Multiple sequence alignment - TraesCS1A01G212600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G212600 chr1A 100.000 3703 0 0 1 3703 375466613 375470315 0.000000e+00 6839.0
1 TraesCS1A01G212600 chr1A 85.588 340 40 4 2365 2704 375112664 375112334 7.610000e-92 348.0
2 TraesCS1A01G212600 chr1A 92.982 171 11 1 1 170 476908458 476908288 7.940000e-62 248.0
3 TraesCS1A01G212600 chr1A 80.178 338 58 4 2369 2706 374689986 374689658 1.030000e-60 244.0
4 TraesCS1A01G212600 chr1A 84.043 188 28 2 1679 1865 375113130 375112944 2.940000e-41 180.0
5 TraesCS1A01G212600 chr1A 88.136 59 6 1 1152 1210 374959678 374959621 6.640000e-08 69.4
6 TraesCS1A01G212600 chr1D 93.456 1467 52 18 865 2310 300858278 300859721 0.000000e+00 2137.0
7 TraesCS1A01G212600 chr1D 95.718 794 17 6 2312 3093 300859778 300860566 0.000000e+00 1262.0
8 TraesCS1A01G212600 chr1D 91.971 411 23 8 185 593 300857880 300858282 5.370000e-158 568.0
9 TraesCS1A01G212600 chr1D 91.206 398 22 10 3316 3703 300860815 300861209 2.530000e-146 529.0
10 TraesCS1A01G212600 chr1D 86.176 340 38 4 2365 2704 300718368 300718038 3.520000e-95 359.0
11 TraesCS1A01G212600 chr1D 80.952 336 55 4 2368 2703 300326114 300325788 1.320000e-64 257.0
12 TraesCS1A01G212600 chr1D 85.549 173 18 7 2 170 270036674 270036843 1.370000e-39 174.0
13 TraesCS1A01G212600 chr1D 83.598 189 28 3 1679 1865 300718826 300718639 1.370000e-39 174.0
14 TraesCS1A01G212600 chr1D 85.465 172 19 6 2 170 431797783 431797951 1.370000e-39 174.0
15 TraesCS1A01G212600 chr1B 91.450 1462 60 31 868 2312 406035689 406037102 0.000000e+00 1947.0
16 TraesCS1A01G212600 chr1B 88.000 1400 57 46 2355 3687 406037229 406038584 0.000000e+00 1552.0
17 TraesCS1A01G212600 chr1B 93.187 411 21 4 187 593 406035274 406035681 6.850000e-167 597.0
18 TraesCS1A01G212600 chr1B 97.857 280 6 0 589 868 373149760 373149481 5.560000e-133 484.0
19 TraesCS1A01G212600 chr1B 85.000 340 42 4 2365 2704 405905528 405905198 1.650000e-88 337.0
20 TraesCS1A01G212600 chr1B 79.651 344 59 6 2368 2710 405525353 405525020 1.720000e-58 237.0
21 TraesCS1A01G212600 chr1B 83.511 188 29 2 1679 1865 405905985 405905799 1.370000e-39 174.0
22 TraesCS1A01G212600 chr1B 87.931 58 7 0 1153 1210 405673617 405673560 6.640000e-08 69.4
23 TraesCS1A01G212600 chr1B 100.000 28 0 0 3676 3703 406038584 406038611 7.000000e-03 52.8
24 TraesCS1A01G212600 chr7A 98.246 285 5 0 586 870 460109694 460109410 1.990000e-137 499.0
25 TraesCS1A01G212600 chr2A 97.872 282 6 0 589 870 773800680 773800399 4.300000e-134 488.0
26 TraesCS1A01G212600 chr2A 86.782 174 21 2 2 173 650492320 650492493 3.770000e-45 193.0
27 TraesCS1A01G212600 chr7B 97.857 280 6 0 589 868 388157173 388157452 5.560000e-133 484.0
28 TraesCS1A01G212600 chr7B 97.213 287 6 2 584 869 503365307 503365592 5.560000e-133 484.0
29 TraesCS1A01G212600 chr7B 87.135 171 20 2 3 172 87120734 87120903 3.770000e-45 193.0
30 TraesCS1A01G212600 chr6B 97.857 280 6 0 589 868 680300796 680301075 5.560000e-133 484.0
31 TraesCS1A01G212600 chr2B 97.857 280 6 0 589 868 81318791 81319070 5.560000e-133 484.0
32 TraesCS1A01G212600 chr4B 96.552 290 8 2 579 868 396520527 396520240 2.590000e-131 479.0
33 TraesCS1A01G212600 chr4B 88.563 341 34 3 2365 2701 659329679 659329340 3.440000e-110 409.0
34 TraesCS1A01G212600 chr4B 87.027 185 24 0 1682 1866 659330285 659330101 3.750000e-50 209.0
35 TraesCS1A01G212600 chr3B 95.932 295 9 3 593 886 696324536 696324244 3.350000e-130 475.0
36 TraesCS1A01G212600 chr3B 86.250 160 20 2 1707 1865 766631768 766631926 4.920000e-39 172.0
37 TraesCS1A01G212600 chr5A 87.966 349 36 5 2359 2701 694760245 694760593 1.240000e-109 407.0
38 TraesCS1A01G212600 chr5A 86.458 192 26 0 1682 1873 694759648 694759839 1.040000e-50 211.0
39 TraesCS1A01G212600 chr5A 74.438 356 65 12 2365 2695 693673783 693673429 3.000000e-26 130.0
40 TraesCS1A01G212600 chr5A 98.000 50 1 0 3360 3409 37403663 37403712 1.830000e-13 87.9
41 TraesCS1A01G212600 chr4D 86.559 372 35 10 2355 2712 508501893 508502263 2.680000e-106 396.0
42 TraesCS1A01G212600 chr6D 93.529 170 10 1 1 169 84476331 84476162 6.140000e-63 252.0
43 TraesCS1A01G212600 chr7D 88.235 170 17 3 3 170 577854130 577853962 2.260000e-47 200.0
44 TraesCS1A01G212600 chr7D 84.884 172 21 3 2 172 158993234 158993401 6.360000e-38 169.0
45 TraesCS1A01G212600 chr3A 85.119 168 24 1 2 168 595281722 595281889 1.770000e-38 171.0
46 TraesCS1A01G212600 chr6A 86.842 152 18 2 1707 1857 399722494 399722644 6.360000e-38 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G212600 chr1A 375466613 375470315 3702 False 6839.0 6839 100.00000 1 3703 1 chr1A.!!$F1 3702
1 TraesCS1A01G212600 chr1A 375112334 375113130 796 True 264.0 348 84.81550 1679 2704 2 chr1A.!!$R4 1025
2 TraesCS1A01G212600 chr1D 300857880 300861209 3329 False 1124.0 2137 93.08775 185 3703 4 chr1D.!!$F3 3518
3 TraesCS1A01G212600 chr1D 300718038 300718826 788 True 266.5 359 84.88700 1679 2704 2 chr1D.!!$R2 1025
4 TraesCS1A01G212600 chr1B 406035274 406038611 3337 False 1037.2 1947 93.15925 187 3703 4 chr1B.!!$F1 3516
5 TraesCS1A01G212600 chr1B 405905198 405905985 787 True 255.5 337 84.25550 1679 2704 2 chr1B.!!$R4 1025
6 TraesCS1A01G212600 chr4B 659329340 659330285 945 True 309.0 409 87.79500 1682 2701 2 chr4B.!!$R2 1019
7 TraesCS1A01G212600 chr5A 694759648 694760593 945 False 309.0 407 87.21200 1682 2701 2 chr5A.!!$F2 1019

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
600 610 0.037326 CTCGTTGCTTAGGCTGGTCA 60.037 55.0 0.00 0.0 39.59 4.02 F
610 620 0.043334 AGGCTGGTCATAGTGGGAGT 59.957 55.0 0.00 0.0 0.00 3.85 F
1676 1713 0.161024 CGAAGCTGACGTTTCGTTCC 59.839 55.0 11.05 0.0 45.15 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1542 1576 0.530650 AGCGACTCAACACACACAGG 60.531 55.0 0.00 0.0 0.0 4.00 R
1983 2022 0.604511 ACTTTTAACTGCCCGGACGG 60.605 55.0 0.73 0.0 0.0 4.79 R
3247 3793 0.105964 GGCGCCAACTTTTTCCCTTT 59.894 50.0 24.80 0.0 0.0 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.355151 GGGTTTTCGCCCCATGAT 57.645 55.556 0.00 0.00 42.89 2.45
21 22 1.815866 GGGTTTTCGCCCCATGATG 59.184 57.895 0.00 0.00 42.89 3.07
22 23 0.682855 GGGTTTTCGCCCCATGATGA 60.683 55.000 0.00 0.00 42.89 2.92
23 24 1.181786 GGTTTTCGCCCCATGATGAA 58.818 50.000 0.00 0.00 0.00 2.57
24 25 1.135112 GGTTTTCGCCCCATGATGAAC 60.135 52.381 0.00 0.00 0.00 3.18
25 26 1.818674 GTTTTCGCCCCATGATGAACT 59.181 47.619 0.00 0.00 0.00 3.01
26 27 1.462616 TTTCGCCCCATGATGAACTG 58.537 50.000 0.00 0.00 0.00 3.16
27 28 0.327924 TTCGCCCCATGATGAACTGT 59.672 50.000 0.00 0.00 0.00 3.55
28 29 0.107703 TCGCCCCATGATGAACTGTC 60.108 55.000 0.00 0.00 0.00 3.51
29 30 0.107508 CGCCCCATGATGAACTGTCT 60.108 55.000 0.00 0.00 0.00 3.41
30 31 1.386533 GCCCCATGATGAACTGTCTG 58.613 55.000 0.00 0.00 0.00 3.51
31 32 1.340405 GCCCCATGATGAACTGTCTGT 60.340 52.381 0.00 0.00 0.00 3.41
32 33 2.881403 GCCCCATGATGAACTGTCTGTT 60.881 50.000 0.00 0.00 42.38 3.16
33 34 2.751259 CCCCATGATGAACTGTCTGTTG 59.249 50.000 0.00 0.00 39.30 3.33
34 35 3.559811 CCCCATGATGAACTGTCTGTTGA 60.560 47.826 0.00 0.00 39.30 3.18
35 36 3.438087 CCCATGATGAACTGTCTGTTGAC 59.562 47.826 0.00 0.00 43.20 3.18
36 37 3.124128 CCATGATGAACTGTCTGTTGACG 59.876 47.826 0.00 0.00 45.70 4.35
40 41 3.379650 AACTGTCTGTTGACGGGTG 57.620 52.632 9.42 0.00 46.83 4.61
41 42 0.539986 AACTGTCTGTTGACGGGTGT 59.460 50.000 9.42 0.00 46.83 4.16
42 43 1.065709 AACTGTCTGTTGACGGGTGTT 60.066 47.619 9.42 1.94 46.83 3.32
43 44 1.217882 CTGTCTGTTGACGGGTGTTC 58.782 55.000 0.00 0.00 45.70 3.18
44 45 0.528901 TGTCTGTTGACGGGTGTTCG 60.529 55.000 0.00 0.00 45.70 3.95
45 46 0.529119 GTCTGTTGACGGGTGTTCGT 60.529 55.000 0.00 0.00 46.83 3.85
51 52 3.218470 ACGGGTGTTCGTCGTGGA 61.218 61.111 0.00 0.00 39.34 4.02
52 53 2.260434 CGGGTGTTCGTCGTGGAT 59.740 61.111 0.00 0.00 0.00 3.41
53 54 1.373748 CGGGTGTTCGTCGTGGATT 60.374 57.895 0.00 0.00 0.00 3.01
54 55 0.947180 CGGGTGTTCGTCGTGGATTT 60.947 55.000 0.00 0.00 0.00 2.17
55 56 1.232119 GGGTGTTCGTCGTGGATTTT 58.768 50.000 0.00 0.00 0.00 1.82
56 57 1.196127 GGGTGTTCGTCGTGGATTTTC 59.804 52.381 0.00 0.00 0.00 2.29
57 58 1.196127 GGTGTTCGTCGTGGATTTTCC 59.804 52.381 0.00 0.00 36.96 3.13
58 59 1.868498 GTGTTCGTCGTGGATTTTCCA 59.132 47.619 0.00 0.00 45.98 3.53
69 70 4.524316 TGGATTTTCCAGTGATGCTTTG 57.476 40.909 0.00 0.00 42.67 2.77
70 71 4.151121 TGGATTTTCCAGTGATGCTTTGA 58.849 39.130 0.00 0.00 42.67 2.69
71 72 4.219070 TGGATTTTCCAGTGATGCTTTGAG 59.781 41.667 0.00 0.00 42.67 3.02
72 73 3.648339 TTTTCCAGTGATGCTTTGAGC 57.352 42.857 0.00 0.00 42.82 4.26
73 74 1.538047 TTCCAGTGATGCTTTGAGCC 58.462 50.000 0.00 0.00 41.51 4.70
74 75 0.322816 TCCAGTGATGCTTTGAGCCC 60.323 55.000 0.00 0.00 41.51 5.19
75 76 1.651240 CCAGTGATGCTTTGAGCCCG 61.651 60.000 0.00 0.00 41.51 6.13
76 77 2.042831 AGTGATGCTTTGAGCCCGC 61.043 57.895 0.00 0.00 41.51 6.13
77 78 2.042831 GTGATGCTTTGAGCCCGCT 61.043 57.895 0.00 0.00 41.51 5.52
78 79 1.303561 TGATGCTTTGAGCCCGCTT 60.304 52.632 0.00 0.00 41.51 4.68
79 80 1.308069 TGATGCTTTGAGCCCGCTTC 61.308 55.000 0.00 0.00 41.51 3.86
80 81 1.997928 GATGCTTTGAGCCCGCTTCC 61.998 60.000 0.00 0.00 41.51 3.46
81 82 3.443925 GCTTTGAGCCCGCTTCCC 61.444 66.667 0.00 0.00 34.48 3.97
82 83 2.751837 CTTTGAGCCCGCTTCCCC 60.752 66.667 0.00 0.00 0.00 4.81
83 84 3.256960 TTTGAGCCCGCTTCCCCT 61.257 61.111 0.00 0.00 0.00 4.79
84 85 2.771328 CTTTGAGCCCGCTTCCCCTT 62.771 60.000 0.00 0.00 0.00 3.95
85 86 2.366153 TTTGAGCCCGCTTCCCCTTT 62.366 55.000 0.00 0.00 0.00 3.11
86 87 2.438614 GAGCCCGCTTCCCCTTTC 60.439 66.667 0.00 0.00 0.00 2.62
87 88 2.936032 AGCCCGCTTCCCCTTTCT 60.936 61.111 0.00 0.00 0.00 2.52
88 89 1.615424 AGCCCGCTTCCCCTTTCTA 60.615 57.895 0.00 0.00 0.00 2.10
89 90 1.153147 GCCCGCTTCCCCTTTCTAG 60.153 63.158 0.00 0.00 0.00 2.43
90 91 1.527370 CCCGCTTCCCCTTTCTAGG 59.473 63.158 0.00 0.00 41.60 3.02
91 92 1.272554 CCCGCTTCCCCTTTCTAGGT 61.273 60.000 0.00 0.00 40.19 3.08
92 93 0.618981 CCGCTTCCCCTTTCTAGGTT 59.381 55.000 0.00 0.00 40.19 3.50
93 94 1.004394 CCGCTTCCCCTTTCTAGGTTT 59.996 52.381 0.00 0.00 40.19 3.27
94 95 2.357075 CGCTTCCCCTTTCTAGGTTTC 58.643 52.381 0.00 0.00 40.19 2.78
95 96 2.724454 GCTTCCCCTTTCTAGGTTTCC 58.276 52.381 0.00 0.00 40.19 3.13
96 97 2.309162 GCTTCCCCTTTCTAGGTTTCCT 59.691 50.000 0.00 0.00 40.19 3.36
97 98 3.874193 GCTTCCCCTTTCTAGGTTTCCTG 60.874 52.174 0.00 0.00 40.19 3.86
98 99 2.275466 TCCCCTTTCTAGGTTTCCTGG 58.725 52.381 0.00 0.00 40.19 4.45
99 100 1.285078 CCCCTTTCTAGGTTTCCTGGG 59.715 57.143 0.00 0.45 40.19 4.45
100 101 1.993301 CCCTTTCTAGGTTTCCTGGGT 59.007 52.381 0.00 0.00 40.19 4.51
101 102 2.290960 CCCTTTCTAGGTTTCCTGGGTG 60.291 54.545 0.00 0.00 40.19 4.61
102 103 2.290960 CCTTTCTAGGTTTCCTGGGTGG 60.291 54.545 0.00 0.00 36.74 4.61
103 104 2.127651 TTCTAGGTTTCCTGGGTGGT 57.872 50.000 0.00 0.00 34.61 4.16
104 105 1.652947 TCTAGGTTTCCTGGGTGGTC 58.347 55.000 0.00 0.00 34.61 4.02
105 106 1.132657 TCTAGGTTTCCTGGGTGGTCA 60.133 52.381 0.00 0.00 34.61 4.02
106 107 1.916181 CTAGGTTTCCTGGGTGGTCAT 59.084 52.381 0.00 0.00 34.61 3.06
107 108 0.405585 AGGTTTCCTGGGTGGTCATG 59.594 55.000 0.00 0.00 37.07 3.07
108 109 0.112412 GGTTTCCTGGGTGGTCATGT 59.888 55.000 0.00 0.00 37.07 3.21
109 110 1.480498 GGTTTCCTGGGTGGTCATGTT 60.480 52.381 0.00 0.00 37.07 2.71
110 111 1.613437 GTTTCCTGGGTGGTCATGTTG 59.387 52.381 0.00 0.00 37.07 3.33
111 112 1.144691 TTCCTGGGTGGTCATGTTGA 58.855 50.000 0.00 0.00 37.07 3.18
112 113 1.144691 TCCTGGGTGGTCATGTTGAA 58.855 50.000 0.00 0.00 37.07 2.69
113 114 1.202879 TCCTGGGTGGTCATGTTGAAC 60.203 52.381 0.00 0.00 33.88 3.18
114 115 1.202927 CCTGGGTGGTCATGTTGAACT 60.203 52.381 0.00 0.00 34.53 3.01
115 116 1.881973 CTGGGTGGTCATGTTGAACTG 59.118 52.381 0.00 0.00 34.53 3.16
116 117 1.492599 TGGGTGGTCATGTTGAACTGA 59.507 47.619 0.00 0.00 34.53 3.41
117 118 2.108075 TGGGTGGTCATGTTGAACTGAT 59.892 45.455 0.00 0.00 34.53 2.90
118 119 2.489329 GGGTGGTCATGTTGAACTGATG 59.511 50.000 0.00 0.00 34.53 3.07
119 120 3.149196 GGTGGTCATGTTGAACTGATGT 58.851 45.455 0.00 0.00 34.53 3.06
120 121 3.569701 GGTGGTCATGTTGAACTGATGTT 59.430 43.478 0.00 0.00 34.53 2.71
121 122 4.759693 GGTGGTCATGTTGAACTGATGTTA 59.240 41.667 0.00 0.00 34.53 2.41
122 123 5.415701 GGTGGTCATGTTGAACTGATGTTAT 59.584 40.000 0.00 0.00 34.53 1.89
123 124 6.071952 GGTGGTCATGTTGAACTGATGTTATT 60.072 38.462 0.00 0.00 34.53 1.40
124 125 7.370383 GTGGTCATGTTGAACTGATGTTATTT 58.630 34.615 0.00 0.00 34.53 1.40
125 126 7.538678 GTGGTCATGTTGAACTGATGTTATTTC 59.461 37.037 0.00 0.00 34.53 2.17
126 127 7.029563 GGTCATGTTGAACTGATGTTATTTCC 58.970 38.462 0.00 0.00 36.39 3.13
127 128 6.742718 GTCATGTTGAACTGATGTTATTTCCG 59.257 38.462 0.00 0.00 36.39 4.30
128 129 6.429692 TCATGTTGAACTGATGTTATTTCCGT 59.570 34.615 0.00 0.00 36.39 4.69
129 130 6.627395 TGTTGAACTGATGTTATTTCCGTT 57.373 33.333 0.00 0.00 36.39 4.44
130 131 7.731882 TGTTGAACTGATGTTATTTCCGTTA 57.268 32.000 0.00 0.00 36.39 3.18
131 132 8.330466 TGTTGAACTGATGTTATTTCCGTTAT 57.670 30.769 0.00 0.00 36.39 1.89
132 133 8.233868 TGTTGAACTGATGTTATTTCCGTTATG 58.766 33.333 0.00 0.00 36.39 1.90
133 134 8.447833 GTTGAACTGATGTTATTTCCGTTATGA 58.552 33.333 0.00 0.00 36.39 2.15
134 135 8.196802 TGAACTGATGTTATTTCCGTTATGAG 57.803 34.615 0.00 0.00 36.39 2.90
135 136 8.038351 TGAACTGATGTTATTTCCGTTATGAGA 58.962 33.333 0.00 0.00 36.39 3.27
136 137 8.425577 AACTGATGTTATTTCCGTTATGAGAG 57.574 34.615 0.00 0.00 34.15 3.20
137 138 7.556844 ACTGATGTTATTTCCGTTATGAGAGT 58.443 34.615 0.00 0.00 0.00 3.24
138 139 8.692710 ACTGATGTTATTTCCGTTATGAGAGTA 58.307 33.333 0.00 0.00 0.00 2.59
139 140 9.529325 CTGATGTTATTTCCGTTATGAGAGTAA 57.471 33.333 0.00 0.00 0.00 2.24
142 143 8.657074 TGTTATTTCCGTTATGAGAGTAATGG 57.343 34.615 0.00 0.00 40.54 3.16
143 144 8.479689 TGTTATTTCCGTTATGAGAGTAATGGA 58.520 33.333 4.01 4.01 44.20 3.41
147 148 5.914033 TCCGTTATGAGAGTAATGGAAAGG 58.086 41.667 5.39 0.00 43.39 3.11
148 149 5.057149 CCGTTATGAGAGTAATGGAAAGGG 58.943 45.833 0.00 0.00 41.32 3.95
149 150 5.396436 CCGTTATGAGAGTAATGGAAAGGGT 60.396 44.000 0.00 0.00 41.32 4.34
150 151 6.183360 CCGTTATGAGAGTAATGGAAAGGGTA 60.183 42.308 0.00 0.00 41.32 3.69
151 152 7.270047 CGTTATGAGAGTAATGGAAAGGGTAA 58.730 38.462 0.00 0.00 0.00 2.85
152 153 7.931948 CGTTATGAGAGTAATGGAAAGGGTAAT 59.068 37.037 0.00 0.00 0.00 1.89
153 154 9.057089 GTTATGAGAGTAATGGAAAGGGTAATG 57.943 37.037 0.00 0.00 0.00 1.90
154 155 5.437060 TGAGAGTAATGGAAAGGGTAATGC 58.563 41.667 0.00 0.00 0.00 3.56
155 156 4.793201 AGAGTAATGGAAAGGGTAATGCC 58.207 43.478 0.00 0.00 0.00 4.40
164 165 4.329831 GGTAATGCCCGGCTCAAA 57.670 55.556 11.61 0.00 0.00 2.69
165 166 2.573920 GGTAATGCCCGGCTCAAAA 58.426 52.632 11.61 0.00 0.00 2.44
166 167 0.892063 GGTAATGCCCGGCTCAAAAA 59.108 50.000 11.61 0.00 0.00 1.94
219 220 5.324409 AGCTGAAATGAAATGACCTTACCA 58.676 37.500 0.00 0.00 0.00 3.25
249 250 4.663334 GTTTTACTCCTGAAACCCTGGAT 58.337 43.478 0.00 0.00 41.31 3.41
329 330 2.035961 TGTTCCGCTATACTCTGCATCC 59.964 50.000 0.00 0.00 0.00 3.51
349 350 1.862806 GAGTCCTGTTGCGTTCTGC 59.137 57.895 0.00 0.00 46.70 4.26
351 352 0.679505 AGTCCTGTTGCGTTCTGCTA 59.320 50.000 0.00 0.00 46.63 3.49
352 353 1.071605 GTCCTGTTGCGTTCTGCTAG 58.928 55.000 0.00 0.00 46.63 3.42
373 374 5.344207 AGTATGCGTTTTTCTTCACTGAC 57.656 39.130 0.00 0.00 0.00 3.51
405 415 2.124529 GGCCTGACCTAAGCAGCC 60.125 66.667 0.00 0.00 34.51 4.85
407 417 1.225704 GCCTGACCTAAGCAGCCAT 59.774 57.895 0.00 0.00 32.06 4.40
408 418 1.099879 GCCTGACCTAAGCAGCCATG 61.100 60.000 0.00 0.00 32.06 3.66
409 419 0.465097 CCTGACCTAAGCAGCCATGG 60.465 60.000 7.63 7.63 32.06 3.66
410 420 1.077501 TGACCTAAGCAGCCATGGC 60.078 57.895 30.12 30.12 42.33 4.40
411 421 1.077501 GACCTAAGCAGCCATGGCA 60.078 57.895 37.18 16.43 44.88 4.92
412 422 1.077212 ACCTAAGCAGCCATGGCAG 60.077 57.895 37.18 30.66 44.88 4.85
470 480 1.401905 CTGCCACCTTTAATTCGCTCC 59.598 52.381 0.00 0.00 0.00 4.70
583 593 1.165270 CACAAACCCGAACCCATCTC 58.835 55.000 0.00 0.00 0.00 2.75
593 603 2.280628 GAACCCATCTCGTTGCTTAGG 58.719 52.381 0.00 0.00 0.00 2.69
594 604 0.107654 ACCCATCTCGTTGCTTAGGC 60.108 55.000 0.00 0.00 39.26 3.93
595 605 0.179000 CCCATCTCGTTGCTTAGGCT 59.821 55.000 0.00 0.00 39.59 4.58
596 606 1.293924 CCATCTCGTTGCTTAGGCTG 58.706 55.000 0.00 0.00 39.59 4.85
598 608 0.905357 ATCTCGTTGCTTAGGCTGGT 59.095 50.000 0.00 0.00 39.59 4.00
600 610 0.037326 CTCGTTGCTTAGGCTGGTCA 60.037 55.000 0.00 0.00 39.59 4.02
601 611 0.613260 TCGTTGCTTAGGCTGGTCAT 59.387 50.000 0.00 0.00 39.59 3.06
602 612 1.828595 TCGTTGCTTAGGCTGGTCATA 59.171 47.619 0.00 0.00 39.59 2.15
603 613 2.159099 TCGTTGCTTAGGCTGGTCATAG 60.159 50.000 0.00 0.00 39.59 2.23
604 614 2.418746 CGTTGCTTAGGCTGGTCATAGT 60.419 50.000 0.00 0.00 39.59 2.12
605 615 2.939103 GTTGCTTAGGCTGGTCATAGTG 59.061 50.000 0.00 0.00 39.59 2.74
606 616 1.486310 TGCTTAGGCTGGTCATAGTGG 59.514 52.381 0.00 0.00 39.59 4.00
607 617 1.202698 GCTTAGGCTGGTCATAGTGGG 60.203 57.143 0.00 0.00 35.22 4.61
608 618 2.398588 CTTAGGCTGGTCATAGTGGGA 58.601 52.381 0.00 0.00 0.00 4.37
609 619 2.088104 TAGGCTGGTCATAGTGGGAG 57.912 55.000 0.00 0.00 0.00 4.30
610 620 0.043334 AGGCTGGTCATAGTGGGAGT 59.957 55.000 0.00 0.00 0.00 3.85
611 621 1.291033 AGGCTGGTCATAGTGGGAGTA 59.709 52.381 0.00 0.00 0.00 2.59
612 622 2.116238 GGCTGGTCATAGTGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
613 623 2.706190 GGCTGGTCATAGTGGGAGTAAT 59.294 50.000 0.00 0.00 0.00 1.89
614 624 3.901844 GGCTGGTCATAGTGGGAGTAATA 59.098 47.826 0.00 0.00 0.00 0.98
615 625 4.532521 GGCTGGTCATAGTGGGAGTAATAT 59.467 45.833 0.00 0.00 0.00 1.28
616 626 5.720041 GGCTGGTCATAGTGGGAGTAATATA 59.280 44.000 0.00 0.00 0.00 0.86
617 627 6.127310 GGCTGGTCATAGTGGGAGTAATATAG 60.127 46.154 0.00 0.00 0.00 1.31
618 628 6.663953 GCTGGTCATAGTGGGAGTAATATAGA 59.336 42.308 0.00 0.00 0.00 1.98
619 629 7.343316 GCTGGTCATAGTGGGAGTAATATAGAT 59.657 40.741 0.00 0.00 0.00 1.98
620 630 9.922477 CTGGTCATAGTGGGAGTAATATAGATA 57.078 37.037 0.00 0.00 0.00 1.98
621 631 9.922477 TGGTCATAGTGGGAGTAATATAGATAG 57.078 37.037 0.00 0.00 0.00 2.08
622 632 9.924010 GGTCATAGTGGGAGTAATATAGATAGT 57.076 37.037 0.00 0.00 0.00 2.12
642 652 8.037758 AGATAGTAACATAGATGCCACATAAGC 58.962 37.037 0.00 0.00 0.00 3.09
643 653 5.928976 AGTAACATAGATGCCACATAAGCA 58.071 37.500 0.00 0.00 45.94 3.91
644 654 6.356556 AGTAACATAGATGCCACATAAGCAA 58.643 36.000 0.00 0.00 44.83 3.91
645 655 6.828273 AGTAACATAGATGCCACATAAGCAAA 59.172 34.615 0.00 0.00 44.83 3.68
646 656 6.528537 AACATAGATGCCACATAAGCAAAA 57.471 33.333 0.00 0.00 44.83 2.44
647 657 6.528537 ACATAGATGCCACATAAGCAAAAA 57.471 33.333 0.00 0.00 44.83 1.94
648 658 7.116075 ACATAGATGCCACATAAGCAAAAAT 57.884 32.000 0.00 0.00 44.83 1.82
649 659 6.982141 ACATAGATGCCACATAAGCAAAAATG 59.018 34.615 0.00 0.00 44.83 2.32
650 660 5.664294 AGATGCCACATAAGCAAAAATGA 57.336 34.783 0.00 0.00 44.83 2.57
651 661 6.229936 AGATGCCACATAAGCAAAAATGAT 57.770 33.333 0.00 0.00 44.83 2.45
652 662 6.046593 AGATGCCACATAAGCAAAAATGATG 58.953 36.000 0.00 0.00 44.83 3.07
653 663 5.402997 TGCCACATAAGCAAAAATGATGA 57.597 34.783 0.00 0.00 37.28 2.92
654 664 5.979993 TGCCACATAAGCAAAAATGATGAT 58.020 33.333 0.00 0.00 37.28 2.45
655 665 5.813157 TGCCACATAAGCAAAAATGATGATG 59.187 36.000 0.00 0.00 37.28 3.07
656 666 5.813672 GCCACATAAGCAAAAATGATGATGT 59.186 36.000 0.00 0.00 0.00 3.06
657 667 6.237996 GCCACATAAGCAAAAATGATGATGTG 60.238 38.462 14.69 14.69 41.53 3.21
658 668 7.229228 CACATAAGCAAAAATGATGATGTGG 57.771 36.000 14.08 0.34 39.34 4.17
659 669 5.813672 ACATAAGCAAAAATGATGATGTGGC 59.186 36.000 0.00 0.00 0.00 5.01
660 670 3.965379 AGCAAAAATGATGATGTGGCA 57.035 38.095 0.00 0.00 0.00 4.92
661 671 4.274602 AGCAAAAATGATGATGTGGCAA 57.725 36.364 0.00 0.00 0.00 4.52
662 672 4.250464 AGCAAAAATGATGATGTGGCAAG 58.750 39.130 0.00 0.00 0.00 4.01
663 673 3.998341 GCAAAAATGATGATGTGGCAAGT 59.002 39.130 0.00 0.00 0.00 3.16
664 674 5.047164 AGCAAAAATGATGATGTGGCAAGTA 60.047 36.000 0.00 0.00 0.00 2.24
665 675 5.290158 GCAAAAATGATGATGTGGCAAGTAG 59.710 40.000 0.00 0.00 0.00 2.57
666 676 6.392354 CAAAAATGATGATGTGGCAAGTAGT 58.608 36.000 0.00 0.00 0.00 2.73
667 677 6.594788 AAAATGATGATGTGGCAAGTAGTT 57.405 33.333 0.00 0.00 0.00 2.24
668 678 7.701539 AAAATGATGATGTGGCAAGTAGTTA 57.298 32.000 0.00 0.00 0.00 2.24
669 679 7.701539 AAATGATGATGTGGCAAGTAGTTAA 57.298 32.000 0.00 0.00 0.00 2.01
670 680 7.886629 AATGATGATGTGGCAAGTAGTTAAT 57.113 32.000 0.00 0.00 0.00 1.40
671 681 6.682423 TGATGATGTGGCAAGTAGTTAATG 57.318 37.500 0.00 0.00 0.00 1.90
672 682 6.413892 TGATGATGTGGCAAGTAGTTAATGA 58.586 36.000 0.00 0.00 0.00 2.57
673 683 6.539826 TGATGATGTGGCAAGTAGTTAATGAG 59.460 38.462 0.00 0.00 0.00 2.90
674 684 5.185454 TGATGTGGCAAGTAGTTAATGAGG 58.815 41.667 0.00 0.00 0.00 3.86
675 685 4.901197 TGTGGCAAGTAGTTAATGAGGA 57.099 40.909 0.00 0.00 0.00 3.71
676 686 4.832248 TGTGGCAAGTAGTTAATGAGGAG 58.168 43.478 0.00 0.00 0.00 3.69
677 687 4.530553 TGTGGCAAGTAGTTAATGAGGAGA 59.469 41.667 0.00 0.00 0.00 3.71
678 688 5.112686 GTGGCAAGTAGTTAATGAGGAGAG 58.887 45.833 0.00 0.00 0.00 3.20
679 689 5.023452 TGGCAAGTAGTTAATGAGGAGAGA 58.977 41.667 0.00 0.00 0.00 3.10
680 690 5.127845 TGGCAAGTAGTTAATGAGGAGAGAG 59.872 44.000 0.00 0.00 0.00 3.20
681 691 5.452636 GGCAAGTAGTTAATGAGGAGAGAGG 60.453 48.000 0.00 0.00 0.00 3.69
682 692 5.596845 CAAGTAGTTAATGAGGAGAGAGGC 58.403 45.833 0.00 0.00 0.00 4.70
683 693 4.873010 AGTAGTTAATGAGGAGAGAGGCA 58.127 43.478 0.00 0.00 0.00 4.75
684 694 5.273208 AGTAGTTAATGAGGAGAGAGGCAA 58.727 41.667 0.00 0.00 0.00 4.52
685 695 5.721960 AGTAGTTAATGAGGAGAGAGGCAAA 59.278 40.000 0.00 0.00 0.00 3.68
686 696 5.707066 AGTTAATGAGGAGAGAGGCAAAT 57.293 39.130 0.00 0.00 0.00 2.32
687 697 6.814954 AGTTAATGAGGAGAGAGGCAAATA 57.185 37.500 0.00 0.00 0.00 1.40
688 698 6.825610 AGTTAATGAGGAGAGAGGCAAATAG 58.174 40.000 0.00 0.00 0.00 1.73
689 699 6.613271 AGTTAATGAGGAGAGAGGCAAATAGA 59.387 38.462 0.00 0.00 0.00 1.98
690 700 5.549742 AATGAGGAGAGAGGCAAATAGAG 57.450 43.478 0.00 0.00 0.00 2.43
691 701 3.987745 TGAGGAGAGAGGCAAATAGAGT 58.012 45.455 0.00 0.00 0.00 3.24
692 702 5.130705 TGAGGAGAGAGGCAAATAGAGTA 57.869 43.478 0.00 0.00 0.00 2.59
693 703 5.519808 TGAGGAGAGAGGCAAATAGAGTAA 58.480 41.667 0.00 0.00 0.00 2.24
694 704 5.361285 TGAGGAGAGAGGCAAATAGAGTAAC 59.639 44.000 0.00 0.00 0.00 2.50
695 705 5.273208 AGGAGAGAGGCAAATAGAGTAACA 58.727 41.667 0.00 0.00 0.00 2.41
696 706 5.902431 AGGAGAGAGGCAAATAGAGTAACAT 59.098 40.000 0.00 0.00 0.00 2.71
697 707 7.069986 AGGAGAGAGGCAAATAGAGTAACATA 58.930 38.462 0.00 0.00 0.00 2.29
698 708 7.565398 AGGAGAGAGGCAAATAGAGTAACATAA 59.435 37.037 0.00 0.00 0.00 1.90
699 709 8.371699 GGAGAGAGGCAAATAGAGTAACATAAT 58.628 37.037 0.00 0.00 0.00 1.28
718 728 8.479313 ACATAATATGTTACCATCACATAGCG 57.521 34.615 0.00 0.00 41.63 4.26
719 729 7.549134 ACATAATATGTTACCATCACATAGCGG 59.451 37.037 0.00 0.00 41.63 5.52
720 730 3.838244 ATGTTACCATCACATAGCGGT 57.162 42.857 0.00 0.00 32.88 5.68
721 731 3.620427 TGTTACCATCACATAGCGGTT 57.380 42.857 0.00 0.00 32.81 4.44
722 732 3.945346 TGTTACCATCACATAGCGGTTT 58.055 40.909 0.00 0.00 32.81 3.27
723 733 3.936453 TGTTACCATCACATAGCGGTTTC 59.064 43.478 0.00 0.00 32.81 2.78
724 734 2.038387 ACCATCACATAGCGGTTTCC 57.962 50.000 0.00 0.00 0.00 3.13
725 735 1.280710 ACCATCACATAGCGGTTTCCA 59.719 47.619 0.00 0.00 0.00 3.53
726 736 2.290641 ACCATCACATAGCGGTTTCCAA 60.291 45.455 0.00 0.00 0.00 3.53
727 737 2.951642 CCATCACATAGCGGTTTCCAAT 59.048 45.455 0.00 0.00 0.00 3.16
728 738 3.243168 CCATCACATAGCGGTTTCCAATG 60.243 47.826 0.00 0.00 0.00 2.82
729 739 1.742831 TCACATAGCGGTTTCCAATGC 59.257 47.619 0.00 0.00 0.00 3.56
730 740 1.472082 CACATAGCGGTTTCCAATGCA 59.528 47.619 0.00 0.00 0.00 3.96
731 741 2.099592 CACATAGCGGTTTCCAATGCAT 59.900 45.455 0.00 0.00 0.00 3.96
732 742 3.314913 CACATAGCGGTTTCCAATGCATA 59.685 43.478 0.00 0.00 0.00 3.14
733 743 3.951037 ACATAGCGGTTTCCAATGCATAA 59.049 39.130 0.00 0.00 0.00 1.90
734 744 4.584325 ACATAGCGGTTTCCAATGCATAAT 59.416 37.500 0.00 0.00 0.00 1.28
735 745 3.441496 AGCGGTTTCCAATGCATAATG 57.559 42.857 0.00 0.00 0.00 1.90
736 746 3.023119 AGCGGTTTCCAATGCATAATGA 58.977 40.909 0.00 0.00 0.00 2.57
737 747 3.067180 AGCGGTTTCCAATGCATAATGAG 59.933 43.478 0.00 0.00 0.00 2.90
738 748 3.181487 GCGGTTTCCAATGCATAATGAGT 60.181 43.478 0.00 0.00 0.00 3.41
739 749 4.601019 CGGTTTCCAATGCATAATGAGTC 58.399 43.478 0.00 0.00 0.00 3.36
740 750 4.336433 CGGTTTCCAATGCATAATGAGTCT 59.664 41.667 0.00 0.00 0.00 3.24
741 751 5.527214 CGGTTTCCAATGCATAATGAGTCTA 59.473 40.000 0.00 0.00 0.00 2.59
742 752 6.511767 CGGTTTCCAATGCATAATGAGTCTAC 60.512 42.308 0.00 0.00 0.00 2.59
743 753 6.318648 GGTTTCCAATGCATAATGAGTCTACA 59.681 38.462 0.00 0.00 0.00 2.74
744 754 7.148086 GGTTTCCAATGCATAATGAGTCTACAA 60.148 37.037 0.00 0.00 0.00 2.41
745 755 7.936496 TTCCAATGCATAATGAGTCTACAAA 57.064 32.000 0.00 0.00 0.00 2.83
746 756 7.558161 TCCAATGCATAATGAGTCTACAAAG 57.442 36.000 0.00 0.00 0.00 2.77
747 757 7.112122 TCCAATGCATAATGAGTCTACAAAGT 58.888 34.615 0.00 0.00 0.00 2.66
748 758 8.264347 TCCAATGCATAATGAGTCTACAAAGTA 58.736 33.333 0.00 0.00 0.00 2.24
749 759 8.892723 CCAATGCATAATGAGTCTACAAAGTAA 58.107 33.333 0.00 0.00 0.00 2.24
760 770 9.162764 TGAGTCTACAAAGTAATAAATGAAGGC 57.837 33.333 0.00 0.00 0.00 4.35
761 771 9.162764 GAGTCTACAAAGTAATAAATGAAGGCA 57.837 33.333 0.00 0.00 0.00 4.75
762 772 9.515226 AGTCTACAAAGTAATAAATGAAGGCAA 57.485 29.630 0.00 0.00 0.00 4.52
763 773 9.556030 GTCTACAAAGTAATAAATGAAGGCAAC 57.444 33.333 0.00 0.00 0.00 4.17
781 791 6.545504 GGCAACTATGTTACCACATCTATG 57.454 41.667 0.00 0.00 43.06 2.23
782 792 6.288294 GGCAACTATGTTACCACATCTATGA 58.712 40.000 0.00 0.00 43.06 2.15
783 793 6.202954 GGCAACTATGTTACCACATCTATGAC 59.797 42.308 0.00 0.00 43.06 3.06
784 794 6.761242 GCAACTATGTTACCACATCTATGACA 59.239 38.462 0.00 0.00 43.06 3.58
785 795 7.254455 GCAACTATGTTACCACATCTATGACAC 60.254 40.741 0.00 0.00 43.06 3.67
786 796 7.661536 ACTATGTTACCACATCTATGACACT 57.338 36.000 0.00 0.00 43.06 3.55
787 797 8.762481 ACTATGTTACCACATCTATGACACTA 57.238 34.615 0.00 0.00 43.06 2.74
788 798 9.368416 ACTATGTTACCACATCTATGACACTAT 57.632 33.333 0.00 0.00 43.06 2.12
789 799 9.847706 CTATGTTACCACATCTATGACACTATC 57.152 37.037 0.00 0.00 43.06 2.08
790 800 7.050970 TGTTACCACATCTATGACACTATCC 57.949 40.000 0.00 0.00 0.00 2.59
791 801 6.609616 TGTTACCACATCTATGACACTATCCA 59.390 38.462 0.00 0.00 0.00 3.41
792 802 5.537300 ACCACATCTATGACACTATCCAC 57.463 43.478 0.00 0.00 0.00 4.02
793 803 5.211973 ACCACATCTATGACACTATCCACT 58.788 41.667 0.00 0.00 0.00 4.00
794 804 6.373759 ACCACATCTATGACACTATCCACTA 58.626 40.000 0.00 0.00 0.00 2.74
795 805 7.013220 ACCACATCTATGACACTATCCACTAT 58.987 38.462 0.00 0.00 0.00 2.12
796 806 7.039434 ACCACATCTATGACACTATCCACTATG 60.039 40.741 0.00 0.00 0.00 2.23
797 807 7.177392 CCACATCTATGACACTATCCACTATGA 59.823 40.741 0.00 0.00 0.00 2.15
798 808 8.579863 CACATCTATGACACTATCCACTATGAA 58.420 37.037 0.00 0.00 0.00 2.57
799 809 8.801299 ACATCTATGACACTATCCACTATGAAG 58.199 37.037 0.00 0.00 0.00 3.02
800 810 7.767250 TCTATGACACTATCCACTATGAAGG 57.233 40.000 0.00 0.00 0.00 3.46
801 811 7.298374 TCTATGACACTATCCACTATGAAGGT 58.702 38.462 0.00 0.00 0.00 3.50
802 812 8.445588 TCTATGACACTATCCACTATGAAGGTA 58.554 37.037 0.00 0.00 0.00 3.08
803 813 6.961360 TGACACTATCCACTATGAAGGTAG 57.039 41.667 0.00 0.00 0.00 3.18
804 814 6.432581 TGACACTATCCACTATGAAGGTAGT 58.567 40.000 0.00 0.00 35.34 2.73
805 815 7.580007 TGACACTATCCACTATGAAGGTAGTA 58.420 38.462 0.00 0.00 33.29 1.82
806 816 8.057011 TGACACTATCCACTATGAAGGTAGTAA 58.943 37.037 0.00 0.00 33.29 2.24
807 817 8.235359 ACACTATCCACTATGAAGGTAGTAAC 57.765 38.462 0.00 0.00 33.29 2.50
808 818 7.837689 ACACTATCCACTATGAAGGTAGTAACA 59.162 37.037 0.00 0.00 33.29 2.41
809 819 8.861086 CACTATCCACTATGAAGGTAGTAACAT 58.139 37.037 0.00 0.00 33.29 2.71
813 823 8.461249 TCCACTATGAAGGTAGTAACATAGAC 57.539 38.462 16.37 0.00 42.41 2.59
814 824 8.280084 TCCACTATGAAGGTAGTAACATAGACT 58.720 37.037 16.37 0.00 42.41 3.24
815 825 9.570468 CCACTATGAAGGTAGTAACATAGACTA 57.430 37.037 16.37 0.00 42.41 2.59
821 831 9.964354 TGAAGGTAGTAACATAGACTAGTAACA 57.036 33.333 0.00 0.00 30.08 2.41
853 863 7.894753 ATTACTAGTCTAACTTACTCCCCAC 57.105 40.000 0.00 0.00 0.00 4.61
854 864 5.533333 ACTAGTCTAACTTACTCCCCACT 57.467 43.478 0.00 0.00 0.00 4.00
855 865 6.649041 ACTAGTCTAACTTACTCCCCACTA 57.351 41.667 0.00 0.00 0.00 2.74
856 866 7.223472 ACTAGTCTAACTTACTCCCCACTAT 57.777 40.000 0.00 0.00 0.00 2.12
857 867 7.061688 ACTAGTCTAACTTACTCCCCACTATG 58.938 42.308 0.00 0.00 0.00 2.23
858 868 6.088541 AGTCTAACTTACTCCCCACTATGA 57.911 41.667 0.00 0.00 0.00 2.15
859 869 5.892686 AGTCTAACTTACTCCCCACTATGAC 59.107 44.000 0.00 0.00 0.00 3.06
860 870 5.068855 GTCTAACTTACTCCCCACTATGACC 59.931 48.000 0.00 0.00 0.00 4.02
861 871 3.484953 ACTTACTCCCCACTATGACCA 57.515 47.619 0.00 0.00 0.00 4.02
862 872 3.375699 ACTTACTCCCCACTATGACCAG 58.624 50.000 0.00 0.00 0.00 4.00
863 873 1.789523 TACTCCCCACTATGACCAGC 58.210 55.000 0.00 0.00 0.00 4.85
951 961 2.514824 GAACCGAGCAGGCCATCC 60.515 66.667 5.01 0.00 46.52 3.51
983 993 1.517257 GCCACTCGTCAGATCCACG 60.517 63.158 8.23 8.23 38.67 4.94
1048 1067 2.748843 GCGCTTCTCTGCTGCTTCC 61.749 63.158 0.00 0.00 32.72 3.46
1049 1068 1.079266 CGCTTCTCTGCTGCTTCCT 60.079 57.895 0.00 0.00 0.00 3.36
1050 1069 1.360194 CGCTTCTCTGCTGCTTCCTG 61.360 60.000 0.00 0.00 0.00 3.86
1051 1070 1.025647 GCTTCTCTGCTGCTTCCTGG 61.026 60.000 0.00 0.00 0.00 4.45
1052 1071 1.002868 TTCTCTGCTGCTTCCTGGC 60.003 57.895 0.00 0.00 0.00 4.85
1053 1072 2.438075 CTCTGCTGCTTCCTGGCC 60.438 66.667 0.00 0.00 0.00 5.36
1054 1073 4.399395 TCTGCTGCTTCCTGGCCG 62.399 66.667 0.00 0.00 0.00 6.13
1055 1074 4.711949 CTGCTGCTTCCTGGCCGT 62.712 66.667 0.00 0.00 0.00 5.68
1242 1261 3.700350 CACCCCCTCCCTCCCTCT 61.700 72.222 0.00 0.00 0.00 3.69
1246 1265 2.018086 CCCCTCCCTCCCTCTCTCT 61.018 68.421 0.00 0.00 0.00 3.10
1261 1280 4.141665 CCTCTCTCTGGATGAATGCTTCTT 60.142 45.833 0.00 0.00 0.00 2.52
1410 1429 1.072505 GTTCAAGGACGGCAAGGGA 59.927 57.895 0.00 0.00 0.00 4.20
1436 1455 5.621329 GCGGTTCATGCTACAAGGTAAATTT 60.621 40.000 0.00 0.00 0.00 1.82
1489 1523 1.207329 ACTGTCAAACTAGGCCGATCC 59.793 52.381 0.00 0.00 0.00 3.36
1490 1524 0.539986 TGTCAAACTAGGCCGATCCC 59.460 55.000 0.00 0.00 34.51 3.85
1537 1571 4.306600 TGCGCATAGTAATGTATCTGTGG 58.693 43.478 5.66 0.00 35.38 4.17
1540 1574 4.262463 CGCATAGTAATGTATCTGTGGGGT 60.262 45.833 0.00 0.00 35.38 4.95
1542 1576 3.560636 AGTAATGTATCTGTGGGGTGC 57.439 47.619 0.00 0.00 0.00 5.01
1543 1577 2.172717 AGTAATGTATCTGTGGGGTGCC 59.827 50.000 0.00 0.00 0.00 5.01
1657 1693 3.672295 CTCTCCGGTGCCTGAAGCC 62.672 68.421 0.00 0.00 42.71 4.35
1676 1713 0.161024 CGAAGCTGACGTTTCGTTCC 59.839 55.000 11.05 0.00 45.15 3.62
1791 1828 3.288308 CTTCGACCTCAGCGGCACT 62.288 63.158 1.45 0.00 35.61 4.40
1876 1913 3.928727 TCGAGTTCACACGGTAAGAAT 57.071 42.857 0.00 0.00 0.00 2.40
1877 1914 4.247267 TCGAGTTCACACGGTAAGAATT 57.753 40.909 0.00 0.00 0.00 2.17
1878 1915 5.375417 TCGAGTTCACACGGTAAGAATTA 57.625 39.130 0.00 0.00 0.00 1.40
1879 1916 5.396484 TCGAGTTCACACGGTAAGAATTAG 58.604 41.667 0.00 0.00 0.00 1.73
1880 1917 4.031426 CGAGTTCACACGGTAAGAATTAGC 59.969 45.833 0.00 0.00 45.10 3.09
1932 1971 3.402110 CAGTACCAGTGCAACATTGAGA 58.598 45.455 0.00 0.00 41.43 3.27
1933 1972 3.814842 CAGTACCAGTGCAACATTGAGAA 59.185 43.478 0.00 0.00 41.43 2.87
1934 1973 4.456911 CAGTACCAGTGCAACATTGAGAAT 59.543 41.667 0.00 0.00 41.43 2.40
1935 1974 5.643348 CAGTACCAGTGCAACATTGAGAATA 59.357 40.000 0.00 0.00 41.43 1.75
1939 1978 7.701539 ACCAGTGCAACATTGAGAATAAATA 57.298 32.000 0.00 0.00 41.43 1.40
1983 2022 3.068024 TCTTGGTTGAATTTGCTGTCCAC 59.932 43.478 0.00 0.00 0.00 4.02
2004 2044 1.069500 CGTCCGGGCAGTTAAAAGTTG 60.069 52.381 6.96 0.00 0.00 3.16
2099 2213 2.106074 CGCCACACACACACACACT 61.106 57.895 0.00 0.00 0.00 3.55
2115 2229 1.305718 ACTCACTCTCCTCTGCCCC 60.306 63.158 0.00 0.00 0.00 5.80
2315 2675 1.583054 ATATTCCGCCGCAAGAACTC 58.417 50.000 0.00 0.00 43.02 3.01
2779 3242 0.311165 ACGGTCAAGTGAGTCAGTCG 59.689 55.000 0.00 3.18 0.00 4.18
2894 3398 2.852075 GGGTGTGGGTCTGGGTCA 60.852 66.667 0.00 0.00 0.00 4.02
3093 3602 6.569179 TGTTTATACTTGTGCCTCCTTTTC 57.431 37.500 0.00 0.00 0.00 2.29
3094 3603 5.475564 TGTTTATACTTGTGCCTCCTTTTCC 59.524 40.000 0.00 0.00 0.00 3.13
3095 3604 5.514500 TTATACTTGTGCCTCCTTTTCCT 57.486 39.130 0.00 0.00 0.00 3.36
3096 3605 2.755952 ACTTGTGCCTCCTTTTCCTT 57.244 45.000 0.00 0.00 0.00 3.36
3097 3606 3.032265 ACTTGTGCCTCCTTTTCCTTT 57.968 42.857 0.00 0.00 0.00 3.11
3098 3607 3.374764 ACTTGTGCCTCCTTTTCCTTTT 58.625 40.909 0.00 0.00 0.00 2.27
3111 3620 8.415950 TCCTTTTCCTTTTATTATGCACTTCA 57.584 30.769 0.00 0.00 0.00 3.02
3114 3623 9.696917 CTTTTCCTTTTATTATGCACTTCAAGT 57.303 29.630 0.00 0.00 0.00 3.16
3123 3632 7.951530 ATTATGCACTTCAAGTTTCTTTTGG 57.048 32.000 0.00 0.00 0.00 3.28
3125 3634 4.743493 TGCACTTCAAGTTTCTTTTGGTC 58.257 39.130 0.00 0.00 0.00 4.02
3130 3639 8.349983 GCACTTCAAGTTTCTTTTGGTCTATTA 58.650 33.333 0.00 0.00 0.00 0.98
3133 3642 9.846248 CTTCAAGTTTCTTTTGGTCTATTATGG 57.154 33.333 0.00 0.00 0.00 2.74
3135 3644 9.362151 TCAAGTTTCTTTTGGTCTATTATGGTT 57.638 29.630 0.00 0.00 0.00 3.67
3140 3649 7.859325 TCTTTTGGTCTATTATGGTTACAGC 57.141 36.000 0.00 0.00 0.00 4.40
3146 3687 9.742144 TTGGTCTATTATGGTTACAGCTAAAAA 57.258 29.630 0.00 0.00 0.00 1.94
3150 3691 9.627123 TCTATTATGGTTACAGCTAAAAATGCT 57.373 29.630 0.00 0.00 42.06 3.79
3174 3715 8.642020 GCTGAAAAGCATAAAAATAGTTCAGTG 58.358 33.333 10.70 0.00 41.64 3.66
3179 3720 6.245408 AGCATAAAAATAGTTCAGTGTGGGA 58.755 36.000 0.00 0.00 0.00 4.37
3182 3723 8.034804 GCATAAAAATAGTTCAGTGTGGGAATT 58.965 33.333 0.00 0.00 0.00 2.17
3183 3724 9.927668 CATAAAAATAGTTCAGTGTGGGAATTT 57.072 29.630 0.00 0.00 0.00 1.82
3193 3734 6.851609 TCAGTGTGGGAATTTAATTTCATCG 58.148 36.000 11.18 0.00 0.00 3.84
3203 3746 7.591426 GGAATTTAATTTCATCGCATCCTACAC 59.409 37.037 11.18 0.00 0.00 2.90
3230 3776 1.549203 TAGTTCCGGGACAGTGTACC 58.451 55.000 17.22 15.31 32.04 3.34
3232 3778 0.611714 GTTCCGGGACAGTGTACCAT 59.388 55.000 24.59 0.00 36.00 3.55
3234 3780 0.251877 TCCGGGACAGTGTACCATGA 60.252 55.000 24.59 16.52 36.00 3.07
3247 3793 2.905415 ACCATGATCCAGCAAAAGGA 57.095 45.000 0.00 0.00 39.97 3.36
3248 3794 3.173953 ACCATGATCCAGCAAAAGGAA 57.826 42.857 0.00 0.00 38.93 3.36
3249 3795 3.509442 ACCATGATCCAGCAAAAGGAAA 58.491 40.909 0.00 0.00 38.93 3.13
3250 3796 3.512724 ACCATGATCCAGCAAAAGGAAAG 59.487 43.478 0.00 0.00 38.93 2.62
3251 3797 3.118884 CCATGATCCAGCAAAAGGAAAGG 60.119 47.826 0.00 0.00 38.93 3.11
3252 3798 2.528564 TGATCCAGCAAAAGGAAAGGG 58.471 47.619 0.00 0.00 38.93 3.95
3253 3799 2.109834 TGATCCAGCAAAAGGAAAGGGA 59.890 45.455 0.00 0.00 38.93 4.20
3254 3800 2.765689 TCCAGCAAAAGGAAAGGGAA 57.234 45.000 0.00 0.00 30.71 3.97
3280 3826 2.719774 GCGCCGTGCATTTGAAAGC 61.720 57.895 0.00 0.00 45.45 3.51
3281 3827 1.371512 CGCCGTGCATTTGAAAGCA 60.372 52.632 0.00 0.00 38.65 3.91
3333 3898 5.163540 TGCAAACCTTTTACCGCTTCTTTTA 60.164 36.000 0.00 0.00 0.00 1.52
3348 3913 5.620879 GCTTCTTTTACTGCAGATTCCTTGG 60.621 44.000 23.35 5.92 0.00 3.61
3436 4004 1.441729 CTGCGGCCCTCGATAAAGA 59.558 57.895 0.00 0.00 42.43 2.52
3464 4035 3.681593 TCCCCACCGTAGATTTTCTTTG 58.318 45.455 0.00 0.00 0.00 2.77
3495 4067 3.112709 GTCCTGCCAGTTCGACGC 61.113 66.667 0.00 0.00 0.00 5.19
3537 4109 1.152943 GCCGGAGAGAAATTCCCCC 60.153 63.158 5.05 0.00 0.00 5.40
3596 4168 2.292794 GATACAAGAGCGTCCGGCCA 62.293 60.000 2.24 0.00 45.17 5.36
3611 4183 2.554272 CCAAAACGAAGCGTCCCG 59.446 61.111 0.00 0.00 39.99 5.14
3668 4240 2.588146 TAGCTGTACCGCGTCGCTTC 62.588 60.000 16.36 3.50 34.40 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.135112 GTTCATCATGGGGCGAAAACC 60.135 52.381 0.00 0.00 0.00 3.27
5 6 1.818674 AGTTCATCATGGGGCGAAAAC 59.181 47.619 0.00 0.00 0.00 2.43
6 7 1.818060 CAGTTCATCATGGGGCGAAAA 59.182 47.619 0.00 0.00 0.00 2.29
7 8 1.271871 ACAGTTCATCATGGGGCGAAA 60.272 47.619 0.00 0.00 0.00 3.46
8 9 0.327924 ACAGTTCATCATGGGGCGAA 59.672 50.000 0.00 0.00 0.00 4.70
9 10 0.107703 GACAGTTCATCATGGGGCGA 60.108 55.000 0.00 0.00 0.00 5.54
10 11 0.107508 AGACAGTTCATCATGGGGCG 60.108 55.000 0.00 0.00 0.00 6.13
11 12 1.340405 ACAGACAGTTCATCATGGGGC 60.340 52.381 0.00 0.00 0.00 5.80
12 13 2.751259 CAACAGACAGTTCATCATGGGG 59.249 50.000 0.00 0.00 38.74 4.96
13 14 3.438087 GTCAACAGACAGTTCATCATGGG 59.562 47.826 0.00 0.00 38.74 4.00
14 15 3.124128 CGTCAACAGACAGTTCATCATGG 59.876 47.826 0.00 0.00 38.74 3.66
15 16 3.124128 CCGTCAACAGACAGTTCATCATG 59.876 47.826 0.00 0.00 38.74 3.07
16 17 3.329386 CCGTCAACAGACAGTTCATCAT 58.671 45.455 0.00 0.00 38.74 2.45
17 18 2.547855 CCCGTCAACAGACAGTTCATCA 60.548 50.000 0.00 0.00 38.74 3.07
18 19 2.069273 CCCGTCAACAGACAGTTCATC 58.931 52.381 0.00 0.00 38.74 2.92
19 20 1.416401 ACCCGTCAACAGACAGTTCAT 59.584 47.619 0.00 0.00 38.74 2.57
20 21 0.828022 ACCCGTCAACAGACAGTTCA 59.172 50.000 0.00 0.00 38.74 3.18
21 22 1.217882 CACCCGTCAACAGACAGTTC 58.782 55.000 0.00 0.00 38.74 3.01
22 23 0.539986 ACACCCGTCAACAGACAGTT 59.460 50.000 0.00 0.00 42.42 3.16
23 24 0.539986 AACACCCGTCAACAGACAGT 59.460 50.000 0.00 0.00 32.50 3.55
24 25 1.217882 GAACACCCGTCAACAGACAG 58.782 55.000 0.00 0.00 32.50 3.51
25 26 0.528901 CGAACACCCGTCAACAGACA 60.529 55.000 0.00 0.00 32.50 3.41
26 27 0.529119 ACGAACACCCGTCAACAGAC 60.529 55.000 0.00 0.00 38.56 3.51
27 28 1.817881 ACGAACACCCGTCAACAGA 59.182 52.632 0.00 0.00 38.56 3.41
28 29 4.431035 ACGAACACCCGTCAACAG 57.569 55.556 0.00 0.00 38.56 3.16
34 35 2.091102 AATCCACGACGAACACCCGT 62.091 55.000 0.00 0.00 46.43 5.28
35 36 0.947180 AAATCCACGACGAACACCCG 60.947 55.000 0.00 0.00 0.00 5.28
36 37 1.196127 GAAAATCCACGACGAACACCC 59.804 52.381 0.00 0.00 0.00 4.61
37 38 1.196127 GGAAAATCCACGACGAACACC 59.804 52.381 0.00 0.00 36.28 4.16
38 39 1.868498 TGGAAAATCCACGACGAACAC 59.132 47.619 0.00 0.00 42.67 3.32
39 40 2.139917 CTGGAAAATCCACGACGAACA 58.860 47.619 0.00 0.00 42.67 3.18
40 41 2.096417 CACTGGAAAATCCACGACGAAC 60.096 50.000 0.00 0.00 42.67 3.95
41 42 2.139917 CACTGGAAAATCCACGACGAA 58.860 47.619 0.00 0.00 42.67 3.85
42 43 1.341852 TCACTGGAAAATCCACGACGA 59.658 47.619 0.00 0.00 42.67 4.20
43 44 1.790755 TCACTGGAAAATCCACGACG 58.209 50.000 0.00 0.00 42.67 5.12
44 45 2.159517 GCATCACTGGAAAATCCACGAC 60.160 50.000 0.00 0.00 42.67 4.34
45 46 2.083774 GCATCACTGGAAAATCCACGA 58.916 47.619 0.00 0.00 42.67 4.35
46 47 2.086869 AGCATCACTGGAAAATCCACG 58.913 47.619 0.00 0.00 42.67 4.94
47 48 4.022068 TCAAAGCATCACTGGAAAATCCAC 60.022 41.667 0.00 0.00 42.67 4.02
48 49 4.151121 TCAAAGCATCACTGGAAAATCCA 58.849 39.130 0.00 0.00 45.98 3.41
49 50 4.741342 CTCAAAGCATCACTGGAAAATCC 58.259 43.478 0.00 0.00 36.96 3.01
50 51 4.171754 GCTCAAAGCATCACTGGAAAATC 58.828 43.478 0.00 0.00 41.89 2.17
51 52 3.056322 GGCTCAAAGCATCACTGGAAAAT 60.056 43.478 0.86 0.00 44.75 1.82
52 53 2.297033 GGCTCAAAGCATCACTGGAAAA 59.703 45.455 0.86 0.00 44.75 2.29
53 54 1.888512 GGCTCAAAGCATCACTGGAAA 59.111 47.619 0.86 0.00 44.75 3.13
54 55 1.538047 GGCTCAAAGCATCACTGGAA 58.462 50.000 0.86 0.00 44.75 3.53
55 56 0.322816 GGGCTCAAAGCATCACTGGA 60.323 55.000 0.86 0.00 44.75 3.86
56 57 1.651240 CGGGCTCAAAGCATCACTGG 61.651 60.000 0.86 0.00 44.75 4.00
57 58 1.798735 CGGGCTCAAAGCATCACTG 59.201 57.895 0.86 0.00 44.75 3.66
58 59 2.042831 GCGGGCTCAAAGCATCACT 61.043 57.895 0.86 0.00 44.75 3.41
59 60 1.589716 AAGCGGGCTCAAAGCATCAC 61.590 55.000 0.86 0.00 44.75 3.06
60 61 1.303561 AAGCGGGCTCAAAGCATCA 60.304 52.632 0.86 0.00 44.75 3.07
61 62 1.431036 GAAGCGGGCTCAAAGCATC 59.569 57.895 0.86 0.00 44.75 3.91
62 63 2.048603 GGAAGCGGGCTCAAAGCAT 61.049 57.895 0.86 0.00 44.75 3.79
63 64 2.672996 GGAAGCGGGCTCAAAGCA 60.673 61.111 0.86 0.00 44.75 3.91
64 65 3.443925 GGGAAGCGGGCTCAAAGC 61.444 66.667 0.00 0.00 41.46 3.51
65 66 2.751837 GGGGAAGCGGGCTCAAAG 60.752 66.667 0.00 0.00 0.00 2.77
66 67 2.366153 AAAGGGGAAGCGGGCTCAAA 62.366 55.000 0.00 0.00 0.00 2.69
67 68 2.764637 GAAAGGGGAAGCGGGCTCAA 62.765 60.000 0.00 0.00 0.00 3.02
68 69 3.256960 AAAGGGGAAGCGGGCTCA 61.257 61.111 0.00 0.00 0.00 4.26
69 70 1.623542 TAGAAAGGGGAAGCGGGCTC 61.624 60.000 0.00 0.00 0.00 4.70
70 71 1.615424 TAGAAAGGGGAAGCGGGCT 60.615 57.895 0.00 0.00 0.00 5.19
71 72 1.153147 CTAGAAAGGGGAAGCGGGC 60.153 63.158 0.00 0.00 0.00 6.13
72 73 1.527370 CCTAGAAAGGGGAAGCGGG 59.473 63.158 0.00 0.00 39.48 6.13
80 81 5.469757 CCACCCAGGAAACCTAGAAAGGG 62.470 56.522 8.12 8.12 43.80 3.95
81 82 2.290960 CCACCCAGGAAACCTAGAAAGG 60.291 54.545 0.00 0.00 44.65 3.11
82 83 2.375509 ACCACCCAGGAAACCTAGAAAG 59.624 50.000 0.00 0.00 41.22 2.62
83 84 2.374170 GACCACCCAGGAAACCTAGAAA 59.626 50.000 0.00 0.00 41.22 2.52
84 85 1.982958 GACCACCCAGGAAACCTAGAA 59.017 52.381 0.00 0.00 41.22 2.10
85 86 1.132657 TGACCACCCAGGAAACCTAGA 60.133 52.381 0.00 0.00 41.22 2.43
86 87 1.358152 TGACCACCCAGGAAACCTAG 58.642 55.000 0.00 0.00 41.22 3.02
87 88 1.633432 CATGACCACCCAGGAAACCTA 59.367 52.381 0.00 0.00 41.22 3.08
88 89 0.405585 CATGACCACCCAGGAAACCT 59.594 55.000 0.00 0.00 41.22 3.50
89 90 0.112412 ACATGACCACCCAGGAAACC 59.888 55.000 0.00 0.00 41.22 3.27
90 91 1.613437 CAACATGACCACCCAGGAAAC 59.387 52.381 0.00 0.00 41.22 2.78
91 92 1.496857 TCAACATGACCACCCAGGAAA 59.503 47.619 0.00 0.00 41.22 3.13
92 93 1.144691 TCAACATGACCACCCAGGAA 58.855 50.000 0.00 0.00 41.22 3.36
93 94 1.144691 TTCAACATGACCACCCAGGA 58.855 50.000 0.00 0.00 41.22 3.86
94 95 1.202927 AGTTCAACATGACCACCCAGG 60.203 52.381 0.00 0.00 45.67 4.45
95 96 1.881973 CAGTTCAACATGACCACCCAG 59.118 52.381 0.00 0.00 0.00 4.45
96 97 1.492599 TCAGTTCAACATGACCACCCA 59.507 47.619 0.00 0.00 0.00 4.51
97 98 2.270352 TCAGTTCAACATGACCACCC 57.730 50.000 0.00 0.00 0.00 4.61
98 99 3.149196 ACATCAGTTCAACATGACCACC 58.851 45.455 0.00 0.00 0.00 4.61
99 100 4.836125 AACATCAGTTCAACATGACCAC 57.164 40.909 0.00 0.00 30.46 4.16
100 101 7.309133 GGAAATAACATCAGTTCAACATGACCA 60.309 37.037 0.00 0.00 39.15 4.02
101 102 7.029563 GGAAATAACATCAGTTCAACATGACC 58.970 38.462 0.00 0.00 39.15 4.02
102 103 6.742718 CGGAAATAACATCAGTTCAACATGAC 59.257 38.462 0.00 0.00 39.15 3.06
103 104 6.429692 ACGGAAATAACATCAGTTCAACATGA 59.570 34.615 0.00 0.00 39.15 3.07
104 105 6.611381 ACGGAAATAACATCAGTTCAACATG 58.389 36.000 0.00 0.00 39.15 3.21
105 106 6.817765 ACGGAAATAACATCAGTTCAACAT 57.182 33.333 0.00 0.00 39.15 2.71
106 107 6.627395 AACGGAAATAACATCAGTTCAACA 57.373 33.333 0.00 0.00 39.15 3.33
107 108 8.447833 TCATAACGGAAATAACATCAGTTCAAC 58.552 33.333 0.00 0.00 39.15 3.18
108 109 8.554835 TCATAACGGAAATAACATCAGTTCAA 57.445 30.769 0.00 0.00 39.15 2.69
109 110 8.038351 TCTCATAACGGAAATAACATCAGTTCA 58.962 33.333 0.00 0.00 39.15 3.18
110 111 8.420374 TCTCATAACGGAAATAACATCAGTTC 57.580 34.615 0.00 0.00 39.15 3.01
111 112 8.041323 ACTCTCATAACGGAAATAACATCAGTT 58.959 33.333 0.00 0.00 41.74 3.16
112 113 7.556844 ACTCTCATAACGGAAATAACATCAGT 58.443 34.615 0.00 0.00 0.00 3.41
113 114 9.529325 TTACTCTCATAACGGAAATAACATCAG 57.471 33.333 0.00 0.00 0.00 2.90
116 117 9.273016 CCATTACTCTCATAACGGAAATAACAT 57.727 33.333 0.00 0.00 0.00 2.71
117 118 8.479689 TCCATTACTCTCATAACGGAAATAACA 58.520 33.333 0.00 0.00 0.00 2.41
118 119 8.882415 TCCATTACTCTCATAACGGAAATAAC 57.118 34.615 0.00 0.00 0.00 1.89
119 120 9.893634 TTTCCATTACTCTCATAACGGAAATAA 57.106 29.630 2.56 0.00 39.97 1.40
120 121 9.542462 CTTTCCATTACTCTCATAACGGAAATA 57.458 33.333 6.33 0.00 42.44 1.40
121 122 7.499232 CCTTTCCATTACTCTCATAACGGAAAT 59.501 37.037 6.33 0.00 42.44 2.17
122 123 6.821665 CCTTTCCATTACTCTCATAACGGAAA 59.178 38.462 5.87 5.87 41.63 3.13
123 124 6.346096 CCTTTCCATTACTCTCATAACGGAA 58.654 40.000 0.00 0.00 35.23 4.30
124 125 5.163343 CCCTTTCCATTACTCTCATAACGGA 60.163 44.000 0.00 0.00 0.00 4.69
125 126 5.057149 CCCTTTCCATTACTCTCATAACGG 58.943 45.833 0.00 0.00 0.00 4.44
126 127 5.671493 ACCCTTTCCATTACTCTCATAACG 58.329 41.667 0.00 0.00 0.00 3.18
127 128 9.057089 CATTACCCTTTCCATTACTCTCATAAC 57.943 37.037 0.00 0.00 0.00 1.89
128 129 7.719633 GCATTACCCTTTCCATTACTCTCATAA 59.280 37.037 0.00 0.00 0.00 1.90
129 130 7.224297 GCATTACCCTTTCCATTACTCTCATA 58.776 38.462 0.00 0.00 0.00 2.15
130 131 6.064717 GCATTACCCTTTCCATTACTCTCAT 58.935 40.000 0.00 0.00 0.00 2.90
131 132 5.437060 GCATTACCCTTTCCATTACTCTCA 58.563 41.667 0.00 0.00 0.00 3.27
132 133 4.822350 GGCATTACCCTTTCCATTACTCTC 59.178 45.833 0.00 0.00 0.00 3.20
133 134 4.793201 GGCATTACCCTTTCCATTACTCT 58.207 43.478 0.00 0.00 0.00 3.24
147 148 0.892063 TTTTTGAGCCGGGCATTACC 59.108 50.000 23.09 5.18 37.93 2.85
214 215 3.502979 GGAGTAAAACGCACCATTGGTAA 59.497 43.478 8.31 0.00 32.11 2.85
215 216 3.075884 GGAGTAAAACGCACCATTGGTA 58.924 45.455 8.31 0.00 32.11 3.25
216 217 1.883926 GGAGTAAAACGCACCATTGGT 59.116 47.619 1.37 1.37 35.62 3.67
219 220 3.134574 TCAGGAGTAAAACGCACCATT 57.865 42.857 0.00 0.00 0.00 3.16
294 295 1.128692 CGGAACAGAAATGTCGGCTTC 59.871 52.381 0.00 0.00 0.00 3.86
296 297 1.298859 GCGGAACAGAAATGTCGGCT 61.299 55.000 0.00 0.00 0.00 5.52
329 330 1.006102 AGAACGCAACAGGACTCGG 60.006 57.895 0.00 0.00 0.00 4.63
349 350 6.401153 GGTCAGTGAAGAAAAACGCATACTAG 60.401 42.308 0.00 0.00 0.00 2.57
351 352 4.213482 GGTCAGTGAAGAAAAACGCATACT 59.787 41.667 0.00 0.00 0.00 2.12
352 353 4.464112 GGTCAGTGAAGAAAAACGCATAC 58.536 43.478 0.00 0.00 0.00 2.39
409 419 0.979665 TAGGATGGATGGCTAGCTGC 59.020 55.000 15.72 1.06 41.94 5.25
410 420 3.106054 AGATAGGATGGATGGCTAGCTG 58.894 50.000 15.72 0.00 0.00 4.24
411 421 3.488355 AGATAGGATGGATGGCTAGCT 57.512 47.619 15.72 0.00 0.00 3.32
412 422 3.386402 GGTAGATAGGATGGATGGCTAGC 59.614 52.174 6.04 6.04 0.00 3.42
415 425 2.839228 GGGTAGATAGGATGGATGGCT 58.161 52.381 0.00 0.00 0.00 4.75
416 426 1.482593 CGGGTAGATAGGATGGATGGC 59.517 57.143 0.00 0.00 0.00 4.40
417 427 1.482593 GCGGGTAGATAGGATGGATGG 59.517 57.143 0.00 0.00 0.00 3.51
418 428 1.482593 GGCGGGTAGATAGGATGGATG 59.517 57.143 0.00 0.00 0.00 3.51
419 429 1.622725 GGGCGGGTAGATAGGATGGAT 60.623 57.143 0.00 0.00 0.00 3.41
420 430 0.252103 GGGCGGGTAGATAGGATGGA 60.252 60.000 0.00 0.00 0.00 3.41
421 431 1.265454 GGGGCGGGTAGATAGGATGG 61.265 65.000 0.00 0.00 0.00 3.51
422 432 0.544357 TGGGGCGGGTAGATAGGATG 60.544 60.000 0.00 0.00 0.00 3.51
583 593 2.205074 CTATGACCAGCCTAAGCAACG 58.795 52.381 0.00 0.00 43.56 4.10
593 603 5.746990 ATATTACTCCCACTATGACCAGC 57.253 43.478 0.00 0.00 0.00 4.85
594 604 8.830915 ATCTATATTACTCCCACTATGACCAG 57.169 38.462 0.00 0.00 0.00 4.00
595 605 9.922477 CTATCTATATTACTCCCACTATGACCA 57.078 37.037 0.00 0.00 0.00 4.02
596 606 9.924010 ACTATCTATATTACTCCCACTATGACC 57.076 37.037 0.00 0.00 0.00 4.02
616 626 8.037758 GCTTATGTGGCATCTATGTTACTATCT 58.962 37.037 0.00 0.00 0.00 1.98
617 627 7.819415 TGCTTATGTGGCATCTATGTTACTATC 59.181 37.037 0.00 0.00 34.56 2.08
618 628 7.679783 TGCTTATGTGGCATCTATGTTACTAT 58.320 34.615 0.00 0.00 34.56 2.12
619 629 7.061566 TGCTTATGTGGCATCTATGTTACTA 57.938 36.000 0.00 0.00 34.56 1.82
620 630 5.928976 TGCTTATGTGGCATCTATGTTACT 58.071 37.500 0.00 0.00 34.56 2.24
621 631 6.618287 TTGCTTATGTGGCATCTATGTTAC 57.382 37.500 0.00 0.00 39.54 2.50
622 632 7.637631 TTTTGCTTATGTGGCATCTATGTTA 57.362 32.000 0.00 0.00 39.54 2.41
623 633 6.528537 TTTTGCTTATGTGGCATCTATGTT 57.471 33.333 0.00 0.00 39.54 2.71
624 634 6.528537 TTTTTGCTTATGTGGCATCTATGT 57.471 33.333 0.00 0.00 39.54 2.29
625 635 7.204604 TCATTTTTGCTTATGTGGCATCTATG 58.795 34.615 0.00 0.00 39.54 2.23
626 636 7.350744 TCATTTTTGCTTATGTGGCATCTAT 57.649 32.000 0.00 0.00 39.54 1.98
627 637 6.772360 TCATTTTTGCTTATGTGGCATCTA 57.228 33.333 0.00 0.00 39.54 1.98
628 638 5.664294 TCATTTTTGCTTATGTGGCATCT 57.336 34.783 0.00 0.00 39.54 2.90
629 639 6.044046 TCATCATTTTTGCTTATGTGGCATC 58.956 36.000 0.00 0.00 39.54 3.91
630 640 5.979993 TCATCATTTTTGCTTATGTGGCAT 58.020 33.333 0.00 0.00 39.54 4.40
631 641 5.402997 TCATCATTTTTGCTTATGTGGCA 57.597 34.783 0.00 0.00 37.97 4.92
632 642 5.813672 ACATCATCATTTTTGCTTATGTGGC 59.186 36.000 0.00 0.00 0.00 5.01
633 643 7.229228 CACATCATCATTTTTGCTTATGTGG 57.771 36.000 0.00 0.00 39.34 4.17
634 644 6.237996 GCCACATCATCATTTTTGCTTATGTG 60.238 38.462 0.00 0.00 41.50 3.21
635 645 5.813672 GCCACATCATCATTTTTGCTTATGT 59.186 36.000 0.00 0.00 0.00 2.29
636 646 5.813157 TGCCACATCATCATTTTTGCTTATG 59.187 36.000 0.00 0.00 0.00 1.90
637 647 5.979993 TGCCACATCATCATTTTTGCTTAT 58.020 33.333 0.00 0.00 0.00 1.73
638 648 5.402997 TGCCACATCATCATTTTTGCTTA 57.597 34.783 0.00 0.00 0.00 3.09
639 649 4.274602 TGCCACATCATCATTTTTGCTT 57.725 36.364 0.00 0.00 0.00 3.91
640 650 3.965379 TGCCACATCATCATTTTTGCT 57.035 38.095 0.00 0.00 0.00 3.91
641 651 3.998341 ACTTGCCACATCATCATTTTTGC 59.002 39.130 0.00 0.00 0.00 3.68
642 652 6.392354 ACTACTTGCCACATCATCATTTTTG 58.608 36.000 0.00 0.00 0.00 2.44
643 653 6.594788 ACTACTTGCCACATCATCATTTTT 57.405 33.333 0.00 0.00 0.00 1.94
644 654 6.594788 AACTACTTGCCACATCATCATTTT 57.405 33.333 0.00 0.00 0.00 1.82
645 655 7.701539 TTAACTACTTGCCACATCATCATTT 57.298 32.000 0.00 0.00 0.00 2.32
646 656 7.557358 TCATTAACTACTTGCCACATCATCATT 59.443 33.333 0.00 0.00 0.00 2.57
647 657 7.056006 TCATTAACTACTTGCCACATCATCAT 58.944 34.615 0.00 0.00 0.00 2.45
648 658 6.413892 TCATTAACTACTTGCCACATCATCA 58.586 36.000 0.00 0.00 0.00 3.07
649 659 6.017605 CCTCATTAACTACTTGCCACATCATC 60.018 42.308 0.00 0.00 0.00 2.92
650 660 5.824624 CCTCATTAACTACTTGCCACATCAT 59.175 40.000 0.00 0.00 0.00 2.45
651 661 5.045942 TCCTCATTAACTACTTGCCACATCA 60.046 40.000 0.00 0.00 0.00 3.07
652 662 5.428253 TCCTCATTAACTACTTGCCACATC 58.572 41.667 0.00 0.00 0.00 3.06
653 663 5.189736 TCTCCTCATTAACTACTTGCCACAT 59.810 40.000 0.00 0.00 0.00 3.21
654 664 4.530553 TCTCCTCATTAACTACTTGCCACA 59.469 41.667 0.00 0.00 0.00 4.17
655 665 5.086104 TCTCCTCATTAACTACTTGCCAC 57.914 43.478 0.00 0.00 0.00 5.01
656 666 5.023452 TCTCTCCTCATTAACTACTTGCCA 58.977 41.667 0.00 0.00 0.00 4.92
657 667 5.452636 CCTCTCTCCTCATTAACTACTTGCC 60.453 48.000 0.00 0.00 0.00 4.52
658 668 5.596845 CCTCTCTCCTCATTAACTACTTGC 58.403 45.833 0.00 0.00 0.00 4.01
659 669 5.127845 TGCCTCTCTCCTCATTAACTACTTG 59.872 44.000 0.00 0.00 0.00 3.16
660 670 5.273208 TGCCTCTCTCCTCATTAACTACTT 58.727 41.667 0.00 0.00 0.00 2.24
661 671 4.873010 TGCCTCTCTCCTCATTAACTACT 58.127 43.478 0.00 0.00 0.00 2.57
662 672 5.599999 TTGCCTCTCTCCTCATTAACTAC 57.400 43.478 0.00 0.00 0.00 2.73
663 673 6.814954 ATTTGCCTCTCTCCTCATTAACTA 57.185 37.500 0.00 0.00 0.00 2.24
664 674 5.707066 ATTTGCCTCTCTCCTCATTAACT 57.293 39.130 0.00 0.00 0.00 2.24
665 675 6.821388 TCTATTTGCCTCTCTCCTCATTAAC 58.179 40.000 0.00 0.00 0.00 2.01
666 676 6.613271 ACTCTATTTGCCTCTCTCCTCATTAA 59.387 38.462 0.00 0.00 0.00 1.40
667 677 6.139671 ACTCTATTTGCCTCTCTCCTCATTA 58.860 40.000 0.00 0.00 0.00 1.90
668 678 4.968080 ACTCTATTTGCCTCTCTCCTCATT 59.032 41.667 0.00 0.00 0.00 2.57
669 679 4.555689 ACTCTATTTGCCTCTCTCCTCAT 58.444 43.478 0.00 0.00 0.00 2.90
670 680 3.987745 ACTCTATTTGCCTCTCTCCTCA 58.012 45.455 0.00 0.00 0.00 3.86
671 681 5.361285 TGTTACTCTATTTGCCTCTCTCCTC 59.639 44.000 0.00 0.00 0.00 3.71
672 682 5.273208 TGTTACTCTATTTGCCTCTCTCCT 58.727 41.667 0.00 0.00 0.00 3.69
673 683 5.599999 TGTTACTCTATTTGCCTCTCTCC 57.400 43.478 0.00 0.00 0.00 3.71
702 712 3.311596 GGAAACCGCTATGTGATGGTAAC 59.688 47.826 0.00 0.00 33.45 2.50
703 713 3.055021 TGGAAACCGCTATGTGATGGTAA 60.055 43.478 0.00 0.00 33.45 2.85
704 714 2.502130 TGGAAACCGCTATGTGATGGTA 59.498 45.455 0.00 0.00 33.45 3.25
705 715 1.280710 TGGAAACCGCTATGTGATGGT 59.719 47.619 0.00 0.00 35.90 3.55
706 716 2.036958 TGGAAACCGCTATGTGATGG 57.963 50.000 0.00 0.00 0.00 3.51
707 717 3.793129 GCATTGGAAACCGCTATGTGATG 60.793 47.826 0.00 0.00 0.00 3.07
708 718 2.358898 GCATTGGAAACCGCTATGTGAT 59.641 45.455 0.00 0.00 0.00 3.06
709 719 1.742831 GCATTGGAAACCGCTATGTGA 59.257 47.619 0.00 0.00 0.00 3.58
710 720 1.472082 TGCATTGGAAACCGCTATGTG 59.528 47.619 0.00 0.00 0.00 3.21
711 721 1.832883 TGCATTGGAAACCGCTATGT 58.167 45.000 0.00 0.00 0.00 2.29
712 722 4.566545 TTATGCATTGGAAACCGCTATG 57.433 40.909 3.54 0.00 0.00 2.23
713 723 4.826733 TCATTATGCATTGGAAACCGCTAT 59.173 37.500 3.54 0.00 0.00 2.97
714 724 4.203226 TCATTATGCATTGGAAACCGCTA 58.797 39.130 3.54 0.00 0.00 4.26
715 725 3.023119 TCATTATGCATTGGAAACCGCT 58.977 40.909 3.54 0.00 0.00 5.52
716 726 3.181487 ACTCATTATGCATTGGAAACCGC 60.181 43.478 3.54 0.00 0.00 5.68
717 727 4.336433 AGACTCATTATGCATTGGAAACCG 59.664 41.667 3.54 0.00 0.00 4.44
718 728 5.841957 AGACTCATTATGCATTGGAAACC 57.158 39.130 3.54 0.00 0.00 3.27
719 729 7.320443 TGTAGACTCATTATGCATTGGAAAC 57.680 36.000 3.54 0.00 0.00 2.78
720 730 7.936496 TTGTAGACTCATTATGCATTGGAAA 57.064 32.000 3.54 0.00 0.00 3.13
721 731 7.611467 ACTTTGTAGACTCATTATGCATTGGAA 59.389 33.333 3.54 0.00 0.00 3.53
722 732 7.112122 ACTTTGTAGACTCATTATGCATTGGA 58.888 34.615 3.54 0.00 0.00 3.53
723 733 7.325660 ACTTTGTAGACTCATTATGCATTGG 57.674 36.000 3.54 0.00 0.00 3.16
734 744 9.162764 GCCTTCATTTATTACTTTGTAGACTCA 57.837 33.333 0.00 0.00 0.00 3.41
735 745 9.162764 TGCCTTCATTTATTACTTTGTAGACTC 57.837 33.333 0.00 0.00 0.00 3.36
736 746 9.515226 TTGCCTTCATTTATTACTTTGTAGACT 57.485 29.630 0.00 0.00 0.00 3.24
737 747 9.556030 GTTGCCTTCATTTATTACTTTGTAGAC 57.444 33.333 0.00 0.00 0.00 2.59
738 748 9.515226 AGTTGCCTTCATTTATTACTTTGTAGA 57.485 29.630 0.00 0.00 0.00 2.59
746 756 9.946165 GGTAACATAGTTGCCTTCATTTATTAC 57.054 33.333 9.36 0.00 0.00 1.89
747 757 9.688091 TGGTAACATAGTTGCCTTCATTTATTA 57.312 29.630 16.08 0.00 46.17 0.98
748 758 8.588290 TGGTAACATAGTTGCCTTCATTTATT 57.412 30.769 16.08 0.00 46.17 1.40
767 777 6.924060 GTGGATAGTGTCATAGATGTGGTAAC 59.076 42.308 0.00 0.00 0.00 2.50
768 778 6.839134 AGTGGATAGTGTCATAGATGTGGTAA 59.161 38.462 0.00 0.00 0.00 2.85
769 779 6.373759 AGTGGATAGTGTCATAGATGTGGTA 58.626 40.000 0.00 0.00 0.00 3.25
770 780 5.211973 AGTGGATAGTGTCATAGATGTGGT 58.788 41.667 0.00 0.00 0.00 4.16
771 781 5.798125 AGTGGATAGTGTCATAGATGTGG 57.202 43.478 0.00 0.00 0.00 4.17
772 782 8.115490 TCATAGTGGATAGTGTCATAGATGTG 57.885 38.462 0.00 0.00 0.00 3.21
773 783 8.712228 TTCATAGTGGATAGTGTCATAGATGT 57.288 34.615 0.00 0.00 0.00 3.06
774 784 8.249638 CCTTCATAGTGGATAGTGTCATAGATG 58.750 40.741 0.00 0.00 0.00 2.90
775 785 7.952930 ACCTTCATAGTGGATAGTGTCATAGAT 59.047 37.037 0.00 0.00 0.00 1.98
776 786 7.298374 ACCTTCATAGTGGATAGTGTCATAGA 58.702 38.462 0.00 0.00 0.00 1.98
777 787 7.531857 ACCTTCATAGTGGATAGTGTCATAG 57.468 40.000 0.00 0.00 0.00 2.23
778 788 8.225416 ACTACCTTCATAGTGGATAGTGTCATA 58.775 37.037 0.00 0.00 34.02 2.15
779 789 7.069986 ACTACCTTCATAGTGGATAGTGTCAT 58.930 38.462 0.00 0.00 34.02 3.06
780 790 6.432581 ACTACCTTCATAGTGGATAGTGTCA 58.567 40.000 0.00 0.00 34.02 3.58
781 791 6.963083 ACTACCTTCATAGTGGATAGTGTC 57.037 41.667 0.00 0.00 34.02 3.67
782 792 7.837689 TGTTACTACCTTCATAGTGGATAGTGT 59.162 37.037 0.00 0.00 36.09 3.55
783 793 8.234136 TGTTACTACCTTCATAGTGGATAGTG 57.766 38.462 0.00 0.00 36.09 2.74
787 797 9.080097 GTCTATGTTACTACCTTCATAGTGGAT 57.920 37.037 0.00 0.00 40.01 3.41
788 798 8.280084 AGTCTATGTTACTACCTTCATAGTGGA 58.720 37.037 0.00 0.00 40.01 4.02
789 799 8.466617 AGTCTATGTTACTACCTTCATAGTGG 57.533 38.462 0.00 0.00 40.01 4.00
795 805 9.964354 TGTTACTAGTCTATGTTACTACCTTCA 57.036 33.333 0.00 0.00 0.00 3.02
827 837 9.585369 GTGGGGAGTAAGTTAGACTAGTAATAT 57.415 37.037 0.00 0.00 0.00 1.28
828 838 8.785859 AGTGGGGAGTAAGTTAGACTAGTAATA 58.214 37.037 0.00 0.00 0.00 0.98
829 839 7.650660 AGTGGGGAGTAAGTTAGACTAGTAAT 58.349 38.462 0.00 0.00 0.00 1.89
830 840 7.037342 AGTGGGGAGTAAGTTAGACTAGTAA 57.963 40.000 0.00 0.00 0.00 2.24
831 841 6.649041 AGTGGGGAGTAAGTTAGACTAGTA 57.351 41.667 0.00 0.00 0.00 1.82
832 842 5.533333 AGTGGGGAGTAAGTTAGACTAGT 57.467 43.478 0.00 0.00 0.00 2.57
833 843 7.229106 GTCATAGTGGGGAGTAAGTTAGACTAG 59.771 44.444 0.00 0.00 0.00 2.57
834 844 7.059156 GTCATAGTGGGGAGTAAGTTAGACTA 58.941 42.308 0.00 0.00 0.00 2.59
835 845 5.892686 GTCATAGTGGGGAGTAAGTTAGACT 59.107 44.000 0.00 0.00 0.00 3.24
836 846 5.068855 GGTCATAGTGGGGAGTAAGTTAGAC 59.931 48.000 0.00 0.00 0.00 2.59
837 847 5.206587 GGTCATAGTGGGGAGTAAGTTAGA 58.793 45.833 0.00 0.00 0.00 2.10
838 848 4.960469 TGGTCATAGTGGGGAGTAAGTTAG 59.040 45.833 0.00 0.00 0.00 2.34
839 849 4.950361 TGGTCATAGTGGGGAGTAAGTTA 58.050 43.478 0.00 0.00 0.00 2.24
840 850 3.775316 CTGGTCATAGTGGGGAGTAAGTT 59.225 47.826 0.00 0.00 0.00 2.66
841 851 3.375699 CTGGTCATAGTGGGGAGTAAGT 58.624 50.000 0.00 0.00 0.00 2.24
842 852 2.103263 GCTGGTCATAGTGGGGAGTAAG 59.897 54.545 0.00 0.00 0.00 2.34
843 853 2.116238 GCTGGTCATAGTGGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
844 854 1.691482 GGCTGGTCATAGTGGGGAGTA 60.691 57.143 0.00 0.00 0.00 2.59
845 855 0.983378 GGCTGGTCATAGTGGGGAGT 60.983 60.000 0.00 0.00 0.00 3.85
846 856 0.692419 AGGCTGGTCATAGTGGGGAG 60.692 60.000 0.00 0.00 0.00 4.30
847 857 0.253160 AAGGCTGGTCATAGTGGGGA 60.253 55.000 0.00 0.00 0.00 4.81
848 858 1.417890 CTAAGGCTGGTCATAGTGGGG 59.582 57.143 0.00 0.00 0.00 4.96
849 859 1.202698 GCTAAGGCTGGTCATAGTGGG 60.203 57.143 0.00 0.00 35.22 4.61
850 860 1.539065 CGCTAAGGCTGGTCATAGTGG 60.539 57.143 0.00 0.00 36.09 4.00
851 861 1.858091 CGCTAAGGCTGGTCATAGTG 58.142 55.000 0.00 0.00 36.09 2.74
852 862 0.105039 GCGCTAAGGCTGGTCATAGT 59.895 55.000 0.00 0.00 36.09 2.12
853 863 0.941463 CGCGCTAAGGCTGGTCATAG 60.941 60.000 5.56 0.00 36.09 2.23
854 864 1.067416 CGCGCTAAGGCTGGTCATA 59.933 57.895 5.56 0.00 36.09 2.15
855 865 1.672854 TACGCGCTAAGGCTGGTCAT 61.673 55.000 5.73 0.00 36.09 3.06
856 866 2.344981 TACGCGCTAAGGCTGGTCA 61.345 57.895 5.73 0.00 36.09 4.02
857 867 1.877165 GTACGCGCTAAGGCTGGTC 60.877 63.158 5.73 0.00 36.09 4.02
858 868 2.183555 GTACGCGCTAAGGCTGGT 59.816 61.111 5.73 0.00 36.09 4.00
859 869 2.585247 GGTACGCGCTAAGGCTGG 60.585 66.667 5.73 0.00 36.09 4.85
860 870 2.585247 GGGTACGCGCTAAGGCTG 60.585 66.667 5.73 0.00 36.09 4.85
861 871 4.203076 CGGGTACGCGCTAAGGCT 62.203 66.667 19.76 0.00 36.09 4.58
862 872 3.495352 ATCGGGTACGCGCTAAGGC 62.495 63.158 25.81 0.00 40.69 4.35
863 873 1.371389 GATCGGGTACGCGCTAAGG 60.371 63.158 25.81 0.72 40.69 2.69
917 927 2.529136 CCTGTGTGGGAGTGGGGA 60.529 66.667 0.00 0.00 0.00 4.81
945 955 2.692368 TGGGGAGTGAGGGATGGC 60.692 66.667 0.00 0.00 0.00 4.40
1261 1280 1.153939 GCTCGCGCAAGAAGAGAGA 60.154 57.895 8.75 0.00 43.32 3.10
1410 1429 1.340017 ACCTTGTAGCATGAACCGCAT 60.340 47.619 0.00 0.00 37.85 4.73
1442 1461 7.934457 ACTGTAAACTGTTTCTCTTCTACGTA 58.066 34.615 9.38 0.00 0.00 3.57
1477 1509 2.844839 GCTGGGGATCGGCCTAGT 60.845 66.667 0.00 0.00 41.83 2.57
1478 1510 3.996124 CGCTGGGGATCGGCCTAG 61.996 72.222 0.00 0.00 44.74 3.02
1537 1571 1.447317 CTCAACACACACAGGCACCC 61.447 60.000 0.00 0.00 0.00 4.61
1540 1574 0.809636 CGACTCAACACACACAGGCA 60.810 55.000 0.00 0.00 0.00 4.75
1542 1576 0.530650 AGCGACTCAACACACACAGG 60.531 55.000 0.00 0.00 0.00 4.00
1543 1577 1.290203 AAGCGACTCAACACACACAG 58.710 50.000 0.00 0.00 0.00 3.66
1612 1648 2.697425 CAATCGACGCGCTTCCTG 59.303 61.111 5.73 0.00 0.00 3.86
1637 1673 3.672295 CTTCAGGCACCGGAGAGGC 62.672 68.421 9.46 10.34 46.52 4.70
1676 1713 2.897436 TCCTGCATCTGATCTGAAACG 58.103 47.619 6.37 0.25 0.00 3.60
1876 1913 0.822944 TGTTGCTGGCTTGCTGCTAA 60.823 50.000 0.00 0.00 42.39 3.09
1877 1914 1.228215 TGTTGCTGGCTTGCTGCTA 60.228 52.632 0.00 0.00 42.39 3.49
1878 1915 2.520020 TGTTGCTGGCTTGCTGCT 60.520 55.556 0.00 0.00 42.39 4.24
1879 1916 2.355481 GTGTTGCTGGCTTGCTGC 60.355 61.111 0.00 0.00 41.94 5.25
1880 1917 2.198287 AGGTGTTGCTGGCTTGCTG 61.198 57.895 4.89 0.00 0.00 4.41
1881 1918 2.196776 AGGTGTTGCTGGCTTGCT 59.803 55.556 4.89 0.00 0.00 3.91
1882 1919 2.337532 CAGGTGTTGCTGGCTTGC 59.662 61.111 0.00 0.00 0.00 4.01
1932 1971 6.810911 TGCAAAATGGCGGTACATATTTATT 58.189 32.000 0.00 0.00 36.28 1.40
1933 1972 6.398234 TGCAAAATGGCGGTACATATTTAT 57.602 33.333 0.00 0.00 36.28 1.40
1934 1973 5.836821 TGCAAAATGGCGGTACATATTTA 57.163 34.783 0.00 0.00 36.28 1.40
1935 1974 4.727507 TGCAAAATGGCGGTACATATTT 57.272 36.364 0.00 0.00 36.28 1.40
1939 1978 3.393089 TTTTGCAAAATGGCGGTACAT 57.607 38.095 20.46 0.00 36.28 2.29
1983 2022 0.604511 ACTTTTAACTGCCCGGACGG 60.605 55.000 0.73 0.00 0.00 4.79
2080 2188 3.504273 TGTGTGTGTGTGTGGCGC 61.504 61.111 0.00 0.00 0.00 6.53
2082 2190 1.024046 TGAGTGTGTGTGTGTGTGGC 61.024 55.000 0.00 0.00 0.00 5.01
2083 2191 0.726827 GTGAGTGTGTGTGTGTGTGG 59.273 55.000 0.00 0.00 0.00 4.17
2099 2213 2.363018 CGGGGCAGAGGAGAGTGA 60.363 66.667 0.00 0.00 0.00 3.41
2144 2449 1.301677 GCTGAGCCCTGTGTGCTTAC 61.302 60.000 0.00 0.00 39.69 2.34
2146 2451 2.282040 GCTGAGCCCTGTGTGCTT 60.282 61.111 0.00 0.00 39.69 3.91
2189 2494 2.211619 TATGCCGTGCTGCAAAAGGC 62.212 55.000 27.36 27.36 45.84 4.35
2281 2586 3.122948 CGGAATATTGTATCTTTCGGCCG 59.877 47.826 22.12 22.12 0.00 6.13
2337 2750 6.113411 TCATCACAAGATCGTACTCTACTCA 58.887 40.000 0.00 0.00 30.20 3.41
2729 3191 3.552541 CCGCGTAGTAGCATTACTAGTG 58.447 50.000 5.39 0.00 41.75 2.74
2779 3242 0.611714 ACCGTACACTCCCAATGACC 59.388 55.000 0.00 0.00 0.00 4.02
2894 3398 1.272536 ACGACTCATCACACCCCTAGT 60.273 52.381 0.00 0.00 0.00 2.57
3075 3584 4.388577 AAGGAAAAGGAGGCACAAGTAT 57.611 40.909 0.00 0.00 0.00 2.12
3093 3602 9.696917 AAGAAACTTGAAGTGCATAATAAAAGG 57.303 29.630 0.00 0.00 0.00 3.11
3097 3606 9.474920 CCAAAAGAAACTTGAAGTGCATAATAA 57.525 29.630 0.00 0.00 0.00 1.40
3098 3607 8.637986 ACCAAAAGAAACTTGAAGTGCATAATA 58.362 29.630 0.00 0.00 0.00 0.98
3114 3623 8.736244 GCTGTAACCATAATAGACCAAAAGAAA 58.264 33.333 0.00 0.00 0.00 2.52
3123 3632 9.665264 GCATTTTTAGCTGTAACCATAATAGAC 57.335 33.333 0.00 0.00 0.00 2.59
3150 3691 9.462174 CACACTGAACTATTTTTATGCTTTTCA 57.538 29.630 0.00 0.00 0.00 2.69
3153 3694 7.232534 TCCCACACTGAACTATTTTTATGCTTT 59.767 33.333 0.00 0.00 0.00 3.51
3166 3707 7.595819 TGAAATTAAATTCCCACACTGAACT 57.404 32.000 0.85 0.00 0.00 3.01
3174 3715 5.691754 GGATGCGATGAAATTAAATTCCCAC 59.308 40.000 0.85 0.00 0.00 4.61
3179 3720 7.995289 TGTGTAGGATGCGATGAAATTAAATT 58.005 30.769 0.00 0.00 0.00 1.82
3182 3723 6.993786 TTGTGTAGGATGCGATGAAATTAA 57.006 33.333 0.00 0.00 0.00 1.40
3183 3724 6.992123 AGATTGTGTAGGATGCGATGAAATTA 59.008 34.615 0.00 0.00 0.00 1.40
3193 3734 5.698545 GGAACTATGAGATTGTGTAGGATGC 59.301 44.000 0.00 0.00 0.00 3.91
3203 3746 3.133003 ACTGTCCCGGAACTATGAGATTG 59.867 47.826 0.73 0.00 0.00 2.67
3230 3776 3.118884 CCCTTTCCTTTTGCTGGATCATG 60.119 47.826 0.00 0.00 33.09 3.07
3232 3778 2.109834 TCCCTTTCCTTTTGCTGGATCA 59.890 45.455 0.00 0.00 33.09 2.92
3234 3780 2.999185 TCCCTTTCCTTTTGCTGGAT 57.001 45.000 0.00 0.00 33.09 3.41
3247 3793 0.105964 GGCGCCAACTTTTTCCCTTT 59.894 50.000 24.80 0.00 0.00 3.11
3248 3794 1.745890 GGCGCCAACTTTTTCCCTT 59.254 52.632 24.80 0.00 0.00 3.95
3249 3795 2.561037 CGGCGCCAACTTTTTCCCT 61.561 57.895 28.98 0.00 0.00 4.20
3250 3796 2.049526 CGGCGCCAACTTTTTCCC 60.050 61.111 28.98 0.00 0.00 3.97
3251 3797 1.660264 CACGGCGCCAACTTTTTCC 60.660 57.895 28.98 0.00 0.00 3.13
3252 3798 2.300066 GCACGGCGCCAACTTTTTC 61.300 57.895 28.98 1.84 32.94 2.29
3253 3799 2.279186 GCACGGCGCCAACTTTTT 60.279 55.556 28.98 0.00 32.94 1.94
3254 3800 2.362329 AATGCACGGCGCCAACTTTT 62.362 50.000 28.98 11.21 41.33 2.27
3305 3851 3.649073 AGCGGTAAAAGGTTTGCAAATC 58.351 40.909 16.21 15.49 0.00 2.17
3310 3856 3.364889 AAGAAGCGGTAAAAGGTTTGC 57.635 42.857 0.00 0.00 0.00 3.68
3333 3898 2.943199 GCTTAGCCAAGGAATCTGCAGT 60.943 50.000 14.67 0.00 31.96 4.40
3348 3913 1.654954 ATGTGCTGCTGCTGCTTAGC 61.655 55.000 27.67 17.57 41.49 3.09
3360 3925 0.457166 CGGCAACCAATCATGTGCTG 60.457 55.000 4.03 1.50 0.00 4.41
3436 4004 0.632835 TCTACGGTGGGGAGTGGTAT 59.367 55.000 0.00 0.00 0.00 2.73
3476 4047 2.432628 GTCGAACTGGCAGGACGG 60.433 66.667 25.91 11.70 0.00 4.79
3477 4048 2.805353 CGTCGAACTGGCAGGACG 60.805 66.667 23.46 23.46 44.92 4.79
3515 4087 2.092592 GGGGAATTTCTCTCCGGCTAAA 60.093 50.000 0.00 0.00 33.93 1.85
3518 4090 1.915983 GGGGAATTTCTCTCCGGCT 59.084 57.895 0.00 0.00 33.93 5.52
3626 4198 2.125269 ATTTCGAAGGCCCGGACG 60.125 61.111 0.73 0.00 0.00 4.79
3639 4211 2.548480 GCGGTACAGCTAATGGGATTTC 59.452 50.000 10.99 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.