Multiple sequence alignment - TraesCS1A01G209500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G209500 chr1A 100.000 5111 0 0 1 5111 372232049 372226939 0.000000e+00 9439
1 TraesCS1A01G209500 chr1B 95.394 1954 66 8 2378 4313 401608336 401606389 0.000000e+00 3088
2 TraesCS1A01G209500 chr1B 94.669 619 20 1 1233 1851 401614463 401613858 0.000000e+00 948
3 TraesCS1A01G209500 chr1B 93.028 459 13 8 1932 2382 401613861 401613414 0.000000e+00 652
4 TraesCS1A01G209500 chr1B 93.069 101 7 0 1850 1950 164832161 164832061 1.150000e-31 148
5 TraesCS1A01G209500 chr1B 85.821 134 10 1 4304 4428 401606234 401606101 3.210000e-27 134
6 TraesCS1A01G209500 chr1D 93.791 1369 51 12 2971 4312 298558295 298556934 0.000000e+00 2026
7 TraesCS1A01G209500 chr1D 95.914 930 29 5 1932 2857 298559613 298558689 0.000000e+00 1498
8 TraesCS1A01G209500 chr1D 97.415 619 16 0 1233 1851 298560228 298559610 0.000000e+00 1055
9 TraesCS1A01G209500 chr1D 94.583 240 13 0 4872 5111 298550686 298550447 6.250000e-99 372
10 TraesCS1A01G209500 chr1D 93.750 144 7 1 4313 4454 298556763 298556620 1.110000e-51 215
11 TraesCS1A01G209500 chr1D 92.647 136 8 2 4730 4864 298551790 298551656 1.450000e-45 195
12 TraesCS1A01G209500 chr1D 93.333 120 8 0 2856 2975 298558573 298558454 1.460000e-40 178
13 TraesCS1A01G209500 chr1D 93.220 118 8 0 4617 4734 298552044 298551927 1.890000e-39 174
14 TraesCS1A01G209500 chr4A 96.045 1239 34 6 1 1232 587313033 587314263 0.000000e+00 2002
15 TraesCS1A01G209500 chr4A 96.387 1190 35 3 4 1187 636328097 636326910 0.000000e+00 1953
16 TraesCS1A01G209500 chr4A 95.401 1196 52 1 37 1232 545616320 545617512 0.000000e+00 1901
17 TraesCS1A01G209500 chr4A 94.103 1204 62 4 37 1234 608159238 608160438 0.000000e+00 1821
18 TraesCS1A01G209500 chr2A 95.390 1193 47 3 47 1232 44029621 44030812 0.000000e+00 1892
19 TraesCS1A01G209500 chr2A 94.606 1205 57 3 38 1236 622983901 622982699 0.000000e+00 1858
20 TraesCS1A01G209500 chr4B 93.735 1245 65 3 1 1233 73278730 73279973 0.000000e+00 1855
21 TraesCS1A01G209500 chr3B 93.333 1245 70 4 5 1237 67928258 67927015 0.000000e+00 1827
22 TraesCS1A01G209500 chr7D 92.892 1238 76 10 5 1232 9131507 9132742 0.000000e+00 1788
23 TraesCS1A01G209500 chr3A 98.925 93 0 1 1849 1940 449512809 449512717 1.140000e-36 165
24 TraesCS1A01G209500 chr2B 93.269 104 5 2 1841 1942 54765896 54765999 8.860000e-33 152
25 TraesCS1A01G209500 chr2B 94.737 95 5 0 1845 1939 785216427 785216333 1.150000e-31 148
26 TraesCS1A01G209500 chr6B 92.453 106 6 2 1847 1950 220324953 220324848 3.190000e-32 150
27 TraesCS1A01G209500 chr2D 93.939 99 6 0 1840 1938 121720740 121720642 3.190000e-32 150
28 TraesCS1A01G209500 chrUn 93.137 102 4 3 1834 1935 279936202 279936300 4.120000e-31 147
29 TraesCS1A01G209500 chrUn 93.137 102 4 3 1834 1935 395541589 395541687 4.120000e-31 147
30 TraesCS1A01G209500 chr7B 89.831 118 6 5 1849 1964 652980415 652980528 4.120000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G209500 chr1A 372226939 372232049 5110 True 9439.0 9439 100.000000 1 5111 1 chr1A.!!$R1 5110
1 TraesCS1A01G209500 chr1B 401606101 401608336 2235 True 1611.0 3088 90.607500 2378 4428 2 chr1B.!!$R2 2050
2 TraesCS1A01G209500 chr1B 401613414 401614463 1049 True 800.0 948 93.848500 1233 2382 2 chr1B.!!$R3 1149
3 TraesCS1A01G209500 chr1D 298556620 298560228 3608 True 994.4 2026 94.840600 1233 4454 5 chr1D.!!$R2 3221
4 TraesCS1A01G209500 chr1D 298550447 298552044 1597 True 247.0 372 93.483333 4617 5111 3 chr1D.!!$R1 494
5 TraesCS1A01G209500 chr4A 587313033 587314263 1230 False 2002.0 2002 96.045000 1 1232 1 chr4A.!!$F2 1231
6 TraesCS1A01G209500 chr4A 636326910 636328097 1187 True 1953.0 1953 96.387000 4 1187 1 chr4A.!!$R1 1183
7 TraesCS1A01G209500 chr4A 545616320 545617512 1192 False 1901.0 1901 95.401000 37 1232 1 chr4A.!!$F1 1195
8 TraesCS1A01G209500 chr4A 608159238 608160438 1200 False 1821.0 1821 94.103000 37 1234 1 chr4A.!!$F3 1197
9 TraesCS1A01G209500 chr2A 44029621 44030812 1191 False 1892.0 1892 95.390000 47 1232 1 chr2A.!!$F1 1185
10 TraesCS1A01G209500 chr2A 622982699 622983901 1202 True 1858.0 1858 94.606000 38 1236 1 chr2A.!!$R1 1198
11 TraesCS1A01G209500 chr4B 73278730 73279973 1243 False 1855.0 1855 93.735000 1 1233 1 chr4B.!!$F1 1232
12 TraesCS1A01G209500 chr3B 67927015 67928258 1243 True 1827.0 1827 93.333000 5 1237 1 chr3B.!!$R1 1232
13 TraesCS1A01G209500 chr7D 9131507 9132742 1235 False 1788.0 1788 92.892000 5 1232 1 chr7D.!!$F1 1227

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
962 993 1.174712 GGCTGCAGCTTGAGGACAAA 61.175 55.0 35.82 0.00 41.70 2.83 F
2202 2236 0.030638 AAACATGCCTGCGAACACAC 59.969 50.0 0.00 0.00 0.00 3.82 F
2539 2578 0.459759 GCGAAGTGGTGCCTAGTACC 60.460 60.0 6.49 6.49 38.78 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2930 3086 1.955451 TAAAGGAAGCTTACCGGGGA 58.045 50.0 6.32 0.0 0.00 4.81 R
3929 4259 0.181824 CCGGGGTTTTCACGGGATAT 59.818 55.0 0.00 0.0 45.12 1.63 R
4288 4643 0.178992 CTCAGGGTTGTCCAGGCAAA 60.179 55.0 0.00 0.0 38.24 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
752 781 5.376625 TGCACTTCTTTTGTCTAGATGGTT 58.623 37.500 0.00 0.00 0.00 3.67
859 890 1.815003 CCAGTCCATTTCAGGTTGAGC 59.185 52.381 0.00 0.00 0.00 4.26
929 960 4.794241 GTTGCGTCGCGTCATGGC 62.794 66.667 13.38 4.32 0.00 4.40
962 993 1.174712 GGCTGCAGCTTGAGGACAAA 61.175 55.000 35.82 0.00 41.70 2.83
1280 1312 9.243637 GTTTAGCAGTTGACATGTTCAATTTTA 57.756 29.630 0.00 0.00 46.14 1.52
1307 1339 2.028112 TGACTGTCCTTTTCCTCCATCG 60.028 50.000 5.17 0.00 0.00 3.84
1538 1570 1.620822 CTTTGCCTACAGGTTTGGCT 58.379 50.000 14.22 0.00 46.23 4.75
1675 1707 4.142004 GCCAGGCATTTTCATTCTCATTCT 60.142 41.667 6.55 0.00 0.00 2.40
1756 1788 3.303135 AGGTCTGCGCTGAACCGA 61.303 61.111 26.34 0.00 0.00 4.69
1760 1792 1.741401 TCTGCGCTGAACCGAATGG 60.741 57.895 15.15 0.00 42.84 3.16
1771 1803 3.323691 TGAACCGAATGGAAACTGAGAGA 59.676 43.478 0.00 0.00 39.21 3.10
1851 1883 6.209788 AGGCCTGTATTATGCTTCTCTAGTAC 59.790 42.308 3.11 0.00 0.00 2.73
1853 1885 7.309920 GCCTGTATTATGCTTCTCTAGTACTC 58.690 42.308 0.00 0.00 0.00 2.59
1854 1886 7.576098 GCCTGTATTATGCTTCTCTAGTACTCC 60.576 44.444 0.00 0.00 0.00 3.85
1857 1889 7.666388 TGTATTATGCTTCTCTAGTACTCCCTC 59.334 40.741 0.00 0.00 0.00 4.30
1858 1890 3.300239 TGCTTCTCTAGTACTCCCTCC 57.700 52.381 0.00 0.00 0.00 4.30
1859 1891 2.223745 GCTTCTCTAGTACTCCCTCCG 58.776 57.143 0.00 0.00 0.00 4.63
1860 1892 2.421811 GCTTCTCTAGTACTCCCTCCGT 60.422 54.545 0.00 0.00 0.00 4.69
1862 1894 3.557228 TCTCTAGTACTCCCTCCGTTC 57.443 52.381 0.00 0.00 0.00 3.95
1863 1895 2.172293 TCTCTAGTACTCCCTCCGTTCC 59.828 54.545 0.00 0.00 0.00 3.62
1864 1896 1.918262 TCTAGTACTCCCTCCGTTCCA 59.082 52.381 0.00 0.00 0.00 3.53
1865 1897 2.309755 TCTAGTACTCCCTCCGTTCCAA 59.690 50.000 0.00 0.00 0.00 3.53
1866 1898 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
1867 1899 2.332117 AGTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
1868 1900 2.910977 AGTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
1869 1901 4.098894 AGTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
1870 1902 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
1871 1903 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
1872 1904 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
1873 1905 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
1874 1906 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
1875 1907 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
1876 1908 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
1877 1909 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
1878 1910 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
1879 1911 5.419542 TCCGTTCCAAAATAGATGACTCAG 58.580 41.667 0.00 0.00 0.00 3.35
1880 1912 4.034510 CCGTTCCAAAATAGATGACTCAGC 59.965 45.833 0.00 0.00 0.00 4.26
1881 1913 4.034510 CGTTCCAAAATAGATGACTCAGCC 59.965 45.833 0.00 0.00 0.00 4.85
1882 1914 5.189180 GTTCCAAAATAGATGACTCAGCCT 58.811 41.667 0.00 0.00 0.00 4.58
1883 1915 5.441718 TCCAAAATAGATGACTCAGCCTT 57.558 39.130 0.00 0.00 0.00 4.35
1884 1916 5.188434 TCCAAAATAGATGACTCAGCCTTG 58.812 41.667 0.00 0.00 0.00 3.61
1885 1917 4.946157 CCAAAATAGATGACTCAGCCTTGT 59.054 41.667 0.00 0.00 0.00 3.16
1886 1918 6.070251 TCCAAAATAGATGACTCAGCCTTGTA 60.070 38.462 0.00 0.00 0.00 2.41
1887 1919 6.037610 CCAAAATAGATGACTCAGCCTTGTAC 59.962 42.308 0.00 0.00 0.00 2.90
1888 1920 6.552445 AAATAGATGACTCAGCCTTGTACT 57.448 37.500 0.00 0.00 0.00 2.73
1889 1921 7.661536 AAATAGATGACTCAGCCTTGTACTA 57.338 36.000 0.00 0.00 0.00 1.82
1890 1922 7.661536 AATAGATGACTCAGCCTTGTACTAA 57.338 36.000 0.00 0.00 0.00 2.24
1891 1923 5.590530 AGATGACTCAGCCTTGTACTAAG 57.409 43.478 0.00 0.00 0.00 2.18
1892 1924 5.020132 AGATGACTCAGCCTTGTACTAAGT 58.980 41.667 0.00 0.00 0.00 2.24
1893 1925 5.482175 AGATGACTCAGCCTTGTACTAAGTT 59.518 40.000 0.00 0.00 0.00 2.66
1894 1926 5.546621 TGACTCAGCCTTGTACTAAGTTT 57.453 39.130 0.00 0.00 0.00 2.66
1895 1927 6.659745 TGACTCAGCCTTGTACTAAGTTTA 57.340 37.500 0.00 0.00 0.00 2.01
1896 1928 6.688578 TGACTCAGCCTTGTACTAAGTTTAG 58.311 40.000 0.00 0.00 36.82 1.85
1897 1929 6.267014 TGACTCAGCCTTGTACTAAGTTTAGT 59.733 38.462 9.31 9.31 45.39 2.24
1898 1930 7.449395 TGACTCAGCCTTGTACTAAGTTTAGTA 59.551 37.037 7.49 7.49 43.36 1.82
1921 1953 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
1922 1954 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
1923 1955 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
1924 1956 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
1925 1957 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
1926 1958 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
1927 1959 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
1928 1960 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
1929 1961 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
1930 1962 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
1931 1963 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
1932 1964 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
1933 1965 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
1934 1966 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
1935 1967 4.778958 TCTATTTTGGAACGGAGGGAGTAA 59.221 41.667 0.00 0.00 0.00 2.24
1936 1968 4.586306 ATTTTGGAACGGAGGGAGTAAT 57.414 40.909 0.00 0.00 0.00 1.89
1937 1969 5.703730 ATTTTGGAACGGAGGGAGTAATA 57.296 39.130 0.00 0.00 0.00 0.98
1938 1970 5.703730 TTTTGGAACGGAGGGAGTAATAT 57.296 39.130 0.00 0.00 0.00 1.28
1939 1971 4.950205 TTGGAACGGAGGGAGTAATATC 57.050 45.455 0.00 0.00 0.00 1.63
1940 1972 4.194678 TGGAACGGAGGGAGTAATATCT 57.805 45.455 0.00 0.00 0.00 1.98
1941 1973 5.329191 TGGAACGGAGGGAGTAATATCTA 57.671 43.478 0.00 0.00 0.00 1.98
1942 1974 5.708544 TGGAACGGAGGGAGTAATATCTAA 58.291 41.667 0.00 0.00 0.00 2.10
1943 1975 5.537674 TGGAACGGAGGGAGTAATATCTAAC 59.462 44.000 0.00 0.00 0.00 2.34
1944 1976 5.774184 GGAACGGAGGGAGTAATATCTAACT 59.226 44.000 0.00 0.00 0.00 2.24
1945 1977 6.267242 GGAACGGAGGGAGTAATATCTAACTT 59.733 42.308 0.00 0.00 0.00 2.66
1946 1978 7.201983 GGAACGGAGGGAGTAATATCTAACTTT 60.202 40.741 0.00 0.00 0.00 2.66
1947 1979 7.672122 ACGGAGGGAGTAATATCTAACTTTT 57.328 36.000 0.00 0.00 0.00 2.27
1948 1980 8.087303 ACGGAGGGAGTAATATCTAACTTTTT 57.913 34.615 0.00 0.00 0.00 1.94
1949 1981 9.205513 ACGGAGGGAGTAATATCTAACTTTTTA 57.794 33.333 0.00 0.00 0.00 1.52
2048 2082 3.953612 TCATGCCAAGATCATGTAAACCC 59.046 43.478 0.00 0.00 41.40 4.11
2179 2213 6.815089 TGTTAATTCATTGAAGTGGCAGTTT 58.185 32.000 9.30 0.00 0.00 2.66
2202 2236 0.030638 AAACATGCCTGCGAACACAC 59.969 50.000 0.00 0.00 0.00 3.82
2455 2494 1.153269 TGCTGTTCGCACCTTGACA 60.153 52.632 0.00 0.00 45.47 3.58
2539 2578 0.459759 GCGAAGTGGTGCCTAGTACC 60.460 60.000 6.49 6.49 38.78 3.34
2541 2580 1.135083 CGAAGTGGTGCCTAGTACCTG 60.135 57.143 12.92 0.00 39.07 4.00
2734 2773 3.759086 GACACAGTCCACTCTCAGATACA 59.241 47.826 0.00 0.00 0.00 2.29
2748 2787 4.412843 TCAGATACACGCCCATATCCTAA 58.587 43.478 0.00 0.00 0.00 2.69
2751 2790 4.838986 AGATACACGCCCATATCCTAAAGT 59.161 41.667 0.00 0.00 0.00 2.66
2760 2799 5.763698 GCCCATATCCTAAAGTTGTTCTACC 59.236 44.000 0.00 0.00 0.00 3.18
2766 2805 5.061179 TCCTAAAGTTGTTCTACCAGTTGC 58.939 41.667 0.00 0.00 0.00 4.17
2772 2811 3.838244 TGTTCTACCAGTTGCTCACTT 57.162 42.857 0.00 0.00 30.92 3.16
2869 3025 9.461312 AACCTTGTTTAATATCTTGCAGACATA 57.539 29.630 0.00 0.00 0.00 2.29
2895 3051 6.054295 CACTAAATCCTCCTGAAGATGAAGG 58.946 44.000 0.00 0.00 34.65 3.46
2930 3086 5.297278 GTCCGCGTCATATATCCTCTAGAAT 59.703 44.000 4.92 0.00 0.00 2.40
2987 3306 5.712446 TGTGATCTAGTCTGCTTTAGTCTGT 59.288 40.000 0.00 0.00 0.00 3.41
3037 3358 1.416243 TTTGTCCGGTACTGGTGACT 58.584 50.000 20.40 0.00 0.00 3.41
3147 3468 5.508200 TGCTTCCGTTTTGTCTTAAATGT 57.492 34.783 0.00 0.00 0.00 2.71
3194 3515 2.858745 TGCTTGACCTAAGTTGTTCCC 58.141 47.619 0.00 0.00 38.70 3.97
3197 3518 2.536761 TGACCTAAGTTGTTCCCGTG 57.463 50.000 0.00 0.00 0.00 4.94
3198 3519 1.071071 TGACCTAAGTTGTTCCCGTGG 59.929 52.381 0.00 0.00 0.00 4.94
3211 3532 0.607620 CCCGTGGCAATTTGATGGTT 59.392 50.000 0.00 0.00 0.00 3.67
3451 3772 7.358683 GCTTGTTGCAGATAGTTTGTGATTTTC 60.359 37.037 0.00 0.00 42.31 2.29
3701 4022 3.261137 ACAGCAGTAACTCCCTTCCTAAC 59.739 47.826 0.00 0.00 0.00 2.34
3709 4030 2.979678 ACTCCCTTCCTAACTTTGCTGA 59.020 45.455 0.00 0.00 0.00 4.26
3821 4151 8.184192 CCAAGAGATTTGACGCTTTACAATATT 58.816 33.333 0.00 0.00 0.00 1.28
3915 4245 4.796038 AGAGAGGCATTTGAAAACATGG 57.204 40.909 0.00 0.00 0.00 3.66
3989 4319 8.281212 ACAATATGAAGGTATGAAGTTGTTCC 57.719 34.615 0.00 0.00 0.00 3.62
4043 4373 5.473504 CCTGCAACACTAGATTTAACTTGGT 59.526 40.000 0.00 0.00 0.00 3.67
4124 4454 5.674525 TCTGATGTAATGGTGTTCCTGATC 58.325 41.667 0.00 0.00 34.23 2.92
4125 4455 5.426509 TCTGATGTAATGGTGTTCCTGATCT 59.573 40.000 0.00 0.00 34.23 2.75
4126 4456 6.065976 TGATGTAATGGTGTTCCTGATCTT 57.934 37.500 0.00 0.00 34.23 2.40
4224 4554 5.011635 TCAGCTTGGTGACATAAGAGTGTAA 59.988 40.000 0.00 0.00 42.32 2.41
4288 4643 5.187772 TCAGTTGTAATGGAGCTACTGTCAT 59.812 40.000 0.00 0.00 38.75 3.06
4292 4647 4.635765 TGTAATGGAGCTACTGTCATTTGC 59.364 41.667 0.00 0.00 32.81 3.68
4402 4954 3.786635 CCATCCCTTTTCTACGAGTGAG 58.213 50.000 0.00 0.00 0.00 3.51
4423 4975 1.410517 TGAAAATTCCACCGCAAGCAA 59.589 42.857 0.00 0.00 0.00 3.91
4445 4997 2.272918 GACCCAAGAGAGCGTCTCCG 62.273 65.000 10.24 4.19 44.42 4.63
4447 4999 1.587054 CCAAGAGAGCGTCTCCGTT 59.413 57.895 10.24 0.37 44.42 4.44
4449 5001 0.456995 CAAGAGAGCGTCTCCGTTCC 60.457 60.000 10.24 0.00 44.42 3.62
4450 5002 0.609681 AAGAGAGCGTCTCCGTTCCT 60.610 55.000 10.24 0.00 44.42 3.36
4452 5004 1.995646 GAGAGCGTCTCCGTTCCTCC 61.996 65.000 3.66 0.00 44.34 4.30
4456 5008 2.284405 GTCTCCGTTCCTCCCCCA 60.284 66.667 0.00 0.00 0.00 4.96
4457 5009 2.284405 TCTCCGTTCCTCCCCCAC 60.284 66.667 0.00 0.00 0.00 4.61
4458 5010 3.771160 CTCCGTTCCTCCCCCACG 61.771 72.222 0.00 0.00 0.00 4.94
4459 5011 4.304413 TCCGTTCCTCCCCCACGA 62.304 66.667 0.00 0.00 35.93 4.35
4460 5012 4.078516 CCGTTCCTCCCCCACGAC 62.079 72.222 0.00 0.00 35.93 4.34
4461 5013 4.078516 CGTTCCTCCCCCACGACC 62.079 72.222 0.00 0.00 35.93 4.79
4462 5014 3.714001 GTTCCTCCCCCACGACCC 61.714 72.222 0.00 0.00 0.00 4.46
4478 5030 2.356667 CCCCAGGGAGCCTTGTTC 59.643 66.667 7.25 0.00 37.50 3.18
4479 5031 2.234296 CCCCAGGGAGCCTTGTTCT 61.234 63.158 7.25 0.00 37.50 3.01
4480 5032 0.914417 CCCCAGGGAGCCTTGTTCTA 60.914 60.000 7.25 0.00 37.50 2.10
4481 5033 0.991920 CCCAGGGAGCCTTGTTCTAA 59.008 55.000 0.00 0.00 0.00 2.10
4482 5034 1.340114 CCCAGGGAGCCTTGTTCTAAC 60.340 57.143 0.00 0.00 0.00 2.34
4483 5035 1.340114 CCAGGGAGCCTTGTTCTAACC 60.340 57.143 0.00 0.00 0.00 2.85
4484 5036 1.351017 CAGGGAGCCTTGTTCTAACCA 59.649 52.381 0.00 0.00 0.00 3.67
4485 5037 2.025887 CAGGGAGCCTTGTTCTAACCAT 60.026 50.000 0.00 0.00 0.00 3.55
4486 5038 2.025887 AGGGAGCCTTGTTCTAACCATG 60.026 50.000 0.00 0.00 0.00 3.66
4487 5039 2.369394 GGAGCCTTGTTCTAACCATGG 58.631 52.381 11.19 11.19 0.00 3.66
4488 5040 2.369394 GAGCCTTGTTCTAACCATGGG 58.631 52.381 18.09 0.00 0.00 4.00
4489 5041 1.005924 AGCCTTGTTCTAACCATGGGG 59.994 52.381 18.09 5.05 41.29 4.96
4490 5042 1.005450 GCCTTGTTCTAACCATGGGGA 59.995 52.381 18.09 8.44 38.05 4.81
4491 5043 2.358195 GCCTTGTTCTAACCATGGGGAT 60.358 50.000 18.09 4.34 38.05 3.85
4492 5044 3.117663 GCCTTGTTCTAACCATGGGGATA 60.118 47.826 18.09 5.37 38.05 2.59
4493 5045 4.447762 GCCTTGTTCTAACCATGGGGATAT 60.448 45.833 18.09 0.00 38.05 1.63
4494 5046 5.316987 CCTTGTTCTAACCATGGGGATATC 58.683 45.833 18.09 3.08 38.05 1.63
4495 5047 4.617253 TGTTCTAACCATGGGGATATCG 57.383 45.455 18.09 0.00 38.05 2.92
4496 5048 3.326588 TGTTCTAACCATGGGGATATCGG 59.673 47.826 18.09 0.00 38.05 4.18
4497 5049 3.553375 TCTAACCATGGGGATATCGGA 57.447 47.619 18.09 0.00 38.05 4.55
4498 5050 4.074799 TCTAACCATGGGGATATCGGAT 57.925 45.455 18.09 0.00 38.05 4.18
4499 5051 4.435137 TCTAACCATGGGGATATCGGATT 58.565 43.478 18.09 0.00 38.05 3.01
4500 5052 3.439857 AACCATGGGGATATCGGATTG 57.560 47.619 18.09 0.00 38.05 2.67
4501 5053 2.631384 ACCATGGGGATATCGGATTGA 58.369 47.619 18.09 0.00 38.05 2.57
4502 5054 3.192944 ACCATGGGGATATCGGATTGAT 58.807 45.455 18.09 0.00 38.33 2.57
4503 5055 3.200825 ACCATGGGGATATCGGATTGATC 59.799 47.826 18.09 0.00 36.87 2.92
4504 5056 3.434167 CCATGGGGATATCGGATTGATCC 60.434 52.174 2.85 10.20 39.06 3.36
4509 5061 3.866651 GGATATCGGATTGATCCCACTG 58.133 50.000 8.13 0.00 44.24 3.66
4510 5062 3.515502 GGATATCGGATTGATCCCACTGA 59.484 47.826 8.13 0.00 44.24 3.41
4511 5063 4.020218 GGATATCGGATTGATCCCACTGAA 60.020 45.833 8.13 0.00 44.24 3.02
4512 5064 2.691409 TCGGATTGATCCCACTGAAC 57.309 50.000 4.49 0.00 44.24 3.18
4513 5065 2.187958 TCGGATTGATCCCACTGAACT 58.812 47.619 4.49 0.00 44.24 3.01
4514 5066 2.571653 TCGGATTGATCCCACTGAACTT 59.428 45.455 4.49 0.00 44.24 2.66
4515 5067 3.009033 TCGGATTGATCCCACTGAACTTT 59.991 43.478 4.49 0.00 44.24 2.66
4516 5068 3.758554 CGGATTGATCCCACTGAACTTTT 59.241 43.478 4.49 0.00 44.24 2.27
4517 5069 4.142600 CGGATTGATCCCACTGAACTTTTC 60.143 45.833 4.49 0.00 44.24 2.29
4518 5070 4.158579 GGATTGATCCCACTGAACTTTTCC 59.841 45.833 0.00 0.00 41.20 3.13
4519 5071 3.874383 TGATCCCACTGAACTTTTCCA 57.126 42.857 0.00 0.00 0.00 3.53
4520 5072 3.486383 TGATCCCACTGAACTTTTCCAC 58.514 45.455 0.00 0.00 0.00 4.02
4521 5073 3.117701 TGATCCCACTGAACTTTTCCACA 60.118 43.478 0.00 0.00 0.00 4.17
4522 5074 3.374042 TCCCACTGAACTTTTCCACAA 57.626 42.857 0.00 0.00 0.00 3.33
4523 5075 3.909732 TCCCACTGAACTTTTCCACAAT 58.090 40.909 0.00 0.00 0.00 2.71
4524 5076 3.636300 TCCCACTGAACTTTTCCACAATG 59.364 43.478 0.00 0.00 0.00 2.82
4525 5077 3.383761 CCACTGAACTTTTCCACAATGC 58.616 45.455 0.00 0.00 0.00 3.56
4526 5078 3.383761 CACTGAACTTTTCCACAATGCC 58.616 45.455 0.00 0.00 0.00 4.40
4527 5079 3.068590 CACTGAACTTTTCCACAATGCCT 59.931 43.478 0.00 0.00 0.00 4.75
4528 5080 3.068590 ACTGAACTTTTCCACAATGCCTG 59.931 43.478 0.00 0.00 0.00 4.85
4529 5081 2.224018 TGAACTTTTCCACAATGCCTGC 60.224 45.455 0.00 0.00 0.00 4.85
4530 5082 0.681175 ACTTTTCCACAATGCCTGCC 59.319 50.000 0.00 0.00 0.00 4.85
4531 5083 0.680618 CTTTTCCACAATGCCTGCCA 59.319 50.000 0.00 0.00 0.00 4.92
4532 5084 1.070445 CTTTTCCACAATGCCTGCCAA 59.930 47.619 0.00 0.00 0.00 4.52
4533 5085 1.350071 TTTCCACAATGCCTGCCAAT 58.650 45.000 0.00 0.00 0.00 3.16
4534 5086 0.896923 TTCCACAATGCCTGCCAATC 59.103 50.000 0.00 0.00 0.00 2.67
4535 5087 0.971959 TCCACAATGCCTGCCAATCC 60.972 55.000 0.00 0.00 0.00 3.01
4536 5088 0.974010 CCACAATGCCTGCCAATCCT 60.974 55.000 0.00 0.00 0.00 3.24
4537 5089 0.899720 CACAATGCCTGCCAATCCTT 59.100 50.000 0.00 0.00 0.00 3.36
4538 5090 1.134907 CACAATGCCTGCCAATCCTTC 60.135 52.381 0.00 0.00 0.00 3.46
4539 5091 1.187974 CAATGCCTGCCAATCCTTCA 58.812 50.000 0.00 0.00 0.00 3.02
4540 5092 1.134907 CAATGCCTGCCAATCCTTCAC 60.135 52.381 0.00 0.00 0.00 3.18
4541 5093 0.685458 ATGCCTGCCAATCCTTCACC 60.685 55.000 0.00 0.00 0.00 4.02
4542 5094 1.000396 GCCTGCCAATCCTTCACCT 60.000 57.895 0.00 0.00 0.00 4.00
4543 5095 1.034292 GCCTGCCAATCCTTCACCTC 61.034 60.000 0.00 0.00 0.00 3.85
4544 5096 0.745845 CCTGCCAATCCTTCACCTCG 60.746 60.000 0.00 0.00 0.00 4.63
4545 5097 0.745845 CTGCCAATCCTTCACCTCGG 60.746 60.000 0.00 0.00 0.00 4.63
4546 5098 1.299976 GCCAATCCTTCACCTCGGT 59.700 57.895 0.00 0.00 0.00 4.69
4547 5099 1.026718 GCCAATCCTTCACCTCGGTG 61.027 60.000 9.82 9.82 46.64 4.94
4548 5100 1.026718 CCAATCCTTCACCTCGGTGC 61.027 60.000 11.21 0.00 45.04 5.01
4549 5101 1.079127 AATCCTTCACCTCGGTGCG 60.079 57.895 11.21 4.97 45.04 5.34
4550 5102 3.665675 ATCCTTCACCTCGGTGCGC 62.666 63.158 11.21 0.00 45.04 6.09
4551 5103 4.379243 CCTTCACCTCGGTGCGCT 62.379 66.667 9.73 0.00 45.04 5.92
4552 5104 2.357517 CTTCACCTCGGTGCGCTT 60.358 61.111 9.73 0.00 45.04 4.68
4553 5105 2.664851 TTCACCTCGGTGCGCTTG 60.665 61.111 9.73 0.00 45.04 4.01
4554 5106 3.454587 TTCACCTCGGTGCGCTTGT 62.455 57.895 9.73 0.00 45.04 3.16
4555 5107 2.933878 TTCACCTCGGTGCGCTTGTT 62.934 55.000 9.73 0.00 45.04 2.83
4556 5108 2.665185 ACCTCGGTGCGCTTGTTC 60.665 61.111 9.73 0.00 0.00 3.18
4557 5109 3.423154 CCTCGGTGCGCTTGTTCC 61.423 66.667 9.73 2.55 0.00 3.62
4558 5110 2.357517 CTCGGTGCGCTTGTTCCT 60.358 61.111 9.73 0.00 0.00 3.36
4559 5111 1.961277 CTCGGTGCGCTTGTTCCTT 60.961 57.895 9.73 0.00 0.00 3.36
4560 5112 1.901650 CTCGGTGCGCTTGTTCCTTC 61.902 60.000 9.73 0.00 0.00 3.46
4561 5113 1.961277 CGGTGCGCTTGTTCCTTCT 60.961 57.895 9.73 0.00 0.00 2.85
4562 5114 1.869690 GGTGCGCTTGTTCCTTCTC 59.130 57.895 9.73 0.00 0.00 2.87
4563 5115 1.493311 GTGCGCTTGTTCCTTCTCG 59.507 57.895 9.73 0.00 0.00 4.04
4564 5116 1.667830 TGCGCTTGTTCCTTCTCGG 60.668 57.895 9.73 0.00 0.00 4.63
4565 5117 3.028366 GCGCTTGTTCCTTCTCGGC 62.028 63.158 0.00 0.00 0.00 5.54
4566 5118 1.374758 CGCTTGTTCCTTCTCGGCT 60.375 57.895 0.00 0.00 0.00 5.52
4567 5119 0.108804 CGCTTGTTCCTTCTCGGCTA 60.109 55.000 0.00 0.00 0.00 3.93
4568 5120 1.360820 GCTTGTTCCTTCTCGGCTAC 58.639 55.000 0.00 0.00 0.00 3.58
4569 5121 1.066787 GCTTGTTCCTTCTCGGCTACT 60.067 52.381 0.00 0.00 0.00 2.57
4570 5122 2.611518 CTTGTTCCTTCTCGGCTACTG 58.388 52.381 0.00 0.00 0.00 2.74
4571 5123 0.246635 TGTTCCTTCTCGGCTACTGC 59.753 55.000 0.00 0.00 38.76 4.40
4572 5124 0.802607 GTTCCTTCTCGGCTACTGCG 60.803 60.000 0.00 0.00 40.82 5.18
4573 5125 0.963856 TTCCTTCTCGGCTACTGCGA 60.964 55.000 0.00 0.00 40.82 5.10
4574 5126 1.226717 CCTTCTCGGCTACTGCGAC 60.227 63.158 0.00 0.00 40.82 5.19
4575 5127 1.658686 CCTTCTCGGCTACTGCGACT 61.659 60.000 0.00 0.00 40.82 4.18
4576 5128 1.015109 CTTCTCGGCTACTGCGACTA 58.985 55.000 0.00 0.00 40.82 2.59
4577 5129 0.731417 TTCTCGGCTACTGCGACTAC 59.269 55.000 0.00 0.00 40.82 2.73
4578 5130 1.011019 CTCGGCTACTGCGACTACG 60.011 63.158 0.00 0.00 40.82 3.51
4579 5131 1.703438 CTCGGCTACTGCGACTACGT 61.703 60.000 0.00 0.00 41.98 3.57
4580 5132 1.582937 CGGCTACTGCGACTACGTG 60.583 63.158 0.00 0.00 41.98 4.49
4581 5133 1.872679 GGCTACTGCGACTACGTGC 60.873 63.158 0.00 0.00 41.98 5.34
4582 5134 1.136984 GCTACTGCGACTACGTGCT 59.863 57.895 0.00 0.00 41.98 4.40
4583 5135 1.134530 GCTACTGCGACTACGTGCTG 61.135 60.000 0.00 0.00 41.98 4.41
4584 5136 1.134530 CTACTGCGACTACGTGCTGC 61.135 60.000 0.00 0.00 41.98 5.25
4586 5138 3.946305 CTGCGACTACGTGCTGCGA 62.946 63.158 0.00 0.00 44.77 5.10
4587 5139 3.533691 GCGACTACGTGCTGCGAC 61.534 66.667 0.00 0.00 44.77 5.19
4588 5140 3.231260 CGACTACGTGCTGCGACG 61.231 66.667 18.29 18.29 44.77 5.12
4589 5141 2.175078 GACTACGTGCTGCGACGA 59.825 61.111 23.94 11.51 44.77 4.20
4590 5142 1.863880 GACTACGTGCTGCGACGAG 60.864 63.158 23.94 18.87 44.77 4.18
4601 5153 4.873129 CGACGAGCCATCCCCGTG 62.873 72.222 0.00 0.00 36.60 4.94
4602 5154 4.530857 GACGAGCCATCCCCGTGG 62.531 72.222 0.00 0.00 42.35 4.94
4604 5156 4.530857 CGAGCCATCCCCGTGGAC 62.531 72.222 0.00 0.00 45.58 4.02
4605 5157 4.176752 GAGCCATCCCCGTGGACC 62.177 72.222 0.00 0.00 45.58 4.46
4606 5158 4.741239 AGCCATCCCCGTGGACCT 62.741 66.667 0.00 0.00 45.58 3.85
4607 5159 4.176752 GCCATCCCCGTGGACCTC 62.177 72.222 0.00 0.00 45.58 3.85
4608 5160 3.480133 CCATCCCCGTGGACCTCC 61.480 72.222 0.00 0.00 45.58 4.30
4609 5161 2.365635 CATCCCCGTGGACCTCCT 60.366 66.667 0.00 0.00 45.58 3.69
4610 5162 2.041819 ATCCCCGTGGACCTCCTC 60.042 66.667 0.00 0.00 45.58 3.71
4611 5163 2.637640 ATCCCCGTGGACCTCCTCT 61.638 63.158 0.00 0.00 45.58 3.69
4612 5164 2.182858 ATCCCCGTGGACCTCCTCTT 62.183 60.000 0.00 0.00 45.58 2.85
4613 5165 2.359967 CCCCGTGGACCTCCTCTTC 61.360 68.421 0.00 0.00 36.82 2.87
4614 5166 1.305381 CCCGTGGACCTCCTCTTCT 60.305 63.158 0.00 0.00 36.82 2.85
4615 5167 0.905337 CCCGTGGACCTCCTCTTCTT 60.905 60.000 0.00 0.00 36.82 2.52
4628 5180 5.879777 CCTCCTCTTCTTCAATTCTTTCCTC 59.120 44.000 0.00 0.00 0.00 3.71
4651 5203 1.824230 TGCGCTTTAATTTCCAGCCAT 59.176 42.857 9.73 0.00 0.00 4.40
4700 5252 2.599281 CCCCCGTTTGGAACCACC 60.599 66.667 0.00 0.00 37.49 4.61
4701 5253 2.981350 CCCCGTTTGGAACCACCG 60.981 66.667 0.00 0.00 42.61 4.94
4720 5272 1.971695 GTCCTTTCCCTGCCAACCG 60.972 63.158 0.00 0.00 0.00 4.44
4757 5450 5.106237 ACTCATTTCATCAGCAAGCTTCTTC 60.106 40.000 0.00 0.00 0.00 2.87
4864 5558 0.676736 TGGTACTGTGTGCGTGATCA 59.323 50.000 0.00 0.00 0.00 2.92
4866 5560 2.494073 TGGTACTGTGTGCGTGATCATA 59.506 45.455 0.00 0.00 0.00 2.15
4868 5562 3.736252 GGTACTGTGTGCGTGATCATATC 59.264 47.826 0.00 0.00 0.00 1.63
4869 5563 2.826428 ACTGTGTGCGTGATCATATCC 58.174 47.619 0.00 0.00 0.00 2.59
4870 5564 2.432146 ACTGTGTGCGTGATCATATCCT 59.568 45.455 0.00 0.00 0.00 3.24
4874 6530 5.049828 TGTGTGCGTGATCATATCCTTTAG 58.950 41.667 0.00 0.00 0.00 1.85
4920 6576 1.940613 CTTTACGGGCCACTGATTAGC 59.059 52.381 4.39 0.00 0.00 3.09
4935 6591 3.312421 TGATTAGCAGGCTTTATTGACGC 59.688 43.478 0.00 0.00 0.00 5.19
4940 6596 3.127030 AGCAGGCTTTATTGACGCTTAAC 59.873 43.478 0.00 0.00 0.00 2.01
4969 6625 4.710324 TGATTACTCCGTTTCAACCAACT 58.290 39.130 0.00 0.00 0.00 3.16
4978 6634 3.364964 CGTTTCAACCAACTGATACAGCC 60.365 47.826 0.00 0.00 34.37 4.85
4982 6638 1.656587 ACCAACTGATACAGCCTGGA 58.343 50.000 20.01 0.00 38.99 3.86
5074 6730 3.318275 GCTCATGCATTTCAGATGGATGT 59.682 43.478 16.49 0.00 44.67 3.06
5097 6753 0.824109 TATCCCGCCTCTTGTGACTG 59.176 55.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
352 375 2.981302 CAGACCACGCATCTCCCA 59.019 61.111 0.00 0.00 0.00 4.37
471 494 1.433064 CGCGGGGAAAACATCATGG 59.567 57.895 0.00 0.00 0.00 3.66
752 781 1.936767 GCCACCTGGATCCCATGGAA 61.937 60.000 23.69 0.00 36.14 3.53
859 890 9.781834 TTTTACATCTCGGCTTGTTTTATTATG 57.218 29.630 0.00 0.00 0.00 1.90
929 960 3.561725 GCTGCAGCCTAACCAACTTATAG 59.438 47.826 28.76 0.00 34.31 1.31
962 993 2.759114 CCCACCTGGACATGCAGT 59.241 61.111 0.00 0.00 37.39 4.40
1307 1339 8.755018 CGAACAAAATTTATGGCAATCTTATCC 58.245 33.333 0.00 0.00 0.00 2.59
1675 1707 9.448438 GTGGTAATGGAAATATAGCACATCATA 57.552 33.333 8.88 0.00 43.76 2.15
1721 1753 6.038271 GCAGACCTGTAAATGTATAAACCTGG 59.962 42.308 0.00 0.00 0.00 4.45
1756 1788 3.181440 TGTTGGCTCTCTCAGTTTCCATT 60.181 43.478 0.00 0.00 0.00 3.16
1760 1792 3.471680 ACTTGTTGGCTCTCTCAGTTTC 58.528 45.455 0.00 0.00 0.00 2.78
1771 1803 5.564259 CGTGTAGTAGTAGAACTTGTTGGCT 60.564 44.000 0.00 0.00 0.00 4.75
1851 1883 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
1853 1885 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
1854 1886 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
1857 1889 4.034510 GCTGAGTCATCTATTTTGGAACGG 59.965 45.833 0.00 0.00 0.00 4.44
1858 1890 4.034510 GGCTGAGTCATCTATTTTGGAACG 59.965 45.833 0.00 0.00 0.00 3.95
1859 1891 5.189180 AGGCTGAGTCATCTATTTTGGAAC 58.811 41.667 0.00 0.00 0.00 3.62
1860 1892 5.441718 AGGCTGAGTCATCTATTTTGGAA 57.558 39.130 0.00 0.00 0.00 3.53
1862 1894 4.946157 ACAAGGCTGAGTCATCTATTTTGG 59.054 41.667 0.00 0.00 0.00 3.28
1863 1895 6.820656 AGTACAAGGCTGAGTCATCTATTTTG 59.179 38.462 0.00 0.00 0.00 2.44
1864 1896 6.951971 AGTACAAGGCTGAGTCATCTATTTT 58.048 36.000 0.00 0.00 0.00 1.82
1865 1897 6.552445 AGTACAAGGCTGAGTCATCTATTT 57.448 37.500 0.00 0.00 0.00 1.40
1866 1898 7.343316 ACTTAGTACAAGGCTGAGTCATCTATT 59.657 37.037 0.00 0.00 28.43 1.73
1867 1899 6.836527 ACTTAGTACAAGGCTGAGTCATCTAT 59.163 38.462 0.00 0.00 28.43 1.98
1868 1900 6.188407 ACTTAGTACAAGGCTGAGTCATCTA 58.812 40.000 0.00 0.00 28.43 1.98
1869 1901 5.020132 ACTTAGTACAAGGCTGAGTCATCT 58.980 41.667 0.00 0.00 28.43 2.90
1870 1902 5.331876 ACTTAGTACAAGGCTGAGTCATC 57.668 43.478 0.00 0.00 28.43 2.92
1871 1903 5.746990 AACTTAGTACAAGGCTGAGTCAT 57.253 39.130 0.00 0.00 32.66 3.06
1872 1904 5.546621 AAACTTAGTACAAGGCTGAGTCA 57.453 39.130 0.00 0.00 32.66 3.41
1873 1905 6.689554 ACTAAACTTAGTACAAGGCTGAGTC 58.310 40.000 0.15 0.00 41.92 3.36
1874 1906 6.667558 ACTAAACTTAGTACAAGGCTGAGT 57.332 37.500 0.15 0.00 41.92 3.41
1895 1927 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
1896 1928 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
1897 1929 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
1898 1930 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
1899 1931 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
1900 1932 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
1901 1933 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
1902 1934 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
1903 1935 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
1904 1936 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
1905 1937 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
1906 1938 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
1907 1939 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
1908 1940 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
1909 1941 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
1910 1942 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
1911 1943 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
1912 1944 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
1913 1945 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
1914 1946 5.703730 ATTACTCCCTCCGTTCCAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
1915 1947 4.586306 ATTACTCCCTCCGTTCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
1916 1948 5.427481 AGATATTACTCCCTCCGTTCCAAAA 59.573 40.000 0.00 0.00 0.00 2.44
1917 1949 4.966805 AGATATTACTCCCTCCGTTCCAAA 59.033 41.667 0.00 0.00 0.00 3.28
1918 1950 4.553678 AGATATTACTCCCTCCGTTCCAA 58.446 43.478 0.00 0.00 0.00 3.53
1919 1951 4.194678 AGATATTACTCCCTCCGTTCCA 57.805 45.455 0.00 0.00 0.00 3.53
1920 1952 5.774184 AGTTAGATATTACTCCCTCCGTTCC 59.226 44.000 0.00 0.00 0.00 3.62
1921 1953 6.897706 AGTTAGATATTACTCCCTCCGTTC 57.102 41.667 0.00 0.00 0.00 3.95
1922 1954 7.672122 AAAGTTAGATATTACTCCCTCCGTT 57.328 36.000 0.00 0.00 0.00 4.44
1923 1955 7.672122 AAAAGTTAGATATTACTCCCTCCGT 57.328 36.000 0.00 0.00 0.00 4.69
1959 1991 7.947782 AGGGGTATACAAAGGATCATAAAGA 57.052 36.000 5.01 0.00 0.00 2.52
2048 2082 2.886862 TGCACACTTTTGGATGGTTG 57.113 45.000 0.00 0.00 0.00 3.77
2179 2213 2.225491 GTGTTCGCAGGCATGTTTCTTA 59.775 45.455 0.00 0.00 0.00 2.10
2202 2236 5.402464 AAACAAGTTTAAAAGCCATTGCG 57.598 34.783 0.00 0.00 44.33 4.85
2230 2264 5.366460 TGTAAAACGGAATACCAGTCAACA 58.634 37.500 0.00 0.00 35.59 3.33
2455 2494 2.034053 GCACGCTCTAGAGATGCTAACT 59.966 50.000 28.89 4.98 38.36 2.24
2539 2578 4.560128 TCTGCTTTGCTAGACAGTAACAG 58.440 43.478 0.00 0.00 32.92 3.16
2541 2580 5.334182 GGTTTCTGCTTTGCTAGACAGTAAC 60.334 44.000 0.00 10.82 37.44 2.50
2734 2773 3.926058 ACAACTTTAGGATATGGGCGT 57.074 42.857 0.00 0.00 0.00 5.68
2748 2787 3.877508 GTGAGCAACTGGTAGAACAACTT 59.122 43.478 0.00 0.00 0.00 2.66
2751 2790 3.838244 AGTGAGCAACTGGTAGAACAA 57.162 42.857 0.00 0.00 37.88 2.83
2819 2858 5.899547 TCATATGCCGATGAGATTACCCTAT 59.100 40.000 0.00 0.00 32.05 2.57
2869 3025 5.032846 TCATCTTCAGGAGGATTTAGTGGT 58.967 41.667 0.00 0.00 29.15 4.16
2895 3051 4.012895 CGCGGACAACTGTGCCAC 62.013 66.667 0.00 0.00 32.36 5.01
2930 3086 1.955451 TAAAGGAAGCTTACCGGGGA 58.045 50.000 6.32 0.00 0.00 4.81
2957 3113 2.830923 AGCAGACTAGATCACAGCAACT 59.169 45.455 0.00 0.00 0.00 3.16
2958 3114 3.244033 AGCAGACTAGATCACAGCAAC 57.756 47.619 0.00 0.00 0.00 4.17
3037 3358 1.301087 GCAACAGCAATGGCAGCAA 60.301 52.632 0.00 0.00 44.61 3.91
3147 3468 8.158132 TCCAACATACTACAAAACAGGTGATAA 58.842 33.333 0.00 0.00 0.00 1.75
3194 3515 2.721274 TGAACCATCAAATTGCCACG 57.279 45.000 0.00 0.00 30.99 4.94
3408 3729 3.004734 ACAAGCAGCACAAGGTAAACATC 59.995 43.478 0.00 0.00 0.00 3.06
3451 3772 6.153340 ACCTTGTAATCATCCAATTCCAAGTG 59.847 38.462 0.00 0.00 33.24 3.16
3664 3985 5.121221 ACTGCTGTAAAACAATGCTAACC 57.879 39.130 0.00 0.00 0.00 2.85
3701 4022 6.022163 AGAAATTCCTGTCAATCAGCAAAG 57.978 37.500 0.00 0.00 42.38 2.77
3709 4030 7.613411 CCTTCTCCTTTAGAAATTCCTGTCAAT 59.387 37.037 0.00 0.00 43.66 2.57
3821 4151 6.014669 CCTGAACAAGTTTTGGGGAATATTGA 60.015 38.462 0.00 0.00 34.12 2.57
3929 4259 0.181824 CCGGGGTTTTCACGGGATAT 59.818 55.000 0.00 0.00 45.12 1.63
3935 4265 1.081094 GTGTATCCGGGGTTTTCACG 58.919 55.000 0.00 0.00 0.00 4.35
3989 4319 4.627611 CATTCAAGTAATGGGCACTCAG 57.372 45.455 0.00 0.00 41.19 3.35
4043 4373 6.533723 CCTCGACTGCACACAATAGTAAATAA 59.466 38.462 0.00 0.00 0.00 1.40
4057 4387 1.993370 GTTGATGTACCTCGACTGCAC 59.007 52.381 10.41 0.00 0.00 4.57
4124 4454 5.911280 CACAGTTTAGCAAACATGTGAGAAG 59.089 40.000 21.86 0.00 44.25 2.85
4125 4455 5.588246 TCACAGTTTAGCAAACATGTGAGAA 59.412 36.000 23.18 13.68 44.62 2.87
4126 4456 5.122519 TCACAGTTTAGCAAACATGTGAGA 58.877 37.500 23.18 13.16 44.62 3.27
4224 4554 5.362717 TGTATCTAATGGACCAACACGAGAT 59.637 40.000 0.00 5.37 32.75 2.75
4288 4643 0.178992 CTCAGGGTTGTCCAGGCAAA 60.179 55.000 0.00 0.00 38.24 3.68
4292 4647 0.393537 GATGCTCAGGGTTGTCCAGG 60.394 60.000 0.00 0.00 38.24 4.45
4402 4954 1.269517 TGCTTGCGGTGGAATTTTCAC 60.270 47.619 0.00 0.00 34.61 3.18
4423 4975 1.289380 GACGCTCTCTTGGGTCGTT 59.711 57.895 0.00 0.00 39.45 3.85
4445 4997 3.714001 GGGTCGTGGGGGAGGAAC 61.714 72.222 0.00 0.00 0.00 3.62
4458 5010 3.732849 CAAGGCTCCCTGGGGGTC 61.733 72.222 9.91 9.91 44.74 4.46
4459 5011 4.617595 ACAAGGCTCCCTGGGGGT 62.618 66.667 15.57 0.00 44.74 4.95
4460 5012 3.268032 AACAAGGCTCCCTGGGGG 61.268 66.667 14.00 11.51 46.11 5.40
4461 5013 0.914417 TAGAACAAGGCTCCCTGGGG 60.914 60.000 14.00 4.79 32.13 4.96
4462 5014 0.991920 TTAGAACAAGGCTCCCTGGG 59.008 55.000 6.33 6.33 32.13 4.45
4463 5015 1.340114 GGTTAGAACAAGGCTCCCTGG 60.340 57.143 0.00 0.00 32.13 4.45
4464 5016 1.351017 TGGTTAGAACAAGGCTCCCTG 59.649 52.381 0.00 0.00 32.13 4.45
4465 5017 1.742308 TGGTTAGAACAAGGCTCCCT 58.258 50.000 0.00 0.00 33.87 4.20
4466 5018 2.369394 CATGGTTAGAACAAGGCTCCC 58.631 52.381 0.00 0.00 0.00 4.30
4467 5019 2.369394 CCATGGTTAGAACAAGGCTCC 58.631 52.381 2.57 0.00 0.00 4.70
4468 5020 2.369394 CCCATGGTTAGAACAAGGCTC 58.631 52.381 11.73 0.00 0.00 4.70
4469 5021 1.005924 CCCCATGGTTAGAACAAGGCT 59.994 52.381 11.73 0.00 0.00 4.58
4470 5022 1.005450 TCCCCATGGTTAGAACAAGGC 59.995 52.381 11.73 0.00 0.00 4.35
4471 5023 3.669939 ATCCCCATGGTTAGAACAAGG 57.330 47.619 11.73 0.93 0.00 3.61
4472 5024 4.997395 CGATATCCCCATGGTTAGAACAAG 59.003 45.833 11.73 0.00 0.00 3.16
4473 5025 4.202419 CCGATATCCCCATGGTTAGAACAA 60.202 45.833 11.73 0.00 0.00 2.83
4474 5026 3.326588 CCGATATCCCCATGGTTAGAACA 59.673 47.826 11.73 0.00 0.00 3.18
4475 5027 3.581332 TCCGATATCCCCATGGTTAGAAC 59.419 47.826 11.73 0.00 0.00 3.01
4476 5028 3.864328 TCCGATATCCCCATGGTTAGAA 58.136 45.455 11.73 0.00 0.00 2.10
4477 5029 3.553375 TCCGATATCCCCATGGTTAGA 57.447 47.619 11.73 4.85 0.00 2.10
4478 5030 4.225042 TCAATCCGATATCCCCATGGTTAG 59.775 45.833 11.73 0.00 0.00 2.34
4479 5031 4.172020 TCAATCCGATATCCCCATGGTTA 58.828 43.478 11.73 0.00 0.00 2.85
4480 5032 2.986019 TCAATCCGATATCCCCATGGTT 59.014 45.455 11.73 0.00 0.00 3.67
4481 5033 2.631384 TCAATCCGATATCCCCATGGT 58.369 47.619 11.73 0.00 0.00 3.55
4482 5034 3.434167 GGATCAATCCGATATCCCCATGG 60.434 52.174 4.14 4.14 37.19 3.66
4483 5035 3.813443 GGATCAATCCGATATCCCCATG 58.187 50.000 0.00 0.00 37.19 3.66
4495 5047 4.158579 GGAAAAGTTCAGTGGGATCAATCC 59.841 45.833 0.01 0.01 46.41 3.01
4496 5048 4.766891 TGGAAAAGTTCAGTGGGATCAATC 59.233 41.667 0.00 0.00 0.00 2.67
4497 5049 4.524328 GTGGAAAAGTTCAGTGGGATCAAT 59.476 41.667 0.00 0.00 0.00 2.57
4498 5050 3.888930 GTGGAAAAGTTCAGTGGGATCAA 59.111 43.478 0.00 0.00 0.00 2.57
4499 5051 3.117701 TGTGGAAAAGTTCAGTGGGATCA 60.118 43.478 0.00 0.00 0.00 2.92
4500 5052 3.486383 TGTGGAAAAGTTCAGTGGGATC 58.514 45.455 0.00 0.00 0.00 3.36
4501 5053 3.593442 TGTGGAAAAGTTCAGTGGGAT 57.407 42.857 0.00 0.00 0.00 3.85
4502 5054 3.374042 TTGTGGAAAAGTTCAGTGGGA 57.626 42.857 0.00 0.00 0.00 4.37
4503 5055 3.799917 GCATTGTGGAAAAGTTCAGTGGG 60.800 47.826 0.00 0.00 0.00 4.61
4504 5056 3.383761 GCATTGTGGAAAAGTTCAGTGG 58.616 45.455 0.00 0.00 0.00 4.00
4505 5057 3.068590 AGGCATTGTGGAAAAGTTCAGTG 59.931 43.478 0.00 0.00 0.00 3.66
4506 5058 3.068590 CAGGCATTGTGGAAAAGTTCAGT 59.931 43.478 0.00 0.00 0.00 3.41
4507 5059 3.645884 CAGGCATTGTGGAAAAGTTCAG 58.354 45.455 0.00 0.00 0.00 3.02
4508 5060 2.224018 GCAGGCATTGTGGAAAAGTTCA 60.224 45.455 0.00 0.00 0.00 3.18
4509 5061 2.407090 GCAGGCATTGTGGAAAAGTTC 58.593 47.619 0.00 0.00 0.00 3.01
4510 5062 1.070601 GGCAGGCATTGTGGAAAAGTT 59.929 47.619 0.00 0.00 0.00 2.66
4511 5063 0.681175 GGCAGGCATTGTGGAAAAGT 59.319 50.000 0.00 0.00 0.00 2.66
4512 5064 0.680618 TGGCAGGCATTGTGGAAAAG 59.319 50.000 0.00 0.00 0.00 2.27
4513 5065 1.126488 TTGGCAGGCATTGTGGAAAA 58.874 45.000 0.00 0.00 0.00 2.29
4514 5066 1.275856 GATTGGCAGGCATTGTGGAAA 59.724 47.619 0.00 0.00 0.00 3.13
4515 5067 0.896923 GATTGGCAGGCATTGTGGAA 59.103 50.000 0.00 0.00 0.00 3.53
4516 5068 0.971959 GGATTGGCAGGCATTGTGGA 60.972 55.000 0.00 0.00 0.00 4.02
4517 5069 0.974010 AGGATTGGCAGGCATTGTGG 60.974 55.000 0.00 0.00 0.00 4.17
4518 5070 0.899720 AAGGATTGGCAGGCATTGTG 59.100 50.000 0.00 0.00 0.00 3.33
4519 5071 1.188863 GAAGGATTGGCAGGCATTGT 58.811 50.000 0.00 0.00 0.00 2.71
4520 5072 1.134907 GTGAAGGATTGGCAGGCATTG 60.135 52.381 0.00 0.00 0.00 2.82
4521 5073 1.188863 GTGAAGGATTGGCAGGCATT 58.811 50.000 0.00 0.00 0.00 3.56
4522 5074 0.685458 GGTGAAGGATTGGCAGGCAT 60.685 55.000 0.00 0.00 0.00 4.40
4523 5075 1.304381 GGTGAAGGATTGGCAGGCA 60.304 57.895 0.00 0.00 0.00 4.75
4524 5076 1.000396 AGGTGAAGGATTGGCAGGC 60.000 57.895 0.00 0.00 0.00 4.85
4525 5077 0.745845 CGAGGTGAAGGATTGGCAGG 60.746 60.000 0.00 0.00 0.00 4.85
4526 5078 0.745845 CCGAGGTGAAGGATTGGCAG 60.746 60.000 0.00 0.00 0.00 4.85
4527 5079 1.299648 CCGAGGTGAAGGATTGGCA 59.700 57.895 0.00 0.00 0.00 4.92
4528 5080 1.299976 ACCGAGGTGAAGGATTGGC 59.700 57.895 0.00 0.00 0.00 4.52
4539 5091 2.665185 GAACAAGCGCACCGAGGT 60.665 61.111 11.47 0.00 0.00 3.85
4540 5092 3.423154 GGAACAAGCGCACCGAGG 61.423 66.667 11.47 0.00 0.00 4.63
4541 5093 1.901650 GAAGGAACAAGCGCACCGAG 61.902 60.000 11.47 0.00 0.00 4.63
4542 5094 1.959226 GAAGGAACAAGCGCACCGA 60.959 57.895 11.47 0.00 0.00 4.69
4543 5095 1.901650 GAGAAGGAACAAGCGCACCG 61.902 60.000 11.47 0.00 0.00 4.94
4544 5096 1.869690 GAGAAGGAACAAGCGCACC 59.130 57.895 11.47 4.77 0.00 5.01
4545 5097 1.493311 CGAGAAGGAACAAGCGCAC 59.507 57.895 11.47 0.00 0.00 5.34
4546 5098 1.667830 CCGAGAAGGAACAAGCGCA 60.668 57.895 11.47 0.00 45.00 6.09
4547 5099 3.028366 GCCGAGAAGGAACAAGCGC 62.028 63.158 0.00 0.00 45.00 5.92
4548 5100 0.108804 TAGCCGAGAAGGAACAAGCG 60.109 55.000 0.00 0.00 45.00 4.68
4549 5101 1.066787 AGTAGCCGAGAAGGAACAAGC 60.067 52.381 0.00 0.00 45.00 4.01
4550 5102 2.611518 CAGTAGCCGAGAAGGAACAAG 58.388 52.381 0.00 0.00 45.00 3.16
4551 5103 1.337823 GCAGTAGCCGAGAAGGAACAA 60.338 52.381 0.00 0.00 45.00 2.83
4552 5104 0.246635 GCAGTAGCCGAGAAGGAACA 59.753 55.000 0.00 0.00 45.00 3.18
4553 5105 0.802607 CGCAGTAGCCGAGAAGGAAC 60.803 60.000 0.00 0.00 45.00 3.62
4554 5106 0.963856 TCGCAGTAGCCGAGAAGGAA 60.964 55.000 0.00 0.00 45.00 3.36
4555 5107 1.378119 TCGCAGTAGCCGAGAAGGA 60.378 57.895 0.00 0.00 45.00 3.36
4556 5108 1.226717 GTCGCAGTAGCCGAGAAGG 60.227 63.158 0.00 0.00 44.97 3.46
4557 5109 1.015109 TAGTCGCAGTAGCCGAGAAG 58.985 55.000 0.00 0.00 37.52 2.85
4558 5110 0.731417 GTAGTCGCAGTAGCCGAGAA 59.269 55.000 0.00 0.00 37.52 2.87
4559 5111 1.426816 CGTAGTCGCAGTAGCCGAGA 61.427 60.000 0.00 0.00 37.52 4.04
4560 5112 1.011019 CGTAGTCGCAGTAGCCGAG 60.011 63.158 0.00 0.00 37.52 4.63
4561 5113 1.742880 ACGTAGTCGCAGTAGCCGA 60.743 57.895 0.00 0.00 29.74 5.54
4562 5114 1.582937 CACGTAGTCGCAGTAGCCG 60.583 63.158 0.00 0.00 41.61 5.52
4563 5115 1.872679 GCACGTAGTCGCAGTAGCC 60.873 63.158 0.00 0.00 41.61 3.93
4564 5116 1.134530 CAGCACGTAGTCGCAGTAGC 61.135 60.000 0.00 0.00 41.61 3.58
4565 5117 1.134530 GCAGCACGTAGTCGCAGTAG 61.135 60.000 0.00 0.00 41.61 2.57
4566 5118 1.154093 GCAGCACGTAGTCGCAGTA 60.154 57.895 0.00 0.00 41.61 2.74
4567 5119 2.430921 GCAGCACGTAGTCGCAGT 60.431 61.111 0.00 0.00 41.61 4.40
4568 5120 3.536394 CGCAGCACGTAGTCGCAG 61.536 66.667 0.00 0.00 41.61 5.18
4569 5121 4.032987 TCGCAGCACGTAGTCGCA 62.033 61.111 0.00 0.00 41.61 5.10
4570 5122 3.533691 GTCGCAGCACGTAGTCGC 61.534 66.667 0.00 0.00 41.61 5.19
4571 5123 3.231260 CGTCGCAGCACGTAGTCG 61.231 66.667 8.65 0.00 41.61 4.18
4572 5124 1.863880 CTCGTCGCAGCACGTAGTC 60.864 63.158 14.39 0.00 41.61 2.59
4573 5125 3.948086 GCTCGTCGCAGCACGTAGT 62.948 63.158 14.39 0.00 44.19 2.73
4574 5126 3.241059 GCTCGTCGCAGCACGTAG 61.241 66.667 14.39 11.87 44.19 3.51
4575 5127 4.771356 GGCTCGTCGCAGCACGTA 62.771 66.667 15.35 4.33 41.65 3.57
4578 5130 3.558411 GATGGCTCGTCGCAGCAC 61.558 66.667 15.35 7.94 41.65 4.40
4579 5131 4.819761 GGATGGCTCGTCGCAGCA 62.820 66.667 15.35 5.60 41.65 4.41
4581 5133 4.899239 GGGGATGGCTCGTCGCAG 62.899 72.222 11.61 0.00 41.67 5.18
4584 5136 4.873129 CACGGGGATGGCTCGTCG 62.873 72.222 0.00 0.00 34.73 5.12
4585 5137 4.530857 CCACGGGGATGGCTCGTC 62.531 72.222 0.00 0.00 34.73 4.20
4594 5146 2.800159 GAAGAGGAGGTCCACGGGGA 62.800 65.000 0.00 0.00 42.29 4.81
4595 5147 2.284699 AAGAGGAGGTCCACGGGG 60.285 66.667 0.00 0.00 38.89 5.73
4596 5148 0.905337 AAGAAGAGGAGGTCCACGGG 60.905 60.000 0.00 0.00 38.89 5.28
4597 5149 0.533032 GAAGAAGAGGAGGTCCACGG 59.467 60.000 0.00 0.00 38.89 4.94
4598 5150 1.257743 TGAAGAAGAGGAGGTCCACG 58.742 55.000 0.00 0.00 38.89 4.94
4599 5151 3.990959 ATTGAAGAAGAGGAGGTCCAC 57.009 47.619 0.00 0.00 38.89 4.02
4600 5152 4.171234 AGAATTGAAGAAGAGGAGGTCCA 58.829 43.478 0.00 0.00 38.89 4.02
4601 5153 4.835284 AGAATTGAAGAAGAGGAGGTCC 57.165 45.455 0.00 0.00 0.00 4.46
4602 5154 5.645929 GGAAAGAATTGAAGAAGAGGAGGTC 59.354 44.000 0.00 0.00 0.00 3.85
4603 5155 5.311913 AGGAAAGAATTGAAGAAGAGGAGGT 59.688 40.000 0.00 0.00 0.00 3.85
4604 5156 5.814481 AGGAAAGAATTGAAGAAGAGGAGG 58.186 41.667 0.00 0.00 0.00 4.30
4605 5157 5.580297 CGAGGAAAGAATTGAAGAAGAGGAG 59.420 44.000 0.00 0.00 0.00 3.69
4606 5158 5.482908 CGAGGAAAGAATTGAAGAAGAGGA 58.517 41.667 0.00 0.00 0.00 3.71
4607 5159 4.633565 CCGAGGAAAGAATTGAAGAAGAGG 59.366 45.833 0.00 0.00 0.00 3.69
4608 5160 5.121454 CACCGAGGAAAGAATTGAAGAAGAG 59.879 44.000 0.00 0.00 0.00 2.85
4609 5161 4.997395 CACCGAGGAAAGAATTGAAGAAGA 59.003 41.667 0.00 0.00 0.00 2.87
4610 5162 4.378874 GCACCGAGGAAAGAATTGAAGAAG 60.379 45.833 0.00 0.00 0.00 2.85
4611 5163 3.502211 GCACCGAGGAAAGAATTGAAGAA 59.498 43.478 0.00 0.00 0.00 2.52
4612 5164 3.074412 GCACCGAGGAAAGAATTGAAGA 58.926 45.455 0.00 0.00 0.00 2.87
4613 5165 2.159653 CGCACCGAGGAAAGAATTGAAG 60.160 50.000 0.00 0.00 0.00 3.02
4614 5166 1.804151 CGCACCGAGGAAAGAATTGAA 59.196 47.619 0.00 0.00 0.00 2.69
4615 5167 1.438651 CGCACCGAGGAAAGAATTGA 58.561 50.000 0.00 0.00 0.00 2.57
4628 5180 1.895051 CTGGAAATTAAAGCGCACCG 58.105 50.000 11.47 0.00 0.00 4.94
4651 5203 1.000385 CGCAAGCCATTGAGAAAACCA 60.000 47.619 0.00 0.00 38.37 3.67
4661 5213 3.665745 AATTTTCACTCGCAAGCCATT 57.334 38.095 0.00 0.00 37.18 3.16
4662 5214 3.578688 GAAATTTTCACTCGCAAGCCAT 58.421 40.909 4.25 0.00 37.18 4.40
4700 5252 1.971695 GTTGGCAGGGAAAGGACCG 60.972 63.158 0.00 0.00 0.00 4.79
4701 5253 1.606601 GGTTGGCAGGGAAAGGACC 60.607 63.158 0.00 0.00 0.00 4.46
4720 5272 3.261897 TGAAATGAGTCAGGAGGTTCCTC 59.738 47.826 10.13 10.13 45.66 3.71
4736 5429 4.158025 AGGAAGAAGCTTGCTGATGAAATG 59.842 41.667 2.10 0.00 0.00 2.32
4768 5461 0.670546 ACATCCGTGCAGAGGAAACG 60.671 55.000 14.08 8.83 41.69 3.60
4777 5470 4.006319 TGATAACAATCAACATCCGTGCA 58.994 39.130 0.00 0.00 0.00 4.57
4778 5471 4.614555 TGATAACAATCAACATCCGTGC 57.385 40.909 0.00 0.00 0.00 5.34
4805 5498 1.725706 CTTCTCGAGCTCAAGCAACAG 59.274 52.381 15.40 0.00 45.16 3.16
4812 5505 3.509967 TCAACATACCTTCTCGAGCTCAA 59.490 43.478 15.40 0.00 0.00 3.02
4864 5558 2.982488 CCTGGACAGCCCTAAAGGATAT 59.018 50.000 0.00 0.00 38.24 1.63
4866 5560 1.216990 CCTGGACAGCCCTAAAGGAT 58.783 55.000 0.00 0.00 38.24 3.24
4868 5562 0.253327 GACCTGGACAGCCCTAAAGG 59.747 60.000 0.00 0.00 39.47 3.11
4869 5563 0.253327 GGACCTGGACAGCCCTAAAG 59.747 60.000 0.00 0.00 35.38 1.85
4870 5564 1.550130 CGGACCTGGACAGCCCTAAA 61.550 60.000 0.00 0.00 35.38 1.85
4874 6530 2.670148 AATCGGACCTGGACAGCCC 61.670 63.158 0.00 0.00 0.00 5.19
4910 6566 5.503031 CGTCAATAAAGCCTGCTAATCAGTG 60.503 44.000 0.00 0.00 41.25 3.66
4920 6576 3.369756 TCGTTAAGCGTCAATAAAGCCTG 59.630 43.478 0.00 0.00 42.13 4.85
4923 6579 5.614760 TCTTTCGTTAAGCGTCAATAAAGC 58.385 37.500 0.00 0.00 42.13 3.51
4935 6591 7.521509 AACGGAGTAATCATCTTTCGTTAAG 57.478 36.000 0.00 0.00 45.00 1.85
4940 6596 6.241385 GTTGAAACGGAGTAATCATCTTTCG 58.759 40.000 0.00 0.00 45.00 3.46
4969 6625 2.050144 GGAGGAATCCAGGCTGTATCA 58.950 52.381 14.43 0.00 0.00 2.15
5049 6705 1.001706 CATCTGAAATGCATGAGCGGG 60.002 52.381 0.00 0.00 46.23 6.13
5074 6730 2.891580 GTCACAAGAGGCGGGATAGATA 59.108 50.000 0.00 0.00 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.