Multiple sequence alignment - TraesCS1A01G212500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G212500 | chr1A | 100.000 | 2357 | 0 | 0 | 1 | 2357 | 375465022 | 375467378 | 0.000000e+00 | 4353 |
1 | TraesCS1A01G212500 | chr1A | 93.229 | 192 | 12 | 1 | 1571 | 1761 | 476908479 | 476908288 | 4.960000e-72 | 281 |
2 | TraesCS1A01G212500 | chr7D | 83.432 | 1346 | 191 | 21 | 424 | 1761 | 577855283 | 577853962 | 0.000000e+00 | 1221 |
3 | TraesCS1A01G212500 | chr7D | 77.456 | 621 | 104 | 26 | 1157 | 1763 | 158992803 | 158993401 | 2.900000e-89 | 339 |
4 | TraesCS1A01G212500 | chr2A | 81.569 | 1351 | 221 | 24 | 424 | 1764 | 650491161 | 650492493 | 0.000000e+00 | 1090 |
5 | TraesCS1A01G212500 | chr2A | 98.895 | 181 | 2 | 0 | 2177 | 2357 | 49232476 | 49232296 | 8.120000e-85 | 324 |
6 | TraesCS1A01G212500 | chr5B | 80.681 | 1351 | 220 | 29 | 424 | 1762 | 17684358 | 17683037 | 0.000000e+00 | 1011 |
7 | TraesCS1A01G212500 | chr5B | 95.855 | 193 | 5 | 3 | 2167 | 2357 | 433892775 | 433892584 | 2.280000e-80 | 309 |
8 | TraesCS1A01G212500 | chr7B | 79.249 | 1359 | 226 | 43 | 424 | 1763 | 87119582 | 87120903 | 0.000000e+00 | 896 |
9 | TraesCS1A01G212500 | chr7B | 97.826 | 184 | 2 | 2 | 2175 | 2357 | 503365307 | 503365489 | 1.360000e-82 | 316 |
10 | TraesCS1A01G212500 | chr1B | 78.598 | 1355 | 234 | 40 | 424 | 1760 | 593051896 | 593053212 | 0.000000e+00 | 845 |
11 | TraesCS1A01G212500 | chr1B | 93.187 | 411 | 21 | 4 | 1778 | 2184 | 406035274 | 406035681 | 4.340000e-167 | 597 |
12 | TraesCS1A01G212500 | chr1B | 91.085 | 258 | 23 | 0 | 1 | 258 | 405987311 | 405987568 | 1.340000e-92 | 350 |
13 | TraesCS1A01G212500 | chr1B | 90.683 | 161 | 15 | 0 | 254 | 414 | 406033609 | 406033769 | 5.100000e-52 | 215 |
14 | TraesCS1A01G212500 | chr6D | 92.185 | 563 | 39 | 5 | 1200 | 1760 | 84476721 | 84476162 | 0.000000e+00 | 791 |
15 | TraesCS1A01G212500 | chr3A | 81.772 | 790 | 139 | 5 | 424 | 1210 | 595278959 | 595279746 | 0.000000e+00 | 656 |
16 | TraesCS1A01G212500 | chr1D | 91.971 | 411 | 23 | 8 | 1776 | 2184 | 300857880 | 300858282 | 3.400000e-158 | 568 |
17 | TraesCS1A01G212500 | chr1D | 91.063 | 414 | 37 | 0 | 1 | 414 | 300855952 | 300856365 | 5.690000e-156 | 560 |
18 | TraesCS1A01G212500 | chr1D | 80.669 | 269 | 37 | 14 | 1504 | 1761 | 270036579 | 270036843 | 6.650000e-46 | 195 |
19 | TraesCS1A01G212500 | chr1D | 80.224 | 268 | 39 | 13 | 1504 | 1761 | 431797688 | 431797951 | 3.090000e-44 | 189 |
20 | TraesCS1A01G212500 | chr6B | 78.954 | 784 | 159 | 6 | 569 | 1349 | 658638780 | 658638000 | 1.600000e-146 | 529 |
21 | TraesCS1A01G212500 | chr6B | 98.343 | 181 | 3 | 0 | 2177 | 2357 | 544080898 | 544081078 | 3.780000e-83 | 318 |
22 | TraesCS1A01G212500 | chr2D | 77.862 | 795 | 163 | 12 | 545 | 1332 | 55095124 | 55095912 | 4.560000e-132 | 481 |
23 | TraesCS1A01G212500 | chr7A | 99.448 | 181 | 1 | 0 | 2177 | 2357 | 460109694 | 460109514 | 1.750000e-86 | 329 |
24 | TraesCS1A01G212500 | chr7A | 99.438 | 178 | 1 | 0 | 2180 | 2357 | 580227320 | 580227143 | 8.120000e-85 | 324 |
25 | TraesCS1A01G212500 | chr5A | 98.901 | 182 | 1 | 1 | 2177 | 2357 | 593498809 | 593498628 | 8.120000e-85 | 324 |
26 | TraesCS1A01G212500 | chr4B | 97.340 | 188 | 3 | 2 | 2170 | 2357 | 396520527 | 396520342 | 3.780000e-83 | 318 |
27 | TraesCS1A01G212500 | chr4B | 98.343 | 181 | 2 | 1 | 2177 | 2357 | 421581634 | 421581813 | 1.360000e-82 | 316 |
28 | TraesCS1A01G212500 | chr2B | 74.596 | 681 | 156 | 16 | 653 | 1323 | 748211943 | 748212616 | 1.380000e-72 | 283 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G212500 | chr1A | 375465022 | 375467378 | 2356 | False | 4353 | 4353 | 100.000 | 1 | 2357 | 1 | chr1A.!!$F1 | 2356 |
1 | TraesCS1A01G212500 | chr7D | 577853962 | 577855283 | 1321 | True | 1221 | 1221 | 83.432 | 424 | 1761 | 1 | chr7D.!!$R1 | 1337 |
2 | TraesCS1A01G212500 | chr7D | 158992803 | 158993401 | 598 | False | 339 | 339 | 77.456 | 1157 | 1763 | 1 | chr7D.!!$F1 | 606 |
3 | TraesCS1A01G212500 | chr2A | 650491161 | 650492493 | 1332 | False | 1090 | 1090 | 81.569 | 424 | 1764 | 1 | chr2A.!!$F1 | 1340 |
4 | TraesCS1A01G212500 | chr5B | 17683037 | 17684358 | 1321 | True | 1011 | 1011 | 80.681 | 424 | 1762 | 1 | chr5B.!!$R1 | 1338 |
5 | TraesCS1A01G212500 | chr7B | 87119582 | 87120903 | 1321 | False | 896 | 896 | 79.249 | 424 | 1763 | 1 | chr7B.!!$F1 | 1339 |
6 | TraesCS1A01G212500 | chr1B | 593051896 | 593053212 | 1316 | False | 845 | 845 | 78.598 | 424 | 1760 | 1 | chr1B.!!$F2 | 1336 |
7 | TraesCS1A01G212500 | chr1B | 406033609 | 406035681 | 2072 | False | 406 | 597 | 91.935 | 254 | 2184 | 2 | chr1B.!!$F3 | 1930 |
8 | TraesCS1A01G212500 | chr6D | 84476162 | 84476721 | 559 | True | 791 | 791 | 92.185 | 1200 | 1760 | 1 | chr6D.!!$R1 | 560 |
9 | TraesCS1A01G212500 | chr3A | 595278959 | 595279746 | 787 | False | 656 | 656 | 81.772 | 424 | 1210 | 1 | chr3A.!!$F1 | 786 |
10 | TraesCS1A01G212500 | chr1D | 300855952 | 300858282 | 2330 | False | 564 | 568 | 91.517 | 1 | 2184 | 2 | chr1D.!!$F3 | 2183 |
11 | TraesCS1A01G212500 | chr6B | 658638000 | 658638780 | 780 | True | 529 | 529 | 78.954 | 569 | 1349 | 1 | chr6B.!!$R1 | 780 |
12 | TraesCS1A01G212500 | chr2D | 55095124 | 55095912 | 788 | False | 481 | 481 | 77.862 | 545 | 1332 | 1 | chr2D.!!$F1 | 787 |
13 | TraesCS1A01G212500 | chr2B | 748211943 | 748212616 | 673 | False | 283 | 283 | 74.596 | 653 | 1323 | 1 | chr2B.!!$F1 | 670 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
190 | 191 | 0.110486 | AGGAGTTGAAATGGCCACGT | 59.89 | 50.0 | 8.16 | 0.0 | 0.0 | 4.49 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2000 | 4169 | 0.979665 | TAGGATGGATGGCTAGCTGC | 59.02 | 55.0 | 15.72 | 1.06 | 41.94 | 5.25 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
17 | 18 | 3.490890 | GCCCTGAGCTTTGCTACG | 58.509 | 61.111 | 0.00 | 0.00 | 39.88 | 3.51 |
20 | 21 | 0.460987 | CCCTGAGCTTTGCTACGAGG | 60.461 | 60.000 | 0.00 | 0.00 | 39.88 | 4.63 |
31 | 32 | 1.517832 | CTACGAGGGAGGCCAAGTG | 59.482 | 63.158 | 5.01 | 0.00 | 0.00 | 3.16 |
32 | 33 | 0.970937 | CTACGAGGGAGGCCAAGTGA | 60.971 | 60.000 | 5.01 | 0.00 | 0.00 | 3.41 |
35 | 36 | 1.599576 | GAGGGAGGCCAAGTGAGAC | 59.400 | 63.158 | 5.01 | 0.00 | 0.00 | 3.36 |
37 | 38 | 2.224159 | GGGAGGCCAAGTGAGACCA | 61.224 | 63.158 | 5.01 | 0.00 | 0.00 | 4.02 |
45 | 46 | 1.339151 | CCAAGTGAGACCAAGGCTACC | 60.339 | 57.143 | 0.00 | 0.00 | 0.00 | 3.18 |
49 | 50 | 1.192146 | TGAGACCAAGGCTACCGCTT | 61.192 | 55.000 | 0.00 | 0.00 | 36.09 | 4.68 |
54 | 55 | 1.296715 | CAAGGCTACCGCTTGGAGT | 59.703 | 57.895 | 0.00 | 0.00 | 36.26 | 3.85 |
62 | 63 | 2.664851 | CGCTTGGAGTGGACGCAA | 60.665 | 61.111 | 0.00 | 0.00 | 0.00 | 4.85 |
79 | 80 | 2.159627 | CGCAACAAGACACCCTCAATAC | 59.840 | 50.000 | 0.00 | 0.00 | 0.00 | 1.89 |
89 | 90 | 1.623811 | ACCCTCAATACAGCAAGACGT | 59.376 | 47.619 | 0.00 | 0.00 | 0.00 | 4.34 |
119 | 120 | 4.570663 | GTCGTCGAGGGGATGCCG | 62.571 | 72.222 | 5.12 | 0.00 | 0.00 | 5.69 |
124 | 125 | 3.625897 | CGAGGGGATGCCGCCATA | 61.626 | 66.667 | 0.00 | 0.00 | 46.90 | 2.74 |
142 | 143 | 1.072266 | TACCCACTGGACCAAGCAAT | 58.928 | 50.000 | 0.00 | 0.00 | 34.81 | 3.56 |
144 | 145 | 0.540365 | CCCACTGGACCAAGCAATGT | 60.540 | 55.000 | 0.00 | 0.00 | 0.00 | 2.71 |
156 | 157 | 2.387445 | GCAATGTGTCGCCGCTACA | 61.387 | 57.895 | 0.00 | 0.00 | 0.00 | 2.74 |
158 | 159 | 1.014044 | CAATGTGTCGCCGCTACACT | 61.014 | 55.000 | 23.89 | 10.67 | 45.95 | 3.55 |
163 | 164 | 1.029681 | TGTCGCCGCTACACTATGAT | 58.970 | 50.000 | 0.00 | 0.00 | 0.00 | 2.45 |
190 | 191 | 0.110486 | AGGAGTTGAAATGGCCACGT | 59.890 | 50.000 | 8.16 | 0.00 | 0.00 | 4.49 |
230 | 231 | 2.031807 | CGTAGAGGTCACGTGAATCGAT | 59.968 | 50.000 | 21.95 | 11.58 | 42.86 | 3.59 |
339 | 340 | 1.535462 | AGTTCATTTTCGCGGTCCAAG | 59.465 | 47.619 | 6.13 | 0.00 | 0.00 | 3.61 |
350 | 351 | 2.223021 | CGCGGTCCAAGAACATTGTATG | 60.223 | 50.000 | 0.00 | 0.00 | 0.00 | 2.39 |
414 | 415 | 5.723355 | AGGATTACACCCTATGCCTAACTA | 58.277 | 41.667 | 0.00 | 0.00 | 30.92 | 2.24 |
415 | 416 | 6.148186 | AGGATTACACCCTATGCCTAACTAA | 58.852 | 40.000 | 0.00 | 0.00 | 30.92 | 2.24 |
416 | 417 | 6.270231 | AGGATTACACCCTATGCCTAACTAAG | 59.730 | 42.308 | 0.00 | 0.00 | 30.92 | 2.18 |
417 | 418 | 6.269307 | GGATTACACCCTATGCCTAACTAAGA | 59.731 | 42.308 | 0.00 | 0.00 | 0.00 | 2.10 |
418 | 419 | 7.038231 | GGATTACACCCTATGCCTAACTAAGAT | 60.038 | 40.741 | 0.00 | 0.00 | 0.00 | 2.40 |
419 | 420 | 5.552870 | ACACCCTATGCCTAACTAAGATG | 57.447 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
422 | 423 | 6.330250 | ACACCCTATGCCTAACTAAGATGATT | 59.670 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
453 | 515 | 8.160106 | CCTATCTGGAAAGCTATTATGAAGGTT | 58.840 | 37.037 | 0.00 | 0.00 | 38.35 | 3.50 |
459 | 521 | 8.333235 | TGGAAAGCTATTATGAAGGTTAAGGAA | 58.667 | 33.333 | 0.00 | 0.00 | 33.74 | 3.36 |
460 | 522 | 8.622157 | GGAAAGCTATTATGAAGGTTAAGGAAC | 58.378 | 37.037 | 0.00 | 0.00 | 33.74 | 3.62 |
477 | 539 | 9.490379 | GTTAAGGAACACTATATGATTGGTAGG | 57.510 | 37.037 | 0.00 | 0.00 | 35.48 | 3.18 |
582 | 777 | 2.031683 | GGTGCTGTTCAGTGTGTGTAAC | 59.968 | 50.000 | 1.78 | 0.00 | 37.35 | 2.50 |
605 | 800 | 7.798596 | ACAATCAAGAGATAATTGTAGCCAG | 57.201 | 36.000 | 0.00 | 0.00 | 40.76 | 4.85 |
624 | 819 | 1.912043 | AGGTTCAGGGAGAATGTGGAG | 59.088 | 52.381 | 0.00 | 0.00 | 38.76 | 3.86 |
626 | 821 | 0.620556 | TTCAGGGAGAATGTGGAGGC | 59.379 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
663 | 862 | 2.117865 | AGGCTCAATCCTCCTCTTCTG | 58.882 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
747 | 946 | 2.325484 | GTTGTTTGGTCCCTGGGAAAT | 58.675 | 47.619 | 19.06 | 0.00 | 31.38 | 2.17 |
793 | 995 | 9.440761 | AATCTGTTTATAGTTACCTGGAGAGAT | 57.559 | 33.333 | 0.00 | 0.00 | 0.00 | 2.75 |
999 | 1203 | 1.272313 | ACCTGTCCGGTTGCTAGAGTA | 60.272 | 52.381 | 0.00 | 0.00 | 46.37 | 2.59 |
1010 | 1214 | 4.101741 | GGTTGCTAGAGTAATGTGGAGGAT | 59.898 | 45.833 | 0.00 | 0.00 | 0.00 | 3.24 |
1017 | 1221 | 3.967987 | GAGTAATGTGGAGGATAGTGGGT | 59.032 | 47.826 | 0.00 | 0.00 | 0.00 | 4.51 |
1027 | 1231 | 1.883926 | GGATAGTGGGTTGCGTTTTGT | 59.116 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
1032 | 1236 | 1.132643 | GTGGGTTGCGTTTTGTGTACA | 59.867 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
1045 | 2099 | 3.861276 | TGTGTACAGATAGTTGTCCGG | 57.139 | 47.619 | 0.00 | 0.00 | 32.56 | 5.14 |
1066 | 2120 | 4.634004 | CGGACAATCTGTGGCAATACTTTA | 59.366 | 41.667 | 0.00 | 0.00 | 36.72 | 1.85 |
1067 | 2121 | 5.296780 | CGGACAATCTGTGGCAATACTTTAT | 59.703 | 40.000 | 0.00 | 0.00 | 36.72 | 1.40 |
1079 | 2133 | 7.602265 | GTGGCAATACTTTATTTGGTGTCATTT | 59.398 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
1137 | 2228 | 3.133464 | GCTGCGTTATGCTGGGCA | 61.133 | 61.111 | 5.51 | 0.00 | 46.63 | 5.36 |
1309 | 2988 | 1.895798 | TGAGGATCAACACTTCGAGCT | 59.104 | 47.619 | 0.00 | 0.00 | 45.97 | 4.09 |
1325 | 3004 | 2.548875 | GAGCTTGATGAGAATCTGCGT | 58.451 | 47.619 | 0.00 | 0.00 | 34.92 | 5.24 |
1370 | 3090 | 0.105039 | GGGTGAAGATGGAGTAGCGG | 59.895 | 60.000 | 0.00 | 0.00 | 0.00 | 5.52 |
1385 | 3105 | 0.322456 | AGCGGTGCAGATGGCTTTTA | 60.322 | 50.000 | 0.00 | 0.00 | 45.15 | 1.52 |
1386 | 3106 | 0.525761 | GCGGTGCAGATGGCTTTTAA | 59.474 | 50.000 | 0.00 | 0.00 | 45.15 | 1.52 |
1422 | 3566 | 1.475403 | TTCTTCCTCCTCGCGATCTT | 58.525 | 50.000 | 10.36 | 0.00 | 0.00 | 2.40 |
1427 | 3571 | 0.741326 | CCTCCTCGCGATCTTTCTGA | 59.259 | 55.000 | 10.36 | 0.00 | 0.00 | 3.27 |
1428 | 3572 | 1.268999 | CCTCCTCGCGATCTTTCTGAG | 60.269 | 57.143 | 10.36 | 7.14 | 0.00 | 3.35 |
1430 | 3574 | 0.741326 | CCTCGCGATCTTTCTGAGGA | 59.259 | 55.000 | 10.36 | 0.00 | 41.33 | 3.71 |
1456 | 3600 | 2.154462 | ACTTTTAGCTGTCGCATGCTT | 58.846 | 42.857 | 17.13 | 0.00 | 40.35 | 3.91 |
1458 | 3602 | 3.751175 | ACTTTTAGCTGTCGCATGCTTTA | 59.249 | 39.130 | 17.13 | 0.00 | 40.35 | 1.85 |
1473 | 3617 | 6.268566 | GCATGCTTTATTTTGCTAGCTTAGT | 58.731 | 36.000 | 17.23 | 3.22 | 34.77 | 2.24 |
1550 | 3699 | 2.636830 | CCTATCTGAACTGGCTTGTGG | 58.363 | 52.381 | 0.00 | 0.00 | 0.00 | 4.17 |
1618 | 3777 | 0.327924 | TTCGCCCCATGATGAACTGT | 59.672 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
1620 | 3779 | 0.107508 | CGCCCCATGATGAACTGTCT | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1622 | 3781 | 1.340405 | GCCCCATGATGAACTGTCTGT | 60.340 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
1635 | 3794 | 0.528901 | TGTCTGTTGACGGGTGTTCG | 60.529 | 55.000 | 0.00 | 0.00 | 45.70 | 3.95 |
1642 | 3801 | 3.218470 | ACGGGTGTTCGTCGTGGA | 61.218 | 61.111 | 0.00 | 0.00 | 39.34 | 4.02 |
1810 | 3970 | 5.324409 | AGCTGAAATGAAATGACCTTACCA | 58.676 | 37.500 | 0.00 | 0.00 | 0.00 | 3.25 |
1840 | 4000 | 4.663334 | GTTTTACTCCTGAAACCCTGGAT | 58.337 | 43.478 | 0.00 | 0.00 | 41.31 | 3.41 |
1920 | 4080 | 2.035961 | TGTTCCGCTATACTCTGCATCC | 59.964 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1940 | 4100 | 1.862806 | GAGTCCTGTTGCGTTCTGC | 59.137 | 57.895 | 0.00 | 0.00 | 46.70 | 4.26 |
1942 | 4102 | 0.679505 | AGTCCTGTTGCGTTCTGCTA | 59.320 | 50.000 | 0.00 | 0.00 | 46.63 | 3.49 |
1943 | 4103 | 1.071605 | GTCCTGTTGCGTTCTGCTAG | 58.928 | 55.000 | 0.00 | 0.00 | 46.63 | 3.42 |
1964 | 4124 | 5.344207 | AGTATGCGTTTTTCTTCACTGAC | 57.656 | 39.130 | 0.00 | 0.00 | 0.00 | 3.51 |
1996 | 4165 | 2.124529 | GGCCTGACCTAAGCAGCC | 60.125 | 66.667 | 0.00 | 0.00 | 34.51 | 4.85 |
1997 | 4166 | 2.671070 | GCCTGACCTAAGCAGCCA | 59.329 | 61.111 | 0.00 | 0.00 | 32.06 | 4.75 |
1998 | 4167 | 1.225704 | GCCTGACCTAAGCAGCCAT | 59.774 | 57.895 | 0.00 | 0.00 | 32.06 | 4.40 |
1999 | 4168 | 1.099879 | GCCTGACCTAAGCAGCCATG | 61.100 | 60.000 | 0.00 | 0.00 | 32.06 | 3.66 |
2000 | 4169 | 0.465097 | CCTGACCTAAGCAGCCATGG | 60.465 | 60.000 | 7.63 | 7.63 | 32.06 | 3.66 |
2001 | 4170 | 1.077501 | TGACCTAAGCAGCCATGGC | 60.078 | 57.895 | 30.12 | 30.12 | 42.33 | 4.40 |
2002 | 4171 | 1.077501 | GACCTAAGCAGCCATGGCA | 60.078 | 57.895 | 37.18 | 16.43 | 44.88 | 4.92 |
2003 | 4172 | 1.077212 | ACCTAAGCAGCCATGGCAG | 60.077 | 57.895 | 37.18 | 30.66 | 44.88 | 4.85 |
2061 | 4234 | 1.401905 | CTGCCACCTTTAATTCGCTCC | 59.598 | 52.381 | 0.00 | 0.00 | 0.00 | 4.70 |
2184 | 4358 | 2.280628 | GAACCCATCTCGTTGCTTAGG | 58.719 | 52.381 | 0.00 | 0.00 | 0.00 | 2.69 |
2185 | 4359 | 0.107654 | ACCCATCTCGTTGCTTAGGC | 60.108 | 55.000 | 0.00 | 0.00 | 39.26 | 3.93 |
2186 | 4360 | 0.179000 | CCCATCTCGTTGCTTAGGCT | 59.821 | 55.000 | 0.00 | 0.00 | 39.59 | 4.58 |
2187 | 4361 | 1.293924 | CCATCTCGTTGCTTAGGCTG | 58.706 | 55.000 | 0.00 | 0.00 | 39.59 | 4.85 |
2188 | 4362 | 1.293924 | CATCTCGTTGCTTAGGCTGG | 58.706 | 55.000 | 0.00 | 0.00 | 39.59 | 4.85 |
2189 | 4363 | 0.905357 | ATCTCGTTGCTTAGGCTGGT | 59.095 | 50.000 | 0.00 | 0.00 | 39.59 | 4.00 |
2190 | 4364 | 0.246635 | TCTCGTTGCTTAGGCTGGTC | 59.753 | 55.000 | 0.00 | 0.00 | 39.59 | 4.02 |
2191 | 4365 | 0.037326 | CTCGTTGCTTAGGCTGGTCA | 60.037 | 55.000 | 0.00 | 0.00 | 39.59 | 4.02 |
2192 | 4366 | 0.613260 | TCGTTGCTTAGGCTGGTCAT | 59.387 | 50.000 | 0.00 | 0.00 | 39.59 | 3.06 |
2193 | 4367 | 1.828595 | TCGTTGCTTAGGCTGGTCATA | 59.171 | 47.619 | 0.00 | 0.00 | 39.59 | 2.15 |
2194 | 4368 | 2.159099 | TCGTTGCTTAGGCTGGTCATAG | 60.159 | 50.000 | 0.00 | 0.00 | 39.59 | 2.23 |
2195 | 4369 | 2.418746 | CGTTGCTTAGGCTGGTCATAGT | 60.419 | 50.000 | 0.00 | 0.00 | 39.59 | 2.12 |
2196 | 4370 | 2.939103 | GTTGCTTAGGCTGGTCATAGTG | 59.061 | 50.000 | 0.00 | 0.00 | 39.59 | 2.74 |
2197 | 4371 | 1.486310 | TGCTTAGGCTGGTCATAGTGG | 59.514 | 52.381 | 0.00 | 0.00 | 39.59 | 4.00 |
2198 | 4372 | 1.202698 | GCTTAGGCTGGTCATAGTGGG | 60.203 | 57.143 | 0.00 | 0.00 | 35.22 | 4.61 |
2199 | 4373 | 2.398588 | CTTAGGCTGGTCATAGTGGGA | 58.601 | 52.381 | 0.00 | 0.00 | 0.00 | 4.37 |
2200 | 4374 | 2.088104 | TAGGCTGGTCATAGTGGGAG | 57.912 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2201 | 4375 | 0.043334 | AGGCTGGTCATAGTGGGAGT | 59.957 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2202 | 4376 | 1.291033 | AGGCTGGTCATAGTGGGAGTA | 59.709 | 52.381 | 0.00 | 0.00 | 0.00 | 2.59 |
2203 | 4377 | 2.116238 | GGCTGGTCATAGTGGGAGTAA | 58.884 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
2204 | 4378 | 2.706190 | GGCTGGTCATAGTGGGAGTAAT | 59.294 | 50.000 | 0.00 | 0.00 | 0.00 | 1.89 |
2205 | 4379 | 3.901844 | GGCTGGTCATAGTGGGAGTAATA | 59.098 | 47.826 | 0.00 | 0.00 | 0.00 | 0.98 |
2206 | 4380 | 4.532521 | GGCTGGTCATAGTGGGAGTAATAT | 59.467 | 45.833 | 0.00 | 0.00 | 0.00 | 1.28 |
2207 | 4381 | 5.720041 | GGCTGGTCATAGTGGGAGTAATATA | 59.280 | 44.000 | 0.00 | 0.00 | 0.00 | 0.86 |
2208 | 4382 | 6.127310 | GGCTGGTCATAGTGGGAGTAATATAG | 60.127 | 46.154 | 0.00 | 0.00 | 0.00 | 1.31 |
2209 | 4383 | 6.663953 | GCTGGTCATAGTGGGAGTAATATAGA | 59.336 | 42.308 | 0.00 | 0.00 | 0.00 | 1.98 |
2210 | 4384 | 7.343316 | GCTGGTCATAGTGGGAGTAATATAGAT | 59.657 | 40.741 | 0.00 | 0.00 | 0.00 | 1.98 |
2211 | 4385 | 9.922477 | CTGGTCATAGTGGGAGTAATATAGATA | 57.078 | 37.037 | 0.00 | 0.00 | 0.00 | 1.98 |
2212 | 4386 | 9.922477 | TGGTCATAGTGGGAGTAATATAGATAG | 57.078 | 37.037 | 0.00 | 0.00 | 0.00 | 2.08 |
2213 | 4387 | 9.924010 | GGTCATAGTGGGAGTAATATAGATAGT | 57.076 | 37.037 | 0.00 | 0.00 | 0.00 | 2.12 |
2233 | 4407 | 8.037758 | AGATAGTAACATAGATGCCACATAAGC | 58.962 | 37.037 | 0.00 | 0.00 | 0.00 | 3.09 |
2234 | 4408 | 5.928976 | AGTAACATAGATGCCACATAAGCA | 58.071 | 37.500 | 0.00 | 0.00 | 45.94 | 3.91 |
2235 | 4409 | 6.356556 | AGTAACATAGATGCCACATAAGCAA | 58.643 | 36.000 | 0.00 | 0.00 | 44.83 | 3.91 |
2236 | 4410 | 6.828273 | AGTAACATAGATGCCACATAAGCAAA | 59.172 | 34.615 | 0.00 | 0.00 | 44.83 | 3.68 |
2237 | 4411 | 6.528537 | AACATAGATGCCACATAAGCAAAA | 57.471 | 33.333 | 0.00 | 0.00 | 44.83 | 2.44 |
2238 | 4412 | 6.528537 | ACATAGATGCCACATAAGCAAAAA | 57.471 | 33.333 | 0.00 | 0.00 | 44.83 | 1.94 |
2239 | 4413 | 7.116075 | ACATAGATGCCACATAAGCAAAAAT | 57.884 | 32.000 | 0.00 | 0.00 | 44.83 | 1.82 |
2240 | 4414 | 6.982141 | ACATAGATGCCACATAAGCAAAAATG | 59.018 | 34.615 | 0.00 | 0.00 | 44.83 | 2.32 |
2241 | 4415 | 5.664294 | AGATGCCACATAAGCAAAAATGA | 57.336 | 34.783 | 0.00 | 0.00 | 44.83 | 2.57 |
2242 | 4416 | 6.229936 | AGATGCCACATAAGCAAAAATGAT | 57.770 | 33.333 | 0.00 | 0.00 | 44.83 | 2.45 |
2243 | 4417 | 6.046593 | AGATGCCACATAAGCAAAAATGATG | 58.953 | 36.000 | 0.00 | 0.00 | 44.83 | 3.07 |
2244 | 4418 | 5.402997 | TGCCACATAAGCAAAAATGATGA | 57.597 | 34.783 | 0.00 | 0.00 | 37.28 | 2.92 |
2245 | 4419 | 5.979993 | TGCCACATAAGCAAAAATGATGAT | 58.020 | 33.333 | 0.00 | 0.00 | 37.28 | 2.45 |
2246 | 4420 | 5.813157 | TGCCACATAAGCAAAAATGATGATG | 59.187 | 36.000 | 0.00 | 0.00 | 37.28 | 3.07 |
2247 | 4421 | 5.813672 | GCCACATAAGCAAAAATGATGATGT | 59.186 | 36.000 | 0.00 | 0.00 | 0.00 | 3.06 |
2248 | 4422 | 6.237996 | GCCACATAAGCAAAAATGATGATGTG | 60.238 | 38.462 | 14.69 | 14.69 | 41.53 | 3.21 |
2249 | 4423 | 7.229228 | CACATAAGCAAAAATGATGATGTGG | 57.771 | 36.000 | 14.08 | 0.34 | 39.34 | 4.17 |
2250 | 4424 | 5.813672 | ACATAAGCAAAAATGATGATGTGGC | 59.186 | 36.000 | 0.00 | 0.00 | 0.00 | 5.01 |
2251 | 4425 | 3.965379 | AGCAAAAATGATGATGTGGCA | 57.035 | 38.095 | 0.00 | 0.00 | 0.00 | 4.92 |
2252 | 4426 | 4.274602 | AGCAAAAATGATGATGTGGCAA | 57.725 | 36.364 | 0.00 | 0.00 | 0.00 | 4.52 |
2253 | 4427 | 4.250464 | AGCAAAAATGATGATGTGGCAAG | 58.750 | 39.130 | 0.00 | 0.00 | 0.00 | 4.01 |
2254 | 4428 | 3.998341 | GCAAAAATGATGATGTGGCAAGT | 59.002 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
2255 | 4429 | 5.047164 | AGCAAAAATGATGATGTGGCAAGTA | 60.047 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2256 | 4430 | 5.290158 | GCAAAAATGATGATGTGGCAAGTAG | 59.710 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2257 | 4431 | 6.392354 | CAAAAATGATGATGTGGCAAGTAGT | 58.608 | 36.000 | 0.00 | 0.00 | 0.00 | 2.73 |
2258 | 4432 | 6.594788 | AAAATGATGATGTGGCAAGTAGTT | 57.405 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
2259 | 4433 | 7.701539 | AAAATGATGATGTGGCAAGTAGTTA | 57.298 | 32.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2260 | 4434 | 7.701539 | AAATGATGATGTGGCAAGTAGTTAA | 57.298 | 32.000 | 0.00 | 0.00 | 0.00 | 2.01 |
2261 | 4435 | 7.886629 | AATGATGATGTGGCAAGTAGTTAAT | 57.113 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2262 | 4436 | 6.682423 | TGATGATGTGGCAAGTAGTTAATG | 57.318 | 37.500 | 0.00 | 0.00 | 0.00 | 1.90 |
2263 | 4437 | 6.413892 | TGATGATGTGGCAAGTAGTTAATGA | 58.586 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2264 | 4438 | 6.539826 | TGATGATGTGGCAAGTAGTTAATGAG | 59.460 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
2265 | 4439 | 5.185454 | TGATGTGGCAAGTAGTTAATGAGG | 58.815 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
2266 | 4440 | 4.901197 | TGTGGCAAGTAGTTAATGAGGA | 57.099 | 40.909 | 0.00 | 0.00 | 0.00 | 3.71 |
2267 | 4441 | 4.832248 | TGTGGCAAGTAGTTAATGAGGAG | 58.168 | 43.478 | 0.00 | 0.00 | 0.00 | 3.69 |
2268 | 4442 | 4.530553 | TGTGGCAAGTAGTTAATGAGGAGA | 59.469 | 41.667 | 0.00 | 0.00 | 0.00 | 3.71 |
2269 | 4443 | 5.112686 | GTGGCAAGTAGTTAATGAGGAGAG | 58.887 | 45.833 | 0.00 | 0.00 | 0.00 | 3.20 |
2270 | 4444 | 5.023452 | TGGCAAGTAGTTAATGAGGAGAGA | 58.977 | 41.667 | 0.00 | 0.00 | 0.00 | 3.10 |
2271 | 4445 | 5.127845 | TGGCAAGTAGTTAATGAGGAGAGAG | 59.872 | 44.000 | 0.00 | 0.00 | 0.00 | 3.20 |
2272 | 4446 | 5.452636 | GGCAAGTAGTTAATGAGGAGAGAGG | 60.453 | 48.000 | 0.00 | 0.00 | 0.00 | 3.69 |
2273 | 4447 | 5.596845 | CAAGTAGTTAATGAGGAGAGAGGC | 58.403 | 45.833 | 0.00 | 0.00 | 0.00 | 4.70 |
2274 | 4448 | 4.873010 | AGTAGTTAATGAGGAGAGAGGCA | 58.127 | 43.478 | 0.00 | 0.00 | 0.00 | 4.75 |
2275 | 4449 | 5.273208 | AGTAGTTAATGAGGAGAGAGGCAA | 58.727 | 41.667 | 0.00 | 0.00 | 0.00 | 4.52 |
2276 | 4450 | 5.721960 | AGTAGTTAATGAGGAGAGAGGCAAA | 59.278 | 40.000 | 0.00 | 0.00 | 0.00 | 3.68 |
2277 | 4451 | 5.707066 | AGTTAATGAGGAGAGAGGCAAAT | 57.293 | 39.130 | 0.00 | 0.00 | 0.00 | 2.32 |
2278 | 4452 | 6.814954 | AGTTAATGAGGAGAGAGGCAAATA | 57.185 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
2279 | 4453 | 6.825610 | AGTTAATGAGGAGAGAGGCAAATAG | 58.174 | 40.000 | 0.00 | 0.00 | 0.00 | 1.73 |
2280 | 4454 | 6.613271 | AGTTAATGAGGAGAGAGGCAAATAGA | 59.387 | 38.462 | 0.00 | 0.00 | 0.00 | 1.98 |
2281 | 4455 | 5.549742 | AATGAGGAGAGAGGCAAATAGAG | 57.450 | 43.478 | 0.00 | 0.00 | 0.00 | 2.43 |
2282 | 4456 | 3.987745 | TGAGGAGAGAGGCAAATAGAGT | 58.012 | 45.455 | 0.00 | 0.00 | 0.00 | 3.24 |
2283 | 4457 | 5.130705 | TGAGGAGAGAGGCAAATAGAGTA | 57.869 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
2284 | 4458 | 5.519808 | TGAGGAGAGAGGCAAATAGAGTAA | 58.480 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
2285 | 4459 | 5.361285 | TGAGGAGAGAGGCAAATAGAGTAAC | 59.639 | 44.000 | 0.00 | 0.00 | 0.00 | 2.50 |
2286 | 4460 | 5.273208 | AGGAGAGAGGCAAATAGAGTAACA | 58.727 | 41.667 | 0.00 | 0.00 | 0.00 | 2.41 |
2287 | 4461 | 5.902431 | AGGAGAGAGGCAAATAGAGTAACAT | 59.098 | 40.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2288 | 4462 | 7.069986 | AGGAGAGAGGCAAATAGAGTAACATA | 58.930 | 38.462 | 0.00 | 0.00 | 0.00 | 2.29 |
2289 | 4463 | 7.565398 | AGGAGAGAGGCAAATAGAGTAACATAA | 59.435 | 37.037 | 0.00 | 0.00 | 0.00 | 1.90 |
2290 | 4464 | 8.371699 | GGAGAGAGGCAAATAGAGTAACATAAT | 58.628 | 37.037 | 0.00 | 0.00 | 0.00 | 1.28 |
2309 | 4483 | 8.479313 | ACATAATATGTTACCATCACATAGCG | 57.521 | 34.615 | 0.00 | 0.00 | 41.63 | 4.26 |
2310 | 4484 | 7.549134 | ACATAATATGTTACCATCACATAGCGG | 59.451 | 37.037 | 0.00 | 0.00 | 41.63 | 5.52 |
2311 | 4485 | 3.838244 | ATGTTACCATCACATAGCGGT | 57.162 | 42.857 | 0.00 | 0.00 | 32.88 | 5.68 |
2312 | 4486 | 3.620427 | TGTTACCATCACATAGCGGTT | 57.380 | 42.857 | 0.00 | 0.00 | 32.81 | 4.44 |
2313 | 4487 | 3.945346 | TGTTACCATCACATAGCGGTTT | 58.055 | 40.909 | 0.00 | 0.00 | 32.81 | 3.27 |
2314 | 4488 | 3.936453 | TGTTACCATCACATAGCGGTTTC | 59.064 | 43.478 | 0.00 | 0.00 | 32.81 | 2.78 |
2315 | 4489 | 2.038387 | ACCATCACATAGCGGTTTCC | 57.962 | 50.000 | 0.00 | 0.00 | 0.00 | 3.13 |
2316 | 4490 | 1.280710 | ACCATCACATAGCGGTTTCCA | 59.719 | 47.619 | 0.00 | 0.00 | 0.00 | 3.53 |
2317 | 4491 | 2.290641 | ACCATCACATAGCGGTTTCCAA | 60.291 | 45.455 | 0.00 | 0.00 | 0.00 | 3.53 |
2318 | 4492 | 2.951642 | CCATCACATAGCGGTTTCCAAT | 59.048 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
2319 | 4493 | 3.243168 | CCATCACATAGCGGTTTCCAATG | 60.243 | 47.826 | 0.00 | 0.00 | 0.00 | 2.82 |
2320 | 4494 | 1.742831 | TCACATAGCGGTTTCCAATGC | 59.257 | 47.619 | 0.00 | 0.00 | 0.00 | 3.56 |
2321 | 4495 | 1.472082 | CACATAGCGGTTTCCAATGCA | 59.528 | 47.619 | 0.00 | 0.00 | 0.00 | 3.96 |
2322 | 4496 | 2.099592 | CACATAGCGGTTTCCAATGCAT | 59.900 | 45.455 | 0.00 | 0.00 | 0.00 | 3.96 |
2323 | 4497 | 3.314913 | CACATAGCGGTTTCCAATGCATA | 59.685 | 43.478 | 0.00 | 0.00 | 0.00 | 3.14 |
2324 | 4498 | 3.951037 | ACATAGCGGTTTCCAATGCATAA | 59.049 | 39.130 | 0.00 | 0.00 | 0.00 | 1.90 |
2325 | 4499 | 4.584325 | ACATAGCGGTTTCCAATGCATAAT | 59.416 | 37.500 | 0.00 | 0.00 | 0.00 | 1.28 |
2326 | 4500 | 3.441496 | AGCGGTTTCCAATGCATAATG | 57.559 | 42.857 | 0.00 | 0.00 | 0.00 | 1.90 |
2327 | 4501 | 3.023119 | AGCGGTTTCCAATGCATAATGA | 58.977 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
2328 | 4502 | 3.067180 | AGCGGTTTCCAATGCATAATGAG | 59.933 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
2329 | 4503 | 3.181487 | GCGGTTTCCAATGCATAATGAGT | 60.181 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
2330 | 4504 | 4.601019 | CGGTTTCCAATGCATAATGAGTC | 58.399 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
2331 | 4505 | 4.336433 | CGGTTTCCAATGCATAATGAGTCT | 59.664 | 41.667 | 0.00 | 0.00 | 0.00 | 3.24 |
2332 | 4506 | 5.527214 | CGGTTTCCAATGCATAATGAGTCTA | 59.473 | 40.000 | 0.00 | 0.00 | 0.00 | 2.59 |
2333 | 4507 | 6.511767 | CGGTTTCCAATGCATAATGAGTCTAC | 60.512 | 42.308 | 0.00 | 0.00 | 0.00 | 2.59 |
2334 | 4508 | 6.318648 | GGTTTCCAATGCATAATGAGTCTACA | 59.681 | 38.462 | 0.00 | 0.00 | 0.00 | 2.74 |
2335 | 4509 | 7.148086 | GGTTTCCAATGCATAATGAGTCTACAA | 60.148 | 37.037 | 0.00 | 0.00 | 0.00 | 2.41 |
2336 | 4510 | 7.936496 | TTCCAATGCATAATGAGTCTACAAA | 57.064 | 32.000 | 0.00 | 0.00 | 0.00 | 2.83 |
2337 | 4511 | 7.558161 | TCCAATGCATAATGAGTCTACAAAG | 57.442 | 36.000 | 0.00 | 0.00 | 0.00 | 2.77 |
2338 | 4512 | 7.112122 | TCCAATGCATAATGAGTCTACAAAGT | 58.888 | 34.615 | 0.00 | 0.00 | 0.00 | 2.66 |
2339 | 4513 | 8.264347 | TCCAATGCATAATGAGTCTACAAAGTA | 58.736 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
2340 | 4514 | 8.892723 | CCAATGCATAATGAGTCTACAAAGTAA | 58.107 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
2351 | 4525 | 9.162764 | TGAGTCTACAAAGTAATAAATGAAGGC | 57.837 | 33.333 | 0.00 | 0.00 | 0.00 | 4.35 |
2352 | 4526 | 9.162764 | GAGTCTACAAAGTAATAAATGAAGGCA | 57.837 | 33.333 | 0.00 | 0.00 | 0.00 | 4.75 |
2353 | 4527 | 9.515226 | AGTCTACAAAGTAATAAATGAAGGCAA | 57.485 | 29.630 | 0.00 | 0.00 | 0.00 | 4.52 |
2354 | 4528 | 9.556030 | GTCTACAAAGTAATAAATGAAGGCAAC | 57.444 | 33.333 | 0.00 | 0.00 | 0.00 | 4.17 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
7 | 8 | 1.815840 | GCCTCCCTCGTAGCAAAGC | 60.816 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
17 | 18 | 1.599576 | GTCTCACTTGGCCTCCCTC | 59.400 | 63.158 | 3.32 | 0.00 | 0.00 | 4.30 |
20 | 21 | 0.322008 | CTTGGTCTCACTTGGCCTCC | 60.322 | 60.000 | 3.32 | 0.00 | 0.00 | 4.30 |
31 | 32 | 0.741221 | CAAGCGGTAGCCTTGGTCTC | 60.741 | 60.000 | 12.59 | 0.00 | 46.67 | 3.36 |
32 | 33 | 1.296715 | CAAGCGGTAGCCTTGGTCT | 59.703 | 57.895 | 12.59 | 0.00 | 46.67 | 3.85 |
35 | 36 | 1.450312 | CTCCAAGCGGTAGCCTTGG | 60.450 | 63.158 | 24.70 | 24.70 | 46.67 | 3.61 |
37 | 38 | 1.296715 | CACTCCAAGCGGTAGCCTT | 59.703 | 57.895 | 0.00 | 0.00 | 46.67 | 4.35 |
45 | 46 | 2.664851 | TTGCGTCCACTCCAAGCG | 60.665 | 61.111 | 0.00 | 0.00 | 0.00 | 4.68 |
49 | 50 | 0.531974 | GTCTTGTTGCGTCCACTCCA | 60.532 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
54 | 55 | 1.525077 | GGGTGTCTTGTTGCGTCCA | 60.525 | 57.895 | 0.00 | 0.00 | 0.00 | 4.02 |
62 | 63 | 2.371841 | TGCTGTATTGAGGGTGTCTTGT | 59.628 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
79 | 80 | 1.413767 | CGATTCCCGACGTCTTGCTG | 61.414 | 60.000 | 14.70 | 0.00 | 41.76 | 4.41 |
102 | 103 | 4.570663 | CGGCATCCCCTCGACGAC | 62.571 | 72.222 | 0.00 | 0.00 | 0.00 | 4.34 |
119 | 120 | 0.394352 | CTTGGTCCAGTGGGTATGGC | 60.394 | 60.000 | 9.92 | 0.00 | 37.76 | 4.40 |
124 | 125 | 0.540365 | CATTGCTTGGTCCAGTGGGT | 60.540 | 55.000 | 9.92 | 0.00 | 34.93 | 4.51 |
144 | 145 | 1.029681 | ATCATAGTGTAGCGGCGACA | 58.970 | 50.000 | 12.98 | 12.00 | 0.00 | 4.35 |
156 | 157 | 4.078922 | TCAACTCCTCTCCTCCATCATAGT | 60.079 | 45.833 | 0.00 | 0.00 | 0.00 | 2.12 |
158 | 159 | 4.542906 | TCAACTCCTCTCCTCCATCATA | 57.457 | 45.455 | 0.00 | 0.00 | 0.00 | 2.15 |
163 | 164 | 2.573462 | CCATTTCAACTCCTCTCCTCCA | 59.427 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
230 | 231 | 0.036164 | ATGCGTTGTGGCTCTTACCA | 59.964 | 50.000 | 0.00 | 0.00 | 37.38 | 3.25 |
259 | 260 | 4.688419 | TCGAACGACGGTGGCGAC | 62.688 | 66.667 | 0.00 | 0.00 | 42.82 | 5.19 |
260 | 261 | 4.688419 | GTCGAACGACGGTGGCGA | 62.688 | 66.667 | 11.38 | 0.00 | 42.82 | 5.54 |
279 | 280 | 4.141937 | ACATCATAAAGAGCTAAGCACGGA | 60.142 | 41.667 | 0.00 | 0.00 | 0.00 | 4.69 |
283 | 284 | 6.179756 | TCCAAACATCATAAAGAGCTAAGCA | 58.820 | 36.000 | 0.00 | 0.00 | 0.00 | 3.91 |
319 | 320 | 1.535462 | CTTGGACCGCGAAAATGAACT | 59.465 | 47.619 | 8.23 | 0.00 | 0.00 | 3.01 |
339 | 340 | 7.609760 | TGGATAATATCGCCATACAATGTTC | 57.390 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
350 | 351 | 4.051922 | CCTCGCTAATGGATAATATCGCC | 58.948 | 47.826 | 0.00 | 0.00 | 0.00 | 5.54 |
414 | 415 | 6.596869 | TTCCAGATAGGGGAAAATCATCTT | 57.403 | 37.500 | 0.00 | 0.00 | 41.30 | 2.40 |
453 | 515 | 9.442062 | TTCCTACCAATCATATAGTGTTCCTTA | 57.558 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
477 | 539 | 8.465201 | AGATTGCCAGAATTCAGAATAACTTTC | 58.535 | 33.333 | 8.44 | 0.00 | 0.00 | 2.62 |
582 | 777 | 6.769822 | ACCTGGCTACAATTATCTCTTGATTG | 59.230 | 38.462 | 0.00 | 0.00 | 36.95 | 2.67 |
600 | 795 | 0.622665 | CATTCTCCCTGAACCTGGCT | 59.377 | 55.000 | 0.00 | 0.00 | 37.52 | 4.75 |
605 | 800 | 1.065126 | CCTCCACATTCTCCCTGAACC | 60.065 | 57.143 | 0.00 | 0.00 | 37.52 | 3.62 |
624 | 819 | 2.674796 | TTCTCCTAAAGAAGCTCGCC | 57.325 | 50.000 | 0.00 | 0.00 | 39.12 | 5.54 |
663 | 862 | 1.893919 | GCACCTCTCTCCACTGGTCC | 61.894 | 65.000 | 0.00 | 0.00 | 0.00 | 4.46 |
779 | 981 | 2.158885 | GCAAGGGATCTCTCCAGGTAAC | 60.159 | 54.545 | 0.00 | 0.00 | 44.08 | 2.50 |
793 | 995 | 2.025793 | TGAAATTACATCCGGCAAGGGA | 60.026 | 45.455 | 0.00 | 0.00 | 41.52 | 4.20 |
999 | 1203 | 2.357154 | GCAACCCACTATCCTCCACATT | 60.357 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
1010 | 1214 | 1.752683 | ACACAAAACGCAACCCACTA | 58.247 | 45.000 | 0.00 | 0.00 | 0.00 | 2.74 |
1017 | 1221 | 5.294799 | ACAACTATCTGTACACAAAACGCAA | 59.705 | 36.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1027 | 1231 | 3.423749 | TGTCCGGACAACTATCTGTACA | 58.576 | 45.455 | 34.60 | 7.29 | 38.56 | 2.90 |
1045 | 2099 | 7.489113 | CCAAATAAAGTATTGCCACAGATTGTC | 59.511 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
1066 | 2120 | 7.405292 | TCAGGAAGATAGAAATGACACCAAAT | 58.595 | 34.615 | 0.00 | 0.00 | 0.00 | 2.32 |
1067 | 2121 | 6.778821 | TCAGGAAGATAGAAATGACACCAAA | 58.221 | 36.000 | 0.00 | 0.00 | 0.00 | 3.28 |
1079 | 2133 | 3.181413 | CCTCTCCCCATCAGGAAGATAGA | 60.181 | 52.174 | 0.00 | 0.00 | 38.24 | 1.98 |
1195 | 2434 | 3.141398 | CACAAGCAGAGTACACCACATT | 58.859 | 45.455 | 0.00 | 0.00 | 0.00 | 2.71 |
1300 | 2979 | 4.431809 | CAGATTCTCATCAAGCTCGAAGT | 58.568 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
1309 | 2988 | 2.160219 | GTGCAACGCAGATTCTCATCAA | 59.840 | 45.455 | 0.00 | 0.00 | 40.08 | 2.57 |
1325 | 3004 | 4.733371 | TCGCATCGCTCGGTGCAA | 62.733 | 61.111 | 24.43 | 6.18 | 41.32 | 4.08 |
1370 | 3090 | 1.135402 | CCCGTTAAAAGCCATCTGCAC | 60.135 | 52.381 | 0.00 | 0.00 | 44.83 | 4.57 |
1402 | 3128 | 1.475403 | AGATCGCGAGGAGGAAGAAA | 58.525 | 50.000 | 16.66 | 0.00 | 0.00 | 2.52 |
1422 | 3566 | 5.702670 | CAGCTAAAAGTCATTGTCCTCAGAA | 59.297 | 40.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1427 | 3571 | 3.997021 | CGACAGCTAAAAGTCATTGTCCT | 59.003 | 43.478 | 3.18 | 0.00 | 34.48 | 3.85 |
1428 | 3572 | 3.424962 | GCGACAGCTAAAAGTCATTGTCC | 60.425 | 47.826 | 3.18 | 0.00 | 41.01 | 4.02 |
1430 | 3574 | 3.138304 | TGCGACAGCTAAAAGTCATTGT | 58.862 | 40.909 | 3.18 | 0.00 | 45.42 | 2.71 |
1473 | 3617 | 5.997843 | TCACAGACAGCCATACTACTAGTA | 58.002 | 41.667 | 1.89 | 1.89 | 34.82 | 1.82 |
1550 | 3699 | 5.856455 | CCAACATCTAAACCGTTCAAATCAC | 59.144 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
1618 | 3777 | 1.817881 | ACGAACACCCGTCAACAGA | 59.182 | 52.632 | 0.00 | 0.00 | 38.56 | 3.41 |
1635 | 3794 | 2.159517 | GCATCACTGGAAAATCCACGAC | 60.160 | 50.000 | 0.00 | 0.00 | 42.67 | 4.34 |
1642 | 3801 | 3.056322 | GGCTCAAAGCATCACTGGAAAAT | 60.056 | 43.478 | 0.86 | 0.00 | 44.75 | 1.82 |
1657 | 3816 | 2.366153 | AAAGGGGAAGCGGGCTCAAA | 62.366 | 55.000 | 0.00 | 0.00 | 0.00 | 2.69 |
1805 | 3965 | 3.502979 | GGAGTAAAACGCACCATTGGTAA | 59.497 | 43.478 | 8.31 | 0.00 | 32.11 | 2.85 |
1806 | 3966 | 3.075884 | GGAGTAAAACGCACCATTGGTA | 58.924 | 45.455 | 8.31 | 0.00 | 32.11 | 3.25 |
1807 | 3967 | 1.883926 | GGAGTAAAACGCACCATTGGT | 59.116 | 47.619 | 1.37 | 1.37 | 35.62 | 3.67 |
1810 | 3970 | 3.134574 | TCAGGAGTAAAACGCACCATT | 57.865 | 42.857 | 0.00 | 0.00 | 0.00 | 3.16 |
1885 | 4045 | 1.128692 | CGGAACAGAAATGTCGGCTTC | 59.871 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
1887 | 4047 | 1.298859 | GCGGAACAGAAATGTCGGCT | 61.299 | 55.000 | 0.00 | 0.00 | 0.00 | 5.52 |
1920 | 4080 | 1.006102 | AGAACGCAACAGGACTCGG | 60.006 | 57.895 | 0.00 | 0.00 | 0.00 | 4.63 |
1940 | 4100 | 6.401153 | GGTCAGTGAAGAAAAACGCATACTAG | 60.401 | 42.308 | 0.00 | 0.00 | 0.00 | 2.57 |
1942 | 4102 | 4.213482 | GGTCAGTGAAGAAAAACGCATACT | 59.787 | 41.667 | 0.00 | 0.00 | 0.00 | 2.12 |
1943 | 4103 | 4.464112 | GGTCAGTGAAGAAAAACGCATAC | 58.536 | 43.478 | 0.00 | 0.00 | 0.00 | 2.39 |
2000 | 4169 | 0.979665 | TAGGATGGATGGCTAGCTGC | 59.020 | 55.000 | 15.72 | 1.06 | 41.94 | 5.25 |
2001 | 4170 | 3.106054 | AGATAGGATGGATGGCTAGCTG | 58.894 | 50.000 | 15.72 | 0.00 | 0.00 | 4.24 |
2002 | 4171 | 3.488355 | AGATAGGATGGATGGCTAGCT | 57.512 | 47.619 | 15.72 | 0.00 | 0.00 | 3.32 |
2003 | 4172 | 3.386402 | GGTAGATAGGATGGATGGCTAGC | 59.614 | 52.174 | 6.04 | 6.04 | 0.00 | 3.42 |
2004 | 4173 | 3.964031 | GGGTAGATAGGATGGATGGCTAG | 59.036 | 52.174 | 0.00 | 0.00 | 0.00 | 3.42 |
2184 | 4358 | 5.746990 | ATATTACTCCCACTATGACCAGC | 57.253 | 43.478 | 0.00 | 0.00 | 0.00 | 4.85 |
2185 | 4359 | 8.830915 | ATCTATATTACTCCCACTATGACCAG | 57.169 | 38.462 | 0.00 | 0.00 | 0.00 | 4.00 |
2186 | 4360 | 9.922477 | CTATCTATATTACTCCCACTATGACCA | 57.078 | 37.037 | 0.00 | 0.00 | 0.00 | 4.02 |
2187 | 4361 | 9.924010 | ACTATCTATATTACTCCCACTATGACC | 57.076 | 37.037 | 0.00 | 0.00 | 0.00 | 4.02 |
2207 | 4381 | 8.037758 | GCTTATGTGGCATCTATGTTACTATCT | 58.962 | 37.037 | 0.00 | 0.00 | 0.00 | 1.98 |
2208 | 4382 | 7.819415 | TGCTTATGTGGCATCTATGTTACTATC | 59.181 | 37.037 | 0.00 | 0.00 | 34.56 | 2.08 |
2209 | 4383 | 7.679783 | TGCTTATGTGGCATCTATGTTACTAT | 58.320 | 34.615 | 0.00 | 0.00 | 34.56 | 2.12 |
2210 | 4384 | 7.061566 | TGCTTATGTGGCATCTATGTTACTA | 57.938 | 36.000 | 0.00 | 0.00 | 34.56 | 1.82 |
2211 | 4385 | 5.928976 | TGCTTATGTGGCATCTATGTTACT | 58.071 | 37.500 | 0.00 | 0.00 | 34.56 | 2.24 |
2212 | 4386 | 6.618287 | TTGCTTATGTGGCATCTATGTTAC | 57.382 | 37.500 | 0.00 | 0.00 | 39.54 | 2.50 |
2213 | 4387 | 7.637631 | TTTTGCTTATGTGGCATCTATGTTA | 57.362 | 32.000 | 0.00 | 0.00 | 39.54 | 2.41 |
2214 | 4388 | 6.528537 | TTTTGCTTATGTGGCATCTATGTT | 57.471 | 33.333 | 0.00 | 0.00 | 39.54 | 2.71 |
2215 | 4389 | 6.528537 | TTTTTGCTTATGTGGCATCTATGT | 57.471 | 33.333 | 0.00 | 0.00 | 39.54 | 2.29 |
2216 | 4390 | 7.204604 | TCATTTTTGCTTATGTGGCATCTATG | 58.795 | 34.615 | 0.00 | 0.00 | 39.54 | 2.23 |
2217 | 4391 | 7.350744 | TCATTTTTGCTTATGTGGCATCTAT | 57.649 | 32.000 | 0.00 | 0.00 | 39.54 | 1.98 |
2218 | 4392 | 6.772360 | TCATTTTTGCTTATGTGGCATCTA | 57.228 | 33.333 | 0.00 | 0.00 | 39.54 | 1.98 |
2219 | 4393 | 5.664294 | TCATTTTTGCTTATGTGGCATCT | 57.336 | 34.783 | 0.00 | 0.00 | 39.54 | 2.90 |
2220 | 4394 | 6.044046 | TCATCATTTTTGCTTATGTGGCATC | 58.956 | 36.000 | 0.00 | 0.00 | 39.54 | 3.91 |
2221 | 4395 | 5.979993 | TCATCATTTTTGCTTATGTGGCAT | 58.020 | 33.333 | 0.00 | 0.00 | 39.54 | 4.40 |
2222 | 4396 | 5.402997 | TCATCATTTTTGCTTATGTGGCA | 57.597 | 34.783 | 0.00 | 0.00 | 37.97 | 4.92 |
2223 | 4397 | 5.813672 | ACATCATCATTTTTGCTTATGTGGC | 59.186 | 36.000 | 0.00 | 0.00 | 0.00 | 5.01 |
2224 | 4398 | 7.229228 | CACATCATCATTTTTGCTTATGTGG | 57.771 | 36.000 | 0.00 | 0.00 | 39.34 | 4.17 |
2225 | 4399 | 6.237996 | GCCACATCATCATTTTTGCTTATGTG | 60.238 | 38.462 | 0.00 | 0.00 | 41.50 | 3.21 |
2226 | 4400 | 5.813672 | GCCACATCATCATTTTTGCTTATGT | 59.186 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2227 | 4401 | 5.813157 | TGCCACATCATCATTTTTGCTTATG | 59.187 | 36.000 | 0.00 | 0.00 | 0.00 | 1.90 |
2228 | 4402 | 5.979993 | TGCCACATCATCATTTTTGCTTAT | 58.020 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
2229 | 4403 | 5.402997 | TGCCACATCATCATTTTTGCTTA | 57.597 | 34.783 | 0.00 | 0.00 | 0.00 | 3.09 |
2230 | 4404 | 4.274602 | TGCCACATCATCATTTTTGCTT | 57.725 | 36.364 | 0.00 | 0.00 | 0.00 | 3.91 |
2231 | 4405 | 3.965379 | TGCCACATCATCATTTTTGCT | 57.035 | 38.095 | 0.00 | 0.00 | 0.00 | 3.91 |
2232 | 4406 | 3.998341 | ACTTGCCACATCATCATTTTTGC | 59.002 | 39.130 | 0.00 | 0.00 | 0.00 | 3.68 |
2233 | 4407 | 6.392354 | ACTACTTGCCACATCATCATTTTTG | 58.608 | 36.000 | 0.00 | 0.00 | 0.00 | 2.44 |
2234 | 4408 | 6.594788 | ACTACTTGCCACATCATCATTTTT | 57.405 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
2235 | 4409 | 6.594788 | AACTACTTGCCACATCATCATTTT | 57.405 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
2236 | 4410 | 7.701539 | TTAACTACTTGCCACATCATCATTT | 57.298 | 32.000 | 0.00 | 0.00 | 0.00 | 2.32 |
2237 | 4411 | 7.557358 | TCATTAACTACTTGCCACATCATCATT | 59.443 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
2238 | 4412 | 7.056006 | TCATTAACTACTTGCCACATCATCAT | 58.944 | 34.615 | 0.00 | 0.00 | 0.00 | 2.45 |
2239 | 4413 | 6.413892 | TCATTAACTACTTGCCACATCATCA | 58.586 | 36.000 | 0.00 | 0.00 | 0.00 | 3.07 |
2240 | 4414 | 6.017605 | CCTCATTAACTACTTGCCACATCATC | 60.018 | 42.308 | 0.00 | 0.00 | 0.00 | 2.92 |
2241 | 4415 | 5.824624 | CCTCATTAACTACTTGCCACATCAT | 59.175 | 40.000 | 0.00 | 0.00 | 0.00 | 2.45 |
2242 | 4416 | 5.045942 | TCCTCATTAACTACTTGCCACATCA | 60.046 | 40.000 | 0.00 | 0.00 | 0.00 | 3.07 |
2243 | 4417 | 5.428253 | TCCTCATTAACTACTTGCCACATC | 58.572 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
2244 | 4418 | 5.189736 | TCTCCTCATTAACTACTTGCCACAT | 59.810 | 40.000 | 0.00 | 0.00 | 0.00 | 3.21 |
2245 | 4419 | 4.530553 | TCTCCTCATTAACTACTTGCCACA | 59.469 | 41.667 | 0.00 | 0.00 | 0.00 | 4.17 |
2246 | 4420 | 5.086104 | TCTCCTCATTAACTACTTGCCAC | 57.914 | 43.478 | 0.00 | 0.00 | 0.00 | 5.01 |
2247 | 4421 | 5.023452 | TCTCTCCTCATTAACTACTTGCCA | 58.977 | 41.667 | 0.00 | 0.00 | 0.00 | 4.92 |
2248 | 4422 | 5.452636 | CCTCTCTCCTCATTAACTACTTGCC | 60.453 | 48.000 | 0.00 | 0.00 | 0.00 | 4.52 |
2249 | 4423 | 5.596845 | CCTCTCTCCTCATTAACTACTTGC | 58.403 | 45.833 | 0.00 | 0.00 | 0.00 | 4.01 |
2250 | 4424 | 5.127845 | TGCCTCTCTCCTCATTAACTACTTG | 59.872 | 44.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2251 | 4425 | 5.273208 | TGCCTCTCTCCTCATTAACTACTT | 58.727 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
2252 | 4426 | 4.873010 | TGCCTCTCTCCTCATTAACTACT | 58.127 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
2253 | 4427 | 5.599999 | TTGCCTCTCTCCTCATTAACTAC | 57.400 | 43.478 | 0.00 | 0.00 | 0.00 | 2.73 |
2254 | 4428 | 6.814954 | ATTTGCCTCTCTCCTCATTAACTA | 57.185 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
2255 | 4429 | 5.707066 | ATTTGCCTCTCTCCTCATTAACT | 57.293 | 39.130 | 0.00 | 0.00 | 0.00 | 2.24 |
2256 | 4430 | 6.821388 | TCTATTTGCCTCTCTCCTCATTAAC | 58.179 | 40.000 | 0.00 | 0.00 | 0.00 | 2.01 |
2257 | 4431 | 6.613271 | ACTCTATTTGCCTCTCTCCTCATTAA | 59.387 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
2258 | 4432 | 6.139671 | ACTCTATTTGCCTCTCTCCTCATTA | 58.860 | 40.000 | 0.00 | 0.00 | 0.00 | 1.90 |
2259 | 4433 | 4.968080 | ACTCTATTTGCCTCTCTCCTCATT | 59.032 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
2260 | 4434 | 4.555689 | ACTCTATTTGCCTCTCTCCTCAT | 58.444 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
2261 | 4435 | 3.987745 | ACTCTATTTGCCTCTCTCCTCA | 58.012 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
2262 | 4436 | 5.361285 | TGTTACTCTATTTGCCTCTCTCCTC | 59.639 | 44.000 | 0.00 | 0.00 | 0.00 | 3.71 |
2263 | 4437 | 5.273208 | TGTTACTCTATTTGCCTCTCTCCT | 58.727 | 41.667 | 0.00 | 0.00 | 0.00 | 3.69 |
2264 | 4438 | 5.599999 | TGTTACTCTATTTGCCTCTCTCC | 57.400 | 43.478 | 0.00 | 0.00 | 0.00 | 3.71 |
2293 | 4467 | 3.311596 | GGAAACCGCTATGTGATGGTAAC | 59.688 | 47.826 | 0.00 | 0.00 | 33.45 | 2.50 |
2294 | 4468 | 3.055021 | TGGAAACCGCTATGTGATGGTAA | 60.055 | 43.478 | 0.00 | 0.00 | 33.45 | 2.85 |
2295 | 4469 | 2.502130 | TGGAAACCGCTATGTGATGGTA | 59.498 | 45.455 | 0.00 | 0.00 | 33.45 | 3.25 |
2296 | 4470 | 1.280710 | TGGAAACCGCTATGTGATGGT | 59.719 | 47.619 | 0.00 | 0.00 | 35.90 | 3.55 |
2297 | 4471 | 2.036958 | TGGAAACCGCTATGTGATGG | 57.963 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2298 | 4472 | 3.793129 | GCATTGGAAACCGCTATGTGATG | 60.793 | 47.826 | 0.00 | 0.00 | 0.00 | 3.07 |
2299 | 4473 | 2.358898 | GCATTGGAAACCGCTATGTGAT | 59.641 | 45.455 | 0.00 | 0.00 | 0.00 | 3.06 |
2300 | 4474 | 1.742831 | GCATTGGAAACCGCTATGTGA | 59.257 | 47.619 | 0.00 | 0.00 | 0.00 | 3.58 |
2301 | 4475 | 1.472082 | TGCATTGGAAACCGCTATGTG | 59.528 | 47.619 | 0.00 | 0.00 | 0.00 | 3.21 |
2302 | 4476 | 1.832883 | TGCATTGGAAACCGCTATGT | 58.167 | 45.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2303 | 4477 | 4.566545 | TTATGCATTGGAAACCGCTATG | 57.433 | 40.909 | 3.54 | 0.00 | 0.00 | 2.23 |
2304 | 4478 | 4.826733 | TCATTATGCATTGGAAACCGCTAT | 59.173 | 37.500 | 3.54 | 0.00 | 0.00 | 2.97 |
2305 | 4479 | 4.203226 | TCATTATGCATTGGAAACCGCTA | 58.797 | 39.130 | 3.54 | 0.00 | 0.00 | 4.26 |
2306 | 4480 | 3.023119 | TCATTATGCATTGGAAACCGCT | 58.977 | 40.909 | 3.54 | 0.00 | 0.00 | 5.52 |
2307 | 4481 | 3.181487 | ACTCATTATGCATTGGAAACCGC | 60.181 | 43.478 | 3.54 | 0.00 | 0.00 | 5.68 |
2308 | 4482 | 4.336433 | AGACTCATTATGCATTGGAAACCG | 59.664 | 41.667 | 3.54 | 0.00 | 0.00 | 4.44 |
2309 | 4483 | 5.841957 | AGACTCATTATGCATTGGAAACC | 57.158 | 39.130 | 3.54 | 0.00 | 0.00 | 3.27 |
2310 | 4484 | 7.320443 | TGTAGACTCATTATGCATTGGAAAC | 57.680 | 36.000 | 3.54 | 0.00 | 0.00 | 2.78 |
2311 | 4485 | 7.936496 | TTGTAGACTCATTATGCATTGGAAA | 57.064 | 32.000 | 3.54 | 0.00 | 0.00 | 3.13 |
2312 | 4486 | 7.611467 | ACTTTGTAGACTCATTATGCATTGGAA | 59.389 | 33.333 | 3.54 | 0.00 | 0.00 | 3.53 |
2313 | 4487 | 7.112122 | ACTTTGTAGACTCATTATGCATTGGA | 58.888 | 34.615 | 3.54 | 0.00 | 0.00 | 3.53 |
2314 | 4488 | 7.325660 | ACTTTGTAGACTCATTATGCATTGG | 57.674 | 36.000 | 3.54 | 0.00 | 0.00 | 3.16 |
2325 | 4499 | 9.162764 | GCCTTCATTTATTACTTTGTAGACTCA | 57.837 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
2326 | 4500 | 9.162764 | TGCCTTCATTTATTACTTTGTAGACTC | 57.837 | 33.333 | 0.00 | 0.00 | 0.00 | 3.36 |
2327 | 4501 | 9.515226 | TTGCCTTCATTTATTACTTTGTAGACT | 57.485 | 29.630 | 0.00 | 0.00 | 0.00 | 3.24 |
2328 | 4502 | 9.556030 | GTTGCCTTCATTTATTACTTTGTAGAC | 57.444 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
2329 | 4503 | 9.515226 | AGTTGCCTTCATTTATTACTTTGTAGA | 57.485 | 29.630 | 0.00 | 0.00 | 0.00 | 2.59 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.