGTT 58.064 42.857 6.70 0.00 35.79 2.83
53 54 2.645838 AGAAGTGTGGACATGCTTGT 57.354 45.000 4.68 4.68 39.32 3.16
54 55 3.668447 ACTAGAAGTGTGGACATGCTTG 58.332 45.455 0.00 0.00 0.00 4.01
55 56 3.324846 TGACTAGAAGTGTGGACATGCTT 59.675 43.478 0.00 0.00 0.00 3.91
56 57 2.899900 TGACTAGAAGTGTGGACATGCT 59.100 45.455 0.00 0.00 0.00 3.79
57 58 3.319137 TGACTAGAAGTGTGGACATGC 57.681 47.619 0.00 0.00 0.00 4.06
58 59 5.046529 GCTATGACTAGAAGTGTGGACATG 58.953 45.833 0.00 0.00 0.00 3.21
59 60 4.711846 TGCTATGACTAGAAGTGTGGACAT 59.288 41.667 0.00 0.00 0.00 3.06
60 61 4.086457 TGCTATGACTAGAAGTGTGGACA 58.914 43.478 0.00 0.00 0.00 4.02
61 62 4.720649 TGCTATGACTAGAAGTGTGGAC 57.279 45.455 0.00 0.00 0.00 4.02
62 63 4.956075 TGATGCTATGACTAGAAGTGTGGA 59.044 41.667 0.00 0.00 0.00 4.02
63 64 5.268118 TGATGCTATGACTAGAAGTGTGG 57.732 43.478 0.00 0.00 0.00 4.17
64 65 7.038048 TCTTTGATGCTATGACTAGAAGTGTG 58.962 38.462 0.00 0.00 0.00 3.82
65 66 7.175347 TCTTTGATGCTATGACTAGAAGTGT 57.825 36.000 0.00 0.00 0.00 3.55
66 67 9.190858 GTATCTTTGATGCTATGACTAGAAGTG 57.809 37.037 0.00 0.00 0.00 3.16
67 68 9.142014 AGTATCTTTGATGCTATGACTAGAAGT 57.858 33.333 0.00 0.00 0.00 3.01
71 72 9.853555 CCTTAGTATCTTTGATGCTATGACTAG 57.146 37.037 14.96 0.00 0.00 2.57
72 73 8.307483 GCCTTAGTATCTTTGATGCTATGACTA 58.693 37.037 14.96 2.58 0.00 2.59
73 74 7.016072 AGCCTTAGTATCTTTGATGCTATGACT 59.984 37.037 14.96 9.31 0.00 3.41
74 75 7.117523 CAGCCTTAGTATCTTTGATGCTATGAC 59.882 40.741 14.96 7.80 0.00 3.06
75 76 7.157347 CAGCCTTAGTATCTTTGATGCTATGA 58.843 38.462 14.96 1.01 0.00 2.15
76 77 6.128336 GCAGCCTTAGTATCTTTGATGCTATG 60.128 42.308 6.29 8.22 0.00 2.23
77 78 5.936956 GCAGCCTTAGTATCTTTGATGCTAT 59.063 40.000 6.29 0.00 0.00 2.97
78 79 5.070981 AGCAGCCTTAGTATCTTTGATGCTA 59.929 40.000 0.00 2.13 38.43 3.49
79 80 4.133078 GCAGCCTTAGTATCTTTGATGCT 58.867 43.478 3.87 3.87 0.00 3.79
80 81 4.133078 AGCAGCCTTAGTATCTTTGATGC 58.867 43.478 0.00 0.00 0.00 3.91
81 82 7.572724 GCAATAGCAGCCTTAGTATCTTTGATG 60.573 40.741 0.00 0.00 41.58 3.07
82 83 6.429385 GCAATAGCAGCCTTAGTATCTTTGAT 59.571 38.462 0.00 0.00 41.58 2.57
83 84 5.760253 GCAATAGCAGCCTTAGTATCTTTGA 59.240 40.000 0.00 0.00 41.58 2.69
84 85 5.762218 AGCAATAGCAGCCTTAGTATCTTTG 59.238 40.000 0.00 0.00 45.49 2.77
85 86 5.762218 CAGCAATAGCAGCCTTAGTATCTTT 59.238 40.000 0.00 0.00 45.49 2.52
86 87 5.303971 CAGCAATAGCAGCCTTAGTATCTT 58.696 41.667 0.00 0.00 45.49 2.40
87 88 4.802248 GCAGCAATAGCAGCCTTAGTATCT 60.802 45.833 0.00 0.00 46.35 1.98
88 89 3.434984 GCAGCAATAGCAGCCTTAGTATC 59.565 47.826 0.00 0.00 46.35 2.24
89 90 3.406764 GCAGCAATAGCAGCCTTAGTAT 58.593 45.455 0.00 0.00 46.35 2.12
90 91 2.838736 GCAGCAATAGCAGCCTTAGTA 58.161 47.619 0.00 0.00 46.35 1.82
91 92 1.673168 GCAGCAATAGCAGCCTTAGT 58.327 50.000 0.00 0.00 46.35 2.24
98 99 5.587844 CCTTATTATAGGGCAGCAATAGCAG 59.412 44.000 0.00 0.00 45.49 4.24
99 100 5.500234 CCTTATTATAGGGCAGCAATAGCA 58.500 41.667 0.00 0.00 45.49 3.49
110 111 7.624549 TCTTCAATAGCAGCCTTATTATAGGG 58.375 38.462 0.00 0.00 35.74 3.53
111 112 9.107177 CATCTTCAATAGCAGCCTTATTATAGG 57.893 37.037 0.00 0.00 38.40 2.57
112 113 8.610896 GCATCTTCAATAGCAGCCTTATTATAG 58.389 37.037 0.00 0.00 0.00 1.31
113 114 8.324306 AGCATCTTCAATAGCAGCCTTATTATA 58.676 33.333 0.00 0.00 0.00 0.98
114 115 7.173722 AGCATCTTCAATAGCAGCCTTATTAT 58.826 34.615 0.00 0.00 0.00 1.28
115 116 6.537355 AGCATCTTCAATAGCAGCCTTATTA 58.463 36.000 0.00 0.00 0.00 0.98
116 117 5.383476 AGCATCTTCAATAGCAGCCTTATT 58.617 37.500 0.00 0.00 0.00 1.40
117 118 4.983053 AGCATCTTCAATAGCAGCCTTAT 58.017 39.130 0.00 0.00 0.00 1.73
118 119 4.384056 GAGCATCTTCAATAGCAGCCTTA 58.616 43.478 0.00 0.00 0.00 2.69
119 120 3.212685 GAGCATCTTCAATAGCAGCCTT 58.787 45.455 0.00 0.00 0.00 4.35
120 121 2.848691 GAGCATCTTCAATAGCAGCCT 58.151 47.619 0.00 0.00 0.00 4.58
134 135 2.502295 CATTGCCCTCCTAAGAGCATC 58.498 52.381 0.00 0.00 38.96 3.91
135 136 1.144503 CCATTGCCCTCCTAAGAGCAT 59.855 52.381 0.00 0.00 38.96 3.79
136 137 0.548031 CCATTGCCCTCCTAAGAGCA 59.452 55.000 0.00 0.00 38.96 4.26
137 138 0.548510 ACCATTGCCCTCCTAAGAGC 59.451 55.000 0.00 0.00 38.96 4.09
138 139 2.104963 GGTACCATTGCCCTCCTAAGAG 59.895 54.545 7.15 0.00 40.09 2.85
139 140 2.124411 GGTACCATTGCCCTCCTAAGA 58.876 52.381 7.15 0.00 0.00 2.10
140 141 2.640316 GGTACCATTGCCCTCCTAAG 57.360 55.000 7.15 0.00 0.00 2.18
154 155 2.668861 ACTTGGTGAGTTGGGGGTACC 61.669 57.143 2.17 2.17 42.46 3.34
155 156 0.769247 ACTTGGTGAGTTGGGGGTAC 59.231 55.000 0.00 0.00 33.92 3.34
166 167 2.092103 ACTTGGGTTTGCTACTTGGTGA 60.092 45.455 0.00 0.00 0.00 4.02
193 194 1.519408 TCTTTACGAGGCACCAAAGC 58.481 50.000 0.00 0.00 0.00 3.51
194 195 5.873179 TTTATCTTTACGAGGCACCAAAG 57.127 39.130 0.00 0.00 0.00 2.77
195 196 7.107542 ACTATTTATCTTTACGAGGCACCAAA 58.892 34.615 0.00 0.00 0.00 3.28
196 197 6.646267 ACTATTTATCTTTACGAGGCACCAA 58.354 36.000 0.00 0.00 0.00 3.67
197 198 6.097839 AGACTATTTATCTTTACGAGGCACCA 59.902 38.462 0.00 0.00 0.00 4.17
198 199 6.514063 AGACTATTTATCTTTACGAGGCACC 58.486 40.000 0.00 0.00 0.00 5.01
199 200 7.169476 GGAAGACTATTTATCTTTACGAGGCAC 59.831 40.741 0.00 0.00 36.53 5.01
200 201 7.147794 TGGAAGACTATTTATCTTTACGAGGCA 60.148 37.037 0.00 0.00 36.53 4.75
201 202 7.208080 TGGAAGACTATTTATCTTTACGAGGC 58.792 38.462 0.00 0.00 36.53 4.70
202 203 9.765795 ATTGGAAGACTATTTATCTTTACGAGG 57.234 33.333 0.00 0.00 36.53 4.63
210 211 7.227512 CGCCTTTCATTGGAAGACTATTTATCT 59.772 37.037 6.25 0.00 33.82 1.98
212 213 6.263168 CCGCCTTTCATTGGAAGACTATTTAT 59.737 38.462 6.25 0.00 33.82 1.40
214 215 4.399303 CCGCCTTTCATTGGAAGACTATTT 59.601 41.667 6.25 0.00 33.82 1.40
215 216 3.947834 CCGCCTTTCATTGGAAGACTATT 59.052 43.478 6.25 0.00 33.82 1.73
216 217 3.545703 CCGCCTTTCATTGGAAGACTAT 58.454 45.455 6.25 0.00 33.82 2.12
217 218 2.939640 GCCGCCTTTCATTGGAAGACTA 60.940 50.000 6.25 0.00 33.82 2.59
218 219 1.826385 CCGCCTTTCATTGGAAGACT 58.174 50.000 6.25 0.00 33.82 3.24
219 220 0.171231 GCCGCCTTTCATTGGAAGAC 59.829 55.000 6.25 0.00 33.82 3.01
220 221 0.251121 TGCCGCCTTTCATTGGAAGA 60.251 50.000 6.25 0.00 33.82 2.87
221 222 0.109132 GTGCCGCCTTTCATTGGAAG 60.109 55.000 0.00 0.00 33.82 3.46
226 227 2.679996 GGGGTGCCGCCTTTCATT 60.680 61.111 0.00 0.00 37.43 2.57
276 277 5.641209 CCTGAGTAGACTGGTCTTGAAATTG 59.359 44.000 8.60 0.00 40.93 2.32
295 296 2.555325 TGAGCATTTTTGAGTGCCTGAG 59.445 45.455 0.00 0.00 42.20 3.35
306 307 5.302823 GCACCCTATCCTTATGAGCATTTTT 59.697 40.000 0.00 0.00 0.00 1.94
319 320 2.786495 CGCACGAGCACCCTATCCT 61.786 63.158 5.50 0.00 42.27 3.24
348 349 5.175859 ACGAACAGGTACATAAAGTCATGG 58.824 41.667 0.00 0.00 0.00 3.66
493 505 6.034683 GCCCACGACGATAATTCTGTATATTC 59.965 42.308 0.00 0.00 0.00 1.75
496 508 4.321452 GGCCCACGACGATAATTCTGTATA 60.321 45.833 0.00 0.00 0.00 1.47
568 580 0.317269 ACGTGTCGACCGTACACAAG 60.317 55.000 24.18 6.45 46.05 3.16
628 640 2.124570 CCGAATCCTGTGGGGCAG 60.125 66.667 0.00 0.00 44.63 4.85
840 863 1.722011 CCTTCCACATGACCACGTAC 58.278 55.000 0.00 0.00 0.00 3.67
952 975 0.827925 AGGCGAGGCGATAGATGGAA 60.828 55.000 0.00 0.00 39.76 3.53
1089 1112 3.741476 GAGCACGGCAAGGCAAGG 61.741 66.667 0.00 0.00 0.00 3.61
1090 1113 2.670934 AGAGCACGGCAAGGCAAG 60.671 61.111 0.00 0.00 0.00 4.01
1106 1129 5.010719 ACAGTATATATGGTGGTCGTTGGAG 59.989 44.000 0.00 0.00 0.00 3.86
1144 1190 3.181486 TGAGCTAGCTATGTGTGTGTAGC 60.181 47.826 19.38 0.34 42.77 3.58
2003 2060 0.843309 TATGCAGGGTATGTGGGGTG 59.157 55.000 0.00 0.00 0.00 4.61
2123 2189 3.612717 CGCATGCACCGATTAGATAGACT 60.613 47.826 19.57 0.00 0.00 3.24
2134 2200 0.174617 TCAATAGACGCATGCACCGA 59.825 50.000 19.57 5.03 0.00 4.69
2149 2219 6.060788 GCCCATCTCTCTTTTGTATCTCAAT 58.939 40.000 0.00 0.00 35.84 2.57
2169 2239 2.280797 GCTTCGTCACACAGCCCA 60.281 61.111 0.00 0.00 0.00 5.36
2208 2278 0.108615 ACGACCTCATTGGAGCTTCG 60.109 55.000 10.52 10.52 44.41 3.79
2405 2490 7.686434 AGTTGGTTGAAGCTAGACCTAATTAA 58.314 34.615 12.59 0.00 34.52 1.40
2406 2491 7.253905 AGTTGGTTGAAGCTAGACCTAATTA 57.746 36.000 12.59 0.00 34.52 1.40
2407 2492 6.128138 AGTTGGTTGAAGCTAGACCTAATT 57.872 37.500 12.59 0.00 34.52 1.40
2408 2493 5.763876 AGTTGGTTGAAGCTAGACCTAAT 57.236 39.130 12.59 3.92 34.52 1.73
2459 2544 6.727215 TGTATGTGCGAACGTGTTCTATATA 58.273 36.000 10.70 5.56 37.44 0.86
2460 2545 5.584442 TGTATGTGCGAACGTGTTCTATAT 58.416 37.500 10.70 6.34 37.44 0.86
2473 2558 1.548719 AGCTACCACTTGTATGTGCGA 59.451 47.619 0.00 0.00 36.68 5.10
2478 2563 5.067936 ACACTAGCTAGCTACCACTTGTATG 59.932 44.000 20.67 9.27 0.00 2.39
2505 2591 1.196808 CGTAACCCACACATTCTGCAC 59.803 52.381 0.00 0.00 0.00 4.57
2528 2616 3.454960 GAAGTATGCAAGCGCGGCC 62.455 63.158 21.46 8.74 42.97 6.13
2532 2620 2.023320 GCGGAAGTATGCAAGCGC 59.977 61.111 0.00 0.00 39.24 5.92
2602 2714 4.920340 CCAAAATCCTCGATCACTATCTCG 59.080 45.833 0.00 0.00 36.25 4.04
2721 2879 6.479660 GTCAATGAAAATGGCAAGTCTTTTGA 59.520 34.615 1.54 6.02 0.00 2.69
2746 2904 5.004922 AGCAATTCTCGGTCTCTTCTTAG 57.995 43.478 0.00 0.00 0.00 2.18
2758 2916 4.274214 TGCCAATTATCTGAGCAATTCTCG 59.726 41.667 0.00 0.00 44.86 4.04
2881 3167 1.226802 CGACTCCTCGGCAGATGTG 60.227 63.158 0.00 0.00 36.16 3.21
2963 3249 0.811616 AGCGGATTGGCTTCGATGAC 60.812 55.000 1.89 0.00 41.39 3.06
2982 3268 2.079158 GTGATTTCTGTGCAGCTGCTA 58.921 47.619 36.61 24.68 42.66 3.49
2999 3285 2.606065 CCGTTGACATGTGTAGTCGTGA 60.606 50.000 1.15 0.00 38.83 4.35
3014 3300 1.889545 TGCATGTGTTCATCCGTTGA 58.110 45.000 0.00 0.00 31.15 3.18
3028 3316 2.030893 AGTTGTCGGTTGTTCATGCATG 60.031 45.455 21.07 21.07 0.00 4.06
3029 3317 2.226437 GAGTTGTCGGTTGTTCATGCAT 59.774 45.455 0.00 0.00 0.00 3.96
3034 3322 2.696707 AGTAGGAGTTGTCGGTTGTTCA 59.303 45.455 0.00 0.00 0.00 3.18
3084 3372 1.079819 CGATCGGCACAAGTCCTGT 60.080 57.895 7.38 0.00 39.56 4.00
3094 3382 3.822192 CGGAGGACACGATCGGCA 61.822 66.667 20.98 0.00 0.00 5.69
3105 3393 2.029964 GTGGTCGTTTGCGGAGGA 59.970 61.111 0.00 0.00 38.89 3.71
3123 3411 0.030773 GCGACGATGATAGGCACTCA 59.969 55.000 0.00 0.00 41.75 3.41
3214 3505 4.378666 GCTTCGATAGTCGGATCTTCCTAC 60.379 50.000 0.00 0.00 40.88 3.18
3215 3506 3.752222 GCTTCGATAGTCGGATCTTCCTA 59.248 47.826 0.00 0.00 40.88 2.94
3247 3538 1.480137 CATCGAGAGGAGCTTGAGGTT 59.520 52.381 0.00 0.00 40.34 3.50
3293 3584 2.361104 GGCCGTTCCAAGGATGCA 60.361 61.111 0.00 0.00 34.01 3.96
3329 3621 1.678728 GGTGGATGGCGTCATCTTTGA 60.679 52.381 27.71 8.48 46.70 2.69
3331 3623 0.744414 CGGTGGATGGCGTCATCTTT 60.744 55.000 27.71 0.00 46.70 2.52
3403 3720 1.821332 GGAGATGGAGGCGCCTTTG 60.821 63.158 33.34 0.00 37.63 2.77
3404 3721 2.592308 GGAGATGGAGGCGCCTTT 59.408 61.111 33.34 18.99 37.63 3.11
3571 3888 1.310933 GGTAGTCGAGCTTCACCGGA 61.311 60.000 9.46 0.00 0.00 5.14
3710 4043 2.203294 GTGCACCAAGGTTCCGGT 60.203 61.111 5.22 0.00 35.27 5.28
3738 4071 2.220586 TTGGGTCGACCTGATGGCA 61.221 57.895 32.52 18.64 41.11 4.92
3775 6354 2.124570 CTGGCAAGATCCGGGTGG 60.125 66.667 0.00 0.00 0.00 4.61
3811 6390 2.757894 AGTGATAGGTGTCCTCCGAT 57.242 50.000 0.00 0.00 34.61 4.18
3916 6506 2.771943 CCTACTCCATAAGTGGCAAGGA 59.228 50.000 0.00 0.00 45.63 3.36
3920 6510 1.274184 ACCCCTACTCCATAAGTGGCA 60.274 52.381 0.00 0.00 45.63 4.92
3929 6519 2.118732 TGACGCACCCCTACTCCA 59.881 61.111 0.00 0.00 0.00 3.86
4091 6681 5.585047 ACGCTCAGGATCCATAAGTAAAAAC 59.415 40.000 15.82 0.00 0.00 2.43
4168 6758 0.185901 ATTGGTGTGTGAGGCCAGTT 59.814 50.000 5.01 0.00 33.41 3.16
4204 6794 4.941873 GTGGGATTTCTTCCGAACAAGTAT 59.058 41.667 0.00 0.00 46.52 2.12
4205 6795 4.202377 TGTGGGATTTCTTCCGAACAAGTA 60.202 41.667 0.00 0.00 46.52 2.24
4206 6796 3.146847 GTGGGATTTCTTCCGAACAAGT 58.853 45.455 0.00 0.00 46.52 3.16
4207 6797 3.146066 TGTGGGATTTCTTCCGAACAAG 58.854 45.455 0.00 0.00 46.52 3.16
4214 9437 7.666623 TGATTAACTTTTGTGGGATTTCTTCC 58.333 34.615 0.00 0.00 44.62 3.46
4253 9476 4.333649 CCATCTGGCATACACACTGTTAAG 59.666 45.833 0.00 0.00 0.00 1.85
4609 9834 7.539034 AACCCAATATTCTTTGTGCTAAACT 57.461 32.000 0.00 0.00 0.00 2.66
4710 9935 4.481930 TTTTAACTTGTCCATGCTCGTG 57.518 40.909 0.00 0.00 0.00 4.35
4711 9936 4.156008 GGATTTTAACTTGTCCATGCTCGT 59.844 41.667 0.00 0.00 0.00 4.18
4794 10019 3.520290 TGAACACAAGTATCGCCTAGG 57.480 47.619 3.67 3.67 0.00 3.02
4850 10075 5.925509 TGTGTTATAGAGGCCATTACTTCC 58.074 41.667 5.01 0.00 0.00 3.46
4869 10094 9.271828 GTCTATTTTGAAATTTCCCAAATGTGT 57.728 29.630 23.38 10.16 33.00 3.72
4910 10135 1.332997 GCCACTTGCATAGCTAGCTTG 59.667 52.381 24.88 20.22 40.77 4.01
4967 10193 4.751767 AAAACATTTCTGGTTGGCTTGA 57.248 36.364 0.00 0.00 30.96 3.02
5048 10274 8.499288 TTCCCTTTTAAATATTTGGGTGTTCT 57.501 30.769 16.87 0.00 36.23 3.01
5184 10412 8.789825 TTGAAATGGATTTTATCATGTTTGGG 57.210 30.769 0.00 0.00 0.00 4.12
5280 10512 4.104738 GGATCCTTCCTTGTATGATTCCCA 59.895 45.833 3.84 0.00 39.14 4.37
5281 10513 4.507512 GGGATCCTTCCTTGTATGATTCCC 60.508 50.000 12.58 0.00 42.20 3.97
5284 10516 5.937492 ATGGGATCCTTCCTTGTATGATT 57.063 39.130 12.58 0.00 42.20 2.57
5292 10524 7.713704 AACTTTATCTATGGGATCCTTCCTT 57.286 36.000 12.58 0.00 42.20 3.36
5334 10566 4.726416 CTGATGTGTGTCCAAAATGCTAC 58.274 43.478 0.00 0.00 0.00 3.58
5349 10581 1.452110 TCAATTCGGTGGCTGATGTG 58.548 50.000 0.00 0.00 0.00 3.21
5407 10640 1.681264 GACCCATTTTATTGGAGGCGG 59.319 52.381 0.00 0.00 39.25 6.13
5519 10753 3.359950 GGAATTCCTTGTGGAGATGCTT 58.640 45.455 17.73 0.00 44.24 3.91
5651 10896 4.344679 CCTTGTGGAGATGCTCTCTTCTAT 59.655 45.833 11.38 0.00 42.95 1.98
5712 10957 5.105513 ACCAGTGGTTTAGTTTTGGAACTTG 60.106 40.000 9.70 0.00 38.87 3.16
5734 10979 7.296628 ACATGAGATTCATAGAACTAGGACC 57.703 40.000 0.00 0.00 34.28 4.46
5802 11047 8.633561 CCCCAAACCAAATTGCTTTTATTAAAA 58.366 29.630 1.85 1.85 0.00 1.52
5812 11057 5.073008 ACTTATTTCCCCAAACCAAATTGCT 59.927 36.000 0.00 0.00 0.00 3.91
5816 11061 6.905736 ACAAACTTATTTCCCCAAACCAAAT 58.094 32.000 0.00 0.00 0.00 2.32
5817 11062 6.070194 TGACAAACTTATTTCCCCAAACCAAA 60.070 34.615 0.00 0.00 0.00 3.28
5843 11088 7.246171 TGACTTCTAGAGCTCCTGTTTTATT 57.754 36.000 10.93 0.00 0.00 1.40
5899 11144 5.063564 CAGGTTTCGTCCTATTAGTTTGAGC 59.936 44.000 0.00 0.00 35.87 4.26
5933 11178 7.093992 AGAGAAATCTAAGAAAGACTTGTCCG 58.906 38.462 0.00 0.00 35.05 4.79
5969 11214 7.275920 ACATACCACTTCCATCTGATAAAGAC 58.724 38.462 15.12 0.00 37.88 3.01
6011 11256 4.162131 ACAAACATGGCACTTCCTCTTTTT 59.838 37.500 0.00 0.00 35.26 1.94
6012 11257 3.706086 ACAAACATGGCACTTCCTCTTTT 59.294 39.130 0.00 0.00 35.26 2.27
6013 11258 3.299503 ACAAACATGGCACTTCCTCTTT 58.700 40.909 0.00 0.00 35.26 2.52
6014 11259 2.887152 GACAAACATGGCACTTCCTCTT 59.113 45.455 0.00 0.00 35.26 2.85
6015 11260 2.508526 GACAAACATGGCACTTCCTCT 58.491 47.619 0.00 0.00 35.26 3.69
6016 11261 1.541588 GGACAAACATGGCACTTCCTC 59.458 52.381 0.00 0.00 35.26 3.71
6017 11262 1.145738 AGGACAAACATGGCACTTCCT 59.854 47.619 0.00 0.00 35.26 3.36
6018 11263 1.620822 AGGACAAACATGGCACTTCC 58.379 50.000 0.00 0.00 0.00 3.46
6019 11264 4.846779 TTAAGGACAAACATGGCACTTC 57.153 40.909 0.00 0.00 0.00 3.01
6066 11320 5.107104 CGCTTGAGTTAATCAGCAAACTACA 60.107 40.000 5.38 0.00 39.68 2.74
6067 11321 5.107065 ACGCTTGAGTTAATCAGCAAACTAC 60.107 40.000 5.38 0.00 39.68 2.73
6089 11343 1.581934 TTCTGCAACAAGGAGTCACG 58.418 50.000 0.00 0.00 36.95 4.35
6090 11344 3.627577 TCTTTTCTGCAACAAGGAGTCAC 59.372 43.478 0.00 0.00 36.95 3.67
6238 11492 5.352569 GTCAATGGAAAATGACAGATCGACT 59.647 40.000 0.00 0.00 44.19 4.18
6249 11503 2.508867 CGTCTGCGTCAATGGAAAATG 58.491 47.619 0.00 0.00 0.00 2.32
6306 11560 2.818714 CGCCTGCAGCTCCTTCAG 60.819 66.667 8.66 0.00 40.39 3.02
6377 11631 2.673200 GGACATCTGGGCCAGCTGA 61.673 63.158 36.63 19.29 32.71 4.26
6524 11778 2.690778 GGGCTGCATGGTGACGAAC 61.691 63.158 0.50 0.00 0.00 3.95
6531 11785 2.036256 GTTCCAGGGCTGCATGGT 59.964 61.111 18.91 0.00 37.84 3.55
6695 11950 4.504461 CGTAAGAATCAATCAGAGGTTCGG 59.496 45.833 0.00 0.00 43.02 4.30
6717 11979 3.554692 GAGATTCGTGCCACCGCG 61.555 66.667 0.00 0.00 45.83 6.46
6820 12082 3.060615 CCTGGCTTGGTCTGCTGC 61.061 66.667 0.00 0.00 0.00 5.25
6830 12092 1.605738 CTTTGGAGCTGCCTGGCTT 60.606 57.895 21.03 5.39 43.20 4.35
6835 12097 0.990374 ATCACTCTTTGGAGCTGCCT 59.010 50.000 1.53 0.00 42.98 4.75
6944 12206 3.469899 TCATGTGCAATTGAGCGTAAC 57.530 42.857 10.34 0.00 37.31 2.50
6949 12211 3.302434 CGACAAATCATGTGCAATTGAGC 59.698 43.478 10.34 0.95 44.12 4.26
7146 12439 0.662619 ACGGTGACACAAACAGCATG 59.337 50.000 8.08 0.00 46.00 4.06
7164 12457 4.436998 CCCACCGGTCAGCGAGAC 62.437 72.222 2.59 4.03 46.83 3.36
7244 12537 2.222976 CGCAATGATTGACTGAGCTGAC 60.223 50.000 9.76 0.00 0.00 3.51
7245 12538 2.004733 CGCAATGATTGACTGAGCTGA 58.995 47.619 9.76 0.00 0.00 4.26
7246 12539 1.531264 GCGCAATGATTGACTGAGCTG 60.531 52.381 9.76 0.00 33.68 4.24
7247 12540 0.731417 GCGCAATGATTGACTGAGCT 59.269 50.000 9.76 0.00 33.68 4.09
7248 12541 0.448990 TGCGCAATGATTGACTGAGC 59.551 50.000 8.16 6.26 36.55 4.26
7249 12542 1.531264 GCTGCGCAATGATTGACTGAG 60.531 52.381 13.05 0.00 0.00 3.35
7367 12660 1.569479 GGGAAATATCTCTGCGGCGC 61.569 60.000 27.44 27.44 0.00 6.53
7468 12761 2.098770 CGCTCCCACTAACAGTACTACC 59.901 54.545 0.00 0.00 0.00 3.18
7489 12789 2.159234 CACTGTTGAAGCTAAGCAGAGC 59.841 50.000 16.80 1.75 43.19 4.09
7516 12819 3.310727 TGCACCGGAGCATATCATG 57.689 52.632 23.37 0.00 40.11 3.07
7549 12852 5.474876 GTGAATTCCATTATCATCTCCCACC 59.525 44.000 2.27 0.00 0.00 4.61
7552 12855 4.697352 CGGTGAATTCCATTATCATCTCCC 59.303 45.833 2.27 0.00 0.00 4.30
7595 12898 2.112297 TTCCAGTTGTGACCCGCC 59.888 61.111 0.00 0.00 0.00 6.13
7600 12903 4.272748 GTCTTTACCAGTTCCAGTTGTGAC 59.727 45.833 0.00 0.00 0.00 3.67
7637 13194 4.169696 TACCTCGCCAATGCCGGG 62.170 66.667 2.18 0.00 0.00 5.73
7639 13196 2.125310 TGTACCTCGCCAATGCCG 60.125 61.111 0.00 0.00 0.00 5.69
7641 13198 1.819632 CCCTGTACCTCGCCAATGC 60.820 63.158 0.00 0.00 0.00 3.56
7642 13199 0.828022 TACCCTGTACCTCGCCAATG 59.172 55.000 0.00 0.00 0.00 2.82
7643 13200 0.828677 GTACCCTGTACCTCGCCAAT 59.171 55.000 0.00 0.00 0.00 3.16
7645 13202 1.077086 TGTACCCTGTACCTCGCCA 59.923 57.895 2.22 0.00 0.00 5.69
7647 13204 0.822164 ATGTGTACCCTGTACCTCGC 59.178 55.000 2.22 0.00 0.00 5.03
7648 13205 1.065102 CGATGTGTACCCTGTACCTCG 59.935 57.143 2.22 4.87 0.00 4.63
7649 13206 1.202382 GCGATGTGTACCCTGTACCTC 60.202 57.143 2.22 0.00 0.00 3.85
7757 13319 1.235724 GACACCGGTCTTCTTTTGGG 58.764 55.000 2.59 0.00 40.99 4.12
7818 13380 4.424711 TCTGGGGTTGGCATCCGC 62.425 66.667 21.20 21.20 38.21 5.54
7830 13409 3.554342 ATAGGCTGGCGCTCTGGG 61.554 66.667 7.64 0.00 36.09 4.45
7844 13423 4.032900 CAGGGACGTCAAATCGAAACATAG 59.967 45.833 18.91 0.00 34.70 2.23
7870 13452 2.257409 ATCCGGCTGGGTGTGTGATC 62.257 60.000 12.87 0.00 37.00 2.92
7871 13453 2.257409 GATCCGGCTGGGTGTGTGAT 62.257 60.000 12.87 0.00 37.00 3.06
7872 13454 2.927856 ATCCGGCTGGGTGTGTGA 60.928 61.111 12.87 0.00 37.00 3.58
7885 13467 2.254703 GACCGATCCGATCCGATCCG 62.255 65.000 15.61 12.48 36.13 4.18
7950 13532 2.671619 GGCACCGCAAAGCTGGTA 60.672 61.111 0.00 0.00 34.79 3.25
7957 13539 1.298157 CTCAGAATCGGCACCGCAAA 61.298 55.000 3.66 0.00 39.59 3.68
8031 13618 4.129148 GATCCCCACCCCAGCACC 62.129 72.222 0.00 0.00 0.00 5.01
8057 13645 1.591863 GTTATCGTGGCTCCCTCGC 60.592 63.158 1.20 0.00 39.87 5.03
8070 13658 0.031721 CCCTGCCCGTACGAGTTATC 59.968 60.000 18.76 0.00 0.00 1.75
8111 13699 3.338126 CTGTACCGCGTCGCTTCCT 62.338 63.158 16.36 0.00 0.00 3.36
8112 13700 2.879462 CTGTACCGCGTCGCTTCC 60.879 66.667 16.36 0.99 0.00 3.46
8113 13701 2.588146 TAGCTGTACCGCGTCGCTTC 62.588 60.000 16.36 3.50 34.40 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.