Multiple sequence alignment - TraesCS1A01G211500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G211500 chr1A 100.000 5525 0 0 1 5525 374212945 374218469 0.000000e+00 10203.0
1 TraesCS1A01G211500 chr1A 97.151 351 10 0 1 351 56967734 56968084 1.330000e-165 593.0
2 TraesCS1A01G211500 chr1A 96.866 351 11 0 1 351 314416969 314417319 6.170000e-164 588.0
3 TraesCS1A01G211500 chr1B 90.406 3544 199 67 1071 4593 404512103 404515526 0.000000e+00 4530.0
4 TraesCS1A01G211500 chr1B 86.566 923 81 16 4624 5525 404515524 404516424 0.000000e+00 977.0
5 TraesCS1A01G211500 chr1B 89.619 289 20 4 789 1076 404511782 404512061 5.260000e-95 359.0
6 TraesCS1A01G211500 chr1B 85.075 201 16 7 603 801 404509932 404510120 5.650000e-45 193.0
7 TraesCS1A01G211500 chr1B 90.066 151 7 1 604 754 404509335 404509477 7.310000e-44 189.0
8 TraesCS1A01G211500 chr1B 92.647 68 5 0 354 421 404507213 404507280 1.270000e-16 99.0
9 TraesCS1A01G211500 chr1D 92.826 1840 90 17 2757 4584 299928291 299930100 0.000000e+00 2628.0
10 TraesCS1A01G211500 chr1D 84.350 2409 126 90 416 2758 299925985 299928208 0.000000e+00 2128.0
11 TraesCS1A01G211500 chr1D 90.315 888 57 10 4639 5499 299930127 299931012 0.000000e+00 1136.0
12 TraesCS1A01G211500 chr1D 97.151 351 10 0 1 351 298631570 298631220 1.330000e-165 593.0
13 TraesCS1A01G211500 chr1D 86.364 88 7 5 416 500 182699754 182699669 2.120000e-14 91.6
14 TraesCS1A01G211500 chr7A 97.167 353 9 1 1 353 526164608 526164959 3.680000e-166 595.0
15 TraesCS1A01G211500 chr3D 97.151 351 10 0 1 351 300802472 300802822 1.330000e-165 593.0
16 TraesCS1A01G211500 chr3D 96.122 361 13 1 1 361 300809240 300809599 6.170000e-164 588.0
17 TraesCS1A01G211500 chr3D 96.866 351 11 0 1 351 337915492 337915842 6.170000e-164 588.0
18 TraesCS1A01G211500 chr3D 82.222 90 11 4 424 512 523440580 523440665 7.680000e-09 73.1
19 TraesCS1A01G211500 chr4A 96.620 355 12 0 1 355 577630055 577629701 1.710000e-164 590.0
20 TraesCS1A01G211500 chr3A 96.866 351 10 1 1 351 20349296 20349645 2.220000e-163 586.0
21 TraesCS1A01G211500 chr2D 86.624 157 17 4 1471 1625 524144890 524145044 2.650000e-38 171.0
22 TraesCS1A01G211500 chr2B 85.350 157 19 4 1471 1625 619749392 619749546 5.730000e-35 159.0
23 TraesCS1A01G211500 chr2A 85.350 157 19 4 1471 1625 669841286 669841440 5.730000e-35 159.0
24 TraesCS1A01G211500 chr4B 93.103 58 4 0 426 483 563202663 563202606 9.860000e-13 86.1
25 TraesCS1A01G211500 chr5A 82.418 91 14 2 421 511 42256282 42256194 1.650000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G211500 chr1A 374212945 374218469 5524 False 10203.000000 10203 100.000000 1 5525 1 chr1A.!!$F3 5524
1 TraesCS1A01G211500 chr1B 404507213 404516424 9211 False 1057.833333 4530 89.063167 354 5525 6 chr1B.!!$F1 5171
2 TraesCS1A01G211500 chr1D 299925985 299931012 5027 False 1964.000000 2628 89.163667 416 5499 3 chr1D.!!$F1 5083

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
784 3273 0.309302 CGCAGACTCGCAGCTAGTAT 59.691 55.0 0.00 0.00 0.00 2.12 F
1932 6160 0.615331 CGGGCCACCTGCAGATATAT 59.385 55.0 17.39 0.00 43.89 0.86 F
2461 6712 0.036164 TTCTGATGGTGGTGAACGGG 59.964 55.0 0.00 0.00 0.00 5.28 F
3572 7941 0.615331 ACAGCGTGATCACATTCCCT 59.385 50.0 24.93 9.81 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2444 6695 0.036164 TTCCCGTTCACCACCATCAG 59.964 55.000 0.0 0.0 0.00 2.90 R
3841 8212 0.385751 CTGGTGACGGCTATGATCGT 59.614 55.000 0.0 0.0 42.67 3.73 R
4044 8415 1.801913 CGTTGAGAAGGCGAGGACG 60.802 63.158 0.0 0.0 42.93 4.79 R
4538 8911 0.105408 GGATGCAATGAACATGCCCC 59.895 55.000 0.0 0.0 43.16 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.484364 TGCATAATCTCATAGTCACAGGAA 57.516 37.500 0.00 0.00 0.00 3.36
24 25 6.283694 TGCATAATCTCATAGTCACAGGAAC 58.716 40.000 0.00 0.00 0.00 3.62
25 26 6.127083 TGCATAATCTCATAGTCACAGGAACA 60.127 38.462 0.00 0.00 0.00 3.18
26 27 6.933521 GCATAATCTCATAGTCACAGGAACAT 59.066 38.462 0.00 0.00 0.00 2.71
27 28 7.095313 GCATAATCTCATAGTCACAGGAACATG 60.095 40.741 0.00 0.00 0.00 3.21
28 29 5.946942 ATCTCATAGTCACAGGAACATGT 57.053 39.130 0.00 0.00 0.00 3.21
29 30 7.423844 AATCTCATAGTCACAGGAACATGTA 57.576 36.000 0.00 0.00 0.00 2.29
30 31 7.609097 ATCTCATAGTCACAGGAACATGTAT 57.391 36.000 0.00 0.00 0.00 2.29
31 32 8.712228 ATCTCATAGTCACAGGAACATGTATA 57.288 34.615 0.00 0.00 0.00 1.47
32 33 8.533569 TCTCATAGTCACAGGAACATGTATAA 57.466 34.615 0.00 0.00 0.00 0.98
33 34 8.633561 TCTCATAGTCACAGGAACATGTATAAG 58.366 37.037 0.00 0.00 0.00 1.73
34 35 8.306313 TCATAGTCACAGGAACATGTATAAGT 57.694 34.615 0.00 0.00 0.00 2.24
35 36 8.414003 TCATAGTCACAGGAACATGTATAAGTC 58.586 37.037 0.00 0.00 0.00 3.01
36 37 6.605471 AGTCACAGGAACATGTATAAGTCA 57.395 37.500 0.00 0.00 0.00 3.41
37 38 7.187824 AGTCACAGGAACATGTATAAGTCAT 57.812 36.000 0.00 0.00 0.00 3.06
38 39 7.044181 AGTCACAGGAACATGTATAAGTCATG 58.956 38.462 0.00 2.95 45.41 3.07
39 40 7.041721 GTCACAGGAACATGTATAAGTCATGA 58.958 38.462 14.21 0.00 43.47 3.07
40 41 7.549134 GTCACAGGAACATGTATAAGTCATGAA 59.451 37.037 14.21 1.95 43.47 2.57
41 42 8.100164 TCACAGGAACATGTATAAGTCATGAAA 58.900 33.333 14.21 1.67 43.47 2.69
42 43 8.729756 CACAGGAACATGTATAAGTCATGAAAA 58.270 33.333 14.21 0.00 43.47 2.29
43 44 9.295825 ACAGGAACATGTATAAGTCATGAAAAA 57.704 29.630 14.21 0.00 43.47 1.94
73 74 6.991485 AGCAACAAATTAAACGATCAAGTG 57.009 33.333 0.00 0.00 0.00 3.16
74 75 5.402270 AGCAACAAATTAAACGATCAAGTGC 59.598 36.000 0.00 0.00 0.00 4.40
75 76 5.402270 GCAACAAATTAAACGATCAAGTGCT 59.598 36.000 0.00 0.00 0.00 4.40
76 77 6.580791 GCAACAAATTAAACGATCAAGTGCTA 59.419 34.615 0.00 0.00 0.00 3.49
77 78 7.114247 GCAACAAATTAAACGATCAAGTGCTAA 59.886 33.333 0.00 0.00 0.00 3.09
78 79 8.629986 CAACAAATTAAACGATCAAGTGCTAAG 58.370 33.333 0.00 0.00 0.00 2.18
79 80 6.801862 ACAAATTAAACGATCAAGTGCTAAGC 59.198 34.615 0.00 0.00 0.00 3.09
80 81 6.743575 AATTAAACGATCAAGTGCTAAGCT 57.256 33.333 0.00 0.00 0.00 3.74
81 82 7.843490 AATTAAACGATCAAGTGCTAAGCTA 57.157 32.000 0.00 0.00 0.00 3.32
82 83 7.843490 ATTAAACGATCAAGTGCTAAGCTAA 57.157 32.000 0.00 0.00 0.00 3.09
83 84 5.532025 AAACGATCAAGTGCTAAGCTAAC 57.468 39.130 0.00 0.00 0.00 2.34
84 85 3.179830 ACGATCAAGTGCTAAGCTAACG 58.820 45.455 0.00 0.00 0.00 3.18
85 86 2.535984 CGATCAAGTGCTAAGCTAACGG 59.464 50.000 0.00 0.00 0.00 4.44
86 87 3.733988 CGATCAAGTGCTAAGCTAACGGA 60.734 47.826 0.00 0.00 0.00 4.69
87 88 3.671008 TCAAGTGCTAAGCTAACGGAA 57.329 42.857 0.00 0.00 0.00 4.30
88 89 4.202245 TCAAGTGCTAAGCTAACGGAAT 57.798 40.909 0.00 0.00 0.00 3.01
89 90 3.932710 TCAAGTGCTAAGCTAACGGAATG 59.067 43.478 0.00 0.00 0.00 2.67
90 91 2.906354 AGTGCTAAGCTAACGGAATGG 58.094 47.619 0.00 0.00 0.00 3.16
91 92 1.940613 GTGCTAAGCTAACGGAATGGG 59.059 52.381 0.00 0.00 0.00 4.00
92 93 1.557832 TGCTAAGCTAACGGAATGGGT 59.442 47.619 0.00 0.00 0.00 4.51
93 94 2.026636 TGCTAAGCTAACGGAATGGGTT 60.027 45.455 0.00 0.00 0.00 4.11
94 95 3.198200 TGCTAAGCTAACGGAATGGGTTA 59.802 43.478 0.00 0.00 0.00 2.85
95 96 4.193865 GCTAAGCTAACGGAATGGGTTAA 58.806 43.478 0.00 0.00 30.13 2.01
96 97 4.272748 GCTAAGCTAACGGAATGGGTTAAG 59.727 45.833 0.00 0.00 30.13 1.85
97 98 3.994931 AGCTAACGGAATGGGTTAAGT 57.005 42.857 0.00 0.00 30.13 2.24
98 99 3.870274 AGCTAACGGAATGGGTTAAGTC 58.130 45.455 0.00 0.00 30.13 3.01
99 100 3.262405 AGCTAACGGAATGGGTTAAGTCA 59.738 43.478 0.00 0.00 30.13 3.41
100 101 4.004982 GCTAACGGAATGGGTTAAGTCAA 58.995 43.478 0.00 0.00 30.13 3.18
101 102 4.638865 GCTAACGGAATGGGTTAAGTCAAT 59.361 41.667 0.00 0.00 30.13 2.57
102 103 5.220796 GCTAACGGAATGGGTTAAGTCAATC 60.221 44.000 0.00 0.00 30.13 2.67
103 104 4.295141 ACGGAATGGGTTAAGTCAATCA 57.705 40.909 0.00 0.00 0.00 2.57
104 105 4.007659 ACGGAATGGGTTAAGTCAATCAC 58.992 43.478 0.00 0.00 0.00 3.06
105 106 4.006989 CGGAATGGGTTAAGTCAATCACA 58.993 43.478 0.00 0.00 0.00 3.58
106 107 4.640201 CGGAATGGGTTAAGTCAATCACAT 59.360 41.667 0.00 0.00 0.00 3.21
107 108 5.220854 CGGAATGGGTTAAGTCAATCACATC 60.221 44.000 0.00 0.00 0.00 3.06
108 109 5.652014 GGAATGGGTTAAGTCAATCACATCA 59.348 40.000 0.00 0.00 0.00 3.07
109 110 6.322201 GGAATGGGTTAAGTCAATCACATCAT 59.678 38.462 0.00 0.00 0.00 2.45
110 111 7.147846 GGAATGGGTTAAGTCAATCACATCATT 60.148 37.037 0.00 0.00 0.00 2.57
111 112 6.757897 TGGGTTAAGTCAATCACATCATTC 57.242 37.500 0.00 0.00 0.00 2.67
112 113 5.652014 TGGGTTAAGTCAATCACATCATTCC 59.348 40.000 0.00 0.00 0.00 3.01
113 114 5.067805 GGGTTAAGTCAATCACATCATTCCC 59.932 44.000 0.00 0.00 0.00 3.97
114 115 5.067805 GGTTAAGTCAATCACATCATTCCCC 59.932 44.000 0.00 0.00 0.00 4.81
115 116 4.598036 AAGTCAATCACATCATTCCCCT 57.402 40.909 0.00 0.00 0.00 4.79
116 117 5.715439 AAGTCAATCACATCATTCCCCTA 57.285 39.130 0.00 0.00 0.00 3.53
117 118 5.715439 AGTCAATCACATCATTCCCCTAA 57.285 39.130 0.00 0.00 0.00 2.69
118 119 6.271585 AGTCAATCACATCATTCCCCTAAT 57.728 37.500 0.00 0.00 0.00 1.73
119 120 6.066690 AGTCAATCACATCATTCCCCTAATG 58.933 40.000 0.00 0.00 45.47 1.90
129 130 4.338879 CATTCCCCTAATGATGTGATCCC 58.661 47.826 0.00 0.00 46.81 3.85
130 131 1.977854 TCCCCTAATGATGTGATCCCG 59.022 52.381 0.00 0.00 0.00 5.14
131 132 1.699634 CCCCTAATGATGTGATCCCGT 59.300 52.381 0.00 0.00 0.00 5.28
132 133 2.106511 CCCCTAATGATGTGATCCCGTT 59.893 50.000 0.00 0.00 0.00 4.44
133 134 3.326588 CCCCTAATGATGTGATCCCGTTA 59.673 47.826 0.00 0.00 0.00 3.18
134 135 4.202419 CCCCTAATGATGTGATCCCGTTAA 60.202 45.833 0.00 0.00 0.00 2.01
135 136 5.514834 CCCCTAATGATGTGATCCCGTTAAT 60.515 44.000 0.00 0.00 0.00 1.40
136 137 5.643777 CCCTAATGATGTGATCCCGTTAATC 59.356 44.000 0.00 0.00 0.00 1.75
137 138 6.230472 CCTAATGATGTGATCCCGTTAATCA 58.770 40.000 0.00 0.00 0.00 2.57
138 139 6.710295 CCTAATGATGTGATCCCGTTAATCAA 59.290 38.462 0.00 0.00 35.04 2.57
139 140 7.228507 CCTAATGATGTGATCCCGTTAATCAAA 59.771 37.037 0.00 0.00 35.04 2.69
140 141 7.587037 AATGATGTGATCCCGTTAATCAAAT 57.413 32.000 0.00 0.00 34.46 2.32
141 142 6.375945 TGATGTGATCCCGTTAATCAAATG 57.624 37.500 0.00 0.00 32.39 2.32
142 143 6.118852 TGATGTGATCCCGTTAATCAAATGA 58.881 36.000 0.00 0.00 32.39 2.57
143 144 5.811399 TGTGATCCCGTTAATCAAATGAC 57.189 39.130 0.00 0.00 35.04 3.06
144 145 5.249420 TGTGATCCCGTTAATCAAATGACA 58.751 37.500 0.00 0.00 35.04 3.58
145 146 5.707764 TGTGATCCCGTTAATCAAATGACAA 59.292 36.000 0.00 0.00 35.04 3.18
146 147 6.027749 GTGATCCCGTTAATCAAATGACAAC 58.972 40.000 0.00 0.00 35.04 3.32
147 148 5.943416 TGATCCCGTTAATCAAATGACAACT 59.057 36.000 0.00 0.00 30.37 3.16
148 149 5.873179 TCCCGTTAATCAAATGACAACTC 57.127 39.130 7.65 0.00 0.00 3.01
149 150 5.556915 TCCCGTTAATCAAATGACAACTCT 58.443 37.500 7.65 0.00 0.00 3.24
150 151 6.001460 TCCCGTTAATCAAATGACAACTCTT 58.999 36.000 7.65 0.00 0.00 2.85
151 152 6.488683 TCCCGTTAATCAAATGACAACTCTTT 59.511 34.615 7.65 0.00 0.00 2.52
152 153 6.582295 CCCGTTAATCAAATGACAACTCTTTG 59.418 38.462 7.65 0.00 38.83 2.77
165 166 6.360370 ACAACTCTTTGTCTATGGCTAGAA 57.640 37.500 0.00 0.00 42.67 2.10
166 167 6.769512 ACAACTCTTTGTCTATGGCTAGAAA 58.230 36.000 0.00 0.00 42.67 2.52
167 168 7.224297 ACAACTCTTTGTCTATGGCTAGAAAA 58.776 34.615 0.00 0.00 42.67 2.29
168 169 7.173390 ACAACTCTTTGTCTATGGCTAGAAAAC 59.827 37.037 0.00 0.00 42.67 2.43
169 170 6.769512 ACTCTTTGTCTATGGCTAGAAAACA 58.230 36.000 0.00 0.00 35.76 2.83
170 171 7.398024 ACTCTTTGTCTATGGCTAGAAAACAT 58.602 34.615 0.00 0.00 35.76 2.71
171 172 8.540388 ACTCTTTGTCTATGGCTAGAAAACATA 58.460 33.333 0.00 0.00 35.76 2.29
172 173 9.383519 CTCTTTGTCTATGGCTAGAAAACATAA 57.616 33.333 0.00 0.00 35.76 1.90
173 174 9.162764 TCTTTGTCTATGGCTAGAAAACATAAC 57.837 33.333 0.00 0.09 35.76 1.89
174 175 7.859325 TTGTCTATGGCTAGAAAACATAACC 57.141 36.000 0.00 0.00 35.76 2.85
175 176 6.953101 TGTCTATGGCTAGAAAACATAACCA 58.047 36.000 0.00 0.00 35.76 3.67
176 177 7.573710 TGTCTATGGCTAGAAAACATAACCAT 58.426 34.615 0.00 0.00 39.62 3.55
177 178 7.715249 TGTCTATGGCTAGAAAACATAACCATC 59.285 37.037 0.00 0.00 37.58 3.51
178 179 7.934120 GTCTATGGCTAGAAAACATAACCATCT 59.066 37.037 0.00 0.00 37.58 2.90
179 180 8.494433 TCTATGGCTAGAAAACATAACCATCTT 58.506 33.333 0.00 0.00 37.58 2.40
180 181 7.961326 ATGGCTAGAAAACATAACCATCTTT 57.039 32.000 0.00 0.00 30.76 2.52
181 182 7.156876 TGGCTAGAAAACATAACCATCTTTG 57.843 36.000 0.00 0.00 0.00 2.77
182 183 6.945435 TGGCTAGAAAACATAACCATCTTTGA 59.055 34.615 0.00 0.00 0.00 2.69
183 184 7.615365 TGGCTAGAAAACATAACCATCTTTGAT 59.385 33.333 0.00 0.00 0.00 2.57
184 185 8.131731 GGCTAGAAAACATAACCATCTTTGATC 58.868 37.037 0.00 0.00 0.00 2.92
185 186 8.677300 GCTAGAAAACATAACCATCTTTGATCA 58.323 33.333 0.00 0.00 0.00 2.92
188 189 8.023128 AGAAAACATAACCATCTTTGATCAACG 58.977 33.333 7.89 6.62 0.00 4.10
189 190 7.447374 AAACATAACCATCTTTGATCAACGA 57.553 32.000 16.08 16.08 0.00 3.85
190 191 6.668541 ACATAACCATCTTTGATCAACGAG 57.331 37.500 18.24 10.23 0.00 4.18
191 192 5.065218 ACATAACCATCTTTGATCAACGAGC 59.935 40.000 18.24 0.00 0.00 5.03
192 193 3.340814 ACCATCTTTGATCAACGAGCT 57.659 42.857 18.24 2.03 0.00 4.09
193 194 4.471904 ACCATCTTTGATCAACGAGCTA 57.528 40.909 18.24 0.00 0.00 3.32
194 195 4.437239 ACCATCTTTGATCAACGAGCTAG 58.563 43.478 18.24 8.24 0.00 3.42
195 196 4.081420 ACCATCTTTGATCAACGAGCTAGT 60.081 41.667 18.24 10.56 0.00 2.57
196 197 4.505922 CCATCTTTGATCAACGAGCTAGTC 59.494 45.833 18.24 0.00 0.00 2.59
197 198 4.783764 TCTTTGATCAACGAGCTAGTCA 57.216 40.909 7.89 0.00 0.00 3.41
198 199 5.134202 TCTTTGATCAACGAGCTAGTCAA 57.866 39.130 7.89 0.00 0.00 3.18
199 200 5.164233 TCTTTGATCAACGAGCTAGTCAAG 58.836 41.667 7.89 0.00 0.00 3.02
200 201 4.521130 TTGATCAACGAGCTAGTCAAGT 57.479 40.909 3.38 0.00 0.00 3.16
201 202 5.638596 TTGATCAACGAGCTAGTCAAGTA 57.361 39.130 3.38 0.00 0.00 2.24
202 203 5.236655 TGATCAACGAGCTAGTCAAGTAG 57.763 43.478 0.00 0.00 0.00 2.57
203 204 4.941873 TGATCAACGAGCTAGTCAAGTAGA 59.058 41.667 0.00 0.00 0.00 2.59
204 205 4.948608 TCAACGAGCTAGTCAAGTAGAG 57.051 45.455 0.00 0.00 0.00 2.43
205 206 3.690139 TCAACGAGCTAGTCAAGTAGAGG 59.310 47.826 0.00 0.00 0.00 3.69
206 207 2.018515 ACGAGCTAGTCAAGTAGAGGC 58.981 52.381 0.00 0.00 0.00 4.70
207 208 2.017782 CGAGCTAGTCAAGTAGAGGCA 58.982 52.381 0.00 0.00 0.00 4.75
208 209 2.621055 CGAGCTAGTCAAGTAGAGGCAT 59.379 50.000 0.00 0.00 0.00 4.40
209 210 3.815962 CGAGCTAGTCAAGTAGAGGCATA 59.184 47.826 0.00 0.00 0.00 3.14
210 211 4.319911 CGAGCTAGTCAAGTAGAGGCATAC 60.320 50.000 0.00 0.00 0.00 2.39
211 212 4.798882 AGCTAGTCAAGTAGAGGCATACT 58.201 43.478 0.00 0.00 37.61 2.12
212 213 5.942961 AGCTAGTCAAGTAGAGGCATACTA 58.057 41.667 3.23 0.00 34.90 1.82
213 214 6.001460 AGCTAGTCAAGTAGAGGCATACTAG 58.999 44.000 0.00 0.00 38.50 2.57
214 215 5.766174 GCTAGTCAAGTAGAGGCATACTAGT 59.234 44.000 0.00 0.00 38.02 2.57
215 216 6.293735 GCTAGTCAAGTAGAGGCATACTAGTG 60.294 46.154 5.39 0.00 38.02 2.74
216 217 5.756918 AGTCAAGTAGAGGCATACTAGTGA 58.243 41.667 5.39 2.59 34.90 3.41
217 218 5.591067 AGTCAAGTAGAGGCATACTAGTGAC 59.409 44.000 17.97 17.97 40.57 3.67
218 219 5.357314 GTCAAGTAGAGGCATACTAGTGACA 59.643 44.000 19.41 0.00 40.28 3.58
219 220 5.357314 TCAAGTAGAGGCATACTAGTGACAC 59.643 44.000 5.39 0.00 34.90 3.67
220 221 5.118729 AGTAGAGGCATACTAGTGACACT 57.881 43.478 13.68 13.68 34.21 3.55
221 222 5.511363 AGTAGAGGCATACTAGTGACACTT 58.489 41.667 14.50 0.00 34.21 3.16
222 223 5.952947 AGTAGAGGCATACTAGTGACACTTT 59.047 40.000 14.50 4.04 34.21 2.66
223 224 5.078411 AGAGGCATACTAGTGACACTTTG 57.922 43.478 14.50 9.81 0.00 2.77
224 225 4.528596 AGAGGCATACTAGTGACACTTTGT 59.471 41.667 14.50 14.92 0.00 2.83
225 226 5.012148 AGAGGCATACTAGTGACACTTTGTT 59.988 40.000 14.50 0.00 0.00 2.83
226 227 5.621193 AGGCATACTAGTGACACTTTGTTT 58.379 37.500 14.50 6.06 0.00 2.83
227 228 5.470098 AGGCATACTAGTGACACTTTGTTTG 59.530 40.000 14.50 17.08 0.00 2.93
228 229 5.238650 GGCATACTAGTGACACTTTGTTTGT 59.761 40.000 14.50 6.39 0.00 2.83
229 230 6.363473 GCATACTAGTGACACTTTGTTTGTC 58.637 40.000 14.50 10.38 43.22 3.18
230 231 6.565999 GCATACTAGTGACACTTTGTTTGTCC 60.566 42.308 14.50 4.29 42.40 4.02
231 232 4.839121 ACTAGTGACACTTTGTTTGTCCA 58.161 39.130 14.50 0.00 42.40 4.02
232 233 5.437060 ACTAGTGACACTTTGTTTGTCCAT 58.563 37.500 14.50 0.00 42.40 3.41
233 234 4.637483 AGTGACACTTTGTTTGTCCATG 57.363 40.909 1.07 0.00 42.40 3.66
234 235 4.016444 AGTGACACTTTGTTTGTCCATGT 58.984 39.130 1.07 0.00 42.40 3.21
235 236 5.189928 AGTGACACTTTGTTTGTCCATGTA 58.810 37.500 1.07 0.00 42.40 2.29
236 237 5.827797 AGTGACACTTTGTTTGTCCATGTAT 59.172 36.000 1.07 0.00 42.40 2.29
237 238 6.321181 AGTGACACTTTGTTTGTCCATGTATT 59.679 34.615 1.07 0.00 42.40 1.89
238 239 6.636850 GTGACACTTTGTTTGTCCATGTATTC 59.363 38.462 0.00 0.00 42.40 1.75
239 240 6.319911 TGACACTTTGTTTGTCCATGTATTCA 59.680 34.615 0.25 0.00 42.40 2.57
240 241 6.503524 ACACTTTGTTTGTCCATGTATTCAC 58.496 36.000 0.00 0.00 0.00 3.18
241 242 6.096141 ACACTTTGTTTGTCCATGTATTCACA 59.904 34.615 0.00 0.00 39.52 3.58
242 243 6.417635 CACTTTGTTTGTCCATGTATTCACAC 59.582 38.462 0.00 0.00 37.54 3.82
243 244 6.096141 ACTTTGTTTGTCCATGTATTCACACA 59.904 34.615 0.00 0.00 37.54 3.72
244 245 6.647334 TTGTTTGTCCATGTATTCACACAT 57.353 33.333 0.00 0.00 39.76 3.21
257 258 7.984391 TGTATTCACACATGTATCATGTTTCC 58.016 34.615 11.89 0.00 0.00 3.13
258 259 5.544136 TTCACACATGTATCATGTTTCCG 57.456 39.130 11.89 4.94 0.00 4.30
259 260 3.938334 TCACACATGTATCATGTTTCCGG 59.062 43.478 11.89 0.00 0.00 5.14
260 261 3.689161 CACACATGTATCATGTTTCCGGT 59.311 43.478 11.89 5.17 0.00 5.28
261 262 4.155826 CACACATGTATCATGTTTCCGGTT 59.844 41.667 11.89 0.00 0.00 4.44
262 263 5.352846 CACACATGTATCATGTTTCCGGTTA 59.647 40.000 11.89 0.00 0.00 2.85
263 264 5.941058 ACACATGTATCATGTTTCCGGTTAA 59.059 36.000 11.89 0.00 0.00 2.01
264 265 6.601613 ACACATGTATCATGTTTCCGGTTAAT 59.398 34.615 11.89 0.00 0.00 1.40
265 266 7.771361 ACACATGTATCATGTTTCCGGTTAATA 59.229 33.333 11.89 0.00 0.00 0.98
266 267 8.067784 CACATGTATCATGTTTCCGGTTAATAC 58.932 37.037 11.89 2.60 0.00 1.89
267 268 7.771361 ACATGTATCATGTTTCCGGTTAATACA 59.229 33.333 0.00 7.97 34.10 2.29
268 269 8.616942 CATGTATCATGTTTCCGGTTAATACAA 58.383 33.333 0.00 0.00 33.52 2.41
269 270 8.740123 TGTATCATGTTTCCGGTTAATACAAT 57.260 30.769 0.00 0.00 0.00 2.71
270 271 9.179909 TGTATCATGTTTCCGGTTAATACAATT 57.820 29.630 0.00 0.00 0.00 2.32
275 276 8.803799 CATGTTTCCGGTTAATACAATTTTAGC 58.196 33.333 0.00 0.00 0.00 3.09
276 277 7.883217 TGTTTCCGGTTAATACAATTTTAGCA 58.117 30.769 0.00 0.00 0.00 3.49
277 278 8.524487 TGTTTCCGGTTAATACAATTTTAGCAT 58.476 29.630 0.00 0.00 0.00 3.79
278 279 8.803799 GTTTCCGGTTAATACAATTTTAGCATG 58.196 33.333 0.00 0.00 0.00 4.06
279 280 7.867305 TCCGGTTAATACAATTTTAGCATGA 57.133 32.000 0.00 0.00 0.00 3.07
280 281 8.282455 TCCGGTTAATACAATTTTAGCATGAA 57.718 30.769 0.00 0.00 0.00 2.57
281 282 8.908903 TCCGGTTAATACAATTTTAGCATGAAT 58.091 29.630 0.00 0.00 0.00 2.57
340 341 8.637196 AATAACTTTATTATTGCCTCTAGGGC 57.363 34.615 13.60 13.60 44.71 5.19
356 357 7.941919 CCTCTAGGGCATATTTCCTTTAAAAC 58.058 38.462 0.00 0.00 34.75 2.43
357 358 7.780271 CCTCTAGGGCATATTTCCTTTAAAACT 59.220 37.037 0.00 0.00 34.75 2.66
358 359 9.847224 CTCTAGGGCATATTTCCTTTAAAACTA 57.153 33.333 0.00 0.00 34.75 2.24
389 390 8.528044 AGTTTGTCCAAGTTTATAGAAACCAA 57.472 30.769 9.30 3.87 45.21 3.67
395 396 7.860872 GTCCAAGTTTATAGAAACCAACACAAG 59.139 37.037 9.30 0.00 45.21 3.16
414 415 8.226543 ACACAAGCATTTACAATAACAAATCG 57.773 30.769 0.00 0.00 0.00 3.34
558 619 8.078596 GTCATTTATTAAATGCTCTAAGCCAGG 58.921 37.037 19.83 0.00 46.09 4.45
559 620 6.391227 TTTATTAAATGCTCTAAGCCAGGC 57.609 37.500 1.84 1.84 41.51 4.85
561 622 1.467920 AAATGCTCTAAGCCAGGCAC 58.532 50.000 15.80 0.00 41.51 5.01
587 2050 1.731720 GCAGTAGCTGGGAAGAGTTG 58.268 55.000 0.00 0.00 37.91 3.16
595 2058 2.030451 GCTGGGAAGAGTTGCTTTCAAG 60.030 50.000 0.00 0.00 36.36 3.02
599 2062 3.481453 GGAAGAGTTGCTTTCAAGACCT 58.519 45.455 0.00 0.00 36.83 3.85
646 2538 0.322975 CATCCGAGTCATCCATCCCC 59.677 60.000 0.00 0.00 0.00 4.81
648 2540 0.760567 TCCGAGTCATCCATCCCCTG 60.761 60.000 0.00 0.00 0.00 4.45
687 2579 3.587170 AACCGCGTCTCCTCCTCCT 62.587 63.158 4.92 0.00 0.00 3.69
713 3195 4.271776 CCTCCGTCTTTACTTCACGTTTTT 59.728 41.667 0.00 0.00 0.00 1.94
714 3196 5.393902 TCCGTCTTTACTTCACGTTTTTC 57.606 39.130 0.00 0.00 0.00 2.29
720 3202 1.977056 ACTTCACGTTTTTCCCCCTC 58.023 50.000 0.00 0.00 0.00 4.30
731 3213 4.101448 CCCCCTCTGGACCAAGCG 62.101 72.222 0.00 0.00 35.39 4.68
770 3259 2.910479 ACGGTCACAGGTCGCAGA 60.910 61.111 0.00 0.00 0.00 4.26
781 3270 2.794621 TCGCAGACTCGCAGCTAG 59.205 61.111 0.00 0.00 0.00 3.42
782 3271 2.041115 TCGCAGACTCGCAGCTAGT 61.041 57.895 0.00 0.00 0.00 2.57
784 3273 0.309302 CGCAGACTCGCAGCTAGTAT 59.691 55.000 0.00 0.00 0.00 2.12
786 3275 2.160615 CGCAGACTCGCAGCTAGTATAT 59.839 50.000 0.00 0.00 0.00 0.86
787 3276 3.726486 CGCAGACTCGCAGCTAGTATATC 60.726 52.174 0.00 0.00 0.00 1.63
791 4564 4.865925 AGACTCGCAGCTAGTATATCTACG 59.134 45.833 0.00 0.00 32.82 3.51
821 4594 1.396301 CTACGAGTAGGAAGCGTTCGT 59.604 52.381 2.46 2.16 45.30 3.85
854 5008 3.103911 CGCGTGACCGTCCACTTC 61.104 66.667 0.00 0.00 35.02 3.01
956 5110 3.432588 CGACGGACGCTCCTCAGT 61.433 66.667 0.00 0.00 33.30 3.41
957 5111 2.104859 CGACGGACGCTCCTCAGTA 61.105 63.158 0.00 0.00 33.30 2.74
959 5113 1.716826 GACGGACGCTCCTCAGTAGG 61.717 65.000 0.00 0.00 45.21 3.18
960 5114 2.809010 GGACGCTCCTCAGTAGGC 59.191 66.667 0.00 0.00 43.31 3.93
1002 5156 4.513519 CCACGAGGCTATTGCGAA 57.486 55.556 0.00 0.00 40.82 4.70
1003 5157 2.762360 CCACGAGGCTATTGCGAAA 58.238 52.632 0.00 0.00 40.82 3.46
1004 5158 0.652592 CCACGAGGCTATTGCGAAAG 59.347 55.000 0.00 0.00 40.82 2.62
1067 5221 2.835895 GGGCTCTCTCCCGGAGAC 60.836 72.222 13.54 4.06 45.20 3.36
1069 5223 3.213402 GCTCTCTCCCGGAGACCG 61.213 72.222 13.54 8.26 45.20 4.79
1078 5280 1.342174 TCCCGGAGACCGCATAAATAC 59.658 52.381 0.73 0.00 46.86 1.89
1081 5283 1.784856 CGGAGACCGCATAAATACACG 59.215 52.381 0.00 0.00 41.17 4.49
1173 5376 6.072112 CTGGAAGTCTACTCTAGAAGCATC 57.928 45.833 0.00 0.00 36.40 3.91
1178 5381 6.463995 AGTCTACTCTAGAAGCATCAAAGG 57.536 41.667 0.00 0.00 36.40 3.11
1238 5441 4.489249 CCAAGCGGTGGTAGTACG 57.511 61.111 1.50 0.00 43.20 3.67
1239 5442 1.153706 CCAAGCGGTGGTAGTACGG 60.154 63.158 1.50 0.00 43.20 4.02
1241 5444 2.353610 AAGCGGTGGTAGTACGGGG 61.354 63.158 0.00 0.00 0.00 5.73
1242 5445 3.841758 GCGGTGGTAGTACGGGGG 61.842 72.222 0.00 0.00 0.00 5.40
1260 5463 4.301027 GAGGTATCCGGCCCGCAG 62.301 72.222 0.00 0.00 0.00 5.18
1294 5497 1.359848 CTTGTTGATCGGGGAGTTCG 58.640 55.000 0.00 0.00 0.00 3.95
1381 5590 0.729140 GGCGATTTTGTTGCTGGTCG 60.729 55.000 0.00 0.00 37.39 4.79
1557 5775 1.640069 CGTGATGATGCGCTCCTTG 59.360 57.895 9.73 0.00 0.00 3.61
1602 5820 2.725008 GTCCTCATCGCCTCCTCG 59.275 66.667 0.00 0.00 0.00 4.63
1640 5858 3.725459 CCGCGCAATGTGAGTGCA 61.725 61.111 8.75 0.00 42.33 4.57
1784 6005 5.246307 ACTATAAGCAAGCGTTTCTTTCCT 58.754 37.500 3.06 0.00 31.27 3.36
1930 6158 2.822637 CCGGGCCACCTGCAGATAT 61.823 63.158 17.39 0.00 43.89 1.63
1931 6159 1.480212 CCGGGCCACCTGCAGATATA 61.480 60.000 17.39 0.00 43.89 0.86
1932 6160 0.615331 CGGGCCACCTGCAGATATAT 59.385 55.000 17.39 0.00 43.89 0.86
1933 6161 1.831106 CGGGCCACCTGCAGATATATA 59.169 52.381 17.39 0.00 43.89 0.86
1934 6162 2.418746 CGGGCCACCTGCAGATATATAC 60.419 54.545 17.39 0.00 43.89 1.47
1935 6163 2.418746 GGGCCACCTGCAGATATATACG 60.419 54.545 17.39 0.00 43.89 3.06
1936 6164 2.496070 GGCCACCTGCAGATATATACGA 59.504 50.000 17.39 0.00 43.89 3.43
1937 6165 3.133003 GGCCACCTGCAGATATATACGAT 59.867 47.826 17.39 0.00 43.89 3.73
1938 6166 4.383118 GGCCACCTGCAGATATATACGATT 60.383 45.833 17.39 0.00 43.89 3.34
1939 6167 5.163447 GGCCACCTGCAGATATATACGATTA 60.163 44.000 17.39 0.00 43.89 1.75
1942 6170 8.141909 GCCACCTGCAGATATATACGATTATAA 58.858 37.037 17.39 0.00 40.77 0.98
1959 6187 8.421784 ACGATTATAATACAAGGAAGCTTCTGA 58.578 33.333 25.05 7.47 0.00 3.27
1968 6196 7.208225 ACAAGGAAGCTTCTGAAGTATTTTC 57.792 36.000 25.05 14.95 0.00 2.29
1973 6201 9.574516 AGGAAGCTTCTGAAGTATTTTCTTTAA 57.425 29.630 25.05 0.00 0.00 1.52
1988 6216 8.814038 ATTTTCTTTAATCTACTCCATGCTGT 57.186 30.769 0.00 0.00 0.00 4.40
1989 6217 8.635765 TTTTCTTTAATCTACTCCATGCTGTT 57.364 30.769 0.00 0.00 0.00 3.16
1990 6218 8.635765 TTTCTTTAATCTACTCCATGCTGTTT 57.364 30.769 0.00 0.00 0.00 2.83
1991 6219 8.635765 TTCTTTAATCTACTCCATGCTGTTTT 57.364 30.769 0.00 0.00 0.00 2.43
1992 6220 8.635765 TCTTTAATCTACTCCATGCTGTTTTT 57.364 30.769 0.00 0.00 0.00 1.94
1993 6221 9.733556 TCTTTAATCTACTCCATGCTGTTTTTA 57.266 29.630 0.00 0.00 0.00 1.52
1994 6222 9.774742 CTTTAATCTACTCCATGCTGTTTTTAC 57.225 33.333 0.00 0.00 0.00 2.01
1995 6223 8.856153 TTAATCTACTCCATGCTGTTTTTACA 57.144 30.769 0.00 0.00 0.00 2.41
1996 6224 7.944729 AATCTACTCCATGCTGTTTTTACAT 57.055 32.000 0.00 0.00 0.00 2.29
2018 6248 8.438676 ACATATAGTCTCCATGCTGTTTTTAC 57.561 34.615 0.00 0.00 0.00 2.01
2019 6249 8.046708 ACATATAGTCTCCATGCTGTTTTTACA 58.953 33.333 0.00 0.00 0.00 2.41
2020 6250 9.060347 CATATAGTCTCCATGCTGTTTTTACAT 57.940 33.333 0.00 0.00 0.00 2.29
2054 6284 4.196971 GCTGTTTACCAGACGGGATATTT 58.803 43.478 0.00 0.00 44.49 1.40
2119 6352 2.025589 TCACCGTTGTGTGCTGTTAA 57.974 45.000 0.00 0.00 43.26 2.01
2121 6354 2.946329 TCACCGTTGTGTGCTGTTAATT 59.054 40.909 0.00 0.00 43.26 1.40
2123 6356 4.212425 TCACCGTTGTGTGCTGTTAATTAG 59.788 41.667 0.00 0.00 43.26 1.73
2124 6357 4.212425 CACCGTTGTGTGCTGTTAATTAGA 59.788 41.667 0.00 0.00 37.72 2.10
2125 6358 4.451096 ACCGTTGTGTGCTGTTAATTAGAG 59.549 41.667 0.00 0.00 0.00 2.43
2152 6385 8.704849 AGTACTCTCAGAGAATATGCTGTATT 57.295 34.615 9.27 0.00 33.32 1.89
2185 6418 1.989165 GCTGTGAGCTTTGACGAGTAG 59.011 52.381 0.00 0.00 38.45 2.57
2211 6444 4.590850 ATTTGTTTGGTGGCTTCTCTTC 57.409 40.909 0.00 0.00 0.00 2.87
2212 6445 2.727123 TGTTTGGTGGCTTCTCTTCA 57.273 45.000 0.00 0.00 0.00 3.02
2261 6494 3.815962 GTGGTCAACTTTCCTTCCTCTTC 59.184 47.826 0.00 0.00 0.00 2.87
2264 6497 4.457257 GGTCAACTTTCCTTCCTCTTCATG 59.543 45.833 0.00 0.00 0.00 3.07
2270 6503 7.846101 ACTTTCCTTCCTCTTCATGAAATTT 57.154 32.000 9.88 0.00 0.00 1.82
2306 6539 3.759618 TGTTTTGGATACGGTCAAATCCC 59.240 43.478 6.07 0.00 40.91 3.85
2402 6653 4.771114 ATTCATTCCGTTCCCAGTATGA 57.229 40.909 0.00 0.00 39.69 2.15
2403 6654 4.771114 TTCATTCCGTTCCCAGTATGAT 57.229 40.909 0.00 0.00 39.69 2.45
2404 6655 4.771114 TCATTCCGTTCCCAGTATGATT 57.229 40.909 0.00 0.00 39.69 2.57
2405 6656 5.110814 TCATTCCGTTCCCAGTATGATTT 57.889 39.130 0.00 0.00 39.69 2.17
2406 6657 5.505780 TCATTCCGTTCCCAGTATGATTTT 58.494 37.500 0.00 0.00 39.69 1.82
2407 6658 5.949354 TCATTCCGTTCCCAGTATGATTTTT 59.051 36.000 0.00 0.00 39.69 1.94
2461 6712 0.036164 TTCTGATGGTGGTGAACGGG 59.964 55.000 0.00 0.00 0.00 5.28
2564 6815 4.202461 TGAACAGGAGGTTTAAGCTGACAT 60.202 41.667 0.00 0.00 40.63 3.06
2599 6850 1.202580 GCATGGAGCTTGGTCGACTAT 60.203 52.381 16.46 0.00 41.15 2.12
2674 6925 1.898574 CTTCCAGTGCGGCCAGTTT 60.899 57.895 2.24 0.00 33.14 2.66
2819 7156 6.942005 TCTTCTTCTGCTTGAAATGTTATGGA 59.058 34.615 0.00 0.00 33.79 3.41
2824 7161 3.193267 TGCTTGAAATGTTATGGACCTGC 59.807 43.478 0.00 0.00 0.00 4.85
2839 7176 3.118629 GGACCTGCTGAGTTGATCATGTA 60.119 47.826 0.00 0.00 37.28 2.29
2843 7180 3.261580 TGCTGAGTTGATCATGTAACGG 58.738 45.455 0.00 0.00 37.28 4.44
2850 7187 2.616960 TGATCATGTAACGGTCTGTGC 58.383 47.619 0.00 0.00 0.00 4.57
2855 7192 1.860676 TGTAACGGTCTGTGCTGAAC 58.139 50.000 0.00 0.00 0.00 3.18
2870 7207 4.081642 GTGCTGAACTAGATGGTGTCCTTA 60.082 45.833 0.00 0.00 0.00 2.69
2872 7209 4.870991 GCTGAACTAGATGGTGTCCTTAAC 59.129 45.833 0.00 0.00 0.00 2.01
2873 7210 5.337652 GCTGAACTAGATGGTGTCCTTAACT 60.338 44.000 0.00 0.00 0.00 2.24
2874 7211 6.282199 TGAACTAGATGGTGTCCTTAACTC 57.718 41.667 0.00 0.00 0.00 3.01
2875 7212 5.187186 TGAACTAGATGGTGTCCTTAACTCC 59.813 44.000 0.00 0.00 41.14 3.85
2876 7213 4.949121 ACTAGATGGTGTCCTTAACTCCT 58.051 43.478 0.00 0.00 41.30 3.69
2877 7214 5.342866 ACTAGATGGTGTCCTTAACTCCTT 58.657 41.667 0.00 0.00 41.30 3.36
2878 7215 6.500336 ACTAGATGGTGTCCTTAACTCCTTA 58.500 40.000 0.00 0.00 41.30 2.69
2879 7216 5.678955 AGATGGTGTCCTTAACTCCTTAC 57.321 43.478 0.00 0.00 41.30 2.34
2890 7227 5.692204 CCTTAACTCCTTACGTATGCTGATG 59.308 44.000 0.00 0.00 0.00 3.07
2916 7272 5.246307 AGTACAGTTCCTAAATTGAGCCAC 58.754 41.667 0.00 0.00 0.00 5.01
2919 7275 4.702131 ACAGTTCCTAAATTGAGCCACATC 59.298 41.667 0.00 0.00 0.00 3.06
2925 7281 2.401583 AATTGAGCCACATCGCTACA 57.598 45.000 0.00 0.00 39.87 2.74
2927 7283 1.939974 TTGAGCCACATCGCTACATC 58.060 50.000 0.00 0.00 39.87 3.06
2928 7284 1.114627 TGAGCCACATCGCTACATCT 58.885 50.000 0.00 0.00 39.87 2.90
2929 7285 1.202452 TGAGCCACATCGCTACATCTG 60.202 52.381 0.00 0.00 39.87 2.90
2931 7287 1.208052 AGCCACATCGCTACATCTGTT 59.792 47.619 0.00 0.00 37.32 3.16
2932 7288 1.328680 GCCACATCGCTACATCTGTTG 59.671 52.381 0.00 0.00 0.00 3.33
2933 7289 2.892374 CCACATCGCTACATCTGTTGA 58.108 47.619 0.00 0.00 0.00 3.18
2934 7290 3.461061 CCACATCGCTACATCTGTTGAT 58.539 45.455 0.00 0.00 0.00 2.57
2947 7303 4.492494 TCTGTTGATGATGGCATGTACT 57.508 40.909 3.81 0.00 34.11 2.73
2948 7304 4.193865 TCTGTTGATGATGGCATGTACTG 58.806 43.478 3.81 0.23 34.11 2.74
2949 7305 3.281158 TGTTGATGATGGCATGTACTGG 58.719 45.455 3.81 0.00 34.11 4.00
2987 7346 9.547753 TGAGCAACTATTAATAGATGGAACTTC 57.452 33.333 25.83 11.85 34.76 3.01
3055 7416 4.277174 CACTAAACCACCACAAGCACATAA 59.723 41.667 0.00 0.00 0.00 1.90
3317 7682 1.392710 GGCTTCCTAGTCGGCTGCTA 61.393 60.000 0.00 0.00 33.31 3.49
3351 7716 3.883997 CAAACCATTGTTCCACCCG 57.116 52.632 0.00 0.00 32.15 5.28
3463 7828 5.495640 CTTCAGCTCCATTCTCTAACCTTT 58.504 41.667 0.00 0.00 0.00 3.11
3470 7838 6.636454 TCCATTCTCTAACCTTTGTATGGT 57.364 37.500 0.00 0.00 39.91 3.55
3472 7840 7.110155 TCCATTCTCTAACCTTTGTATGGTTC 58.890 38.462 1.13 0.00 45.52 3.62
3548 7917 0.971959 ATTGGCATGTTCCATGCGGT 60.972 50.000 19.57 8.03 45.41 5.68
3572 7941 0.615331 ACAGCGTGATCACATTCCCT 59.385 50.000 24.93 9.81 0.00 4.20
3679 8048 2.575532 TCTTGGGTGAGTGAAAGCAAG 58.424 47.619 0.00 0.00 0.00 4.01
3695 8064 4.483476 AGCAAGAATTTACGACCACAAC 57.517 40.909 0.00 0.00 0.00 3.32
3810 8181 3.688272 CAGTTATGCTGCTGAAATTCCG 58.312 45.455 0.00 0.00 38.52 4.30
3841 8212 6.173427 TCATGGAGCTGCTAATGTACATAA 57.827 37.500 9.21 0.00 0.00 1.90
3853 8224 6.020599 GCTAATGTACATAACGATCATAGCCG 60.021 42.308 9.21 0.00 0.00 5.52
3925 8296 0.823356 TGAGAAACAAGGTGCCCTGC 60.823 55.000 0.00 0.00 32.13 4.85
3984 8355 1.302752 GGCTGCATATGCGATCCCA 60.303 57.895 22.21 3.13 45.83 4.37
4038 8409 0.988832 TGGGTTGGTCCATGTACCTC 59.011 55.000 9.11 2.28 40.44 3.85
4044 8415 1.004277 TGGTCCATGTACCTCTTTGGC 59.996 52.381 9.11 0.00 40.44 4.52
4389 8760 5.556006 TCATCATATGGACAGCTGATTCA 57.444 39.130 23.35 15.11 0.00 2.57
4390 8761 5.548406 TCATCATATGGACAGCTGATTCAG 58.452 41.667 23.35 9.40 34.12 3.02
4391 8762 5.306160 TCATCATATGGACAGCTGATTCAGA 59.694 40.000 23.35 12.57 32.44 3.27
4392 8763 5.820404 TCATATGGACAGCTGATTCAGAT 57.180 39.130 23.35 14.24 32.44 2.90
4393 8764 6.183810 TCATATGGACAGCTGATTCAGATT 57.816 37.500 23.35 2.38 32.44 2.40
4394 8765 5.995897 TCATATGGACAGCTGATTCAGATTG 59.004 40.000 23.35 15.44 32.44 2.67
4395 8766 2.995283 TGGACAGCTGATTCAGATTGG 58.005 47.619 23.35 2.88 32.44 3.16
4396 8767 1.674962 GGACAGCTGATTCAGATTGGC 59.325 52.381 23.35 15.20 32.44 4.52
4397 8768 2.641305 GACAGCTGATTCAGATTGGCT 58.359 47.619 23.35 4.73 32.44 4.75
4429 8800 9.730705 TTGATTCATTCTGACTATTTTGTCTCT 57.269 29.630 0.00 0.00 37.79 3.10
4498 8869 9.823098 GAGCAACTAATATTTGAATGCAGATAG 57.177 33.333 22.61 4.41 34.89 2.08
4516 8889 6.808212 GCAGATAGAGAAGATAGATCAGTTGC 59.192 42.308 0.00 0.00 0.00 4.17
4558 8931 0.249155 GGGCATGTTCATTGCATCCG 60.249 55.000 0.00 0.00 41.95 4.18
4564 8937 0.965363 GTTCATTGCATCCGGTGGGT 60.965 55.000 0.00 0.00 33.83 4.51
4574 8948 0.339162 TCCGGTGGGTAATGGGACTA 59.661 55.000 0.00 0.00 33.83 2.59
4584 8958 7.201875 GGTGGGTAATGGGACTATTGTAAATTG 60.202 40.741 0.00 0.00 0.00 2.32
4593 8967 7.102993 GGGACTATTGTAAATTGCCATTTGTT 58.897 34.615 6.03 0.00 34.29 2.83
4594 8968 8.254508 GGGACTATTGTAAATTGCCATTTGTTA 58.745 33.333 6.03 0.00 34.29 2.41
4597 8971 8.257306 ACTATTGTAAATTGCCATTTGTTAGGG 58.743 33.333 6.03 0.00 34.29 3.53
4598 8972 6.426646 TTGTAAATTGCCATTTGTTAGGGT 57.573 33.333 6.03 0.00 34.29 4.34
4599 8973 5.788450 TGTAAATTGCCATTTGTTAGGGTG 58.212 37.500 6.03 0.00 34.29 4.61
4600 8974 4.972751 AAATTGCCATTTGTTAGGGTGT 57.027 36.364 0.00 0.00 30.89 4.16
4602 8976 4.535526 ATTGCCATTTGTTAGGGTGTTC 57.464 40.909 0.00 0.00 0.00 3.18
4604 8978 8.652081 AAATTGCCATTTGTTAGGGTGTTCCC 62.652 42.308 0.00 0.00 41.41 3.97
4615 8989 2.358322 GGTGTTCCCCTGTTTCAGAA 57.642 50.000 0.00 0.00 32.44 3.02
4616 8990 2.661718 GGTGTTCCCCTGTTTCAGAAA 58.338 47.619 0.00 0.00 32.44 2.52
4617 8991 3.028130 GGTGTTCCCCTGTTTCAGAAAA 58.972 45.455 0.00 0.00 32.44 2.29
4618 8992 3.449377 GGTGTTCCCCTGTTTCAGAAAAA 59.551 43.478 0.00 0.00 32.44 1.94
4666 9040 6.198966 GGTTCAAACTATGTTTGAGCAAGTTG 59.801 38.462 27.73 0.00 40.09 3.16
4678 9052 3.118261 TGAGCAAGTTGTTTCCTGTCTCT 60.118 43.478 4.48 0.00 0.00 3.10
4745 9133 6.265422 TCTTCCCATTTTTCTGGAAAAGAGTC 59.735 38.462 8.24 0.00 40.35 3.36
4764 9152 1.375523 GGGACTCAATGGCGAACGT 60.376 57.895 0.00 0.00 0.00 3.99
4765 9153 1.359459 GGGACTCAATGGCGAACGTC 61.359 60.000 0.00 0.00 0.00 4.34
4774 9163 1.774639 TGGCGAACGTCTGAAACTAC 58.225 50.000 0.00 0.00 0.00 2.73
4780 9169 4.758561 CGAACGTCTGAAACTACCAAAAG 58.241 43.478 0.00 0.00 0.00 2.27
4799 9188 6.542370 CCAAAAGGTAGACGGTTCATCATAAT 59.458 38.462 0.00 0.00 0.00 1.28
4800 9189 7.067008 CCAAAAGGTAGACGGTTCATCATAATT 59.933 37.037 0.00 0.00 0.00 1.40
4801 9190 7.787725 AAAGGTAGACGGTTCATCATAATTC 57.212 36.000 0.00 0.00 0.00 2.17
4865 9254 9.743057 TGAAAACAAAGTGTAGATACAAAATGG 57.257 29.630 0.00 0.00 38.04 3.16
4876 9265 8.150945 TGTAGATACAAAATGGATAAGAGAGCC 58.849 37.037 0.00 0.00 32.40 4.70
4886 9275 3.553922 GGATAAGAGAGCCAACGATGAGG 60.554 52.174 0.00 0.00 31.97 3.86
4899 9288 3.262420 ACGATGAGGTTGCATAGTCAAC 58.738 45.455 0.00 0.00 44.07 3.18
5005 9406 2.818751 AGTTGGAAAAGGTGGACACA 57.181 45.000 4.69 0.00 0.00 3.72
5054 9455 6.593770 CCTTGGTTTTGCTATTAATTTGTCCC 59.406 38.462 0.00 0.00 0.00 4.46
5068 9469 1.070786 GTCCCGCAGTTCCTGTTGA 59.929 57.895 0.00 0.00 33.43 3.18
5162 9563 8.549338 AAGTAAACTATAGTCAAGTTGGAAGC 57.451 34.615 5.70 0.00 37.26 3.86
5187 9588 3.368495 GACACACAAAAGCCGGTAAAAG 58.632 45.455 1.90 0.00 0.00 2.27
5188 9589 3.018149 ACACACAAAAGCCGGTAAAAGA 58.982 40.909 1.90 0.00 0.00 2.52
5189 9590 3.066203 ACACACAAAAGCCGGTAAAAGAG 59.934 43.478 1.90 0.00 0.00 2.85
5190 9591 3.066203 CACACAAAAGCCGGTAAAAGAGT 59.934 43.478 1.90 0.00 0.00 3.24
5191 9592 3.066203 ACACAAAAGCCGGTAAAAGAGTG 59.934 43.478 1.90 6.68 0.00 3.51
5192 9593 3.066203 CACAAAAGCCGGTAAAAGAGTGT 59.934 43.478 1.90 0.00 0.00 3.55
5193 9594 3.066203 ACAAAAGCCGGTAAAAGAGTGTG 59.934 43.478 1.90 0.00 0.00 3.82
5196 9597 2.699954 AGCCGGTAAAAGAGTGTGATG 58.300 47.619 1.90 0.00 0.00 3.07
5197 9598 2.038557 AGCCGGTAAAAGAGTGTGATGT 59.961 45.455 1.90 0.00 0.00 3.06
5218 9619 4.104579 TGTGGCCAGAATGATATGTACCAT 59.895 41.667 5.11 0.00 39.69 3.55
5219 9620 4.456911 GTGGCCAGAATGATATGTACCATG 59.543 45.833 5.11 0.00 39.69 3.66
5251 9652 0.963225 TCAGATTTGTCGTCACGGGA 59.037 50.000 0.00 0.00 0.00 5.14
5299 9700 2.429250 TGAGTTTCAGACCGAGACAACA 59.571 45.455 0.00 0.00 31.05 3.33
5444 9850 0.729116 CGTCCACTGATGTTCCATGC 59.271 55.000 0.00 0.00 0.00 4.06
5468 9874 1.210478 TCCTGCAGATAAACCCTCAGC 59.790 52.381 17.39 0.00 0.00 4.26
5503 9909 1.014352 AACAAACACACTGAGCCGAC 58.986 50.000 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.127083 TGTTCCTGTGACTATGAGATTATGCA 60.127 38.462 0.00 0.00 0.00 3.96
1 2 6.283694 TGTTCCTGTGACTATGAGATTATGC 58.716 40.000 0.00 0.00 0.00 3.14
2 3 7.930325 ACATGTTCCTGTGACTATGAGATTATG 59.070 37.037 0.00 0.00 0.00 1.90
3 4 8.027524 ACATGTTCCTGTGACTATGAGATTAT 57.972 34.615 0.00 0.00 0.00 1.28
5 6 6.305272 ACATGTTCCTGTGACTATGAGATT 57.695 37.500 0.00 0.00 0.00 2.40
6 7 5.946942 ACATGTTCCTGTGACTATGAGAT 57.053 39.130 0.00 0.00 0.00 2.75
7 8 8.533569 TTATACATGTTCCTGTGACTATGAGA 57.466 34.615 2.30 0.00 0.00 3.27
8 9 8.417106 ACTTATACATGTTCCTGTGACTATGAG 58.583 37.037 2.30 0.00 0.00 2.90
9 10 8.306313 ACTTATACATGTTCCTGTGACTATGA 57.694 34.615 2.30 0.00 0.00 2.15
10 11 8.197439 TGACTTATACATGTTCCTGTGACTATG 58.803 37.037 2.30 0.00 0.00 2.23
11 12 8.306313 TGACTTATACATGTTCCTGTGACTAT 57.694 34.615 2.30 0.00 0.00 2.12
12 13 7.712204 TGACTTATACATGTTCCTGTGACTA 57.288 36.000 2.30 0.00 0.00 2.59
13 14 6.605471 TGACTTATACATGTTCCTGTGACT 57.395 37.500 2.30 0.00 0.00 3.41
14 15 7.041721 TCATGACTTATACATGTTCCTGTGAC 58.958 38.462 2.30 0.00 43.56 3.67
15 16 7.181569 TCATGACTTATACATGTTCCTGTGA 57.818 36.000 2.30 0.00 43.56 3.58
16 17 7.848223 TTCATGACTTATACATGTTCCTGTG 57.152 36.000 2.30 0.00 43.56 3.66
17 18 8.862325 TTTTCATGACTTATACATGTTCCTGT 57.138 30.769 2.30 0.00 43.56 4.00
47 48 9.128107 CACTTGATCGTTTAATTTGTTGCTATT 57.872 29.630 0.00 0.00 0.00 1.73
48 49 7.273381 GCACTTGATCGTTTAATTTGTTGCTAT 59.727 33.333 0.00 0.00 0.00 2.97
49 50 6.580791 GCACTTGATCGTTTAATTTGTTGCTA 59.419 34.615 0.00 0.00 0.00 3.49
50 51 5.402270 GCACTTGATCGTTTAATTTGTTGCT 59.598 36.000 0.00 0.00 0.00 3.91
51 52 5.402270 AGCACTTGATCGTTTAATTTGTTGC 59.598 36.000 0.00 0.00 0.00 4.17
52 53 6.991485 AGCACTTGATCGTTTAATTTGTTG 57.009 33.333 0.00 0.00 0.00 3.33
53 54 7.326063 GCTTAGCACTTGATCGTTTAATTTGTT 59.674 33.333 0.00 0.00 0.00 2.83
54 55 6.801862 GCTTAGCACTTGATCGTTTAATTTGT 59.198 34.615 0.00 0.00 0.00 2.83
55 56 7.023575 AGCTTAGCACTTGATCGTTTAATTTG 58.976 34.615 7.07 0.00 0.00 2.32
56 57 7.145932 AGCTTAGCACTTGATCGTTTAATTT 57.854 32.000 7.07 0.00 0.00 1.82
57 58 6.743575 AGCTTAGCACTTGATCGTTTAATT 57.256 33.333 7.07 0.00 0.00 1.40
58 59 7.464178 CGTTAGCTTAGCACTTGATCGTTTAAT 60.464 37.037 7.07 0.00 0.00 1.40
59 60 6.183360 CGTTAGCTTAGCACTTGATCGTTTAA 60.183 38.462 7.07 0.00 0.00 1.52
60 61 5.287752 CGTTAGCTTAGCACTTGATCGTTTA 59.712 40.000 7.07 0.00 0.00 2.01
61 62 4.091509 CGTTAGCTTAGCACTTGATCGTTT 59.908 41.667 7.07 0.00 0.00 3.60
62 63 3.612860 CGTTAGCTTAGCACTTGATCGTT 59.387 43.478 7.07 0.00 0.00 3.85
63 64 3.179830 CGTTAGCTTAGCACTTGATCGT 58.820 45.455 7.07 0.00 0.00 3.73
64 65 2.535984 CCGTTAGCTTAGCACTTGATCG 59.464 50.000 7.07 1.46 0.00 3.69
65 66 3.782046 TCCGTTAGCTTAGCACTTGATC 58.218 45.455 7.07 0.00 0.00 2.92
66 67 3.887621 TCCGTTAGCTTAGCACTTGAT 57.112 42.857 7.07 0.00 0.00 2.57
67 68 3.671008 TTCCGTTAGCTTAGCACTTGA 57.329 42.857 7.07 0.00 0.00 3.02
68 69 3.063997 CCATTCCGTTAGCTTAGCACTTG 59.936 47.826 7.07 0.00 0.00 3.16
69 70 3.270877 CCATTCCGTTAGCTTAGCACTT 58.729 45.455 7.07 0.00 0.00 3.16
70 71 2.420129 CCCATTCCGTTAGCTTAGCACT 60.420 50.000 7.07 0.00 0.00 4.40
71 72 1.940613 CCCATTCCGTTAGCTTAGCAC 59.059 52.381 7.07 0.00 0.00 4.40
72 73 1.557832 ACCCATTCCGTTAGCTTAGCA 59.442 47.619 7.07 0.00 0.00 3.49
73 74 2.327200 ACCCATTCCGTTAGCTTAGC 57.673 50.000 0.00 0.00 0.00 3.09
74 75 5.425630 ACTTAACCCATTCCGTTAGCTTAG 58.574 41.667 0.00 0.00 0.00 2.18
75 76 5.046448 TGACTTAACCCATTCCGTTAGCTTA 60.046 40.000 0.00 0.00 0.00 3.09
76 77 4.259356 GACTTAACCCATTCCGTTAGCTT 58.741 43.478 0.00 0.00 0.00 3.74
77 78 3.262405 TGACTTAACCCATTCCGTTAGCT 59.738 43.478 0.00 0.00 0.00 3.32
78 79 3.602483 TGACTTAACCCATTCCGTTAGC 58.398 45.455 0.00 0.00 0.00 3.09
79 80 5.878116 TGATTGACTTAACCCATTCCGTTAG 59.122 40.000 0.00 0.00 0.00 2.34
80 81 5.644636 GTGATTGACTTAACCCATTCCGTTA 59.355 40.000 0.00 0.00 0.00 3.18
81 82 4.457949 GTGATTGACTTAACCCATTCCGTT 59.542 41.667 0.00 0.00 0.00 4.44
82 83 4.007659 GTGATTGACTTAACCCATTCCGT 58.992 43.478 0.00 0.00 0.00 4.69
83 84 4.006989 TGTGATTGACTTAACCCATTCCG 58.993 43.478 0.00 0.00 0.00 4.30
84 85 5.652014 TGATGTGATTGACTTAACCCATTCC 59.348 40.000 0.00 0.00 0.00 3.01
85 86 6.757897 TGATGTGATTGACTTAACCCATTC 57.242 37.500 0.00 0.00 0.00 2.67
86 87 7.147846 GGAATGATGTGATTGACTTAACCCATT 60.148 37.037 0.00 0.00 0.00 3.16
87 88 6.322201 GGAATGATGTGATTGACTTAACCCAT 59.678 38.462 0.00 0.00 0.00 4.00
88 89 5.652014 GGAATGATGTGATTGACTTAACCCA 59.348 40.000 0.00 0.00 0.00 4.51
89 90 5.067805 GGGAATGATGTGATTGACTTAACCC 59.932 44.000 0.00 0.00 0.00 4.11
90 91 5.067805 GGGGAATGATGTGATTGACTTAACC 59.932 44.000 0.00 0.00 0.00 2.85
91 92 5.888161 AGGGGAATGATGTGATTGACTTAAC 59.112 40.000 0.00 0.00 0.00 2.01
92 93 6.078456 AGGGGAATGATGTGATTGACTTAA 57.922 37.500 0.00 0.00 0.00 1.85
93 94 5.715439 AGGGGAATGATGTGATTGACTTA 57.285 39.130 0.00 0.00 0.00 2.24
94 95 4.598036 AGGGGAATGATGTGATTGACTT 57.402 40.909 0.00 0.00 0.00 3.01
95 96 5.715439 TTAGGGGAATGATGTGATTGACT 57.285 39.130 0.00 0.00 0.00 3.41
96 97 6.323203 CATTAGGGGAATGATGTGATTGAC 57.677 41.667 0.00 0.00 46.94 3.18
107 108 4.338879 GGGATCACATCATTAGGGGAATG 58.661 47.826 0.00 0.00 45.57 2.67
108 109 3.009473 CGGGATCACATCATTAGGGGAAT 59.991 47.826 0.00 0.00 0.00 3.01
109 110 2.371841 CGGGATCACATCATTAGGGGAA 59.628 50.000 0.00 0.00 0.00 3.97
110 111 1.977854 CGGGATCACATCATTAGGGGA 59.022 52.381 0.00 0.00 0.00 4.81
111 112 1.699634 ACGGGATCACATCATTAGGGG 59.300 52.381 0.00 0.00 0.00 4.79
112 113 3.492102 AACGGGATCACATCATTAGGG 57.508 47.619 0.00 0.00 0.00 3.53
113 114 6.230472 TGATTAACGGGATCACATCATTAGG 58.770 40.000 0.00 0.00 0.00 2.69
114 115 7.728847 TTGATTAACGGGATCACATCATTAG 57.271 36.000 0.00 0.00 33.51 1.73
115 116 8.567104 CATTTGATTAACGGGATCACATCATTA 58.433 33.333 0.00 0.00 33.51 1.90
116 117 7.285172 TCATTTGATTAACGGGATCACATCATT 59.715 33.333 0.00 0.00 33.51 2.57
117 118 6.772233 TCATTTGATTAACGGGATCACATCAT 59.228 34.615 0.00 0.00 33.51 2.45
118 119 6.038161 GTCATTTGATTAACGGGATCACATCA 59.962 38.462 0.00 0.00 33.51 3.07
119 120 6.038161 TGTCATTTGATTAACGGGATCACATC 59.962 38.462 0.00 0.00 33.51 3.06
120 121 5.885352 TGTCATTTGATTAACGGGATCACAT 59.115 36.000 0.00 0.00 33.51 3.21
121 122 5.249420 TGTCATTTGATTAACGGGATCACA 58.751 37.500 0.00 0.00 33.51 3.58
122 123 5.811399 TGTCATTTGATTAACGGGATCAC 57.189 39.130 0.00 0.00 33.51 3.06
123 124 5.943416 AGTTGTCATTTGATTAACGGGATCA 59.057 36.000 0.00 0.00 32.73 2.92
124 125 6.316390 AGAGTTGTCATTTGATTAACGGGATC 59.684 38.462 0.00 0.00 32.73 3.36
125 126 6.180472 AGAGTTGTCATTTGATTAACGGGAT 58.820 36.000 0.00 0.00 32.73 3.85
126 127 5.556915 AGAGTTGTCATTTGATTAACGGGA 58.443 37.500 0.00 0.00 32.73 5.14
127 128 5.880054 AGAGTTGTCATTTGATTAACGGG 57.120 39.130 0.00 0.00 32.73 5.28
128 129 7.138736 ACAAAGAGTTGTCATTTGATTAACGG 58.861 34.615 4.08 0.00 45.00 4.44
143 144 7.173218 TGTTTTCTAGCCATAGACAAAGAGTTG 59.827 37.037 0.00 0.00 37.77 3.16
144 145 7.224297 TGTTTTCTAGCCATAGACAAAGAGTT 58.776 34.615 0.00 0.00 37.77 3.01
145 146 6.769512 TGTTTTCTAGCCATAGACAAAGAGT 58.230 36.000 0.00 0.00 37.77 3.24
146 147 7.856145 ATGTTTTCTAGCCATAGACAAAGAG 57.144 36.000 0.00 0.00 37.77 2.85
147 148 9.162764 GTTATGTTTTCTAGCCATAGACAAAGA 57.837 33.333 0.00 0.00 37.77 2.52
148 149 8.398665 GGTTATGTTTTCTAGCCATAGACAAAG 58.601 37.037 0.00 0.00 37.77 2.77
149 150 7.885922 TGGTTATGTTTTCTAGCCATAGACAAA 59.114 33.333 0.00 0.00 37.77 2.83
150 151 7.398829 TGGTTATGTTTTCTAGCCATAGACAA 58.601 34.615 0.00 0.00 37.77 3.18
151 152 6.953101 TGGTTATGTTTTCTAGCCATAGACA 58.047 36.000 0.00 0.00 37.77 3.41
152 153 7.934120 AGATGGTTATGTTTTCTAGCCATAGAC 59.066 37.037 0.00 0.00 39.44 2.59
153 154 8.034313 AGATGGTTATGTTTTCTAGCCATAGA 57.966 34.615 0.00 0.00 39.44 1.98
154 155 8.682936 AAGATGGTTATGTTTTCTAGCCATAG 57.317 34.615 0.00 0.00 39.44 2.23
155 156 8.902806 CAAAGATGGTTATGTTTTCTAGCCATA 58.097 33.333 0.00 0.00 39.44 2.74
156 157 7.615365 TCAAAGATGGTTATGTTTTCTAGCCAT 59.385 33.333 0.00 0.00 41.28 4.40
157 158 6.945435 TCAAAGATGGTTATGTTTTCTAGCCA 59.055 34.615 0.00 0.00 34.50 4.75
158 159 7.391148 TCAAAGATGGTTATGTTTTCTAGCC 57.609 36.000 0.00 0.00 28.23 3.93
159 160 8.677300 TGATCAAAGATGGTTATGTTTTCTAGC 58.323 33.333 0.00 0.00 28.23 3.42
162 163 8.023128 CGTTGATCAAAGATGGTTATGTTTTCT 58.977 33.333 15.34 0.00 28.23 2.52
163 164 8.020819 TCGTTGATCAAAGATGGTTATGTTTTC 58.979 33.333 18.50 0.00 28.23 2.29
164 165 7.881142 TCGTTGATCAAAGATGGTTATGTTTT 58.119 30.769 18.50 0.00 28.23 2.43
165 166 7.447374 TCGTTGATCAAAGATGGTTATGTTT 57.553 32.000 18.50 0.00 30.61 2.83
166 167 6.403636 GCTCGTTGATCAAAGATGGTTATGTT 60.404 38.462 21.83 0.00 0.00 2.71
167 168 5.065218 GCTCGTTGATCAAAGATGGTTATGT 59.935 40.000 21.83 0.00 0.00 2.29
168 169 5.295292 AGCTCGTTGATCAAAGATGGTTATG 59.705 40.000 21.83 11.16 0.00 1.90
169 170 5.431765 AGCTCGTTGATCAAAGATGGTTAT 58.568 37.500 21.83 4.91 0.00 1.89
170 171 4.832248 AGCTCGTTGATCAAAGATGGTTA 58.168 39.130 21.83 1.90 0.00 2.85
171 172 3.679389 AGCTCGTTGATCAAAGATGGTT 58.321 40.909 21.83 8.86 0.00 3.67
172 173 3.340814 AGCTCGTTGATCAAAGATGGT 57.659 42.857 21.83 17.63 0.00 3.55
173 174 4.437239 ACTAGCTCGTTGATCAAAGATGG 58.563 43.478 21.83 14.18 0.00 3.51
174 175 5.105063 TGACTAGCTCGTTGATCAAAGATG 58.895 41.667 21.83 16.63 0.00 2.90
175 176 5.330455 TGACTAGCTCGTTGATCAAAGAT 57.670 39.130 21.83 12.82 0.00 2.40
176 177 4.783764 TGACTAGCTCGTTGATCAAAGA 57.216 40.909 20.62 20.62 0.00 2.52
177 178 4.926238 ACTTGACTAGCTCGTTGATCAAAG 59.074 41.667 10.35 12.64 0.00 2.77
178 179 4.883083 ACTTGACTAGCTCGTTGATCAAA 58.117 39.130 10.35 0.00 0.00 2.69
179 180 4.521130 ACTTGACTAGCTCGTTGATCAA 57.479 40.909 3.38 3.38 0.00 2.57
180 181 4.941873 TCTACTTGACTAGCTCGTTGATCA 59.058 41.667 0.00 0.00 0.00 2.92
181 182 5.487153 TCTACTTGACTAGCTCGTTGATC 57.513 43.478 0.00 0.00 0.00 2.92
182 183 4.336993 CCTCTACTTGACTAGCTCGTTGAT 59.663 45.833 0.00 0.00 0.00 2.57
183 184 3.690139 CCTCTACTTGACTAGCTCGTTGA 59.310 47.826 0.00 0.00 0.00 3.18
184 185 3.732471 GCCTCTACTTGACTAGCTCGTTG 60.732 52.174 0.00 0.00 0.00 4.10
185 186 2.424246 GCCTCTACTTGACTAGCTCGTT 59.576 50.000 0.00 0.00 0.00 3.85
186 187 2.018515 GCCTCTACTTGACTAGCTCGT 58.981 52.381 0.00 0.00 0.00 4.18
187 188 2.017782 TGCCTCTACTTGACTAGCTCG 58.982 52.381 0.00 0.00 0.00 5.03
188 189 4.825085 AGTATGCCTCTACTTGACTAGCTC 59.175 45.833 0.00 0.00 0.00 4.09
189 190 4.798882 AGTATGCCTCTACTTGACTAGCT 58.201 43.478 0.00 0.00 0.00 3.32
190 191 5.766174 ACTAGTATGCCTCTACTTGACTAGC 59.234 44.000 0.00 0.00 38.86 3.42
191 192 6.993308 TCACTAGTATGCCTCTACTTGACTAG 59.007 42.308 0.00 0.00 40.35 2.57
192 193 6.766944 GTCACTAGTATGCCTCTACTTGACTA 59.233 42.308 0.00 0.00 36.95 2.59
193 194 5.591067 GTCACTAGTATGCCTCTACTTGACT 59.409 44.000 0.00 0.00 36.95 3.41
194 195 5.357314 TGTCACTAGTATGCCTCTACTTGAC 59.643 44.000 0.00 11.98 38.64 3.18
195 196 5.357314 GTGTCACTAGTATGCCTCTACTTGA 59.643 44.000 0.00 0.18 33.96 3.02
196 197 5.358442 AGTGTCACTAGTATGCCTCTACTTG 59.642 44.000 2.87 0.00 33.96 3.16
197 198 5.511363 AGTGTCACTAGTATGCCTCTACTT 58.489 41.667 2.87 0.00 33.96 2.24
198 199 5.118729 AGTGTCACTAGTATGCCTCTACT 57.881 43.478 2.87 0.00 36.04 2.57
199 200 5.838531 AAGTGTCACTAGTATGCCTCTAC 57.161 43.478 5.77 0.00 0.00 2.59
200 201 5.715279 ACAAAGTGTCACTAGTATGCCTCTA 59.285 40.000 5.77 0.00 0.00 2.43
201 202 4.528596 ACAAAGTGTCACTAGTATGCCTCT 59.471 41.667 5.77 0.00 0.00 3.69
202 203 4.822026 ACAAAGTGTCACTAGTATGCCTC 58.178 43.478 5.77 0.00 0.00 4.70
203 204 4.891992 ACAAAGTGTCACTAGTATGCCT 57.108 40.909 5.77 0.00 0.00 4.75
204 205 5.238650 ACAAACAAAGTGTCACTAGTATGCC 59.761 40.000 5.77 0.00 0.00 4.40
205 206 6.300354 ACAAACAAAGTGTCACTAGTATGC 57.700 37.500 5.77 0.00 0.00 3.14
206 207 6.481976 TGGACAAACAAAGTGTCACTAGTATG 59.518 38.462 5.77 6.23 45.94 2.39
207 208 6.588204 TGGACAAACAAAGTGTCACTAGTAT 58.412 36.000 5.77 0.00 45.94 2.12
208 209 5.979993 TGGACAAACAAAGTGTCACTAGTA 58.020 37.500 5.77 0.00 45.94 1.82
209 210 4.839121 TGGACAAACAAAGTGTCACTAGT 58.161 39.130 5.77 5.56 45.94 2.57
210 211 5.296780 ACATGGACAAACAAAGTGTCACTAG 59.703 40.000 5.77 4.90 45.94 2.57
211 212 5.189928 ACATGGACAAACAAAGTGTCACTA 58.810 37.500 5.77 0.00 45.94 2.74
212 213 4.016444 ACATGGACAAACAAAGTGTCACT 58.984 39.130 0.00 0.00 45.94 3.41
213 214 4.370364 ACATGGACAAACAAAGTGTCAC 57.630 40.909 6.86 0.00 45.94 3.67
214 215 6.319911 TGAATACATGGACAAACAAAGTGTCA 59.680 34.615 6.86 0.00 45.94 3.58
215 216 6.636850 GTGAATACATGGACAAACAAAGTGTC 59.363 38.462 0.00 0.00 43.87 3.67
216 217 6.096141 TGTGAATACATGGACAAACAAAGTGT 59.904 34.615 0.00 0.00 0.00 3.55
217 218 6.417635 GTGTGAATACATGGACAAACAAAGTG 59.582 38.462 0.00 0.00 39.39 3.16
218 219 6.096141 TGTGTGAATACATGGACAAACAAAGT 59.904 34.615 0.00 0.00 39.39 2.66
219 220 6.502652 TGTGTGAATACATGGACAAACAAAG 58.497 36.000 0.00 0.00 39.39 2.77
220 221 6.456795 TGTGTGAATACATGGACAAACAAA 57.543 33.333 0.00 0.00 39.39 2.83
221 222 6.647334 ATGTGTGAATACATGGACAAACAA 57.353 33.333 0.00 0.00 39.68 2.83
231 232 8.623903 GGAAACATGATACATGTGTGAATACAT 58.376 33.333 16.29 0.00 41.77 2.29
232 233 7.201600 CGGAAACATGATACATGTGTGAATACA 60.202 37.037 16.29 0.00 34.63 2.29
233 234 7.125755 CGGAAACATGATACATGTGTGAATAC 58.874 38.462 16.29 1.40 31.80 1.89
234 235 6.259829 CCGGAAACATGATACATGTGTGAATA 59.740 38.462 16.29 0.00 31.80 1.75
235 236 5.066375 CCGGAAACATGATACATGTGTGAAT 59.934 40.000 16.29 0.00 31.80 2.57
236 237 4.394610 CCGGAAACATGATACATGTGTGAA 59.605 41.667 16.29 0.00 31.80 3.18
237 238 3.938334 CCGGAAACATGATACATGTGTGA 59.062 43.478 16.29 0.00 31.80 3.58
238 239 3.689161 ACCGGAAACATGATACATGTGTG 59.311 43.478 9.46 4.81 31.80 3.82
239 240 3.950397 ACCGGAAACATGATACATGTGT 58.050 40.909 9.46 11.88 31.80 3.72
240 241 4.963276 AACCGGAAACATGATACATGTG 57.037 40.909 9.46 7.59 31.80 3.21
241 242 7.771361 TGTATTAACCGGAAACATGATACATGT 59.229 33.333 9.46 10.94 0.00 3.21
242 243 8.148807 TGTATTAACCGGAAACATGATACATG 57.851 34.615 9.46 9.72 0.00 3.21
243 244 8.740123 TTGTATTAACCGGAAACATGATACAT 57.260 30.769 9.46 0.00 31.27 2.29
244 245 8.740123 ATTGTATTAACCGGAAACATGATACA 57.260 30.769 9.46 9.57 0.00 2.29
249 250 8.803799 GCTAAAATTGTATTAACCGGAAACATG 58.196 33.333 9.46 0.00 0.00 3.21
250 251 8.524487 TGCTAAAATTGTATTAACCGGAAACAT 58.476 29.630 9.46 0.00 0.00 2.71
251 252 7.883217 TGCTAAAATTGTATTAACCGGAAACA 58.117 30.769 9.46 1.34 0.00 2.83
252 253 8.803799 CATGCTAAAATTGTATTAACCGGAAAC 58.196 33.333 9.46 0.00 0.00 2.78
253 254 8.740906 TCATGCTAAAATTGTATTAACCGGAAA 58.259 29.630 9.46 1.61 0.00 3.13
254 255 8.282455 TCATGCTAAAATTGTATTAACCGGAA 57.718 30.769 9.46 0.00 0.00 4.30
255 256 7.867305 TCATGCTAAAATTGTATTAACCGGA 57.133 32.000 9.46 0.00 0.00 5.14
331 332 7.780271 AGTTTTAAAGGAAATATGCCCTAGAGG 59.220 37.037 0.00 0.00 39.47 3.69
332 333 8.753497 AGTTTTAAAGGAAATATGCCCTAGAG 57.247 34.615 0.00 0.00 31.36 2.43
389 390 8.079203 TCGATTTGTTATTGTAAATGCTTGTGT 58.921 29.630 0.00 0.00 0.00 3.72
568 629 1.731720 CAACTCTTCCCAGCTACTGC 58.268 55.000 0.00 0.00 40.05 4.40
569 630 1.277557 AGCAACTCTTCCCAGCTACTG 59.722 52.381 0.00 0.00 33.06 2.74
571 632 2.481289 AAGCAACTCTTCCCAGCTAC 57.519 50.000 0.00 0.00 34.66 3.58
572 633 2.371841 TGAAAGCAACTCTTCCCAGCTA 59.628 45.455 0.00 0.00 34.66 3.32
573 634 1.143684 TGAAAGCAACTCTTCCCAGCT 59.856 47.619 0.00 0.00 37.08 4.24
574 635 1.609208 TGAAAGCAACTCTTCCCAGC 58.391 50.000 0.00 0.00 32.88 4.85
575 636 3.251972 GTCTTGAAAGCAACTCTTCCCAG 59.748 47.826 0.00 0.00 32.88 4.45
587 2050 1.230324 AACGCAGAGGTCTTGAAAGC 58.770 50.000 0.00 0.00 0.00 3.51
595 2058 1.578206 GGGCTGAAAACGCAGAGGTC 61.578 60.000 0.00 0.00 38.14 3.85
599 2062 0.669318 CTACGGGCTGAAAACGCAGA 60.669 55.000 0.00 0.00 38.14 4.26
687 2579 2.486982 CGTGAAGTAAAGACGGAGGAGA 59.513 50.000 0.00 0.00 0.00 3.71
713 3195 2.610859 GCTTGGTCCAGAGGGGGA 60.611 66.667 0.00 0.00 37.22 4.81
714 3196 4.101448 CGCTTGGTCCAGAGGGGG 62.101 72.222 0.00 0.00 37.22 5.40
720 3202 2.982130 AGCTACCGCTTGGTCCAG 59.018 61.111 0.00 0.00 45.05 3.86
731 3213 5.379827 GTGAAACGTGATGTAAAAGCTACC 58.620 41.667 0.00 0.00 0.00 3.18
821 4594 1.079543 GCGCCTCTGCTTTCTCTCA 60.080 57.895 0.00 0.00 34.43 3.27
846 4619 0.603975 GGTGGACTGCTGAAGTGGAC 60.604 60.000 0.00 0.00 40.07 4.02
854 5008 4.969196 ACGCGTGGTGGACTGCTG 62.969 66.667 12.93 0.00 0.00 4.41
992 5146 3.784525 GCGTAGTTTCCTTTCGCAATAGC 60.785 47.826 0.00 0.00 40.21 2.97
1000 5154 2.669364 TCTCGTGCGTAGTTTCCTTTC 58.331 47.619 0.00 0.00 0.00 2.62
1001 5155 2.798847 GTTCTCGTGCGTAGTTTCCTTT 59.201 45.455 0.00 0.00 0.00 3.11
1002 5156 2.401351 GTTCTCGTGCGTAGTTTCCTT 58.599 47.619 0.00 0.00 0.00 3.36
1003 5157 1.665161 CGTTCTCGTGCGTAGTTTCCT 60.665 52.381 0.00 0.00 0.00 3.36
1004 5158 0.706729 CGTTCTCGTGCGTAGTTTCC 59.293 55.000 0.00 0.00 0.00 3.13
1066 5220 1.011333 GTGGCGTGTATTTATGCGGT 58.989 50.000 0.00 0.00 33.38 5.68
1067 5221 0.306533 GGTGGCGTGTATTTATGCGG 59.693 55.000 0.00 0.00 33.38 5.69
1069 5223 0.306533 CCGGTGGCGTGTATTTATGC 59.693 55.000 0.00 0.00 0.00 3.14
1119 5322 0.933700 AGAGGAAGGGAGAGAGGGAG 59.066 60.000 0.00 0.00 0.00 4.30
1120 5323 0.633921 CAGAGGAAGGGAGAGAGGGA 59.366 60.000 0.00 0.00 0.00 4.20
1121 5324 1.048160 GCAGAGGAAGGGAGAGAGGG 61.048 65.000 0.00 0.00 0.00 4.30
1122 5325 0.032217 AGCAGAGGAAGGGAGAGAGG 60.032 60.000 0.00 0.00 0.00 3.69
1243 5446 4.301027 CTGCGGGCCGGATACCTC 62.301 72.222 29.48 9.45 0.00 3.85
1762 5983 5.803020 AGGAAAGAAACGCTTGCTTATAG 57.197 39.130 0.00 0.00 36.80 1.31
1784 6005 5.220567 GCTTGCCATTGTCGAAAAAGAAAAA 60.221 36.000 0.00 0.00 0.00 1.94
1932 6160 9.692749 CAGAAGCTTCCTTGTATTATAATCGTA 57.307 33.333 22.81 0.00 0.00 3.43
1933 6161 8.421784 TCAGAAGCTTCCTTGTATTATAATCGT 58.578 33.333 22.81 0.00 0.00 3.73
1934 6162 8.818141 TCAGAAGCTTCCTTGTATTATAATCG 57.182 34.615 22.81 0.00 0.00 3.34
1942 6170 8.870075 AAAATACTTCAGAAGCTTCCTTGTAT 57.130 30.769 22.81 19.91 0.00 2.29
1946 6174 8.470657 AAAGAAAATACTTCAGAAGCTTCCTT 57.529 30.769 22.81 10.95 0.00 3.36
1964 6192 8.635765 AACAGCATGGAGTAGATTAAAGAAAA 57.364 30.769 0.00 0.00 43.62 2.29
1968 6196 9.774742 GTAAAAACAGCATGGAGTAGATTAAAG 57.225 33.333 0.00 0.00 43.62 1.85
1974 6202 9.764363 CTATATGTAAAAACAGCATGGAGTAGA 57.236 33.333 0.00 0.00 43.62 2.59
1975 6203 9.547753 ACTATATGTAAAAACAGCATGGAGTAG 57.452 33.333 0.00 0.00 43.62 2.57
1976 6204 9.542462 GACTATATGTAAAAACAGCATGGAGTA 57.458 33.333 0.00 0.00 43.62 2.59
1977 6205 8.267894 AGACTATATGTAAAAACAGCATGGAGT 58.732 33.333 0.00 0.00 43.62 3.85
1978 6206 8.668510 AGACTATATGTAAAAACAGCATGGAG 57.331 34.615 0.00 0.00 43.62 3.86
1979 6207 7.715249 GGAGACTATATGTAAAAACAGCATGGA 59.285 37.037 0.00 0.00 43.62 3.41
1980 6208 7.498900 TGGAGACTATATGTAAAAACAGCATGG 59.501 37.037 0.00 0.00 43.62 3.66
1981 6209 8.437360 TGGAGACTATATGTAAAAACAGCATG 57.563 34.615 0.00 0.00 46.00 4.06
1982 6210 9.060347 CATGGAGACTATATGTAAAAACAGCAT 57.940 33.333 0.00 0.00 0.00 3.79
1983 6211 7.012327 GCATGGAGACTATATGTAAAAACAGCA 59.988 37.037 0.00 0.00 0.00 4.41
1984 6212 7.227512 AGCATGGAGACTATATGTAAAAACAGC 59.772 37.037 0.00 0.00 0.00 4.40
1985 6213 8.554528 CAGCATGGAGACTATATGTAAAAACAG 58.445 37.037 0.00 0.00 0.00 3.16
1986 6214 8.046708 ACAGCATGGAGACTATATGTAAAAACA 58.953 33.333 0.00 0.00 43.62 2.83
1987 6215 8.438676 ACAGCATGGAGACTATATGTAAAAAC 57.561 34.615 0.00 0.00 43.62 2.43
1988 6216 9.461312 AAACAGCATGGAGACTATATGTAAAAA 57.539 29.630 0.00 0.00 43.62 1.94
1989 6217 9.461312 AAAACAGCATGGAGACTATATGTAAAA 57.539 29.630 0.00 0.00 43.62 1.52
1990 6218 9.461312 AAAAACAGCATGGAGACTATATGTAAA 57.539 29.630 0.00 0.00 43.62 2.01
1992 6220 9.542462 GTAAAAACAGCATGGAGACTATATGTA 57.458 33.333 0.00 0.00 43.62 2.29
1993 6221 8.046708 TGTAAAAACAGCATGGAGACTATATGT 58.953 33.333 0.00 0.00 43.62 2.29
1994 6222 8.437360 TGTAAAAACAGCATGGAGACTATATG 57.563 34.615 0.00 0.00 43.62 1.78
2017 6247 6.099701 TGGTAAACAGCATGGAGACTATATGT 59.900 38.462 0.00 0.00 43.62 2.29
2018 6248 6.524734 TGGTAAACAGCATGGAGACTATATG 58.475 40.000 0.00 0.00 43.62 1.78
2019 6249 6.747414 TGGTAAACAGCATGGAGACTATAT 57.253 37.500 0.00 0.00 43.62 0.86
2020 6250 6.161855 CTGGTAAACAGCATGGAGACTATA 57.838 41.667 0.00 0.00 43.62 1.31
2054 6284 0.672711 GCAGACTGAGCATGCACTGA 60.673 55.000 24.50 2.28 39.75 3.41
2123 6356 7.444183 ACAGCATATTCTCTGAGAGTACTACTC 59.556 40.741 11.49 8.02 38.28 2.59
2124 6357 7.287061 ACAGCATATTCTCTGAGAGTACTACT 58.713 38.462 11.49 7.18 34.57 2.57
2125 6358 7.504924 ACAGCATATTCTCTGAGAGTACTAC 57.495 40.000 11.49 5.30 34.57 2.73
2137 6370 7.706607 TGTACTCACACAATACAGCATATTCTC 59.293 37.037 0.00 0.00 0.00 2.87
2185 6418 3.826729 AGAAGCCACCAAACAAATACTCC 59.173 43.478 0.00 0.00 0.00 3.85
2211 6444 4.314740 TGGAAACCAACCGATTTCTTTG 57.685 40.909 0.00 0.00 35.55 2.77
2212 6445 5.545063 ATTGGAAACCAACCGATTTCTTT 57.455 34.783 5.33 0.00 46.95 2.52
2321 6562 4.530857 CGGGGCGGAGTCATGGTC 62.531 72.222 0.00 0.00 0.00 4.02
2407 6658 9.587772 TTTCAATTCATACTTCCGTTTCAAAAA 57.412 25.926 0.00 0.00 0.00 1.94
2408 6659 9.757227 ATTTCAATTCATACTTCCGTTTCAAAA 57.243 25.926 0.00 0.00 0.00 2.44
2414 6665 9.173021 TGTCATATTTCAATTCATACTTCCGTT 57.827 29.630 0.00 0.00 0.00 4.44
2415 6666 8.731275 TGTCATATTTCAATTCATACTTCCGT 57.269 30.769 0.00 0.00 0.00 4.69
2444 6695 0.036164 TTCCCGTTCACCACCATCAG 59.964 55.000 0.00 0.00 0.00 2.90
2461 6712 1.127343 CATCCTCCTCCCTCCTGTTC 58.873 60.000 0.00 0.00 0.00 3.18
2564 6815 2.076100 CCATGCGTAGAGCTTGTTCAA 58.924 47.619 0.00 0.00 46.09 2.69
2599 6850 0.523335 CGATCATGACGACACGCTCA 60.523 55.000 0.00 0.00 0.00 4.26
2674 6925 4.933505 TGGATTGATGAAAACAGCACAA 57.066 36.364 0.00 0.00 0.00 3.33
2819 7156 4.256920 GTTACATGATCAACTCAGCAGGT 58.743 43.478 0.00 0.00 37.28 4.00
2824 7161 4.564372 CAGACCGTTACATGATCAACTCAG 59.436 45.833 0.00 0.00 37.28 3.35
2839 7176 1.961394 TCTAGTTCAGCACAGACCGTT 59.039 47.619 0.00 0.00 0.00 4.44
2843 7180 3.257393 CACCATCTAGTTCAGCACAGAC 58.743 50.000 0.00 0.00 0.00 3.51
2850 7187 6.287589 AGTTAAGGACACCATCTAGTTCAG 57.712 41.667 0.00 0.00 0.00 3.02
2855 7192 5.941555 AAGGAGTTAAGGACACCATCTAG 57.058 43.478 0.00 0.00 41.04 2.43
2870 7207 5.537300 ATCATCAGCATACGTAAGGAGTT 57.463 39.130 0.00 0.00 46.39 3.01
2872 7209 6.260870 ACTATCATCAGCATACGTAAGGAG 57.739 41.667 0.00 0.00 46.39 3.69
2873 7210 6.713450 TGTACTATCATCAGCATACGTAAGGA 59.287 38.462 0.00 0.00 46.39 3.36
2874 7211 6.909909 TGTACTATCATCAGCATACGTAAGG 58.090 40.000 0.00 0.00 46.39 2.69
2875 7212 7.585867 ACTGTACTATCATCAGCATACGTAAG 58.414 38.462 0.00 0.00 36.62 2.34
2876 7213 7.506328 ACTGTACTATCATCAGCATACGTAA 57.494 36.000 0.00 0.00 33.12 3.18
2877 7214 7.308408 GGAACTGTACTATCATCAGCATACGTA 60.308 40.741 0.00 0.00 33.12 3.57
2878 7215 6.392625 AACTGTACTATCATCAGCATACGT 57.607 37.500 0.00 0.00 33.12 3.57
2879 7216 5.859114 GGAACTGTACTATCATCAGCATACG 59.141 44.000 0.00 0.00 33.12 3.06
2890 7227 7.224949 GTGGCTCAATTTAGGAACTGTACTATC 59.775 40.741 0.00 0.00 41.52 2.08
2916 7272 4.151867 CCATCATCAACAGATGTAGCGATG 59.848 45.833 5.48 11.10 40.93 3.84
2919 7275 2.222678 GCCATCATCAACAGATGTAGCG 59.777 50.000 5.48 0.00 40.93 4.26
2925 7281 4.820173 CAGTACATGCCATCATCAACAGAT 59.180 41.667 0.00 0.00 0.00 2.90
2927 7283 3.314357 CCAGTACATGCCATCATCAACAG 59.686 47.826 0.00 0.00 0.00 3.16
2928 7284 3.281158 CCAGTACATGCCATCATCAACA 58.719 45.455 0.00 0.00 0.00 3.33
2929 7285 2.033801 GCCAGTACATGCCATCATCAAC 59.966 50.000 0.00 0.00 0.00 3.18
2931 7287 1.212441 TGCCAGTACATGCCATCATCA 59.788 47.619 0.00 0.00 0.00 3.07
2932 7288 1.971481 TGCCAGTACATGCCATCATC 58.029 50.000 0.00 0.00 0.00 2.92
2933 7289 2.670019 ATGCCAGTACATGCCATCAT 57.330 45.000 0.00 0.00 0.00 2.45
2934 7290 3.574354 TTATGCCAGTACATGCCATCA 57.426 42.857 0.00 0.00 0.00 3.07
2935 7291 3.004734 GGTTTATGCCAGTACATGCCATC 59.995 47.826 0.00 0.00 0.00 3.51
2936 7292 2.958355 GGTTTATGCCAGTACATGCCAT 59.042 45.455 0.00 0.00 0.00 4.40
2937 7293 2.291217 TGGTTTATGCCAGTACATGCCA 60.291 45.455 0.00 0.00 33.97 4.92
2938 7294 2.374184 TGGTTTATGCCAGTACATGCC 58.626 47.619 0.00 0.00 33.97 4.40
2947 7303 2.284754 TGCTCAACTGGTTTATGCCA 57.715 45.000 0.00 0.00 36.97 4.92
2948 7304 2.946564 GTTGCTCAACTGGTTTATGCC 58.053 47.619 5.56 0.00 38.25 4.40
2997 7356 0.596577 CCATGCATGTGATAGCTGGC 59.403 55.000 24.58 0.00 0.00 4.85
3001 7360 1.269413 GCCAACCATGCATGTGATAGC 60.269 52.381 24.58 16.12 0.00 2.97
3003 7362 2.140839 TGCCAACCATGCATGTGATA 57.859 45.000 24.58 7.47 32.85 2.15
3080 7441 8.887264 ACCTTCCGATCTGAAACTATATAGAT 57.113 34.615 16.79 1.28 32.87 1.98
3317 7682 2.375146 GTTTGTCCAACAAGTCTGGGT 58.625 47.619 0.00 0.00 39.53 4.51
3463 7828 4.724399 TCTTTGGAAGCAAGAACCATACA 58.276 39.130 0.00 0.00 33.56 2.29
3470 7838 6.882140 TCGGTAAATATCTTTGGAAGCAAGAA 59.118 34.615 0.00 0.00 33.94 2.52
3471 7839 6.315393 GTCGGTAAATATCTTTGGAAGCAAGA 59.685 38.462 0.00 0.00 34.74 3.02
3472 7840 6.093495 TGTCGGTAAATATCTTTGGAAGCAAG 59.907 38.462 0.00 0.00 0.00 4.01
3548 7917 3.521560 GAATGTGATCACGCTGTTAGGA 58.478 45.455 20.54 0.20 0.00 2.94
3593 7962 1.774894 GCCAGGACCACCAGTACCAA 61.775 60.000 0.00 0.00 38.94 3.67
3679 8048 8.875803 TCAAGTATATGTTGTGGTCGTAAATTC 58.124 33.333 0.00 0.00 0.00 2.17
3742 8113 6.588719 TGTTAGCAGGCAGAAATTAAATGT 57.411 33.333 0.00 0.00 0.00 2.71
3810 8181 1.222936 CAGCTCCATGAGGACCACC 59.777 63.158 0.00 0.00 39.61 4.61
3841 8212 0.385751 CTGGTGACGGCTATGATCGT 59.614 55.000 0.00 0.00 42.67 3.73
3853 8224 1.885871 GCCTTGCCAATCTGGTGAC 59.114 57.895 0.00 0.00 40.46 3.67
3976 8347 3.253432 GGGATTACAAAGAATGGGATCGC 59.747 47.826 2.14 2.14 33.56 4.58
3984 8355 5.018809 ACTGTGCATGGGATTACAAAGAAT 58.981 37.500 0.00 0.00 0.00 2.40
4044 8415 1.801913 CGTTGAGAAGGCGAGGACG 60.802 63.158 0.00 0.00 42.93 4.79
4389 8760 8.577296 CAGAATGAATCAATAATCAGCCAATCT 58.423 33.333 0.00 0.00 39.69 2.40
4390 8761 8.573885 TCAGAATGAATCAATAATCAGCCAATC 58.426 33.333 0.00 0.00 45.97 2.67
4391 8762 8.473358 TCAGAATGAATCAATAATCAGCCAAT 57.527 30.769 0.00 0.00 45.97 3.16
4392 8763 7.885009 TCAGAATGAATCAATAATCAGCCAA 57.115 32.000 0.00 0.00 45.97 4.52
4533 8906 2.106166 TGCAATGAACATGCCCCTTTTT 59.894 40.909 0.00 0.00 43.16 1.94
4538 8911 0.105408 GGATGCAATGAACATGCCCC 59.895 55.000 0.00 0.00 43.16 5.80
4558 8931 3.945640 ACAATAGTCCCATTACCCACC 57.054 47.619 0.00 0.00 0.00 4.61
4564 8937 8.546083 AATGGCAATTTACAATAGTCCCATTA 57.454 30.769 0.00 0.00 38.40 1.90
4574 8948 6.878389 CACCCTAACAAATGGCAATTTACAAT 59.122 34.615 0.00 0.00 34.14 2.71
4584 8958 1.548719 GGGAACACCCTAACAAATGGC 59.451 52.381 0.00 0.00 40.49 4.40
4597 8971 4.729227 TTTTTCTGAAACAGGGGAACAC 57.271 40.909 1.58 0.00 31.51 3.32
4618 8992 4.452455 CGTCAGACCTAGCAAGACATTTTT 59.548 41.667 0.00 0.00 0.00 1.94
4619 8993 3.997021 CGTCAGACCTAGCAAGACATTTT 59.003 43.478 0.00 0.00 0.00 1.82
4620 8994 3.589988 CGTCAGACCTAGCAAGACATTT 58.410 45.455 0.00 0.00 0.00 2.32
4621 8995 2.093973 CCGTCAGACCTAGCAAGACATT 60.094 50.000 0.00 0.00 0.00 2.71
4622 8996 1.478510 CCGTCAGACCTAGCAAGACAT 59.521 52.381 0.00 0.00 0.00 3.06
4623 8997 0.888619 CCGTCAGACCTAGCAAGACA 59.111 55.000 0.00 0.00 0.00 3.41
4624 8998 0.889306 ACCGTCAGACCTAGCAAGAC 59.111 55.000 0.00 0.00 0.00 3.01
4625 8999 1.544691 GAACCGTCAGACCTAGCAAGA 59.455 52.381 0.00 0.00 0.00 3.02
4704 9078 8.942338 AATGGGAAGAAAACTTTCAGTTAAAC 57.058 30.769 5.07 0.00 37.47 2.01
4724 9099 4.321230 CCGACTCTTTTCCAGAAAAATGGG 60.321 45.833 6.98 3.53 41.01 4.00
4745 9133 2.452813 CGTTCGCCATTGAGTCCCG 61.453 63.158 0.00 0.00 0.00 5.14
4753 9141 1.878953 AGTTTCAGACGTTCGCCATT 58.121 45.000 0.00 0.00 0.00 3.16
4757 9145 1.774639 TGGTAGTTTCAGACGTTCGC 58.225 50.000 0.00 0.00 0.00 4.70
4780 9169 9.141400 GATTAGAATTATGATGAACCGTCTACC 57.859 37.037 0.00 0.00 0.00 3.18
4839 9228 9.743057 CCATTTTGTATCTACACTTTGTTTTCA 57.257 29.630 0.00 0.00 35.64 2.69
4864 9253 3.553922 CCTCATCGTTGGCTCTCTTATCC 60.554 52.174 0.00 0.00 0.00 2.59
4865 9254 3.068873 ACCTCATCGTTGGCTCTCTTATC 59.931 47.826 0.00 0.00 0.00 1.75
4876 9265 3.261580 TGACTATGCAACCTCATCGTTG 58.738 45.455 0.00 0.00 44.87 4.10
4886 9275 5.409826 AGCTAACTTCAGTTGACTATGCAAC 59.590 40.000 2.26 0.00 46.47 4.17
4899 9288 9.847706 ACATATAATACGATCAGCTAACTTCAG 57.152 33.333 0.00 0.00 0.00 3.02
4975 9376 6.265422 CCACCTTTTCCAACTTTAGACAAGAT 59.735 38.462 0.00 0.00 0.00 2.40
5005 9406 5.410439 GCAAGATGCTGAAATTTTGGAATGT 59.590 36.000 0.00 0.00 40.96 2.71
5012 9413 4.202388 ACCAAGGCAAGATGCTGAAATTTT 60.202 37.500 2.00 0.00 44.28 1.82
5068 9469 3.198853 GGGCTCAGATTGTTCTTCCTAGT 59.801 47.826 0.00 0.00 0.00 2.57
5162 9563 1.654220 CGGCTTTTGTGTGTCCCAG 59.346 57.895 0.00 0.00 0.00 4.45
5187 9588 1.741706 CATTCTGGCCACATCACACTC 59.258 52.381 0.00 0.00 0.00 3.51
5188 9589 1.352017 TCATTCTGGCCACATCACACT 59.648 47.619 0.00 0.00 0.00 3.55
5189 9590 1.825090 TCATTCTGGCCACATCACAC 58.175 50.000 0.00 0.00 0.00 3.82
5190 9591 2.812836 ATCATTCTGGCCACATCACA 57.187 45.000 0.00 0.00 0.00 3.58
5191 9592 4.139786 ACATATCATTCTGGCCACATCAC 58.860 43.478 0.00 0.00 0.00 3.06
5192 9593 4.442401 ACATATCATTCTGGCCACATCA 57.558 40.909 0.00 0.00 0.00 3.07
5193 9594 4.697352 GGTACATATCATTCTGGCCACATC 59.303 45.833 0.00 0.00 0.00 3.06
5196 9597 4.085357 TGGTACATATCATTCTGGCCAC 57.915 45.455 0.00 0.00 0.00 5.01
5218 9619 0.107268 ATCTGATGCGTATGCTGCCA 59.893 50.000 8.69 2.76 43.34 4.92
5219 9620 1.233019 AATCTGATGCGTATGCTGCC 58.767 50.000 8.69 0.00 43.34 4.85
5251 9652 2.986050 TCAGGGGTGTTAAGAGGTCTT 58.014 47.619 0.00 0.00 39.85 3.01
5299 9700 8.095452 ACAAGTTGGATAAATCTCACTAGGAT 57.905 34.615 7.96 0.00 0.00 3.24
5329 9730 9.819267 ATAAACTTTATTTCGAAAACCACCAAA 57.181 25.926 15.66 7.58 0.00 3.28
5345 9746 9.953565 TTTGCTACTACCTGTCATAAACTTTAT 57.046 29.630 0.00 0.00 0.00 1.40
5444 9850 3.135348 TGAGGGTTTATCTGCAGGATGAG 59.865 47.826 15.13 0.00 39.69 2.90
5468 9874 2.597217 TTTGAACAGCGCAGGGGG 60.597 61.111 11.47 0.00 0.00 5.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.