Multiple sequence alignment - TraesCS1A01G210100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G210100 chr1A 100.000 7655 0 0 1 7655 372524023 372531677 0.000000e+00 14137
1 TraesCS1A01G210100 chr1A 84.991 533 41 24 633 1142 518683279 518682763 8.870000e-139 505
2 TraesCS1A01G210100 chr1A 76.993 439 68 20 6456 6864 518682759 518682324 3.600000e-53 220
3 TraesCS1A01G210100 chr1A 83.838 198 30 2 103 299 549612523 549612719 3.650000e-43 187
4 TraesCS1A01G210100 chr1A 89.815 108 11 0 6939 7046 545744053 545743946 1.040000e-28 139
5 TraesCS1A01G210100 chr4A 98.794 5305 63 1 1147 6451 59882782 59877479 0.000000e+00 9441
6 TraesCS1A01G210100 chr4A 92.373 118 9 0 6899 7016 379426120 379426237 1.320000e-37 169
7 TraesCS1A01G210100 chr3A 98.680 5302 66 2 1150 6451 640520893 640515596 0.000000e+00 9400
8 TraesCS1A01G210100 chr3A 93.902 82 5 0 1 82 410123341 410123422 2.900000e-24 124
9 TraesCS1A01G210100 chr1B 98.644 5310 65 3 1147 6452 537414733 537409427 0.000000e+00 9400
10 TraesCS1A01G210100 chr1B 93.250 563 20 6 522 1082 402066642 402067188 0.000000e+00 813
11 TraesCS1A01G210100 chr1B 86.691 541 51 14 7057 7589 402068757 402069284 1.430000e-161 580
12 TraesCS1A01G210100 chr1B 78.801 684 86 32 483 1142 571502171 571501523 9.250000e-109 405
13 TraesCS1A01G210100 chr1B 93.488 215 13 1 6450 6664 402068172 402068385 1.240000e-82 318
14 TraesCS1A01G210100 chr1B 78.971 447 59 14 6450 6889 401143940 401143522 9.790000e-69 272
15 TraesCS1A01G210100 chr1B 80.887 293 36 10 6464 6737 571501511 571501220 6.020000e-51 213
16 TraesCS1A01G210100 chr1B 95.050 101 3 1 6651 6749 402068401 402068501 2.860000e-34 158
17 TraesCS1A01G210100 chr1B 80.000 180 26 8 6469 6643 402050930 402050756 2.900000e-24 124
18 TraesCS1A01G210100 chr1B 92.857 84 6 0 1 84 168989923 168990006 1.040000e-23 122
19 TraesCS1A01G210100 chr1B 95.588 68 2 1 6829 6895 402068663 402068730 2.920000e-19 108
20 TraesCS1A01G210100 chr5B 98.569 5311 70 2 1147 6451 608639199 608644509 0.000000e+00 9382
21 TraesCS1A01G210100 chr5B 93.902 82 5 0 1 82 657162159 657162078 2.900000e-24 124
22 TraesCS1A01G210100 chr6B 98.440 5322 73 8 1138 6454 391064378 391069694 0.000000e+00 9359
23 TraesCS1A01G210100 chr7B 98.493 5309 74 3 1147 6451 378671067 378665761 0.000000e+00 9356
24 TraesCS1A01G210100 chr3B 98.474 5307 76 2 1147 6451 32574983 32569680 0.000000e+00 9347
25 TraesCS1A01G210100 chr3B 98.436 5308 77 3 1147 6451 199961913 199967217 0.000000e+00 9337
26 TraesCS1A01G210100 chr4B 98.437 5309 74 3 1146 6451 245074048 245079350 0.000000e+00 9335
27 TraesCS1A01G210100 chr4B 93.902 82 4 1 1 82 629367341 629367261 1.040000e-23 122
28 TraesCS1A01G210100 chr1D 94.487 653 27 4 495 1146 298635119 298635763 0.000000e+00 998
29 TraesCS1A01G210100 chr1D 93.035 603 32 5 7057 7655 298636255 298636851 0.000000e+00 872
30 TraesCS1A01G210100 chr1D 89.619 472 22 6 6450 6895 298635758 298636228 6.660000e-160 575
31 TraesCS1A01G210100 chr1D 82.422 677 70 28 483 1142 422820601 422819957 5.220000e-151 545
32 TraesCS1A01G210100 chr1D 84.982 546 40 22 619 1142 422737365 422736840 4.100000e-142 516
33 TraesCS1A01G210100 chr1D 87.164 335 34 9 89 415 298623910 298624243 9.380000e-99 372
34 TraesCS1A01G210100 chr1D 77.803 446 66 19 6456 6871 422736836 422736394 2.130000e-60 244
35 TraesCS1A01G210100 chr1D 92.857 154 11 0 6893 7046 98921559 98921712 2.780000e-54 224
36 TraesCS1A01G210100 chr1D 92.857 154 11 0 6893 7046 355501932 355502085 2.780000e-54 224
37 TraesCS1A01G210100 chr1D 86.458 192 26 0 6456 6647 422819953 422819762 2.160000e-50 211
38 TraesCS1A01G210100 chr1D 95.402 87 2 2 413 498 298624991 298625076 3.730000e-28 137
39 TraesCS1A01G210100 chr1D 93.976 83 5 0 1 83 98752523 98752441 8.060000e-25 126
40 TraesCS1A01G210100 chr1D 80.473 169 25 6 6479 6643 298619937 298619773 1.040000e-23 122
41 TraesCS1A01G210100 chr3D 92.857 154 11 0 6893 7046 131238156 131238309 2.780000e-54 224
42 TraesCS1A01G210100 chr3D 92.771 83 6 0 1 83 179276198 179276280 3.750000e-23 121
43 TraesCS1A01G210100 chr5D 92.208 154 12 0 6893 7046 310031553 310031400 1.290000e-52 219
44 TraesCS1A01G210100 chr5D 79.422 277 47 5 99 366 485764860 485764585 3.650000e-43 187
45 TraesCS1A01G210100 chr5D 92.857 84 6 0 1 84 116197533 116197450 1.040000e-23 122
46 TraesCS1A01G210100 chr4D 92.208 154 12 0 6893 7046 433958385 433958538 1.290000e-52 219
47 TraesCS1A01G210100 chr2D 91.720 157 11 2 6891 7046 353152300 353152145 4.650000e-52 217
48 TraesCS1A01G210100 chr2A 85.811 148 21 0 6899 7046 775271508 775271361 2.860000e-34 158
49 TraesCS1A01G210100 chr2A 92.857 84 6 0 1 84 591908133 591908216 1.040000e-23 122
50 TraesCS1A01G210100 chr2A 90.909 88 8 0 1 88 347918097 347918010 1.350000e-22 119
51 TraesCS1A01G210100 chr2B 78.166 229 41 8 144 366 131194876 131194651 3.730000e-28 137
52 TraesCS1A01G210100 chr6A 77.561 205 41 5 165 366 471177991 471177789 1.350000e-22 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G210100 chr1A 372524023 372531677 7654 False 14137.0 14137 100.000000 1 7655 1 chr1A.!!$F1 7654
1 TraesCS1A01G210100 chr1A 518682324 518683279 955 True 362.5 505 80.992000 633 6864 2 chr1A.!!$R2 6231
2 TraesCS1A01G210100 chr4A 59877479 59882782 5303 True 9441.0 9441 98.794000 1147 6451 1 chr4A.!!$R1 5304
3 TraesCS1A01G210100 chr3A 640515596 640520893 5297 True 9400.0 9400 98.680000 1150 6451 1 chr3A.!!$R1 5301
4 TraesCS1A01G210100 chr1B 537409427 537414733 5306 True 9400.0 9400 98.644000 1147 6452 1 chr1B.!!$R3 5305
5 TraesCS1A01G210100 chr1B 402066642 402069284 2642 False 395.4 813 92.813400 522 7589 5 chr1B.!!$F2 7067
6 TraesCS1A01G210100 chr1B 571501220 571502171 951 True 309.0 405 79.844000 483 6737 2 chr1B.!!$R4 6254
7 TraesCS1A01G210100 chr5B 608639199 608644509 5310 False 9382.0 9382 98.569000 1147 6451 1 chr5B.!!$F1 5304
8 TraesCS1A01G210100 chr6B 391064378 391069694 5316 False 9359.0 9359 98.440000 1138 6454 1 chr6B.!!$F1 5316
9 TraesCS1A01G210100 chr7B 378665761 378671067 5306 True 9356.0 9356 98.493000 1147 6451 1 chr7B.!!$R1 5304
10 TraesCS1A01G210100 chr3B 32569680 32574983 5303 True 9347.0 9347 98.474000 1147 6451 1 chr3B.!!$R1 5304
11 TraesCS1A01G210100 chr3B 199961913 199967217 5304 False 9337.0 9337 98.436000 1147 6451 1 chr3B.!!$F1 5304
12 TraesCS1A01G210100 chr4B 245074048 245079350 5302 False 9335.0 9335 98.437000 1146 6451 1 chr4B.!!$F1 5305
13 TraesCS1A01G210100 chr1D 298635119 298636851 1732 False 815.0 998 92.380333 495 7655 3 chr1D.!!$F4 7160
14 TraesCS1A01G210100 chr1D 422736394 422737365 971 True 380.0 516 81.392500 619 6871 2 chr1D.!!$R3 6252
15 TraesCS1A01G210100 chr1D 422819762 422820601 839 True 378.0 545 84.440000 483 6647 2 chr1D.!!$R4 6164
16 TraesCS1A01G210100 chr1D 298623910 298625076 1166 False 254.5 372 91.283000 89 498 2 chr1D.!!$F3 409

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
382 383 0.034337 GCACGAGGTGTCTTTGGGTA 59.966 55.000 0.00 0.0 35.75 3.69 F
854 869 0.109532 TCACACCGCTTTCCCATTGA 59.890 50.000 0.00 0.0 0.00 2.57 F
2034 3017 0.618968 AGGCGAACCTCTCCTCCATT 60.619 55.000 0.00 0.0 46.34 3.16 F
2669 3652 0.370273 GACGGCAAAGATACACGCAG 59.630 55.000 0.00 0.0 0.00 5.18 F
2809 3792 0.393537 CAGCGAGATGGGGAAGCTTT 60.394 55.000 0.00 0.0 35.82 3.51 F
3592 4581 1.765314 AGTCGCTTGGGATAGCTCATT 59.235 47.619 0.00 0.0 39.03 2.57 F
4201 5247 2.358737 CTTCTGGTGGGCACGTCC 60.359 66.667 0.00 0.0 0.00 4.79 F
5686 6754 1.819288 ACTTGACGATCACGAGACCAT 59.181 47.619 10.07 0.0 42.66 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2182 3165 0.836606 TCAGTGGCAGTGGAGTCAAA 59.163 50.000 21.53 0.00 0.00 2.69 R
2635 3618 0.958091 CCGTCATTGCCAAGACCAAA 59.042 50.000 0.00 0.00 0.00 3.28 R
3354 4337 1.265236 CAGAAGTCTGAGCAGGACCT 58.735 55.000 1.88 0.00 46.59 3.85 R
4201 5247 0.594602 CCATGCAACATAGGGCGATG 59.405 55.000 0.00 0.00 0.00 3.84 R
4540 5608 1.001764 TAGCCTCGGACTCGGTTGA 60.002 57.895 0.00 0.00 36.95 3.18 R
4864 5932 2.602676 CCCGTGGTGGTGGAGGAAT 61.603 63.158 0.00 0.00 35.15 3.01 R
5724 6792 0.678950 GAGTATCTCTGGGAGCCTGC 59.321 60.000 0.00 0.00 0.00 4.85 R
6976 8198 0.041576 CACATCAAGCCATCGATGCG 60.042 55.000 20.25 13.83 42.28 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 9.793252 AATGTGAAAACATTTATGATAGCACTC 57.207 29.630 0.00 0.00 37.03 3.51
48 49 8.334263 TGTGAAAACATTTATGATAGCACTCA 57.666 30.769 0.00 0.00 0.00 3.41
49 50 8.453320 TGTGAAAACATTTATGATAGCACTCAG 58.547 33.333 0.00 0.00 0.00 3.35
50 51 8.454106 GTGAAAACATTTATGATAGCACTCAGT 58.546 33.333 0.00 0.00 0.00 3.41
51 52 9.013229 TGAAAACATTTATGATAGCACTCAGTT 57.987 29.630 0.00 0.00 0.00 3.16
52 53 9.846248 GAAAACATTTATGATAGCACTCAGTTT 57.154 29.630 0.00 0.00 0.00 2.66
53 54 9.846248 AAAACATTTATGATAGCACTCAGTTTC 57.154 29.630 0.00 0.00 0.00 2.78
54 55 7.239166 ACATTTATGATAGCACTCAGTTTCG 57.761 36.000 0.00 0.00 0.00 3.46
55 56 6.818644 ACATTTATGATAGCACTCAGTTTCGT 59.181 34.615 0.00 0.00 0.00 3.85
56 57 6.887376 TTTATGATAGCACTCAGTTTCGTC 57.113 37.500 0.00 0.00 0.00 4.20
57 58 3.232213 TGATAGCACTCAGTTTCGTCC 57.768 47.619 0.00 0.00 0.00 4.79
58 59 2.186076 GATAGCACTCAGTTTCGTCCG 58.814 52.381 0.00 0.00 0.00 4.79
59 60 0.956633 TAGCACTCAGTTTCGTCCGT 59.043 50.000 0.00 0.00 0.00 4.69
60 61 0.104304 AGCACTCAGTTTCGTCCGTT 59.896 50.000 0.00 0.00 0.00 4.44
61 62 0.935196 GCACTCAGTTTCGTCCGTTT 59.065 50.000 0.00 0.00 0.00 3.60
62 63 1.070776 GCACTCAGTTTCGTCCGTTTC 60.071 52.381 0.00 0.00 0.00 2.78
63 64 1.525619 CACTCAGTTTCGTCCGTTTCC 59.474 52.381 0.00 0.00 0.00 3.13
64 65 0.782384 CTCAGTTTCGTCCGTTTCCG 59.218 55.000 0.00 0.00 0.00 4.30
65 66 1.203313 CAGTTTCGTCCGTTTCCGC 59.797 57.895 0.00 0.00 0.00 5.54
66 67 1.068585 AGTTTCGTCCGTTTCCGCT 59.931 52.632 0.00 0.00 0.00 5.52
67 68 0.942884 AGTTTCGTCCGTTTCCGCTC 60.943 55.000 0.00 0.00 0.00 5.03
68 69 1.665599 TTTCGTCCGTTTCCGCTCC 60.666 57.895 0.00 0.00 0.00 4.70
69 70 3.902162 TTCGTCCGTTTCCGCTCCG 62.902 63.158 0.00 0.00 0.00 4.63
70 71 4.712425 CGTCCGTTTCCGCTCCGT 62.712 66.667 0.00 0.00 0.00 4.69
71 72 2.356673 GTCCGTTTCCGCTCCGTT 60.357 61.111 0.00 0.00 0.00 4.44
72 73 1.957695 GTCCGTTTCCGCTCCGTTT 60.958 57.895 0.00 0.00 0.00 3.60
73 74 1.227615 TCCGTTTCCGCTCCGTTTT 60.228 52.632 0.00 0.00 0.00 2.43
74 75 1.205820 CCGTTTCCGCTCCGTTTTC 59.794 57.895 0.00 0.00 0.00 2.29
75 76 1.500512 CCGTTTCCGCTCCGTTTTCA 61.501 55.000 0.00 0.00 0.00 2.69
76 77 0.515564 CGTTTCCGCTCCGTTTTCAT 59.484 50.000 0.00 0.00 0.00 2.57
77 78 1.463528 CGTTTCCGCTCCGTTTTCATC 60.464 52.381 0.00 0.00 0.00 2.92
78 79 1.135774 GTTTCCGCTCCGTTTTCATCC 60.136 52.381 0.00 0.00 0.00 3.51
79 80 0.675522 TTCCGCTCCGTTTTCATCCC 60.676 55.000 0.00 0.00 0.00 3.85
80 81 1.078426 CCGCTCCGTTTTCATCCCT 60.078 57.895 0.00 0.00 0.00 4.20
81 82 0.177141 CCGCTCCGTTTTCATCCCTA 59.823 55.000 0.00 0.00 0.00 3.53
82 83 1.571919 CGCTCCGTTTTCATCCCTAG 58.428 55.000 0.00 0.00 0.00 3.02
83 84 1.300481 GCTCCGTTTTCATCCCTAGC 58.700 55.000 0.00 0.00 0.00 3.42
84 85 1.571919 CTCCGTTTTCATCCCTAGCG 58.428 55.000 0.00 0.00 0.00 4.26
85 86 1.136305 CTCCGTTTTCATCCCTAGCGA 59.864 52.381 0.00 0.00 0.00 4.93
86 87 1.134907 TCCGTTTTCATCCCTAGCGAC 60.135 52.381 0.00 0.00 0.00 5.19
87 88 1.404986 CCGTTTTCATCCCTAGCGACA 60.405 52.381 0.00 0.00 0.00 4.35
92 93 0.681887 TCATCCCTAGCGACACCGAA 60.682 55.000 0.00 0.00 38.22 4.30
141 142 2.756283 AGAAGGCGGTCGAGGAGG 60.756 66.667 0.00 0.00 0.00 4.30
142 143 4.516195 GAAGGCGGTCGAGGAGGC 62.516 72.222 0.00 0.00 0.00 4.70
170 171 3.804193 GCTGCTGCTACGGCCAAC 61.804 66.667 8.53 0.00 35.83 3.77
171 172 2.046892 CTGCTGCTACGGCCAACT 60.047 61.111 2.24 0.00 37.74 3.16
172 173 2.358615 TGCTGCTACGGCCAACTG 60.359 61.111 2.24 0.00 37.74 3.16
173 174 3.127533 GCTGCTACGGCCAACTGG 61.128 66.667 2.24 0.00 37.74 4.00
174 175 2.662596 CTGCTACGGCCAACTGGA 59.337 61.111 2.24 0.00 37.39 3.86
175 176 1.741770 CTGCTACGGCCAACTGGAC 60.742 63.158 2.24 0.00 40.84 4.02
183 184 1.660167 GGCCAACTGGACGGTATAAC 58.340 55.000 0.00 0.00 37.39 1.89
184 185 1.065998 GGCCAACTGGACGGTATAACA 60.066 52.381 0.00 0.00 37.39 2.41
185 186 2.420967 GGCCAACTGGACGGTATAACAT 60.421 50.000 0.00 0.00 37.39 2.71
186 187 2.612212 GCCAACTGGACGGTATAACATG 59.388 50.000 0.00 0.00 37.39 3.21
187 188 3.869065 CCAACTGGACGGTATAACATGT 58.131 45.455 0.00 0.00 37.39 3.21
188 189 4.258543 CCAACTGGACGGTATAACATGTT 58.741 43.478 16.68 16.68 37.39 2.71
189 190 4.698304 CCAACTGGACGGTATAACATGTTT 59.302 41.667 17.78 7.40 37.39 2.83
190 191 5.875910 CCAACTGGACGGTATAACATGTTTA 59.124 40.000 17.78 6.41 37.39 2.01
191 192 6.540914 CCAACTGGACGGTATAACATGTTTAT 59.459 38.462 17.78 10.48 37.39 1.40
192 193 7.254658 CCAACTGGACGGTATAACATGTTTATC 60.255 40.741 17.78 8.41 37.39 1.75
193 194 6.285990 ACTGGACGGTATAACATGTTTATCC 58.714 40.000 17.78 14.46 0.00 2.59
194 195 5.613329 TGGACGGTATAACATGTTTATCCC 58.387 41.667 17.78 10.71 0.00 3.85
195 196 4.687483 GGACGGTATAACATGTTTATCCCG 59.313 45.833 24.66 24.66 38.81 5.14
196 197 4.060205 ACGGTATAACATGTTTATCCCGC 58.940 43.478 25.51 9.85 36.46 6.13
197 198 4.202284 ACGGTATAACATGTTTATCCCGCT 60.202 41.667 25.51 16.17 36.46 5.52
198 199 4.387862 CGGTATAACATGTTTATCCCGCTC 59.612 45.833 17.78 0.00 0.00 5.03
199 200 5.548406 GGTATAACATGTTTATCCCGCTCT 58.452 41.667 17.78 0.00 0.00 4.09
200 201 5.995897 GGTATAACATGTTTATCCCGCTCTT 59.004 40.000 17.78 0.00 0.00 2.85
201 202 6.073222 GGTATAACATGTTTATCCCGCTCTTG 60.073 42.308 17.78 0.00 0.00 3.02
202 203 3.350219 ACATGTTTATCCCGCTCTTGT 57.650 42.857 0.00 0.00 0.00 3.16
203 204 3.686016 ACATGTTTATCCCGCTCTTGTT 58.314 40.909 0.00 0.00 0.00 2.83
204 205 4.079253 ACATGTTTATCCCGCTCTTGTTT 58.921 39.130 0.00 0.00 0.00 2.83
205 206 4.522789 ACATGTTTATCCCGCTCTTGTTTT 59.477 37.500 0.00 0.00 0.00 2.43
206 207 5.010617 ACATGTTTATCCCGCTCTTGTTTTT 59.989 36.000 0.00 0.00 0.00 1.94
231 232 9.681062 TTTTTGTCTTAGCCATACTAGCTATTT 57.319 29.630 0.00 0.00 42.21 1.40
232 233 8.662781 TTTGTCTTAGCCATACTAGCTATTTG 57.337 34.615 0.00 0.00 42.21 2.32
233 234 7.361457 TGTCTTAGCCATACTAGCTATTTGT 57.639 36.000 0.00 0.00 42.21 2.83
234 235 8.473358 TGTCTTAGCCATACTAGCTATTTGTA 57.527 34.615 0.00 0.00 42.21 2.41
235 236 9.090103 TGTCTTAGCCATACTAGCTATTTGTAT 57.910 33.333 0.00 0.00 42.21 2.29
266 267 8.442632 TTTCTACTATATGTGTAGTACGTGCT 57.557 34.615 11.87 11.87 38.67 4.40
267 268 8.442632 TTCTACTATATGTGTAGTACGTGCTT 57.557 34.615 12.53 0.00 38.67 3.91
268 269 9.546428 TTCTACTATATGTGTAGTACGTGCTTA 57.454 33.333 12.53 0.00 38.67 3.09
269 270 9.716531 TCTACTATATGTGTAGTACGTGCTTAT 57.283 33.333 12.53 5.79 38.67 1.73
276 277 8.798748 ATGTGTAGTACGTGCTTATTTAGATC 57.201 34.615 12.53 0.00 0.00 2.75
277 278 6.908820 TGTGTAGTACGTGCTTATTTAGATCG 59.091 38.462 12.53 0.00 0.00 3.69
278 279 5.911280 TGTAGTACGTGCTTATTTAGATCGC 59.089 40.000 12.53 0.00 0.00 4.58
279 280 4.928601 AGTACGTGCTTATTTAGATCGCA 58.071 39.130 0.00 0.00 0.00 5.10
280 281 5.345702 AGTACGTGCTTATTTAGATCGCAA 58.654 37.500 0.00 0.00 31.77 4.85
281 282 5.983720 AGTACGTGCTTATTTAGATCGCAAT 59.016 36.000 0.00 0.00 31.77 3.56
282 283 5.330271 ACGTGCTTATTTAGATCGCAATC 57.670 39.130 0.00 0.00 31.77 2.67
283 284 4.808895 ACGTGCTTATTTAGATCGCAATCA 59.191 37.500 0.00 0.00 34.07 2.57
284 285 5.050769 ACGTGCTTATTTAGATCGCAATCAG 60.051 40.000 0.00 0.00 34.07 2.90
285 286 5.050769 CGTGCTTATTTAGATCGCAATCAGT 60.051 40.000 0.00 0.00 34.07 3.41
286 287 6.143919 CGTGCTTATTTAGATCGCAATCAGTA 59.856 38.462 0.00 0.00 34.07 2.74
287 288 7.148738 CGTGCTTATTTAGATCGCAATCAGTAT 60.149 37.037 0.00 0.00 34.07 2.12
288 289 9.140286 GTGCTTATTTAGATCGCAATCAGTATA 57.860 33.333 0.00 0.00 34.07 1.47
289 290 9.875691 TGCTTATTTAGATCGCAATCAGTATAT 57.124 29.630 0.00 0.00 34.07 0.86
315 316 9.978044 TCATTAATTTTGTCAATGTCATGTTCA 57.022 25.926 0.00 0.00 32.64 3.18
318 319 9.978044 TTAATTTTGTCAATGTCATGTTCATGA 57.022 25.926 10.88 10.88 0.00 3.07
320 321 9.496873 AATTTTGTCAATGTCATGTTCATGATT 57.503 25.926 16.75 7.16 32.61 2.57
364 365 8.707938 ATTGAAAAATTGCCTATTTACTCAGC 57.292 30.769 0.00 0.00 35.39 4.26
365 366 7.225784 TGAAAAATTGCCTATTTACTCAGCA 57.774 32.000 0.00 0.00 35.39 4.41
366 367 7.090173 TGAAAAATTGCCTATTTACTCAGCAC 58.910 34.615 0.00 0.00 35.39 4.40
367 368 4.882671 AATTGCCTATTTACTCAGCACG 57.117 40.909 0.00 0.00 32.18 5.34
368 369 3.603158 TTGCCTATTTACTCAGCACGA 57.397 42.857 0.00 0.00 32.18 4.35
369 370 6.403636 AAAATTGCCTATTTACTCAGCACGAG 60.404 38.462 0.00 1.85 40.42 4.18
370 371 2.159099 TGCCTATTTACTCAGCACGAGG 60.159 50.000 7.93 0.00 46.98 4.63
371 372 2.159085 GCCTATTTACTCAGCACGAGGT 60.159 50.000 7.93 0.00 46.98 3.85
372 373 3.448686 CCTATTTACTCAGCACGAGGTG 58.551 50.000 5.64 5.64 46.98 4.00
373 374 3.119101 CCTATTTACTCAGCACGAGGTGT 60.119 47.826 11.73 0.00 46.98 4.16
374 375 2.433868 TTTACTCAGCACGAGGTGTC 57.566 50.000 11.73 0.00 46.98 3.67
375 376 1.617322 TTACTCAGCACGAGGTGTCT 58.383 50.000 11.73 1.42 46.98 3.41
376 377 1.617322 TACTCAGCACGAGGTGTCTT 58.383 50.000 11.73 0.87 46.98 3.01
377 378 0.753262 ACTCAGCACGAGGTGTCTTT 59.247 50.000 11.73 0.00 46.98 2.52
378 379 1.143305 CTCAGCACGAGGTGTCTTTG 58.857 55.000 11.73 0.00 43.57 2.77
379 380 0.249868 TCAGCACGAGGTGTCTTTGG 60.250 55.000 11.73 0.00 43.57 3.28
380 381 1.071471 AGCACGAGGTGTCTTTGGG 59.929 57.895 0.00 0.00 35.75 4.12
381 382 1.227853 GCACGAGGTGTCTTTGGGT 60.228 57.895 0.00 0.00 35.75 4.51
382 383 0.034337 GCACGAGGTGTCTTTGGGTA 59.966 55.000 0.00 0.00 35.75 3.69
383 384 1.541670 GCACGAGGTGTCTTTGGGTAA 60.542 52.381 0.00 0.00 35.75 2.85
384 385 2.841215 CACGAGGTGTCTTTGGGTAAA 58.159 47.619 0.00 0.00 0.00 2.01
385 386 2.546789 CACGAGGTGTCTTTGGGTAAAC 59.453 50.000 0.00 0.00 0.00 2.01
386 387 2.436911 ACGAGGTGTCTTTGGGTAAACT 59.563 45.455 0.00 0.00 0.00 2.66
387 388 2.806244 CGAGGTGTCTTTGGGTAAACTG 59.194 50.000 0.00 0.00 0.00 3.16
388 389 3.743269 CGAGGTGTCTTTGGGTAAACTGT 60.743 47.826 0.00 0.00 0.00 3.55
389 390 4.501915 CGAGGTGTCTTTGGGTAAACTGTA 60.502 45.833 0.00 0.00 0.00 2.74
390 391 5.557866 GAGGTGTCTTTGGGTAAACTGTAT 58.442 41.667 0.00 0.00 0.00 2.29
391 392 5.948842 AGGTGTCTTTGGGTAAACTGTATT 58.051 37.500 0.00 0.00 0.00 1.89
392 393 6.002082 AGGTGTCTTTGGGTAAACTGTATTC 58.998 40.000 0.00 0.00 0.00 1.75
393 394 5.182570 GGTGTCTTTGGGTAAACTGTATTCC 59.817 44.000 0.00 0.00 0.00 3.01
394 395 5.766174 GTGTCTTTGGGTAAACTGTATTCCA 59.234 40.000 0.00 0.00 0.00 3.53
395 396 6.433093 GTGTCTTTGGGTAAACTGTATTCCAT 59.567 38.462 0.00 0.00 0.00 3.41
396 397 6.657541 TGTCTTTGGGTAAACTGTATTCCATC 59.342 38.462 0.00 0.00 0.00 3.51
397 398 6.884836 GTCTTTGGGTAAACTGTATTCCATCT 59.115 38.462 0.00 0.00 0.00 2.90
398 399 7.393515 GTCTTTGGGTAAACTGTATTCCATCTT 59.606 37.037 0.00 0.00 0.00 2.40
399 400 7.947890 TCTTTGGGTAAACTGTATTCCATCTTT 59.052 33.333 0.00 0.00 0.00 2.52
400 401 8.485578 TTTGGGTAAACTGTATTCCATCTTTT 57.514 30.769 0.00 0.00 0.00 2.27
401 402 7.696992 TGGGTAAACTGTATTCCATCTTTTC 57.303 36.000 0.00 0.00 0.00 2.29
402 403 7.466804 TGGGTAAACTGTATTCCATCTTTTCT 58.533 34.615 0.00 0.00 0.00 2.52
403 404 7.947890 TGGGTAAACTGTATTCCATCTTTTCTT 59.052 33.333 0.00 0.00 0.00 2.52
404 405 8.244113 GGGTAAACTGTATTCCATCTTTTCTTG 58.756 37.037 0.00 0.00 0.00 3.02
405 406 7.755373 GGTAAACTGTATTCCATCTTTTCTTGC 59.245 37.037 0.00 0.00 0.00 4.01
406 407 7.530426 AAACTGTATTCCATCTTTTCTTGCT 57.470 32.000 0.00 0.00 0.00 3.91
407 408 6.506500 ACTGTATTCCATCTTTTCTTGCTG 57.493 37.500 0.00 0.00 0.00 4.41
408 409 6.240894 ACTGTATTCCATCTTTTCTTGCTGA 58.759 36.000 0.00 0.00 0.00 4.26
409 410 6.888632 ACTGTATTCCATCTTTTCTTGCTGAT 59.111 34.615 0.00 0.00 0.00 2.90
410 411 7.092137 TGTATTCCATCTTTTCTTGCTGATG 57.908 36.000 0.00 0.00 36.87 3.07
411 412 6.660521 TGTATTCCATCTTTTCTTGCTGATGT 59.339 34.615 0.00 0.00 35.76 3.06
412 413 6.600882 ATTCCATCTTTTCTTGCTGATGTT 57.399 33.333 0.00 0.00 35.76 2.71
413 414 5.633830 TCCATCTTTTCTTGCTGATGTTC 57.366 39.130 0.00 0.00 35.76 3.18
414 415 5.319453 TCCATCTTTTCTTGCTGATGTTCT 58.681 37.500 0.00 0.00 35.76 3.01
415 416 5.182570 TCCATCTTTTCTTGCTGATGTTCTG 59.817 40.000 0.00 0.00 35.76 3.02
416 417 4.494350 TCTTTTCTTGCTGATGTTCTGC 57.506 40.909 0.03 0.03 41.04 4.26
417 418 2.975410 TTTCTTGCTGATGTTCTGCG 57.025 45.000 2.61 0.00 43.17 5.18
418 419 1.159285 TTCTTGCTGATGTTCTGCGG 58.841 50.000 2.61 0.00 43.17 5.69
419 420 1.136147 CTTGCTGATGTTCTGCGGC 59.864 57.895 0.00 0.00 43.17 6.53
420 421 1.579964 CTTGCTGATGTTCTGCGGCA 61.580 55.000 1.29 1.29 43.17 5.69
421 422 0.961857 TTGCTGATGTTCTGCGGCAT 60.962 50.000 1.75 0.00 44.98 4.40
422 423 1.063649 GCTGATGTTCTGCGGCATG 59.936 57.895 1.75 0.00 36.43 4.06
423 424 1.371337 GCTGATGTTCTGCGGCATGA 61.371 55.000 1.75 0.14 36.43 3.07
424 425 1.306148 CTGATGTTCTGCGGCATGAT 58.694 50.000 1.75 0.00 0.00 2.45
425 426 1.674441 CTGATGTTCTGCGGCATGATT 59.326 47.619 1.75 0.00 0.00 2.57
426 427 1.402613 TGATGTTCTGCGGCATGATTG 59.597 47.619 1.75 0.00 0.00 2.67
427 428 1.402968 GATGTTCTGCGGCATGATTGT 59.597 47.619 1.75 0.00 0.00 2.71
428 429 2.106477 TGTTCTGCGGCATGATTGTA 57.894 45.000 1.75 0.00 0.00 2.41
429 430 2.431454 TGTTCTGCGGCATGATTGTAA 58.569 42.857 1.75 0.00 0.00 2.41
430 431 3.016031 TGTTCTGCGGCATGATTGTAAT 58.984 40.909 1.75 0.00 0.00 1.89
431 432 3.443329 TGTTCTGCGGCATGATTGTAATT 59.557 39.130 1.75 0.00 0.00 1.40
432 433 3.969117 TCTGCGGCATGATTGTAATTC 57.031 42.857 1.75 0.00 0.00 2.17
433 434 3.544684 TCTGCGGCATGATTGTAATTCT 58.455 40.909 1.75 0.00 0.00 2.40
434 435 3.313249 TCTGCGGCATGATTGTAATTCTG 59.687 43.478 1.75 0.00 0.00 3.02
435 436 2.358582 TGCGGCATGATTGTAATTCTGG 59.641 45.455 0.00 0.00 0.00 3.86
436 437 2.859806 GCGGCATGATTGTAATTCTGGC 60.860 50.000 0.00 0.00 0.00 4.85
437 438 2.620115 CGGCATGATTGTAATTCTGGCT 59.380 45.455 0.00 0.00 0.00 4.75
438 439 3.814842 CGGCATGATTGTAATTCTGGCTA 59.185 43.478 0.00 0.00 0.00 3.93
439 440 4.275689 CGGCATGATTGTAATTCTGGCTAA 59.724 41.667 0.00 0.00 0.00 3.09
440 441 5.561532 CGGCATGATTGTAATTCTGGCTAAG 60.562 44.000 0.00 0.00 0.00 2.18
441 442 5.218139 GCATGATTGTAATTCTGGCTAAGC 58.782 41.667 0.00 0.00 0.00 3.09
442 443 5.221106 GCATGATTGTAATTCTGGCTAAGCA 60.221 40.000 0.00 0.00 0.00 3.91
443 444 6.516194 GCATGATTGTAATTCTGGCTAAGCAT 60.516 38.462 0.00 0.00 0.00 3.79
444 445 6.624352 TGATTGTAATTCTGGCTAAGCATC 57.376 37.500 0.00 0.00 0.00 3.91
445 446 6.121590 TGATTGTAATTCTGGCTAAGCATCA 58.878 36.000 0.00 0.00 0.00 3.07
446 447 6.602803 TGATTGTAATTCTGGCTAAGCATCAA 59.397 34.615 0.00 0.00 0.00 2.57
447 448 7.286087 TGATTGTAATTCTGGCTAAGCATCAAT 59.714 33.333 0.00 0.00 0.00 2.57
448 449 7.408756 TTGTAATTCTGGCTAAGCATCAATT 57.591 32.000 0.00 0.00 0.00 2.32
449 450 8.518430 TTGTAATTCTGGCTAAGCATCAATTA 57.482 30.769 0.00 0.00 0.00 1.40
450 451 8.518430 TGTAATTCTGGCTAAGCATCAATTAA 57.482 30.769 0.00 0.00 0.00 1.40
451 452 9.135189 TGTAATTCTGGCTAAGCATCAATTAAT 57.865 29.630 0.00 0.00 0.00 1.40
455 456 7.206981 TCTGGCTAAGCATCAATTAATAAGC 57.793 36.000 0.00 0.00 0.00 3.09
456 457 6.207417 TCTGGCTAAGCATCAATTAATAAGCC 59.793 38.462 0.00 0.00 45.69 4.35
457 458 5.243730 TGGCTAAGCATCAATTAATAAGCCC 59.756 40.000 7.04 0.00 45.05 5.19
458 459 5.393962 GCTAAGCATCAATTAATAAGCCCG 58.606 41.667 0.00 0.00 0.00 6.13
459 460 5.048713 GCTAAGCATCAATTAATAAGCCCGT 60.049 40.000 0.00 0.00 0.00 5.28
460 461 5.852282 AAGCATCAATTAATAAGCCCGTT 57.148 34.783 0.00 0.00 0.00 4.44
461 462 5.186996 AGCATCAATTAATAAGCCCGTTG 57.813 39.130 0.00 0.00 0.00 4.10
462 463 4.887071 AGCATCAATTAATAAGCCCGTTGA 59.113 37.500 0.00 0.00 0.00 3.18
463 464 5.536161 AGCATCAATTAATAAGCCCGTTGAT 59.464 36.000 0.00 0.00 36.91 2.57
464 465 6.040842 AGCATCAATTAATAAGCCCGTTGATT 59.959 34.615 0.00 0.00 34.96 2.57
465 466 6.363357 GCATCAATTAATAAGCCCGTTGATTC 59.637 38.462 0.00 0.00 34.96 2.52
466 467 6.055231 TCAATTAATAAGCCCGTTGATTCG 57.945 37.500 0.00 0.00 0.00 3.34
467 468 5.818336 TCAATTAATAAGCCCGTTGATTCGA 59.182 36.000 0.00 0.00 0.00 3.71
468 469 6.316640 TCAATTAATAAGCCCGTTGATTCGAA 59.683 34.615 0.00 0.00 0.00 3.71
469 470 6.687081 ATTAATAAGCCCGTTGATTCGAAA 57.313 33.333 0.00 0.00 0.00 3.46
470 471 6.497785 TTAATAAGCCCGTTGATTCGAAAA 57.502 33.333 0.00 0.00 0.00 2.29
471 472 5.379732 AATAAGCCCGTTGATTCGAAAAA 57.620 34.783 0.00 0.00 0.00 1.94
488 489 1.605753 AAAAAGGAGTGAGGTTCGGC 58.394 50.000 0.00 0.00 0.00 5.54
490 491 0.693049 AAAGGAGTGAGGTTCGGCAT 59.307 50.000 0.00 0.00 0.00 4.40
514 515 4.645136 CAGCTAATATATCGGACCAGGCTA 59.355 45.833 0.00 0.00 0.00 3.93
595 600 8.084590 TCAATTCATCATCATCTGAATTCTCG 57.915 34.615 7.05 0.00 44.66 4.04
677 683 2.954318 GCCACATGCTCAATCCAGTAAT 59.046 45.455 0.00 0.00 36.87 1.89
678 684 4.136796 GCCACATGCTCAATCCAGTAATA 58.863 43.478 0.00 0.00 36.87 0.98
679 685 4.580167 GCCACATGCTCAATCCAGTAATAA 59.420 41.667 0.00 0.00 36.87 1.40
713 721 1.271325 TGAACTGGACGGAACATGCAT 60.271 47.619 0.00 0.00 0.00 3.96
725 733 5.179368 ACGGAACATGCATTCGGAATATAAG 59.821 40.000 12.86 0.00 34.11 1.73
774 782 3.123050 TGCATACGATCGAGTCCAAATG 58.877 45.455 24.34 13.04 0.00 2.32
789 797 5.305128 AGTCCAAATGAAAAGAGGCAATCAA 59.695 36.000 0.00 0.00 0.00 2.57
854 869 0.109532 TCACACCGCTTTCCCATTGA 59.890 50.000 0.00 0.00 0.00 2.57
867 882 1.097232 CCATTGAAGGCGAGCAATCA 58.903 50.000 0.00 0.00 32.74 2.57
871 894 2.408271 TGAAGGCGAGCAATCAGATT 57.592 45.000 0.00 0.00 0.00 2.40
882 906 4.205587 AGCAATCAGATTCACAATCTCCC 58.794 43.478 0.00 0.00 46.20 4.30
984 1029 0.950555 TAGCTTTGCTGCACGACCTG 60.951 55.000 0.00 0.00 40.10 4.00
1109 2082 2.747855 CAAGGACGGGCTGAAGGC 60.748 66.667 0.00 0.00 40.90 4.35
1275 2248 9.016438 GTTCCCCAAAACTTATTGTCTTACATA 57.984 33.333 0.00 0.00 0.00 2.29
1285 2258 8.410912 ACTTATTGTCTTACATAGTATCACGCA 58.589 33.333 0.00 0.00 0.00 5.24
1464 2447 4.193334 CCGCTCGATGCCGTCTCA 62.193 66.667 0.00 0.00 38.78 3.27
2034 3017 0.618968 AGGCGAACCTCTCCTCCATT 60.619 55.000 0.00 0.00 46.34 3.16
2182 3165 2.036992 CAGCTTGGAGAGTGTCAGAAGT 59.963 50.000 0.00 0.00 0.00 3.01
2669 3652 0.370273 GACGGCAAAGATACACGCAG 59.630 55.000 0.00 0.00 0.00 5.18
2729 3712 1.901591 CAGAAGCAACAGGGACACAT 58.098 50.000 0.00 0.00 0.00 3.21
2809 3792 0.393537 CAGCGAGATGGGGAAGCTTT 60.394 55.000 0.00 0.00 35.82 3.51
3354 4337 9.554395 TTAGAACTTGTGTTTTCAGATGTATGA 57.446 29.630 0.00 0.00 36.39 2.15
3592 4581 1.765314 AGTCGCTTGGGATAGCTCATT 59.235 47.619 0.00 0.00 39.03 2.57
3782 4771 6.206498 GTGTTTTAAACATGAAGACTCCCAC 58.794 40.000 13.84 0.00 44.35 4.61
4201 5247 2.358737 CTTCTGGTGGGCACGTCC 60.359 66.667 0.00 0.00 0.00 4.79
4344 5390 4.351938 CCCGTCACGCCGTCTTCA 62.352 66.667 0.00 0.00 0.00 3.02
4540 5608 2.920912 TGGGTCGGCCTTCTTCGT 60.921 61.111 5.77 0.00 34.45 3.85
4864 5932 3.824443 TCGTAACAAGACATGGACTCTCA 59.176 43.478 0.00 0.00 0.00 3.27
5464 6532 5.249420 GGAAGCTTCACTACTTTCTTGGAT 58.751 41.667 27.02 0.00 0.00 3.41
5635 6703 2.191375 CTCCTGCGGATGCCACAT 59.809 61.111 0.00 0.00 41.78 3.21
5686 6754 1.819288 ACTTGACGATCACGAGACCAT 59.181 47.619 10.07 0.00 42.66 3.55
5722 6790 5.240844 GCTGTTAACAGGGTTTGTCAGTATT 59.759 40.000 31.42 0.00 43.94 1.89
5724 6792 7.033530 TGTTAACAGGGTTTGTCAGTATTTG 57.966 36.000 3.59 0.00 39.73 2.32
5884 6952 1.300465 CCAGATGACAGGCGATCCG 60.300 63.158 0.00 0.00 37.47 4.18
6302 7370 8.148999 TCTTACCCTTCTCAGTTCTTTAGAAAC 58.851 37.037 0.00 0.00 35.58 2.78
6304 7372 7.613551 ACCCTTCTCAGTTCTTTAGAAACTA 57.386 36.000 0.00 0.00 35.58 2.24
6452 7521 7.519032 TCCCCAAAACTTATTGTCTTACAAG 57.481 36.000 0.00 0.00 41.94 3.16
6551 7620 1.134580 CCTCTGCACGAATCTCCATGT 60.135 52.381 0.00 0.00 0.00 3.21
6555 7624 2.076100 TGCACGAATCTCCATGTCAAC 58.924 47.619 0.00 0.00 0.00 3.18
6556 7625 2.289631 TGCACGAATCTCCATGTCAACT 60.290 45.455 0.00 0.00 0.00 3.16
6563 7632 1.618343 TCTCCATGTCAACTTGCTCGA 59.382 47.619 0.00 0.00 0.00 4.04
6566 7635 1.511850 CATGTCAACTTGCTCGACCA 58.488 50.000 0.00 0.00 0.00 4.02
6636 7705 1.304134 GGTCTGCCCCACCGATTTT 60.304 57.895 0.00 0.00 0.00 1.82
6694 7812 1.826720 TCATGCCTGGATTTTTGAGCC 59.173 47.619 0.00 0.00 0.00 4.70
6755 7907 7.976135 TTGTTTCCCATGATTATTTTGGTTG 57.024 32.000 0.00 0.00 0.00 3.77
6783 7942 9.927668 ATGTTCATCGAATAAAATCAAAAGGTT 57.072 25.926 0.00 0.00 0.00 3.50
6802 7961 3.181537 GGTTATTCGTTTCGTGAAGTCGG 60.182 47.826 8.53 0.00 0.00 4.79
6895 8117 2.483013 GGCCCAACCTGAAAAGTGAAAC 60.483 50.000 0.00 0.00 34.51 2.78
6896 8118 2.798145 GCCCAACCTGAAAAGTGAAACG 60.798 50.000 0.00 0.00 45.86 3.60
6897 8119 2.223711 CCCAACCTGAAAAGTGAAACGG 60.224 50.000 0.00 0.00 45.86 4.44
6898 8120 2.685897 CCAACCTGAAAAGTGAAACGGA 59.314 45.455 0.00 0.00 45.86 4.69
6899 8121 3.129638 CCAACCTGAAAAGTGAAACGGAA 59.870 43.478 0.00 0.00 45.86 4.30
6900 8122 4.202111 CCAACCTGAAAAGTGAAACGGAAT 60.202 41.667 0.00 0.00 45.86 3.01
6901 8123 5.348164 CAACCTGAAAAGTGAAACGGAATT 58.652 37.500 0.00 0.00 45.86 2.17
6902 8124 6.460399 CCAACCTGAAAAGTGAAACGGAATTA 60.460 38.462 0.00 0.00 45.86 1.40
6903 8125 6.068473 ACCTGAAAAGTGAAACGGAATTAC 57.932 37.500 0.00 0.00 45.86 1.89
6904 8126 5.826208 ACCTGAAAAGTGAAACGGAATTACT 59.174 36.000 0.00 0.00 45.86 2.24
6905 8127 6.142817 CCTGAAAAGTGAAACGGAATTACTG 58.857 40.000 0.00 0.00 45.86 2.74
6906 8128 6.238648 CCTGAAAAGTGAAACGGAATTACTGT 60.239 38.462 0.00 0.00 45.86 3.55
6908 8130 7.632721 TGAAAAGTGAAACGGAATTACTGTAC 58.367 34.615 0.00 0.00 45.86 2.90
6909 8131 7.280428 TGAAAAGTGAAACGGAATTACTGTACA 59.720 33.333 0.00 0.00 45.86 2.90
6910 8132 6.535274 AAGTGAAACGGAATTACTGTACAC 57.465 37.500 0.00 0.00 45.86 2.90
6911 8133 5.603596 AGTGAAACGGAATTACTGTACACA 58.396 37.500 16.45 0.00 45.86 3.72
6912 8134 5.464389 AGTGAAACGGAATTACTGTACACAC 59.536 40.000 16.45 0.00 45.86 3.82
6913 8135 5.234757 GTGAAACGGAATTACTGTACACACA 59.765 40.000 0.00 0.00 40.87 3.72
6914 8136 5.816258 TGAAACGGAATTACTGTACACACAA 59.184 36.000 0.00 0.00 37.07 3.33
6915 8137 5.662211 AACGGAATTACTGTACACACAAC 57.338 39.130 0.00 0.00 37.07 3.32
6916 8138 4.695396 ACGGAATTACTGTACACACAACA 58.305 39.130 0.00 0.00 36.20 3.33
6923 8145 3.323729 CTGTACACACAACAGTTGCTG 57.676 47.619 13.56 12.57 39.61 4.41
6925 8147 1.021202 TACACACAACAGTTGCTGGC 58.979 50.000 13.56 0.00 35.51 4.85
6926 8148 1.066257 CACACAACAGTTGCTGGCC 59.934 57.895 13.56 0.00 35.51 5.36
6927 8149 2.332514 CACAACAGTTGCTGGCCG 59.667 61.111 13.56 0.00 35.51 6.13
6928 8150 2.186160 CACAACAGTTGCTGGCCGA 61.186 57.895 13.56 0.00 35.51 5.54
6930 8152 1.008538 CAACAGTTGCTGGCCGAAC 60.009 57.895 0.00 0.57 35.51 3.95
6931 8153 1.152963 AACAGTTGCTGGCCGAACT 60.153 52.632 8.45 8.45 35.51 3.01
6933 8155 1.302033 CAGTTGCTGGCCGAACTCT 60.302 57.895 10.80 0.00 29.73 3.24
6934 8156 1.302033 AGTTGCTGGCCGAACTCTG 60.302 57.895 8.45 0.00 0.00 3.35
6935 8157 2.032528 TTGCTGGCCGAACTCTGG 59.967 61.111 0.00 0.00 0.00 3.86
6936 8158 2.515979 TTGCTGGCCGAACTCTGGA 61.516 57.895 0.00 0.00 0.00 3.86
6937 8159 1.841302 TTGCTGGCCGAACTCTGGAT 61.841 55.000 0.00 0.00 0.00 3.41
6938 8160 1.817099 GCTGGCCGAACTCTGGATG 60.817 63.158 0.00 0.00 0.00 3.51
6939 8161 1.900351 CTGGCCGAACTCTGGATGA 59.100 57.895 0.00 0.00 0.00 2.92
6940 8162 0.467384 CTGGCCGAACTCTGGATGAT 59.533 55.000 0.00 0.00 0.00 2.45
6941 8163 0.911769 TGGCCGAACTCTGGATGATT 59.088 50.000 0.00 0.00 0.00 2.57
6942 8164 1.303309 GGCCGAACTCTGGATGATTG 58.697 55.000 0.00 0.00 0.00 2.67
6943 8165 1.134401 GGCCGAACTCTGGATGATTGA 60.134 52.381 0.00 0.00 0.00 2.57
6944 8166 2.632377 GCCGAACTCTGGATGATTGAA 58.368 47.619 0.00 0.00 0.00 2.69
6945 8167 2.611292 GCCGAACTCTGGATGATTGAAG 59.389 50.000 0.00 0.00 0.00 3.02
6946 8168 3.679917 GCCGAACTCTGGATGATTGAAGA 60.680 47.826 0.00 0.00 0.00 2.87
6947 8169 4.507710 CCGAACTCTGGATGATTGAAGAA 58.492 43.478 0.00 0.00 0.00 2.52
6948 8170 5.121811 CCGAACTCTGGATGATTGAAGAAT 58.878 41.667 0.00 0.00 0.00 2.40
6949 8171 5.236047 CCGAACTCTGGATGATTGAAGAATC 59.764 44.000 0.00 0.00 38.85 2.52
6950 8172 5.051173 CGAACTCTGGATGATTGAAGAATCG 60.051 44.000 0.00 0.00 40.96 3.34
6951 8173 5.604758 ACTCTGGATGATTGAAGAATCGA 57.395 39.130 0.00 0.00 40.96 3.59
6952 8174 5.982356 ACTCTGGATGATTGAAGAATCGAA 58.018 37.500 0.00 0.00 40.96 3.71
6953 8175 6.590068 ACTCTGGATGATTGAAGAATCGAAT 58.410 36.000 0.00 0.00 40.96 3.34
6954 8176 6.482641 ACTCTGGATGATTGAAGAATCGAATG 59.517 38.462 0.00 0.00 40.96 2.67
6955 8177 5.761726 TCTGGATGATTGAAGAATCGAATGG 59.238 40.000 0.00 0.00 40.96 3.16
6956 8178 5.439721 TGGATGATTGAAGAATCGAATGGT 58.560 37.500 0.00 0.00 40.96 3.55
6957 8179 5.297527 TGGATGATTGAAGAATCGAATGGTG 59.702 40.000 0.00 0.00 40.96 4.17
6958 8180 4.621068 TGATTGAAGAATCGAATGGTGC 57.379 40.909 0.00 0.00 40.96 5.01
6959 8181 4.264253 TGATTGAAGAATCGAATGGTGCT 58.736 39.130 0.00 0.00 40.96 4.40
6960 8182 4.095334 TGATTGAAGAATCGAATGGTGCTG 59.905 41.667 0.00 0.00 40.96 4.41
6961 8183 3.057969 TGAAGAATCGAATGGTGCTGT 57.942 42.857 0.00 0.00 0.00 4.40
6962 8184 3.411446 TGAAGAATCGAATGGTGCTGTT 58.589 40.909 0.00 0.00 0.00 3.16
6963 8185 3.436704 TGAAGAATCGAATGGTGCTGTTC 59.563 43.478 0.00 0.00 0.00 3.18
6964 8186 3.057969 AGAATCGAATGGTGCTGTTCA 57.942 42.857 0.00 0.00 0.00 3.18
6965 8187 2.744202 AGAATCGAATGGTGCTGTTCAC 59.256 45.455 0.00 0.00 44.90 3.18
6973 8195 3.853623 GTGCTGTTCACCTTTGCTC 57.146 52.632 0.00 0.00 39.79 4.26
6974 8196 1.312815 GTGCTGTTCACCTTTGCTCT 58.687 50.000 0.00 0.00 39.79 4.09
6975 8197 2.494059 GTGCTGTTCACCTTTGCTCTA 58.506 47.619 0.00 0.00 39.79 2.43
6976 8198 2.224314 GTGCTGTTCACCTTTGCTCTAC 59.776 50.000 0.00 0.00 39.79 2.59
6977 8199 1.461127 GCTGTTCACCTTTGCTCTACG 59.539 52.381 0.00 0.00 0.00 3.51
6978 8200 1.461127 CTGTTCACCTTTGCTCTACGC 59.539 52.381 0.00 0.00 39.77 4.42
6987 8209 1.300156 TGCTCTACGCATCGATGGC 60.300 57.895 26.00 19.00 45.47 4.40
6988 8210 1.006805 GCTCTACGCATCGATGGCT 60.007 57.895 26.00 10.86 38.92 4.75
6989 8211 0.598680 GCTCTACGCATCGATGGCTT 60.599 55.000 26.00 14.16 38.92 4.35
6990 8212 1.135046 CTCTACGCATCGATGGCTTG 58.865 55.000 26.00 2.81 0.00 4.01
6991 8213 0.744281 TCTACGCATCGATGGCTTGA 59.256 50.000 26.00 12.59 0.00 3.02
6992 8214 1.341209 TCTACGCATCGATGGCTTGAT 59.659 47.619 26.00 7.49 0.00 2.57
6993 8215 1.458445 CTACGCATCGATGGCTTGATG 59.542 52.381 26.00 8.38 43.57 3.07
6994 8216 0.462581 ACGCATCGATGGCTTGATGT 60.463 50.000 26.00 8.93 42.93 3.06
6995 8217 0.041576 CGCATCGATGGCTTGATGTG 60.042 55.000 26.00 2.48 43.74 3.21
6996 8218 0.317603 GCATCGATGGCTTGATGTGC 60.318 55.000 26.00 6.04 42.93 4.57
6997 8219 1.306148 CATCGATGGCTTGATGTGCT 58.694 50.000 17.96 0.00 38.15 4.40
6998 8220 1.002792 CATCGATGGCTTGATGTGCTG 60.003 52.381 17.96 0.00 38.15 4.41
6999 8221 1.063649 CGATGGCTTGATGTGCTGC 59.936 57.895 0.00 0.00 0.00 5.25
7000 8222 1.650314 CGATGGCTTGATGTGCTGCA 61.650 55.000 0.00 0.00 0.00 4.41
7001 8223 0.744874 GATGGCTTGATGTGCTGCAT 59.255 50.000 5.27 0.00 41.24 3.96
7011 8233 2.773993 TGTGCTGCATCATCTGAAGA 57.226 45.000 5.27 0.00 31.16 2.87
7012 8234 3.277142 TGTGCTGCATCATCTGAAGAT 57.723 42.857 5.27 0.00 31.16 2.40
7013 8235 3.203716 TGTGCTGCATCATCTGAAGATC 58.796 45.455 5.27 0.00 31.16 2.75
7014 8236 3.203716 GTGCTGCATCATCTGAAGATCA 58.796 45.455 5.27 0.00 31.16 2.92
7015 8237 3.815962 GTGCTGCATCATCTGAAGATCAT 59.184 43.478 5.27 0.00 31.16 2.45
7016 8238 4.276183 GTGCTGCATCATCTGAAGATCATT 59.724 41.667 5.27 0.00 31.16 2.57
7017 8239 4.515567 TGCTGCATCATCTGAAGATCATTC 59.484 41.667 0.00 0.00 31.16 2.67
7018 8240 4.515567 GCTGCATCATCTGAAGATCATTCA 59.484 41.667 0.00 1.64 31.16 2.57
7019 8241 5.334491 GCTGCATCATCTGAAGATCATTCAG 60.334 44.000 20.21 20.21 45.38 3.02
7026 8248 3.866651 CTGAAGATCATTCAGAACCCGT 58.133 45.455 21.05 0.00 46.57 5.28
7027 8249 3.861840 TGAAGATCATTCAGAACCCGTC 58.138 45.455 0.00 0.00 0.00 4.79
7028 8250 2.586258 AGATCATTCAGAACCCGTCG 57.414 50.000 0.00 0.00 0.00 5.12
7029 8251 1.137086 AGATCATTCAGAACCCGTCGG 59.863 52.381 3.60 3.60 0.00 4.79
7030 8252 0.462047 ATCATTCAGAACCCGTCGGC 60.462 55.000 5.50 0.00 0.00 5.54
7031 8253 1.079127 CATTCAGAACCCGTCGGCT 60.079 57.895 5.50 0.00 0.00 5.52
7032 8254 1.079127 ATTCAGAACCCGTCGGCTG 60.079 57.895 5.50 8.41 0.00 4.85
7033 8255 1.827399 ATTCAGAACCCGTCGGCTGT 61.827 55.000 5.50 0.00 0.00 4.40
7034 8256 2.709125 TTCAGAACCCGTCGGCTGTG 62.709 60.000 5.50 4.08 0.00 3.66
7035 8257 3.231736 AGAACCCGTCGGCTGTGT 61.232 61.111 5.50 0.00 0.00 3.72
7036 8258 1.904865 AGAACCCGTCGGCTGTGTA 60.905 57.895 5.50 0.00 0.00 2.90
7037 8259 1.445582 GAACCCGTCGGCTGTGTAG 60.446 63.158 5.50 0.00 0.00 2.74
7050 8272 2.487934 CTGTGTAGCAGTGCTCAAAGT 58.512 47.619 23.64 0.00 40.44 2.66
7051 8273 2.874701 CTGTGTAGCAGTGCTCAAAGTT 59.125 45.455 23.64 0.00 40.44 2.66
7052 8274 4.058124 CTGTGTAGCAGTGCTCAAAGTTA 58.942 43.478 23.64 0.00 40.44 2.24
7053 8275 4.447290 TGTGTAGCAGTGCTCAAAGTTAA 58.553 39.130 23.64 0.00 40.44 2.01
7054 8276 4.878971 TGTGTAGCAGTGCTCAAAGTTAAA 59.121 37.500 23.64 0.00 40.44 1.52
7055 8277 5.355630 TGTGTAGCAGTGCTCAAAGTTAAAA 59.644 36.000 23.64 0.00 40.44 1.52
7056 8278 5.681543 GTGTAGCAGTGCTCAAAGTTAAAAC 59.318 40.000 23.64 10.62 40.44 2.43
7057 8279 4.981806 AGCAGTGCTCAAAGTTAAAACA 57.018 36.364 13.14 0.00 30.62 2.83
7058 8280 5.520376 AGCAGTGCTCAAAGTTAAAACAT 57.480 34.783 13.14 0.00 30.62 2.71
7059 8281 5.906073 AGCAGTGCTCAAAGTTAAAACATT 58.094 33.333 13.14 0.00 30.62 2.71
7060 8282 7.038154 AGCAGTGCTCAAAGTTAAAACATTA 57.962 32.000 13.14 0.00 30.62 1.90
7061 8283 7.661040 AGCAGTGCTCAAAGTTAAAACATTAT 58.339 30.769 13.14 0.00 30.62 1.28
7062 8284 7.596248 AGCAGTGCTCAAAGTTAAAACATTATG 59.404 33.333 13.14 0.00 30.62 1.90
7063 8285 7.148755 GCAGTGCTCAAAGTTAAAACATTATGG 60.149 37.037 8.18 0.00 0.00 2.74
7064 8286 8.081633 CAGTGCTCAAAGTTAAAACATTATGGA 58.918 33.333 0.00 0.00 0.00 3.41
7065 8287 8.082242 AGTGCTCAAAGTTAAAACATTATGGAC 58.918 33.333 0.00 0.00 0.00 4.02
7066 8288 7.328493 GTGCTCAAAGTTAAAACATTATGGACC 59.672 37.037 0.00 0.00 0.00 4.46
7067 8289 7.014711 TGCTCAAAGTTAAAACATTATGGACCA 59.985 33.333 0.00 0.00 0.00 4.02
7068 8290 7.542130 GCTCAAAGTTAAAACATTATGGACCAG 59.458 37.037 0.00 0.00 0.00 4.00
7069 8291 7.375053 TCAAAGTTAAAACATTATGGACCAGC 58.625 34.615 0.00 0.00 0.00 4.85
7070 8292 6.909550 AAGTTAAAACATTATGGACCAGCA 57.090 33.333 0.00 0.00 0.00 4.41
7189 8415 2.008543 GCATAAAAGCTTGGCCCTTGC 61.009 52.381 0.00 1.21 0.00 4.01
7200 8426 1.179174 GGCCCTTGCGGACTTTTCTT 61.179 55.000 0.00 0.00 36.27 2.52
7242 8468 1.617850 TGCGGAGGAAATTGCACAAAT 59.382 42.857 0.00 0.00 31.31 2.32
7255 8481 4.915158 TGCACAAATCATCAACTGTTGA 57.085 36.364 23.94 23.94 45.01 3.18
7259 8485 5.048782 GCACAAATCATCAACTGTTGAGGTA 60.049 40.000 27.81 17.95 43.98 3.08
7278 8504 5.949735 AGGTAAACCTTGCATAAAACATCG 58.050 37.500 0.00 0.00 46.09 3.84
7282 8508 4.957759 ACCTTGCATAAAACATCGTACC 57.042 40.909 0.00 0.00 0.00 3.34
7285 8511 5.163663 ACCTTGCATAAAACATCGTACCATG 60.164 40.000 0.00 0.00 0.00 3.66
7349 8575 2.392662 TGCAGCTAGCTCTAATCCACT 58.607 47.619 16.15 0.00 45.94 4.00
7374 8600 5.478233 TTAATTCCGTTGACATGATTCGG 57.522 39.130 0.00 8.28 42.12 4.30
7400 8626 2.029649 TGAGTCCCGCTTGTAAGTGTAC 60.030 50.000 4.67 3.05 34.79 2.90
7401 8627 1.068055 AGTCCCGCTTGTAAGTGTACG 60.068 52.381 4.67 0.00 34.79 3.67
7553 8785 6.183360 GCGTTTTCTTGAAAACATGGAACTTT 60.183 34.615 27.56 0.00 41.43 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 8.959548 TGAGTGCTATCATAAATGTTTTCACAT 58.040 29.630 0.00 0.00 46.34 3.21
23 24 8.334263 TGAGTGCTATCATAAATGTTTTCACA 57.666 30.769 0.00 0.00 37.31 3.58
24 25 8.454106 ACTGAGTGCTATCATAAATGTTTTCAC 58.546 33.333 0.00 0.00 0.00 3.18
25 26 8.565896 ACTGAGTGCTATCATAAATGTTTTCA 57.434 30.769 0.00 0.00 0.00 2.69
26 27 9.846248 AAACTGAGTGCTATCATAAATGTTTTC 57.154 29.630 0.00 0.00 0.00 2.29
27 28 9.846248 GAAACTGAGTGCTATCATAAATGTTTT 57.154 29.630 0.00 0.00 0.00 2.43
28 29 8.177663 CGAAACTGAGTGCTATCATAAATGTTT 58.822 33.333 0.00 0.00 0.00 2.83
29 30 7.334421 ACGAAACTGAGTGCTATCATAAATGTT 59.666 33.333 0.00 0.00 0.00 2.71
30 31 6.818644 ACGAAACTGAGTGCTATCATAAATGT 59.181 34.615 0.00 0.00 0.00 2.71
31 32 7.239166 ACGAAACTGAGTGCTATCATAAATG 57.761 36.000 0.00 0.00 0.00 2.32
32 33 6.480320 GGACGAAACTGAGTGCTATCATAAAT 59.520 38.462 0.00 0.00 0.00 1.40
33 34 5.810587 GGACGAAACTGAGTGCTATCATAAA 59.189 40.000 0.00 0.00 0.00 1.40
34 35 5.348986 GGACGAAACTGAGTGCTATCATAA 58.651 41.667 0.00 0.00 0.00 1.90
35 36 4.497507 CGGACGAAACTGAGTGCTATCATA 60.498 45.833 0.00 0.00 0.00 2.15
36 37 3.735208 CGGACGAAACTGAGTGCTATCAT 60.735 47.826 0.00 0.00 0.00 2.45
37 38 2.415491 CGGACGAAACTGAGTGCTATCA 60.415 50.000 0.00 0.00 0.00 2.15
38 39 2.186076 CGGACGAAACTGAGTGCTATC 58.814 52.381 0.00 0.00 0.00 2.08
39 40 1.544691 ACGGACGAAACTGAGTGCTAT 59.455 47.619 0.00 0.00 0.00 2.97
40 41 0.956633 ACGGACGAAACTGAGTGCTA 59.043 50.000 0.00 0.00 0.00 3.49
41 42 0.104304 AACGGACGAAACTGAGTGCT 59.896 50.000 0.00 0.00 0.00 4.40
42 43 0.935196 AAACGGACGAAACTGAGTGC 59.065 50.000 0.00 0.00 0.00 4.40
43 44 1.525619 GGAAACGGACGAAACTGAGTG 59.474 52.381 0.00 0.00 0.00 3.51
44 45 1.861971 GGAAACGGACGAAACTGAGT 58.138 50.000 0.00 0.00 0.00 3.41
58 59 1.135774 GGATGAAAACGGAGCGGAAAC 60.136 52.381 0.00 0.00 0.00 2.78
59 60 1.161843 GGATGAAAACGGAGCGGAAA 58.838 50.000 0.00 0.00 0.00 3.13
60 61 0.675522 GGGATGAAAACGGAGCGGAA 60.676 55.000 0.00 0.00 0.00 4.30
61 62 1.078708 GGGATGAAAACGGAGCGGA 60.079 57.895 0.00 0.00 0.00 5.54
62 63 0.177141 TAGGGATGAAAACGGAGCGG 59.823 55.000 0.00 0.00 0.00 5.52
63 64 1.571919 CTAGGGATGAAAACGGAGCG 58.428 55.000 0.00 0.00 0.00 5.03
64 65 1.300481 GCTAGGGATGAAAACGGAGC 58.700 55.000 0.00 0.00 0.00 4.70
65 66 1.136305 TCGCTAGGGATGAAAACGGAG 59.864 52.381 5.20 0.00 0.00 4.63
66 67 1.134907 GTCGCTAGGGATGAAAACGGA 60.135 52.381 13.18 0.00 0.00 4.69
67 68 1.287425 GTCGCTAGGGATGAAAACGG 58.713 55.000 13.18 0.00 0.00 4.44
68 69 1.659098 GTGTCGCTAGGGATGAAAACG 59.341 52.381 13.18 0.00 0.00 3.60
69 70 2.007608 GGTGTCGCTAGGGATGAAAAC 58.992 52.381 13.18 6.83 0.00 2.43
70 71 1.404986 CGGTGTCGCTAGGGATGAAAA 60.405 52.381 13.18 0.00 0.00 2.29
71 72 0.174845 CGGTGTCGCTAGGGATGAAA 59.825 55.000 13.18 0.00 0.00 2.69
72 73 0.681887 TCGGTGTCGCTAGGGATGAA 60.682 55.000 13.18 0.00 36.13 2.57
73 74 0.681887 TTCGGTGTCGCTAGGGATGA 60.682 55.000 13.18 6.37 36.13 2.92
74 75 0.527817 GTTCGGTGTCGCTAGGGATG 60.528 60.000 13.18 4.17 36.13 3.51
75 76 1.814527 GTTCGGTGTCGCTAGGGAT 59.185 57.895 13.18 0.00 36.13 3.85
76 77 2.693762 CGTTCGGTGTCGCTAGGGA 61.694 63.158 5.20 5.20 36.13 4.20
77 78 2.202570 CGTTCGGTGTCGCTAGGG 60.203 66.667 0.00 0.00 36.13 3.53
78 79 1.800315 CACGTTCGGTGTCGCTAGG 60.800 63.158 0.00 0.00 41.89 3.02
79 80 3.750162 CACGTTCGGTGTCGCTAG 58.250 61.111 0.00 0.00 41.89 3.42
92 93 3.898627 CTTCTCGGCAGCGACACGT 62.899 63.158 0.00 0.00 0.00 4.49
153 154 3.804193 GTTGGCCGTAGCAGCAGC 61.804 66.667 0.00 0.00 42.56 5.25
154 155 2.046892 AGTTGGCCGTAGCAGCAG 60.047 61.111 0.00 0.00 42.56 4.24
155 156 2.358615 CAGTTGGCCGTAGCAGCA 60.359 61.111 0.00 0.00 42.56 4.41
156 157 3.127533 CCAGTTGGCCGTAGCAGC 61.128 66.667 0.00 0.00 42.56 5.25
157 158 1.741770 GTCCAGTTGGCCGTAGCAG 60.742 63.158 0.00 0.00 42.56 4.24
158 159 2.345991 GTCCAGTTGGCCGTAGCA 59.654 61.111 0.00 0.00 42.56 3.49
159 160 2.813908 CGTCCAGTTGGCCGTAGC 60.814 66.667 0.00 0.00 31.05 3.58
160 161 1.597797 TACCGTCCAGTTGGCCGTAG 61.598 60.000 0.00 0.00 34.30 3.51
161 162 0.971959 ATACCGTCCAGTTGGCCGTA 60.972 55.000 0.00 0.00 34.30 4.02
162 163 0.971959 TATACCGTCCAGTTGGCCGT 60.972 55.000 0.00 0.00 34.30 5.68
163 164 0.176219 TTATACCGTCCAGTTGGCCG 59.824 55.000 0.00 0.00 36.15 6.13
164 165 1.065998 TGTTATACCGTCCAGTTGGCC 60.066 52.381 0.00 0.00 34.44 5.36
165 166 2.389962 TGTTATACCGTCCAGTTGGC 57.610 50.000 0.00 0.00 34.44 4.52
166 167 3.869065 ACATGTTATACCGTCCAGTTGG 58.131 45.455 0.00 0.00 0.00 3.77
167 168 5.873179 AAACATGTTATACCGTCCAGTTG 57.127 39.130 12.39 0.00 0.00 3.16
168 169 6.764560 GGATAAACATGTTATACCGTCCAGTT 59.235 38.462 12.39 0.00 0.00 3.16
169 170 6.285990 GGATAAACATGTTATACCGTCCAGT 58.714 40.000 12.39 0.00 0.00 4.00
170 171 5.699458 GGGATAAACATGTTATACCGTCCAG 59.301 44.000 12.39 0.00 0.00 3.86
171 172 5.613329 GGGATAAACATGTTATACCGTCCA 58.387 41.667 12.39 0.00 0.00 4.02
176 177 5.548406 AGAGCGGGATAAACATGTTATACC 58.452 41.667 12.39 13.84 33.02 2.73
177 178 6.482308 ACAAGAGCGGGATAAACATGTTATAC 59.518 38.462 12.39 6.61 0.00 1.47
178 179 6.588204 ACAAGAGCGGGATAAACATGTTATA 58.412 36.000 12.39 7.17 0.00 0.98
179 180 5.437060 ACAAGAGCGGGATAAACATGTTAT 58.563 37.500 12.39 5.93 0.00 1.89
180 181 4.839121 ACAAGAGCGGGATAAACATGTTA 58.161 39.130 12.39 0.87 0.00 2.41
181 182 3.686016 ACAAGAGCGGGATAAACATGTT 58.314 40.909 4.92 4.92 0.00 2.71
182 183 3.350219 ACAAGAGCGGGATAAACATGT 57.650 42.857 0.00 0.00 0.00 3.21
183 184 4.701956 AAACAAGAGCGGGATAAACATG 57.298 40.909 0.00 0.00 0.00 3.21
184 185 5.722021 AAAAACAAGAGCGGGATAAACAT 57.278 34.783 0.00 0.00 0.00 2.71
240 241 9.064706 AGCACGTACTACACATATAGTAGAAAT 57.935 33.333 17.01 2.95 41.07 2.17
241 242 8.442632 AGCACGTACTACACATATAGTAGAAA 57.557 34.615 17.01 6.11 41.07 2.52
242 243 8.442632 AAGCACGTACTACACATATAGTAGAA 57.557 34.615 17.01 0.00 41.07 2.10
243 244 9.716531 ATAAGCACGTACTACACATATAGTAGA 57.283 33.333 17.01 3.49 41.07 2.59
250 251 9.888878 GATCTAAATAAGCACGTACTACACATA 57.111 33.333 0.00 0.00 0.00 2.29
251 252 7.590322 CGATCTAAATAAGCACGTACTACACAT 59.410 37.037 0.00 0.00 0.00 3.21
252 253 6.908820 CGATCTAAATAAGCACGTACTACACA 59.091 38.462 0.00 0.00 0.00 3.72
253 254 6.129509 GCGATCTAAATAAGCACGTACTACAC 60.130 42.308 0.00 0.00 0.00 2.90
254 255 5.911280 GCGATCTAAATAAGCACGTACTACA 59.089 40.000 0.00 0.00 0.00 2.74
255 256 5.911280 TGCGATCTAAATAAGCACGTACTAC 59.089 40.000 0.00 0.00 32.43 2.73
256 257 6.063640 TGCGATCTAAATAAGCACGTACTA 57.936 37.500 0.00 0.00 32.43 1.82
257 258 4.928601 TGCGATCTAAATAAGCACGTACT 58.071 39.130 0.00 0.00 32.43 2.73
258 259 5.630896 TTGCGATCTAAATAAGCACGTAC 57.369 39.130 0.00 0.00 37.57 3.67
259 260 5.980715 TGATTGCGATCTAAATAAGCACGTA 59.019 36.000 15.08 0.00 37.57 3.57
260 261 4.808895 TGATTGCGATCTAAATAAGCACGT 59.191 37.500 15.08 0.00 37.57 4.49
261 262 5.050769 ACTGATTGCGATCTAAATAAGCACG 60.051 40.000 15.08 0.00 37.57 5.34
262 263 6.292389 ACTGATTGCGATCTAAATAAGCAC 57.708 37.500 15.08 0.00 37.57 4.40
263 264 9.875691 ATATACTGATTGCGATCTAAATAAGCA 57.124 29.630 15.08 0.00 35.90 3.91
289 290 9.978044 TGAACATGACATTGACAAAATTAATGA 57.022 25.926 0.00 0.00 36.09 2.57
292 293 9.978044 TCATGAACATGACATTGACAAAATTAA 57.022 25.926 12.61 0.00 42.42 1.40
338 339 9.154847 GCTGAGTAAATAGGCAATTTTTCAATT 57.845 29.630 2.07 0.00 38.71 2.32
339 340 8.313292 TGCTGAGTAAATAGGCAATTTTTCAAT 58.687 29.630 2.07 0.00 38.71 2.57
340 341 7.598493 GTGCTGAGTAAATAGGCAATTTTTCAA 59.402 33.333 2.07 0.00 38.71 2.69
341 342 7.090173 GTGCTGAGTAAATAGGCAATTTTTCA 58.910 34.615 2.07 6.21 38.71 2.69
342 343 6.251376 CGTGCTGAGTAAATAGGCAATTTTTC 59.749 38.462 2.07 2.75 38.71 2.29
343 344 6.072175 TCGTGCTGAGTAAATAGGCAATTTTT 60.072 34.615 2.07 0.00 38.71 1.94
344 345 5.414454 TCGTGCTGAGTAAATAGGCAATTTT 59.586 36.000 2.07 0.00 38.71 1.82
345 346 4.941263 TCGTGCTGAGTAAATAGGCAATTT 59.059 37.500 2.34 2.34 40.87 1.82
346 347 4.513442 TCGTGCTGAGTAAATAGGCAATT 58.487 39.130 0.00 0.00 34.65 2.32
347 348 4.122776 CTCGTGCTGAGTAAATAGGCAAT 58.877 43.478 0.00 0.00 40.03 3.56
348 349 3.521560 CTCGTGCTGAGTAAATAGGCAA 58.478 45.455 0.00 0.00 40.03 4.52
349 350 2.159099 CCTCGTGCTGAGTAAATAGGCA 60.159 50.000 5.93 0.00 43.64 4.75
350 351 2.159085 ACCTCGTGCTGAGTAAATAGGC 60.159 50.000 5.93 0.00 43.64 3.93
351 352 3.119101 ACACCTCGTGCTGAGTAAATAGG 60.119 47.826 5.93 0.00 43.64 2.57
352 353 4.106197 GACACCTCGTGCTGAGTAAATAG 58.894 47.826 5.93 0.00 43.64 1.73
353 354 3.762288 AGACACCTCGTGCTGAGTAAATA 59.238 43.478 5.93 0.00 43.64 1.40
354 355 2.563179 AGACACCTCGTGCTGAGTAAAT 59.437 45.455 5.93 0.00 43.64 1.40
355 356 1.961394 AGACACCTCGTGCTGAGTAAA 59.039 47.619 5.93 0.00 43.64 2.01
356 357 1.617322 AGACACCTCGTGCTGAGTAA 58.383 50.000 5.93 0.00 43.64 2.24
357 358 1.617322 AAGACACCTCGTGCTGAGTA 58.383 50.000 5.93 0.00 43.64 2.59
358 359 0.753262 AAAGACACCTCGTGCTGAGT 59.247 50.000 5.93 0.00 43.64 3.41
359 360 1.143305 CAAAGACACCTCGTGCTGAG 58.857 55.000 0.13 0.13 44.83 3.35
360 361 0.249868 CCAAAGACACCTCGTGCTGA 60.250 55.000 0.00 0.00 36.98 4.26
361 362 1.230635 CCCAAAGACACCTCGTGCTG 61.231 60.000 0.00 0.00 36.98 4.41
362 363 1.071471 CCCAAAGACACCTCGTGCT 59.929 57.895 0.00 0.00 36.98 4.40
363 364 0.034337 TACCCAAAGACACCTCGTGC 59.966 55.000 0.00 0.00 36.98 5.34
364 365 2.536761 TTACCCAAAGACACCTCGTG 57.463 50.000 0.00 0.00 39.75 4.35
365 366 2.436911 AGTTTACCCAAAGACACCTCGT 59.563 45.455 0.00 0.00 0.00 4.18
366 367 2.806244 CAGTTTACCCAAAGACACCTCG 59.194 50.000 0.00 0.00 0.00 4.63
367 368 3.816994 ACAGTTTACCCAAAGACACCTC 58.183 45.455 0.00 0.00 0.00 3.85
368 369 3.945640 ACAGTTTACCCAAAGACACCT 57.054 42.857 0.00 0.00 0.00 4.00
369 370 5.182570 GGAATACAGTTTACCCAAAGACACC 59.817 44.000 0.00 0.00 0.00 4.16
370 371 5.766174 TGGAATACAGTTTACCCAAAGACAC 59.234 40.000 0.00 0.00 0.00 3.67
371 372 5.942961 TGGAATACAGTTTACCCAAAGACA 58.057 37.500 0.00 0.00 0.00 3.41
372 373 6.884836 AGATGGAATACAGTTTACCCAAAGAC 59.115 38.462 0.00 0.00 0.00 3.01
373 374 7.027874 AGATGGAATACAGTTTACCCAAAGA 57.972 36.000 0.00 0.00 0.00 2.52
374 375 7.703058 AAGATGGAATACAGTTTACCCAAAG 57.297 36.000 0.00 0.00 0.00 2.77
375 376 8.485578 AAAAGATGGAATACAGTTTACCCAAA 57.514 30.769 0.00 0.00 0.00 3.28
376 377 7.947890 AGAAAAGATGGAATACAGTTTACCCAA 59.052 33.333 0.00 0.00 0.00 4.12
377 378 7.466804 AGAAAAGATGGAATACAGTTTACCCA 58.533 34.615 0.00 0.00 0.00 4.51
378 379 7.939784 AGAAAAGATGGAATACAGTTTACCC 57.060 36.000 0.00 0.00 0.00 3.69
379 380 7.755373 GCAAGAAAAGATGGAATACAGTTTACC 59.245 37.037 0.00 0.00 0.00 2.85
380 381 8.515414 AGCAAGAAAAGATGGAATACAGTTTAC 58.485 33.333 0.00 0.00 0.00 2.01
381 382 8.514594 CAGCAAGAAAAGATGGAATACAGTTTA 58.485 33.333 0.00 0.00 0.00 2.01
382 383 7.231317 TCAGCAAGAAAAGATGGAATACAGTTT 59.769 33.333 0.00 0.00 0.00 2.66
383 384 6.716628 TCAGCAAGAAAAGATGGAATACAGTT 59.283 34.615 0.00 0.00 0.00 3.16
384 385 6.240894 TCAGCAAGAAAAGATGGAATACAGT 58.759 36.000 0.00 0.00 0.00 3.55
385 386 6.748333 TCAGCAAGAAAAGATGGAATACAG 57.252 37.500 0.00 0.00 0.00 2.74
386 387 6.660521 ACATCAGCAAGAAAAGATGGAATACA 59.339 34.615 0.00 0.00 41.55 2.29
387 388 7.093322 ACATCAGCAAGAAAAGATGGAATAC 57.907 36.000 0.00 0.00 41.55 1.89
388 389 7.613022 AGAACATCAGCAAGAAAAGATGGAATA 59.387 33.333 0.00 0.00 41.55 1.75
389 390 6.436532 AGAACATCAGCAAGAAAAGATGGAAT 59.563 34.615 0.00 0.00 41.55 3.01
390 391 5.771666 AGAACATCAGCAAGAAAAGATGGAA 59.228 36.000 0.00 0.00 41.55 3.53
391 392 5.182570 CAGAACATCAGCAAGAAAAGATGGA 59.817 40.000 0.00 0.00 41.55 3.41
392 393 5.399858 CAGAACATCAGCAAGAAAAGATGG 58.600 41.667 0.00 0.00 41.55 3.51
393 394 4.857588 GCAGAACATCAGCAAGAAAAGATG 59.142 41.667 0.00 0.00 42.61 2.90
394 395 4.379186 CGCAGAACATCAGCAAGAAAAGAT 60.379 41.667 0.00 0.00 0.00 2.40
395 396 3.058708 CGCAGAACATCAGCAAGAAAAGA 60.059 43.478 0.00 0.00 0.00 2.52
396 397 3.231965 CGCAGAACATCAGCAAGAAAAG 58.768 45.455 0.00 0.00 0.00 2.27
397 398 2.030893 CCGCAGAACATCAGCAAGAAAA 60.031 45.455 0.00 0.00 0.00 2.29
398 399 1.536766 CCGCAGAACATCAGCAAGAAA 59.463 47.619 0.00 0.00 0.00 2.52
399 400 1.159285 CCGCAGAACATCAGCAAGAA 58.841 50.000 0.00 0.00 0.00 2.52
400 401 1.300971 GCCGCAGAACATCAGCAAGA 61.301 55.000 0.00 0.00 0.00 3.02
401 402 1.136147 GCCGCAGAACATCAGCAAG 59.864 57.895 0.00 0.00 0.00 4.01
402 403 0.961857 ATGCCGCAGAACATCAGCAA 60.962 50.000 0.00 0.00 33.35 3.91
403 404 1.377594 ATGCCGCAGAACATCAGCA 60.378 52.632 0.00 0.00 34.28 4.41
404 405 1.063649 CATGCCGCAGAACATCAGC 59.936 57.895 0.00 0.00 0.00 4.26
405 406 1.306148 ATCATGCCGCAGAACATCAG 58.694 50.000 0.00 0.00 0.00 2.90
406 407 1.402613 CAATCATGCCGCAGAACATCA 59.597 47.619 0.00 0.00 0.00 3.07
407 408 1.402968 ACAATCATGCCGCAGAACATC 59.597 47.619 0.00 0.00 0.00 3.06
408 409 1.466856 ACAATCATGCCGCAGAACAT 58.533 45.000 0.00 0.00 0.00 2.71
409 410 2.106477 TACAATCATGCCGCAGAACA 57.894 45.000 0.00 0.00 0.00 3.18
410 411 3.698029 ATTACAATCATGCCGCAGAAC 57.302 42.857 0.00 0.00 0.00 3.01
411 412 3.947196 AGAATTACAATCATGCCGCAGAA 59.053 39.130 0.00 0.00 0.00 3.02
412 413 3.313249 CAGAATTACAATCATGCCGCAGA 59.687 43.478 0.00 0.00 0.00 4.26
413 414 3.549423 CCAGAATTACAATCATGCCGCAG 60.549 47.826 0.00 0.00 0.00 5.18
414 415 2.358582 CCAGAATTACAATCATGCCGCA 59.641 45.455 0.00 0.00 0.00 5.69
415 416 2.859806 GCCAGAATTACAATCATGCCGC 60.860 50.000 0.00 0.00 0.00 6.53
416 417 2.620115 AGCCAGAATTACAATCATGCCG 59.380 45.455 0.00 0.00 0.00 5.69
417 418 5.766222 CTTAGCCAGAATTACAATCATGCC 58.234 41.667 0.00 0.00 0.00 4.40
418 419 5.218139 GCTTAGCCAGAATTACAATCATGC 58.782 41.667 0.00 0.00 0.00 4.06
419 420 6.381481 TGCTTAGCCAGAATTACAATCATG 57.619 37.500 0.29 0.00 0.00 3.07
420 421 6.774170 TGATGCTTAGCCAGAATTACAATCAT 59.226 34.615 0.29 0.00 0.00 2.45
421 422 6.121590 TGATGCTTAGCCAGAATTACAATCA 58.878 36.000 0.29 0.00 0.00 2.57
422 423 6.624352 TGATGCTTAGCCAGAATTACAATC 57.376 37.500 0.29 0.00 0.00 2.67
423 424 7.592885 ATTGATGCTTAGCCAGAATTACAAT 57.407 32.000 0.29 0.00 0.00 2.71
424 425 7.408756 AATTGATGCTTAGCCAGAATTACAA 57.591 32.000 0.29 0.00 0.00 2.41
425 426 8.518430 TTAATTGATGCTTAGCCAGAATTACA 57.482 30.769 0.29 0.00 0.00 2.41
429 430 8.302438 GCTTATTAATTGATGCTTAGCCAGAAT 58.698 33.333 0.29 0.00 0.00 2.40
430 431 7.255590 GGCTTATTAATTGATGCTTAGCCAGAA 60.256 37.037 15.93 0.00 43.84 3.02
431 432 6.207417 GGCTTATTAATTGATGCTTAGCCAGA 59.793 38.462 15.93 0.00 43.84 3.86
432 433 6.385033 GGCTTATTAATTGATGCTTAGCCAG 58.615 40.000 15.93 0.00 43.84 4.85
433 434 5.243730 GGGCTTATTAATTGATGCTTAGCCA 59.756 40.000 19.43 0.00 45.67 4.75
434 435 5.619981 CGGGCTTATTAATTGATGCTTAGCC 60.620 44.000 0.29 13.99 43.71 3.93
435 436 5.048713 ACGGGCTTATTAATTGATGCTTAGC 60.049 40.000 0.00 0.00 0.00 3.09
436 437 6.560253 ACGGGCTTATTAATTGATGCTTAG 57.440 37.500 0.00 0.00 0.00 2.18
437 438 6.544197 TCAACGGGCTTATTAATTGATGCTTA 59.456 34.615 0.00 0.00 0.00 3.09
438 439 5.359576 TCAACGGGCTTATTAATTGATGCTT 59.640 36.000 0.00 0.00 0.00 3.91
439 440 4.887071 TCAACGGGCTTATTAATTGATGCT 59.113 37.500 0.00 0.00 0.00 3.79
440 441 5.181690 TCAACGGGCTTATTAATTGATGC 57.818 39.130 0.00 0.00 0.00 3.91
441 442 6.578545 CGAATCAACGGGCTTATTAATTGATG 59.421 38.462 0.00 0.00 36.99 3.07
442 443 6.485313 TCGAATCAACGGGCTTATTAATTGAT 59.515 34.615 0.00 0.00 38.17 2.57
443 444 5.818336 TCGAATCAACGGGCTTATTAATTGA 59.182 36.000 0.00 0.00 0.00 2.57
444 445 6.055231 TCGAATCAACGGGCTTATTAATTG 57.945 37.500 0.00 0.00 0.00 2.32
445 446 6.687081 TTCGAATCAACGGGCTTATTAATT 57.313 33.333 0.00 0.00 0.00 1.40
446 447 6.687081 TTTCGAATCAACGGGCTTATTAAT 57.313 33.333 0.00 0.00 0.00 1.40
447 448 6.497785 TTTTCGAATCAACGGGCTTATTAA 57.502 33.333 0.00 0.00 0.00 1.40
448 449 6.497785 TTTTTCGAATCAACGGGCTTATTA 57.502 33.333 0.00 0.00 0.00 0.98
449 450 5.379732 TTTTTCGAATCAACGGGCTTATT 57.620 34.783 0.00 0.00 0.00 1.40
469 470 1.133915 TGCCGAACCTCACTCCTTTTT 60.134 47.619 0.00 0.00 0.00 1.94
470 471 0.472471 TGCCGAACCTCACTCCTTTT 59.528 50.000 0.00 0.00 0.00 2.27
471 472 0.693049 ATGCCGAACCTCACTCCTTT 59.307 50.000 0.00 0.00 0.00 3.11
472 473 0.250513 GATGCCGAACCTCACTCCTT 59.749 55.000 0.00 0.00 0.00 3.36
473 474 0.904865 TGATGCCGAACCTCACTCCT 60.905 55.000 0.00 0.00 0.00 3.69
474 475 0.460987 CTGATGCCGAACCTCACTCC 60.461 60.000 0.00 0.00 0.00 3.85
475 476 1.086634 GCTGATGCCGAACCTCACTC 61.087 60.000 0.00 0.00 0.00 3.51
476 477 1.078848 GCTGATGCCGAACCTCACT 60.079 57.895 0.00 0.00 0.00 3.41
477 478 0.175760 TAGCTGATGCCGAACCTCAC 59.824 55.000 0.00 0.00 40.80 3.51
478 479 0.901827 TTAGCTGATGCCGAACCTCA 59.098 50.000 0.00 0.00 40.80 3.86
479 480 2.246719 ATTAGCTGATGCCGAACCTC 57.753 50.000 0.00 0.00 40.80 3.85
480 481 5.665459 GATATATTAGCTGATGCCGAACCT 58.335 41.667 0.32 0.00 40.80 3.50
481 482 4.504461 CGATATATTAGCTGATGCCGAACC 59.496 45.833 0.32 0.00 40.80 3.62
488 489 5.595885 CCTGGTCCGATATATTAGCTGATG 58.404 45.833 0.32 0.00 0.00 3.07
490 491 3.447586 GCCTGGTCCGATATATTAGCTGA 59.552 47.826 0.00 0.00 0.00 4.26
514 515 8.181904 ACCTACAAAAACACAAATCAGATCAT 57.818 30.769 0.00 0.00 0.00 2.45
594 599 0.250295 TCCTGGCAGAAAGGTTGTCG 60.250 55.000 17.94 0.00 36.14 4.35
595 600 1.239347 GTCCTGGCAGAAAGGTTGTC 58.761 55.000 17.94 0.00 36.14 3.18
677 683 7.367285 GTCCAGTTCATGTATTTGTTTGCTTA 58.633 34.615 0.00 0.00 0.00 3.09
678 684 6.215845 GTCCAGTTCATGTATTTGTTTGCTT 58.784 36.000 0.00 0.00 0.00 3.91
679 685 5.562696 CGTCCAGTTCATGTATTTGTTTGCT 60.563 40.000 0.00 0.00 0.00 3.91
713 721 6.318648 AGCTTCAAATGTGCTTATATTCCGAA 59.681 34.615 0.00 0.00 32.61 4.30
725 733 2.677836 TCCGTGATAGCTTCAAATGTGC 59.322 45.455 0.00 0.00 35.70 4.57
774 782 3.057245 GTCAGGGTTGATTGCCTCTTTTC 60.057 47.826 0.00 0.00 35.39 2.29
854 869 2.012673 GTGAATCTGATTGCTCGCCTT 58.987 47.619 7.78 0.00 0.00 4.35
871 894 7.789831 AGTGGTATTTATAGAGGGAGATTGTGA 59.210 37.037 0.00 0.00 0.00 3.58
882 906 4.627467 GCATGGCGAGTGGTATTTATAGAG 59.373 45.833 0.00 0.00 0.00 2.43
984 1029 1.638467 CATTTGCGACGGAGCTAGC 59.362 57.895 6.62 6.62 38.13 3.42
985 1030 1.766143 GCCATTTGCGACGGAGCTAG 61.766 60.000 0.00 0.00 38.13 3.42
986 1031 1.813753 GCCATTTGCGACGGAGCTA 60.814 57.895 0.00 0.00 38.13 3.32
987 1032 3.127533 GCCATTTGCGACGGAGCT 61.128 61.111 0.00 0.00 38.13 4.09
1142 2115 7.868415 CAGAAGCTATACATAGTCTAACAACCC 59.132 40.741 0.00 0.00 32.96 4.11
1143 2116 8.414778 ACAGAAGCTATACATAGTCTAACAACC 58.585 37.037 0.00 0.00 32.96 3.77
1275 2248 3.703420 GATCGTAACCTTGCGTGATACT 58.297 45.455 0.00 0.00 37.54 2.12
1285 2258 3.340727 CGGAAGCGATCGTAACCTT 57.659 52.632 17.81 11.09 0.00 3.50
1464 2447 3.528370 CCGATCGGAGCCGGAACT 61.528 66.667 30.62 0.00 43.80 3.01
1500 2483 4.373116 GGCGGCGTGGAGAAGACA 62.373 66.667 9.37 0.00 0.00 3.41
2182 3165 0.836606 TCAGTGGCAGTGGAGTCAAA 59.163 50.000 21.53 0.00 0.00 2.69
2635 3618 0.958091 CCGTCATTGCCAAGACCAAA 59.042 50.000 0.00 0.00 0.00 3.28
2669 3652 3.499737 CGACCTGACGGGCATTGC 61.500 66.667 0.00 0.00 38.74 3.56
2729 3712 3.223435 GGATCGATGGAGTAGGACTGAA 58.777 50.000 0.54 0.00 0.00 3.02
2809 3792 3.383505 CCATGATAGGGTTCACGAGTGTA 59.616 47.826 0.00 0.00 0.00 2.90
3354 4337 1.265236 CAGAAGTCTGAGCAGGACCT 58.735 55.000 1.88 0.00 46.59 3.85
3592 4581 4.646572 TGTGTATGTGGACATGCTAAACA 58.353 39.130 8.96 3.26 39.30 2.83
4201 5247 0.594602 CCATGCAACATAGGGCGATG 59.405 55.000 0.00 0.00 0.00 3.84
4540 5608 1.001764 TAGCCTCGGACTCGGTTGA 60.002 57.895 0.00 0.00 36.95 3.18
4864 5932 2.602676 CCCGTGGTGGTGGAGGAAT 61.603 63.158 0.00 0.00 35.15 3.01
5635 6703 3.307410 CCACCAACAATGCTCCTGTACTA 60.307 47.826 0.00 0.00 0.00 1.82
5686 6754 8.492415 ACCCTGTTAACAGCATAAGAGATATA 57.508 34.615 27.05 0.00 42.47 0.86
5722 6790 0.833287 GTATCTCTGGGAGCCTGCAA 59.167 55.000 0.00 0.00 0.00 4.08
5724 6792 0.678950 GAGTATCTCTGGGAGCCTGC 59.321 60.000 0.00 0.00 0.00 4.85
6302 7370 3.323403 CACCCTCCCTCAATCTTAGCTAG 59.677 52.174 0.00 0.00 0.00 3.42
6304 7372 2.122768 CACCCTCCCTCAATCTTAGCT 58.877 52.381 0.00 0.00 0.00 3.32
6452 7521 1.635663 CGGCTCGTTGACATTGACCC 61.636 60.000 0.00 0.00 0.00 4.46
6540 7609 3.063180 CGAGCAAGTTGACATGGAGATTC 59.937 47.826 7.16 0.00 0.00 2.52
6551 7620 1.295792 GTTGTGGTCGAGCAAGTTGA 58.704 50.000 20.46 0.74 0.00 3.18
6555 7624 1.284982 CGAGGTTGTGGTCGAGCAAG 61.285 60.000 20.46 1.45 38.50 4.01
6556 7625 1.300620 CGAGGTTGTGGTCGAGCAA 60.301 57.895 20.46 7.13 38.50 3.91
6563 7632 2.214920 GGGAGGTCGAGGTTGTGGT 61.215 63.158 0.00 0.00 0.00 4.16
6566 7635 2.995574 CGGGGAGGTCGAGGTTGT 60.996 66.667 0.00 0.00 0.00 3.32
6636 7705 0.471022 TCTAGTGGTGTGGGCACTGA 60.471 55.000 0.00 0.00 44.65 3.41
6783 7942 2.598589 CCCGACTTCACGAAACGAATA 58.401 47.619 0.00 0.00 35.09 1.75
6787 7946 1.219522 AAGCCCGACTTCACGAAACG 61.220 55.000 0.00 0.00 30.77 3.60
6790 7949 0.941542 CAAAAGCCCGACTTCACGAA 59.058 50.000 0.00 0.00 37.75 3.85
6802 7961 3.438360 CGATATCAAAGTGCCAAAAGCC 58.562 45.455 3.12 0.00 42.71 4.35
6895 8117 5.264060 CTGTTGTGTGTACAGTAATTCCG 57.736 43.478 0.00 0.00 38.51 4.30
6903 8125 2.032054 CCAGCAACTGTTGTGTGTACAG 59.968 50.000 20.57 0.00 46.56 2.74
6904 8126 2.013400 CCAGCAACTGTTGTGTGTACA 58.987 47.619 20.57 0.00 34.31 2.90
6905 8127 1.268539 GCCAGCAACTGTTGTGTGTAC 60.269 52.381 20.57 9.82 0.00 2.90
6906 8128 1.021202 GCCAGCAACTGTTGTGTGTA 58.979 50.000 20.57 0.00 0.00 2.90
6908 8130 1.066257 GGCCAGCAACTGTTGTGTG 59.934 57.895 20.57 17.11 0.00 3.82
6909 8131 2.480610 CGGCCAGCAACTGTTGTGT 61.481 57.895 20.57 7.01 0.00 3.72
6910 8132 1.723608 TTCGGCCAGCAACTGTTGTG 61.724 55.000 20.57 16.19 0.00 3.33
6911 8133 1.453015 TTCGGCCAGCAACTGTTGT 60.453 52.632 20.57 6.16 0.00 3.32
6912 8134 1.008538 GTTCGGCCAGCAACTGTTG 60.009 57.895 15.98 15.98 0.00 3.33
6913 8135 1.152963 AGTTCGGCCAGCAACTGTT 60.153 52.632 2.24 0.00 31.42 3.16
6914 8136 1.598130 GAGTTCGGCCAGCAACTGT 60.598 57.895 14.84 0.00 32.83 3.55
6915 8137 1.302033 AGAGTTCGGCCAGCAACTG 60.302 57.895 14.84 0.00 32.83 3.16
6916 8138 1.302033 CAGAGTTCGGCCAGCAACT 60.302 57.895 10.75 10.75 35.48 3.16
6917 8139 2.328099 CCAGAGTTCGGCCAGCAAC 61.328 63.158 2.24 1.89 0.00 4.17
6918 8140 1.841302 ATCCAGAGTTCGGCCAGCAA 61.841 55.000 2.24 0.00 0.00 3.91
6919 8141 2.293318 ATCCAGAGTTCGGCCAGCA 61.293 57.895 2.24 0.00 0.00 4.41
6920 8142 1.817099 CATCCAGAGTTCGGCCAGC 60.817 63.158 2.24 0.00 0.00 4.85
6922 8144 0.911769 AATCATCCAGAGTTCGGCCA 59.088 50.000 2.24 0.00 0.00 5.36
6923 8145 1.134401 TCAATCATCCAGAGTTCGGCC 60.134 52.381 0.00 0.00 0.00 6.13
6925 8147 4.128925 TCTTCAATCATCCAGAGTTCGG 57.871 45.455 0.00 0.00 0.00 4.30
6926 8148 5.051173 CGATTCTTCAATCATCCAGAGTTCG 60.051 44.000 0.00 0.00 38.77 3.95
6927 8149 6.045318 TCGATTCTTCAATCATCCAGAGTTC 58.955 40.000 0.00 0.00 38.77 3.01
6928 8150 5.982356 TCGATTCTTCAATCATCCAGAGTT 58.018 37.500 0.00 0.00 38.77 3.01
6930 8152 6.073167 CCATTCGATTCTTCAATCATCCAGAG 60.073 42.308 0.00 0.00 38.77 3.35
6931 8153 5.761726 CCATTCGATTCTTCAATCATCCAGA 59.238 40.000 0.00 0.00 38.77 3.86
6933 8155 5.297527 CACCATTCGATTCTTCAATCATCCA 59.702 40.000 0.00 0.00 38.77 3.41
6934 8156 5.755813 CACCATTCGATTCTTCAATCATCC 58.244 41.667 0.00 0.00 38.77 3.51
6935 8157 5.008415 AGCACCATTCGATTCTTCAATCATC 59.992 40.000 0.00 0.00 38.77 2.92
6936 8158 4.885907 AGCACCATTCGATTCTTCAATCAT 59.114 37.500 0.00 0.00 38.77 2.45
6937 8159 4.095334 CAGCACCATTCGATTCTTCAATCA 59.905 41.667 0.00 0.00 38.77 2.57
6938 8160 4.095483 ACAGCACCATTCGATTCTTCAATC 59.905 41.667 0.00 0.00 35.86 2.67
6939 8161 4.012374 ACAGCACCATTCGATTCTTCAAT 58.988 39.130 0.00 0.00 0.00 2.57
6940 8162 3.411446 ACAGCACCATTCGATTCTTCAA 58.589 40.909 0.00 0.00 0.00 2.69
6941 8163 3.057969 ACAGCACCATTCGATTCTTCA 57.942 42.857 0.00 0.00 0.00 3.02
6942 8164 3.436704 TGAACAGCACCATTCGATTCTTC 59.563 43.478 0.00 0.00 0.00 2.87
6943 8165 3.189287 GTGAACAGCACCATTCGATTCTT 59.811 43.478 0.00 0.00 41.78 2.52
6944 8166 2.744202 GTGAACAGCACCATTCGATTCT 59.256 45.455 0.00 0.00 41.78 2.40
6945 8167 3.122937 GTGAACAGCACCATTCGATTC 57.877 47.619 0.00 0.00 41.78 2.52
6955 8177 1.312815 AGAGCAAAGGTGAACAGCAC 58.687 50.000 6.76 0.00 46.98 4.40
6956 8178 2.494059 GTAGAGCAAAGGTGAACAGCA 58.506 47.619 6.76 0.00 0.00 4.41
6957 8179 1.461127 CGTAGAGCAAAGGTGAACAGC 59.539 52.381 0.00 0.00 0.00 4.40
6971 8193 1.135046 CAAGCCATCGATGCGTAGAG 58.865 55.000 20.25 6.31 0.00 2.43
6972 8194 0.744281 TCAAGCCATCGATGCGTAGA 59.256 50.000 20.25 11.59 0.00 2.59
6973 8195 1.458445 CATCAAGCCATCGATGCGTAG 59.542 52.381 20.25 7.43 33.19 3.51
6974 8196 1.202521 ACATCAAGCCATCGATGCGTA 60.203 47.619 20.25 3.47 42.28 4.42
6975 8197 0.462581 ACATCAAGCCATCGATGCGT 60.463 50.000 20.25 10.68 42.28 5.24
6976 8198 0.041576 CACATCAAGCCATCGATGCG 60.042 55.000 20.25 13.83 42.28 4.73
6977 8199 0.317603 GCACATCAAGCCATCGATGC 60.318 55.000 20.25 14.80 42.28 3.91
6978 8200 1.002792 CAGCACATCAAGCCATCGATG 60.003 52.381 18.76 18.76 43.78 3.84
6979 8201 1.306148 CAGCACATCAAGCCATCGAT 58.694 50.000 0.00 0.00 0.00 3.59
6980 8202 1.371337 GCAGCACATCAAGCCATCGA 61.371 55.000 0.00 0.00 0.00 3.59
6981 8203 1.063649 GCAGCACATCAAGCCATCG 59.936 57.895 0.00 0.00 0.00 3.84
6982 8204 0.744874 ATGCAGCACATCAAGCCATC 59.255 50.000 0.00 0.00 31.52 3.51
6983 8205 2.896278 ATGCAGCACATCAAGCCAT 58.104 47.368 0.00 0.00 31.52 4.40
6984 8206 4.426971 ATGCAGCACATCAAGCCA 57.573 50.000 0.00 0.00 31.52 4.75
6991 8213 3.277142 TCTTCAGATGATGCAGCACAT 57.723 42.857 6.89 5.06 43.54 3.21
6992 8214 2.773993 TCTTCAGATGATGCAGCACA 57.226 45.000 6.89 0.00 0.00 4.57
6993 8215 3.203716 TGATCTTCAGATGATGCAGCAC 58.796 45.455 6.89 1.03 34.37 4.40
6994 8216 3.553828 TGATCTTCAGATGATGCAGCA 57.446 42.857 7.31 7.31 34.37 4.41
6995 8217 4.515567 TGAATGATCTTCAGATGATGCAGC 59.484 41.667 3.53 0.00 30.24 5.25
6996 8218 5.992217 TCTGAATGATCTTCAGATGATGCAG 59.008 40.000 22.84 15.02 46.70 4.41
6997 8219 5.925509 TCTGAATGATCTTCAGATGATGCA 58.074 37.500 22.84 0.00 46.95 3.96
7005 8227 3.866651 ACGGGTTCTGAATGATCTTCAG 58.133 45.455 20.21 20.21 45.38 3.02
7006 8228 3.676049 CGACGGGTTCTGAATGATCTTCA 60.676 47.826 0.00 1.11 0.00 3.02
7007 8229 2.860735 CGACGGGTTCTGAATGATCTTC 59.139 50.000 0.00 0.00 0.00 2.87
7008 8230 2.418746 CCGACGGGTTCTGAATGATCTT 60.419 50.000 5.81 0.00 0.00 2.40
7009 8231 1.137086 CCGACGGGTTCTGAATGATCT 59.863 52.381 5.81 0.00 0.00 2.75
7010 8232 1.571919 CCGACGGGTTCTGAATGATC 58.428 55.000 5.81 0.00 0.00 2.92
7011 8233 0.462047 GCCGACGGGTTCTGAATGAT 60.462 55.000 17.22 0.00 34.97 2.45
7012 8234 1.079405 GCCGACGGGTTCTGAATGA 60.079 57.895 17.22 0.00 34.97 2.57
7013 8235 1.079127 AGCCGACGGGTTCTGAATG 60.079 57.895 13.98 0.00 34.97 2.67
7014 8236 1.079127 CAGCCGACGGGTTCTGAAT 60.079 57.895 17.55 0.00 34.97 2.57
7015 8237 2.342279 CAGCCGACGGGTTCTGAA 59.658 61.111 17.55 0.00 34.97 3.02
7016 8238 2.915659 ACAGCCGACGGGTTCTGA 60.916 61.111 22.02 0.00 34.97 3.27
7017 8239 2.149803 TACACAGCCGACGGGTTCTG 62.150 60.000 17.55 16.48 34.97 3.02
7018 8240 1.874345 CTACACAGCCGACGGGTTCT 61.874 60.000 17.55 0.45 34.97 3.01
7019 8241 1.445582 CTACACAGCCGACGGGTTC 60.446 63.158 17.55 0.00 34.97 3.62
7020 8242 2.654877 CTACACAGCCGACGGGTT 59.345 61.111 17.55 4.76 34.97 4.11
7021 8243 4.065281 GCTACACAGCCGACGGGT 62.065 66.667 13.98 13.98 42.37 5.28
7031 8253 2.620251 ACTTTGAGCACTGCTACACA 57.380 45.000 2.71 0.00 39.88 3.72
7032 8254 5.418310 TTTAACTTTGAGCACTGCTACAC 57.582 39.130 2.71 0.00 39.88 2.90
7033 8255 5.355630 TGTTTTAACTTTGAGCACTGCTACA 59.644 36.000 2.71 1.42 39.88 2.74
7034 8256 5.816919 TGTTTTAACTTTGAGCACTGCTAC 58.183 37.500 2.71 0.00 39.88 3.58
7035 8257 6.633500 ATGTTTTAACTTTGAGCACTGCTA 57.367 33.333 2.71 0.00 39.88 3.49
7036 8258 4.981806 TGTTTTAACTTTGAGCACTGCT 57.018 36.364 2.22 2.22 43.88 4.24
7037 8259 7.148755 CCATAATGTTTTAACTTTGAGCACTGC 60.149 37.037 0.00 0.00 0.00 4.40
7038 8260 8.081633 TCCATAATGTTTTAACTTTGAGCACTG 58.918 33.333 4.54 0.00 0.00 3.66
7039 8261 8.082242 GTCCATAATGTTTTAACTTTGAGCACT 58.918 33.333 4.54 0.00 0.00 4.40
7040 8262 7.328493 GGTCCATAATGTTTTAACTTTGAGCAC 59.672 37.037 4.54 0.00 0.00 4.40
7041 8263 7.014711 TGGTCCATAATGTTTTAACTTTGAGCA 59.985 33.333 0.00 6.15 29.80 4.26
7042 8264 7.375053 TGGTCCATAATGTTTTAACTTTGAGC 58.625 34.615 0.00 4.26 0.00 4.26
7043 8265 7.542130 GCTGGTCCATAATGTTTTAACTTTGAG 59.458 37.037 0.00 0.00 0.00 3.02
7044 8266 7.014711 TGCTGGTCCATAATGTTTTAACTTTGA 59.985 33.333 0.00 0.00 0.00 2.69
7045 8267 7.151308 TGCTGGTCCATAATGTTTTAACTTTG 58.849 34.615 0.00 0.00 0.00 2.77
7046 8268 7.296628 TGCTGGTCCATAATGTTTTAACTTT 57.703 32.000 0.00 0.00 0.00 2.66
7047 8269 6.909550 TGCTGGTCCATAATGTTTTAACTT 57.090 33.333 0.00 0.00 0.00 2.66
7048 8270 6.909550 TTGCTGGTCCATAATGTTTTAACT 57.090 33.333 0.00 0.00 0.00 2.24
7049 8271 7.117667 CCTTTTGCTGGTCCATAATGTTTTAAC 59.882 37.037 0.00 0.00 0.00 2.01
7050 8272 7.015682 TCCTTTTGCTGGTCCATAATGTTTTAA 59.984 33.333 0.00 0.00 0.00 1.52
7051 8273 6.495181 TCCTTTTGCTGGTCCATAATGTTTTA 59.505 34.615 0.00 0.00 0.00 1.52
7052 8274 5.306678 TCCTTTTGCTGGTCCATAATGTTTT 59.693 36.000 0.00 0.00 0.00 2.43
7053 8275 4.837860 TCCTTTTGCTGGTCCATAATGTTT 59.162 37.500 0.00 0.00 0.00 2.83
7054 8276 4.415596 TCCTTTTGCTGGTCCATAATGTT 58.584 39.130 0.00 0.00 0.00 2.71
7055 8277 4.046286 TCCTTTTGCTGGTCCATAATGT 57.954 40.909 0.00 0.00 0.00 2.71
7056 8278 6.906157 ATATCCTTTTGCTGGTCCATAATG 57.094 37.500 0.00 0.00 0.00 1.90
7060 8282 9.247861 GAATATAATATCCTTTTGCTGGTCCAT 57.752 33.333 0.00 0.00 0.00 3.41
7061 8283 7.390440 CGAATATAATATCCTTTTGCTGGTCCA 59.610 37.037 0.00 0.00 0.00 4.02
7062 8284 7.390718 ACGAATATAATATCCTTTTGCTGGTCC 59.609 37.037 0.00 0.00 0.00 4.46
7063 8285 8.324163 ACGAATATAATATCCTTTTGCTGGTC 57.676 34.615 0.00 0.00 0.00 4.02
7064 8286 9.959721 ATACGAATATAATATCCTTTTGCTGGT 57.040 29.630 0.00 0.00 0.00 4.00
7200 8426 7.416213 CCGCATTAACATATCTTCTTTTTCCCA 60.416 37.037 0.00 0.00 0.00 4.37
7242 8468 5.304686 AGGTTTACCTCAACAGTTGATGA 57.695 39.130 21.53 6.68 44.77 2.92
7259 8485 5.241949 TGGTACGATGTTTTATGCAAGGTTT 59.758 36.000 0.00 0.00 0.00 3.27
7326 8552 2.501316 TGGATTAGAGCTAGCTGCAACA 59.499 45.455 24.99 10.46 45.94 3.33
7349 8575 6.310960 CGAATCATGTCAACGGAATTAAACA 58.689 36.000 0.00 0.00 0.00 2.83
7448 8680 2.270352 TGACCACTGATTTGGGTGAC 57.730 50.000 0.00 0.00 41.49 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.