Multiple sequence alignment - TraesCS1A01G209000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G209000 chr1A 100.000 5104 0 0 1 5104 371083809 371088912 0.000000e+00 9426.0
1 TraesCS1A01G209000 chr1A 89.956 229 20 2 3182 3407 293712671 293712443 5.000000e-75 292.0
2 TraesCS1A01G209000 chr1B 94.687 3162 144 9 40 3183 400665168 400668323 0.000000e+00 4887.0
3 TraesCS1A01G209000 chr1B 95.208 1440 53 9 3672 5104 400668325 400669755 0.000000e+00 2263.0
4 TraesCS1A01G209000 chr1B 90.393 229 19 2 3182 3407 326768352 326768124 1.070000e-76 298.0
5 TraesCS1A01G209000 chr1B 96.970 33 1 0 1 33 25431449 25431481 7.140000e-04 56.5
6 TraesCS1A01G209000 chr1B 96.875 32 1 0 4 35 368411257 368411226 3.000000e-03 54.7
7 TraesCS1A01G209000 chr1D 93.106 3191 180 23 10 3181 298010501 298013670 0.000000e+00 4638.0
8 TraesCS1A01G209000 chr1D 94.371 1439 65 11 3672 5104 298013674 298015102 0.000000e+00 2194.0
9 TraesCS1A01G209000 chr1D 91.189 227 19 1 3182 3407 226450036 226449810 1.790000e-79 307.0
10 TraesCS1A01G209000 chr1D 91.579 95 8 0 3061 3155 298013687 298013781 1.150000e-26 132.0
11 TraesCS1A01G209000 chr1D 89.130 46 1 3 1 42 408436897 408436942 3.000000e-03 54.7
12 TraesCS1A01G209000 chr6B 100.000 188 0 0 3486 3673 214885845 214886032 1.050000e-91 348.0
13 TraesCS1A01G209000 chr6B 98.936 188 0 1 3488 3673 186592361 186592174 8.190000e-88 335.0
14 TraesCS1A01G209000 chr6B 85.065 308 32 8 3181 3476 29065465 29065160 8.310000e-78 302.0
15 TraesCS1A01G209000 chr6B 81.761 318 47 5 3177 3483 640314263 640314580 6.560000e-64 255.0
16 TraesCS1A01G209000 chr7D 88.079 302 22 8 3184 3473 64180763 64181062 3.780000e-91 346.0
17 TraesCS1A01G209000 chr7D 95.000 40 1 1 3 42 605166866 605166828 1.530000e-05 62.1
18 TraesCS1A01G209000 chr4B 96.651 209 6 1 3478 3685 482661628 482661836 3.780000e-91 346.0
19 TraesCS1A01G209000 chr4A 99.465 187 0 1 3486 3671 531096619 531096805 6.330000e-89 339.0
20 TraesCS1A01G209000 chr2B 99.462 186 0 1 3488 3672 198175579 198175394 2.280000e-88 337.0
21 TraesCS1A01G209000 chr2B 99.462 186 0 1 3487 3671 280479766 280479951 2.280000e-88 337.0
22 TraesCS1A01G209000 chr2B 98.404 188 1 1 3486 3671 283182514 283182327 3.810000e-86 329.0
23 TraesCS1A01G209000 chr7B 99.459 185 0 1 3488 3671 362049895 362049711 8.190000e-88 335.0
24 TraesCS1A01G209000 chr7B 85.016 307 35 5 3181 3476 559265053 559264747 8.310000e-78 302.0
25 TraesCS1A01G209000 chr5A 98.413 189 3 0 3486 3674 196212326 196212514 2.950000e-87 333.0
26 TraesCS1A01G209000 chr5A 84.839 310 35 9 3181 3479 444536923 444536615 8.310000e-78 302.0
27 TraesCS1A01G209000 chr2A 85.668 307 33 5 3181 3476 203459947 203459641 3.840000e-81 313.0
28 TraesCS1A01G209000 chr6D 90.667 225 20 1 3184 3407 363466630 363466406 1.070000e-76 298.0
29 TraesCS1A01G209000 chr7A 92.500 40 3 0 3 42 526126472 526126511 1.980000e-04 58.4
30 TraesCS1A01G209000 chr3B 100.000 31 0 0 3 33 79527526 79527556 1.980000e-04 58.4
31 TraesCS1A01G209000 chr3A 94.595 37 1 1 3 38 644917664 644917628 7.140000e-04 56.5
32 TraesCS1A01G209000 chr2D 100.000 30 0 0 3 32 579827072 579827043 7.140000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G209000 chr1A 371083809 371088912 5103 False 9426.000000 9426 100.000000 1 5104 1 chr1A.!!$F1 5103
1 TraesCS1A01G209000 chr1B 400665168 400669755 4587 False 3575.000000 4887 94.947500 40 5104 2 chr1B.!!$F2 5064
2 TraesCS1A01G209000 chr1D 298010501 298015102 4601 False 2321.333333 4638 93.018667 10 5104 3 chr1D.!!$F2 5094

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
887 926 0.251787 ATGGTTCCCTCTGCCAAACC 60.252 55.000 0.00 0.00 41.26 3.27 F
1444 1492 0.034767 TCAAGATGCCAGGGAGCTTG 60.035 55.000 28.28 28.28 37.79 4.01 F
1737 1785 0.678048 CCTTGTCAGCTAAGGTGGGC 60.678 60.000 5.69 0.00 39.85 5.36 F
2592 2640 0.326927 TTCATCAAACCCGGTCCCTC 59.673 55.000 0.00 0.00 0.00 4.30 F
3534 3583 2.238437 GCTTAGGCGACGCTTAGGC 61.238 63.158 25.71 25.71 36.29 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2181 2229 0.108520 TTCCCACGGTACTTGATCGC 60.109 55.0 0.00 0.0 33.78 4.58 R
2578 2626 0.322187 AATTCGAGGGACCGGGTTTG 60.322 55.0 6.32 0.0 0.00 2.93 R
3551 3600 0.040425 CGGGCATATTTGTAAGGCGC 60.040 55.0 0.00 0.0 0.00 6.53 R
3552 3601 0.040425 GCGGGCATATTTGTAAGGCG 60.040 55.0 0.00 0.0 0.00 5.52 R
4404 4459 0.535335 GCAGTGGTCAAGATCCGGTA 59.465 55.0 0.00 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.716094 TCGAGACATTTATTTTGAGACGGA 58.284 37.500 0.00 0.00 0.00 4.69
24 25 5.805486 TCGAGACATTTATTTTGAGACGGAG 59.195 40.000 0.00 0.00 0.00 4.63
25 26 5.005779 CGAGACATTTATTTTGAGACGGAGG 59.994 44.000 0.00 0.00 0.00 4.30
70 71 1.856265 GACCTTTTGCCGCCACAGAG 61.856 60.000 0.00 0.00 0.00 3.35
71 72 1.600636 CCTTTTGCCGCCACAGAGA 60.601 57.895 0.00 0.00 0.00 3.10
91 93 2.523168 TCGGGCTGGTCTGACACA 60.523 61.111 10.38 4.64 0.00 3.72
199 205 5.844516 CCCCCTACCTCTATCTATTTCACAA 59.155 44.000 0.00 0.00 0.00 3.33
312 323 4.498520 ATGCGCGAGGACTGACGG 62.499 66.667 12.10 0.00 0.00 4.79
404 415 1.950216 GGCATTTCTCGATCCCTTTCC 59.050 52.381 0.00 0.00 0.00 3.13
472 483 0.394899 GCTGGCTGTAGATTTGGGCT 60.395 55.000 0.00 0.00 0.00 5.19
555 566 1.660333 GCGTTTCTTCAAGAAGTGCGG 60.660 52.381 16.93 3.20 35.37 5.69
556 567 1.660333 CGTTTCTTCAAGAAGTGCGGC 60.660 52.381 9.44 0.00 35.37 6.53
557 568 1.604278 GTTTCTTCAAGAAGTGCGGCT 59.396 47.619 9.44 0.00 35.37 5.52
558 569 1.512926 TTCTTCAAGAAGTGCGGCTC 58.487 50.000 9.44 0.00 39.38 4.70
559 570 0.667487 TCTTCAAGAAGTGCGGCTCG 60.667 55.000 9.44 0.00 39.38 5.03
560 571 1.630244 CTTCAAGAAGTGCGGCTCGG 61.630 60.000 0.00 0.00 33.87 4.63
561 572 2.048222 CAAGAAGTGCGGCTCGGA 60.048 61.111 0.00 0.00 0.00 4.55
562 573 1.448540 CAAGAAGTGCGGCTCGGAT 60.449 57.895 0.00 0.00 0.00 4.18
563 574 1.021390 CAAGAAGTGCGGCTCGGATT 61.021 55.000 0.00 0.00 0.00 3.01
564 575 0.321653 AAGAAGTGCGGCTCGGATTT 60.322 50.000 0.00 0.00 29.54 2.17
565 576 1.021390 AGAAGTGCGGCTCGGATTTG 61.021 55.000 0.00 0.00 26.94 2.32
566 577 1.982073 GAAGTGCGGCTCGGATTTGG 61.982 60.000 0.00 0.00 26.94 3.28
567 578 2.746277 GTGCGGCTCGGATTTGGT 60.746 61.111 0.00 0.00 0.00 3.67
709 741 8.138074 TGTGATCCGAGAGTAGATTTAGATTTG 58.862 37.037 0.00 0.00 0.00 2.32
749 781 2.297701 TGTGCTGTTCCTCTTGAAACC 58.702 47.619 0.00 0.00 33.94 3.27
763 795 7.676893 TCCTCTTGAAACCTAGGTATTGAAGTA 59.323 37.037 16.67 10.03 0.00 2.24
801 833 6.465439 GGAAACTCTTCCTTCTTTTGGAAA 57.535 37.500 0.00 0.00 46.80 3.13
848 886 2.494870 GGATTTGATGCATAGGATGGGC 59.505 50.000 0.00 0.00 0.00 5.36
849 887 1.608055 TTTGATGCATAGGATGGGCG 58.392 50.000 0.00 0.00 0.00 6.13
850 888 0.473755 TTGATGCATAGGATGGGCGT 59.526 50.000 0.00 0.00 0.00 5.68
862 900 3.014623 GGATGGGCGTAGTTTTAAGCTT 58.985 45.455 3.48 3.48 35.06 3.74
877 916 6.987403 TTTAAGCTTGTAAAATGGTTCCCT 57.013 33.333 9.86 0.00 0.00 4.20
883 922 2.109128 TGTAAAATGGTTCCCTCTGCCA 59.891 45.455 0.00 0.00 36.64 4.92
887 926 0.251787 ATGGTTCCCTCTGCCAAACC 60.252 55.000 0.00 0.00 41.26 3.27
969 1017 1.133982 TCTCTCTTCTGATGCGAGCAC 59.866 52.381 0.00 0.00 0.00 4.40
1102 1150 2.364632 CACAACTGAAATGCCCGGATA 58.635 47.619 0.73 0.00 0.00 2.59
1110 1158 3.054728 TGAAATGCCCGGATAGAAACTCA 60.055 43.478 0.73 0.00 0.00 3.41
1200 1248 5.455899 GGAGAACCCAGAAGATAGCATCATT 60.456 44.000 0.00 0.00 34.14 2.57
1288 1336 6.438108 GGGGAGGAGGAAATTAGACTCTATAC 59.562 46.154 0.00 0.00 0.00 1.47
1320 1368 2.490115 TGCGTTTATGTCATTTGGGACC 59.510 45.455 0.00 0.00 36.97 4.46
1391 1439 1.577328 CGGAGCGGTTCATGCAAGTT 61.577 55.000 0.00 0.00 33.85 2.66
1444 1492 0.034767 TCAAGATGCCAGGGAGCTTG 60.035 55.000 28.28 28.28 37.79 4.01
1539 1587 7.331026 TGTTAAAGGATGATGTAAGAGACAGG 58.669 38.462 0.00 0.00 42.79 4.00
1558 1606 1.686455 TTCCCGGGGTTATCGCTCA 60.686 57.895 23.50 0.00 0.00 4.26
1589 1637 3.716006 CACGTGTCCTGCCGCAAG 61.716 66.667 7.58 0.00 0.00 4.01
1688 1736 3.495100 CCTGATAGGAGTAACCATGGCAC 60.495 52.174 13.04 10.48 37.67 5.01
1698 1746 9.223764 AGGAGTAACCATGGCACAATAGATTCA 62.224 40.741 13.04 0.00 42.04 2.57
1737 1785 0.678048 CCTTGTCAGCTAAGGTGGGC 60.678 60.000 5.69 0.00 39.85 5.36
1779 1827 4.083110 CCATCAGAAAGTGTTCATGGTGTC 60.083 45.833 0.00 0.00 36.09 3.67
1788 1836 1.135689 GTTCATGGTGTCGATGGCAAC 60.136 52.381 0.00 0.00 0.00 4.17
1962 2010 5.843673 TGAGTGGTATCTCAAGATCTGAC 57.156 43.478 0.00 0.00 40.82 3.51
1968 2016 5.485353 TGGTATCTCAAGATCTGACCAAACT 59.515 40.000 9.64 0.00 37.60 2.66
2060 2108 4.156556 GCATGCTGTTCTTAAACTGGATCA 59.843 41.667 11.37 0.00 41.30 2.92
2070 2118 5.357878 TCTTAAACTGGATCATGACAATGGC 59.642 40.000 0.00 0.00 34.30 4.40
2123 2171 5.463724 GTCCAGAAGAATCCATTTACGCTAG 59.536 44.000 0.00 0.00 0.00 3.42
2139 2187 1.668419 CTAGCACTTGGAAATCCGGG 58.332 55.000 0.00 0.00 39.43 5.73
2181 2229 4.164822 CACTTTCCATAGTGTTGGCAAG 57.835 45.455 0.00 2.03 43.21 4.01
2380 2428 2.600867 GCTGTTGATAGAGTTCAGCGTC 59.399 50.000 0.00 0.00 41.15 5.19
2578 2626 1.523758 AGTCCAAGTGCCGTTTCATC 58.476 50.000 0.00 0.00 0.00 2.92
2591 2639 0.774908 TTTCATCAAACCCGGTCCCT 59.225 50.000 0.00 0.00 0.00 4.20
2592 2640 0.326927 TTCATCAAACCCGGTCCCTC 59.673 55.000 0.00 0.00 0.00 4.30
2616 2664 5.106197 CGAATTGAAAACTGGATCATCACCA 60.106 40.000 0.00 0.00 35.96 4.17
2625 2673 3.181329 TGGATCATCACCAGGTACAGTT 58.819 45.455 0.00 0.00 33.22 3.16
2709 2757 5.241728 ACCGTTACTTAACCGTCTAAAGAGT 59.758 40.000 0.00 0.00 32.69 3.24
2889 2937 5.640357 TCGTGTTTGATTATTACCACCTGTC 59.360 40.000 0.00 0.00 0.00 3.51
3029 3078 5.578157 TCCCACTTAAAAGCTATATCCCC 57.422 43.478 0.00 0.00 0.00 4.81
3051 3100 5.291614 CCCGTTTTAGTTATACTTGCGCTAA 59.708 40.000 9.73 0.00 0.00 3.09
3067 3116 4.452795 TGCGCTAATTAACAGTTGCACTAA 59.547 37.500 9.73 0.00 0.00 2.24
3189 3238 7.396540 CATTTCAACTAAATGTAGGGCTCTT 57.603 36.000 0.00 0.00 46.31 2.85
3190 3239 7.830739 CATTTCAACTAAATGTAGGGCTCTTT 58.169 34.615 0.00 0.00 46.31 2.52
3191 3240 7.833285 TTTCAACTAAATGTAGGGCTCTTTT 57.167 32.000 0.00 0.00 0.00 2.27
3192 3241 6.817765 TCAACTAAATGTAGGGCTCTTTTG 57.182 37.500 0.00 0.00 0.00 2.44
3193 3242 6.539173 TCAACTAAATGTAGGGCTCTTTTGA 58.461 36.000 0.00 0.00 0.00 2.69
3194 3243 7.175104 TCAACTAAATGTAGGGCTCTTTTGAT 58.825 34.615 0.00 0.00 0.00 2.57
3195 3244 7.669722 TCAACTAAATGTAGGGCTCTTTTGATT 59.330 33.333 0.00 0.00 0.00 2.57
3196 3245 8.306761 CAACTAAATGTAGGGCTCTTTTGATTT 58.693 33.333 0.00 0.00 0.00 2.17
3197 3246 9.528489 AACTAAATGTAGGGCTCTTTTGATTTA 57.472 29.630 0.00 0.00 0.00 1.40
3198 3247 9.528489 ACTAAATGTAGGGCTCTTTTGATTTAA 57.472 29.630 0.00 0.00 0.00 1.52
3201 3250 6.834168 TGTAGGGCTCTTTTGATTTAAAGG 57.166 37.500 0.00 0.00 36.12 3.11
3202 3251 6.548321 TGTAGGGCTCTTTTGATTTAAAGGA 58.452 36.000 0.00 0.00 36.12 3.36
3203 3252 7.182060 TGTAGGGCTCTTTTGATTTAAAGGAT 58.818 34.615 0.00 0.00 34.38 3.24
3204 3253 7.673926 TGTAGGGCTCTTTTGATTTAAAGGATT 59.326 33.333 0.00 0.00 34.38 3.01
3205 3254 7.559335 AGGGCTCTTTTGATTTAAAGGATTT 57.441 32.000 0.00 0.00 43.42 2.17
3206 3255 7.977818 AGGGCTCTTTTGATTTAAAGGATTTT 58.022 30.769 0.00 0.00 40.09 1.82
3207 3256 8.097038 AGGGCTCTTTTGATTTAAAGGATTTTC 58.903 33.333 0.00 0.00 40.09 2.29
3208 3257 7.063426 GGGCTCTTTTGATTTAAAGGATTTTCG 59.937 37.037 0.00 0.00 40.09 3.46
3209 3258 7.598869 GGCTCTTTTGATTTAAAGGATTTTCGT 59.401 33.333 0.00 0.00 40.09 3.85
3210 3259 9.620660 GCTCTTTTGATTTAAAGGATTTTCGTA 57.379 29.630 0.00 0.00 40.09 3.43
3220 3269 9.738832 TTTAAAGGATTTTCGTAGAAACTTTGG 57.261 29.630 14.41 0.00 45.90 3.28
3221 3270 7.576861 AAAGGATTTTCGTAGAAACTTTGGA 57.423 32.000 8.04 0.00 45.90 3.53
3222 3271 6.803154 AGGATTTTCGTAGAAACTTTGGAG 57.197 37.500 0.00 0.00 45.90 3.86
3223 3272 5.705905 AGGATTTTCGTAGAAACTTTGGAGG 59.294 40.000 0.00 0.00 45.90 4.30
3224 3273 5.704053 GGATTTTCGTAGAAACTTTGGAGGA 59.296 40.000 0.00 0.00 45.90 3.71
3225 3274 6.374613 GGATTTTCGTAGAAACTTTGGAGGAT 59.625 38.462 0.00 0.00 45.90 3.24
3226 3275 7.094334 GGATTTTCGTAGAAACTTTGGAGGATT 60.094 37.037 0.00 0.00 45.90 3.01
3227 3276 8.857694 ATTTTCGTAGAAACTTTGGAGGATTA 57.142 30.769 0.00 0.00 45.90 1.75
3228 3277 7.900782 TTTCGTAGAAACTTTGGAGGATTAG 57.099 36.000 0.00 0.00 45.90 1.73
3229 3278 6.845758 TCGTAGAAACTTTGGAGGATTAGA 57.154 37.500 0.00 0.00 0.00 2.10
3230 3279 7.235935 TCGTAGAAACTTTGGAGGATTAGAA 57.764 36.000 0.00 0.00 0.00 2.10
3231 3280 7.848128 TCGTAGAAACTTTGGAGGATTAGAAT 58.152 34.615 0.00 0.00 0.00 2.40
3232 3281 7.980099 TCGTAGAAACTTTGGAGGATTAGAATC 59.020 37.037 0.00 0.00 34.66 2.52
3280 3329 9.057089 AGTTATTTGATTCGTAGGATTGAATCC 57.943 33.333 16.35 16.35 46.29 3.01
3309 3358 7.853377 GGAGTTTTTCCTAACGATTTCTTTG 57.147 36.000 0.00 0.00 43.16 2.77
3310 3359 7.423199 GGAGTTTTTCCTAACGATTTCTTTGT 58.577 34.615 0.00 0.00 43.16 2.83
3311 3360 8.562052 GGAGTTTTTCCTAACGATTTCTTTGTA 58.438 33.333 0.00 0.00 43.16 2.41
3312 3361 9.378597 GAGTTTTTCCTAACGATTTCTTTGTAC 57.621 33.333 0.00 0.00 33.26 2.90
3313 3362 9.117183 AGTTTTTCCTAACGATTTCTTTGTACT 57.883 29.630 0.00 0.00 33.26 2.73
3316 3365 9.768662 TTTTCCTAACGATTTCTTTGTACTACT 57.231 29.630 0.00 0.00 0.00 2.57
3317 3366 9.768662 TTTCCTAACGATTTCTTTGTACTACTT 57.231 29.630 0.00 0.00 0.00 2.24
3318 3367 8.976986 TCCTAACGATTTCTTTGTACTACTTC 57.023 34.615 0.00 0.00 0.00 3.01
3319 3368 8.031277 TCCTAACGATTTCTTTGTACTACTTCC 58.969 37.037 0.00 0.00 0.00 3.46
3320 3369 7.277319 CCTAACGATTTCTTTGTACTACTTCCC 59.723 40.741 0.00 0.00 0.00 3.97
3321 3370 6.105397 ACGATTTCTTTGTACTACTTCCCA 57.895 37.500 0.00 0.00 0.00 4.37
3322 3371 6.708285 ACGATTTCTTTGTACTACTTCCCAT 58.292 36.000 0.00 0.00 0.00 4.00
3323 3372 7.844009 ACGATTTCTTTGTACTACTTCCCATA 58.156 34.615 0.00 0.00 0.00 2.74
3324 3373 7.980099 ACGATTTCTTTGTACTACTTCCCATAG 59.020 37.037 0.00 0.00 0.00 2.23
3325 3374 7.438459 CGATTTCTTTGTACTACTTCCCATAGG 59.562 40.741 0.00 0.00 0.00 2.57
3326 3375 7.801893 TTTCTTTGTACTACTTCCCATAGGA 57.198 36.000 0.00 0.00 41.88 2.94
3327 3376 7.989947 TTCTTTGTACTACTTCCCATAGGAT 57.010 36.000 0.00 0.00 43.54 3.24
3328 3377 7.989947 TCTTTGTACTACTTCCCATAGGATT 57.010 36.000 0.00 0.00 43.54 3.01
3329 3378 8.388656 TCTTTGTACTACTTCCCATAGGATTT 57.611 34.615 0.00 0.00 43.54 2.17
3330 3379 8.483758 TCTTTGTACTACTTCCCATAGGATTTC 58.516 37.037 0.00 0.00 43.54 2.17
3331 3380 7.989947 TTGTACTACTTCCCATAGGATTTCT 57.010 36.000 0.00 0.00 43.54 2.52
3332 3381 9.496710 TTTGTACTACTTCCCATAGGATTTCTA 57.503 33.333 0.00 0.00 43.54 2.10
3333 3382 8.707796 TGTACTACTTCCCATAGGATTTCTAG 57.292 38.462 0.00 0.00 43.54 2.43
3334 3383 6.673839 ACTACTTCCCATAGGATTTCTAGC 57.326 41.667 0.00 0.00 43.54 3.42
3335 3384 6.143915 ACTACTTCCCATAGGATTTCTAGCA 58.856 40.000 0.00 0.00 43.54 3.49
3336 3385 6.789959 ACTACTTCCCATAGGATTTCTAGCAT 59.210 38.462 0.00 0.00 43.54 3.79
3337 3386 6.120507 ACTTCCCATAGGATTTCTAGCATC 57.879 41.667 0.00 0.00 43.54 3.91
3338 3387 5.013599 ACTTCCCATAGGATTTCTAGCATCC 59.986 44.000 11.24 11.24 43.54 3.51
3339 3388 4.502415 TCCCATAGGATTTCTAGCATCCA 58.498 43.478 18.29 8.52 42.63 3.41
3340 3389 4.287067 TCCCATAGGATTTCTAGCATCCAC 59.713 45.833 18.29 0.00 42.63 4.02
3341 3390 4.288105 CCCATAGGATTTCTAGCATCCACT 59.712 45.833 18.29 5.94 42.63 4.00
3342 3391 5.486526 CCATAGGATTTCTAGCATCCACTC 58.513 45.833 18.29 0.00 42.63 3.51
3343 3392 5.012458 CCATAGGATTTCTAGCATCCACTCA 59.988 44.000 18.29 5.66 42.63 3.41
3344 3393 6.464892 CCATAGGATTTCTAGCATCCACTCAA 60.465 42.308 18.29 4.13 42.63 3.02
3345 3394 5.441718 AGGATTTCTAGCATCCACTCAAA 57.558 39.130 18.29 0.00 42.63 2.69
3346 3395 5.189180 AGGATTTCTAGCATCCACTCAAAC 58.811 41.667 18.29 0.00 42.63 2.93
3347 3396 4.336713 GGATTTCTAGCATCCACTCAAACC 59.663 45.833 13.42 0.00 40.21 3.27
3348 3397 4.640771 TTTCTAGCATCCACTCAAACCT 57.359 40.909 0.00 0.00 0.00 3.50
3349 3398 3.895232 TCTAGCATCCACTCAAACCTC 57.105 47.619 0.00 0.00 0.00 3.85
3350 3399 3.445008 TCTAGCATCCACTCAAACCTCT 58.555 45.455 0.00 0.00 0.00 3.69
3351 3400 3.840666 TCTAGCATCCACTCAAACCTCTT 59.159 43.478 0.00 0.00 0.00 2.85
3352 3401 3.064900 AGCATCCACTCAAACCTCTTC 57.935 47.619 0.00 0.00 0.00 2.87
3353 3402 2.373169 AGCATCCACTCAAACCTCTTCA 59.627 45.455 0.00 0.00 0.00 3.02
3354 3403 3.149196 GCATCCACTCAAACCTCTTCAA 58.851 45.455 0.00 0.00 0.00 2.69
3355 3404 3.569701 GCATCCACTCAAACCTCTTCAAA 59.430 43.478 0.00 0.00 0.00 2.69
3356 3405 4.037923 GCATCCACTCAAACCTCTTCAAAA 59.962 41.667 0.00 0.00 0.00 2.44
3357 3406 5.766222 CATCCACTCAAACCTCTTCAAAAG 58.234 41.667 0.00 0.00 0.00 2.27
3358 3407 5.110814 TCCACTCAAACCTCTTCAAAAGA 57.889 39.130 0.00 0.00 35.87 2.52
3359 3408 5.505780 TCCACTCAAACCTCTTCAAAAGAA 58.494 37.500 0.00 0.00 37.02 2.52
3360 3409 6.129179 TCCACTCAAACCTCTTCAAAAGAAT 58.871 36.000 0.00 0.00 37.02 2.40
3361 3410 6.263168 TCCACTCAAACCTCTTCAAAAGAATC 59.737 38.462 0.00 0.00 37.02 2.52
3362 3411 6.442112 CACTCAAACCTCTTCAAAAGAATCC 58.558 40.000 0.00 0.00 37.02 3.01
3363 3412 6.264067 CACTCAAACCTCTTCAAAAGAATCCT 59.736 38.462 0.00 0.00 37.02 3.24
3364 3413 6.836007 ACTCAAACCTCTTCAAAAGAATCCTT 59.164 34.615 0.00 0.00 37.02 3.36
3365 3414 7.343057 ACTCAAACCTCTTCAAAAGAATCCTTT 59.657 33.333 0.00 0.00 44.00 3.11
3366 3415 7.491682 TCAAACCTCTTCAAAAGAATCCTTTG 58.508 34.615 0.00 0.00 41.46 2.77
3367 3416 7.124147 TCAAACCTCTTCAAAAGAATCCTTTGT 59.876 33.333 4.48 0.00 41.46 2.83
3368 3417 7.423844 AACCTCTTCAAAAGAATCCTTTGTT 57.576 32.000 4.48 0.00 41.46 2.83
3369 3418 7.423844 ACCTCTTCAAAAGAATCCTTTGTTT 57.576 32.000 4.48 0.00 41.46 2.83
3370 3419 7.851228 ACCTCTTCAAAAGAATCCTTTGTTTT 58.149 30.769 4.48 0.00 41.46 2.43
3371 3420 8.321353 ACCTCTTCAAAAGAATCCTTTGTTTTT 58.679 29.630 4.48 0.00 41.46 1.94
3372 3421 8.820933 CCTCTTCAAAAGAATCCTTTGTTTTTC 58.179 33.333 4.48 0.00 41.46 2.29
3373 3422 8.716646 TCTTCAAAAGAATCCTTTGTTTTTCC 57.283 30.769 4.48 0.00 41.46 3.13
3374 3423 8.539544 TCTTCAAAAGAATCCTTTGTTTTTCCT 58.460 29.630 4.48 0.00 41.46 3.36
3375 3424 9.816354 CTTCAAAAGAATCCTTTGTTTTTCCTA 57.184 29.630 4.48 0.00 41.46 2.94
3377 3426 9.762933 TCAAAAGAATCCTTTGTTTTTCCTATG 57.237 29.630 4.48 0.00 41.46 2.23
3378 3427 9.762933 CAAAAGAATCCTTTGTTTTTCCTATGA 57.237 29.630 0.00 0.00 41.46 2.15
3380 3429 9.933723 AAAGAATCCTTTGTTTTTCCTATGATG 57.066 29.630 0.00 0.00 40.83 3.07
3381 3430 7.550712 AGAATCCTTTGTTTTTCCTATGATGC 58.449 34.615 0.00 0.00 0.00 3.91
3382 3431 6.855763 ATCCTTTGTTTTTCCTATGATGCA 57.144 33.333 0.00 0.00 0.00 3.96
3383 3432 6.662865 TCCTTTGTTTTTCCTATGATGCAA 57.337 33.333 0.00 0.00 0.00 4.08
3384 3433 7.243604 TCCTTTGTTTTTCCTATGATGCAAT 57.756 32.000 0.00 0.00 0.00 3.56
3385 3434 7.322664 TCCTTTGTTTTTCCTATGATGCAATC 58.677 34.615 0.00 0.00 45.83 2.67
3401 3450 7.193377 GATGCAATCAAACAAACAAAATCCT 57.807 32.000 0.00 0.00 44.70 3.24
3402 3451 6.360844 TGCAATCAAACAAACAAAATCCTG 57.639 33.333 0.00 0.00 0.00 3.86
3403 3452 5.879223 TGCAATCAAACAAACAAAATCCTGT 59.121 32.000 0.00 0.00 0.00 4.00
3404 3453 7.044181 TGCAATCAAACAAACAAAATCCTGTA 58.956 30.769 0.00 0.00 0.00 2.74
3405 3454 7.224362 TGCAATCAAACAAACAAAATCCTGTAG 59.776 33.333 0.00 0.00 0.00 2.74
3406 3455 7.307337 GCAATCAAACAAACAAAATCCTGTAGG 60.307 37.037 0.00 0.00 0.00 3.18
3407 3456 5.596845 TCAAACAAACAAAATCCTGTAGGC 58.403 37.500 0.00 0.00 34.44 3.93
3408 3457 4.600692 AACAAACAAAATCCTGTAGGCC 57.399 40.909 0.00 0.00 34.44 5.19
3409 3458 2.897326 ACAAACAAAATCCTGTAGGCCC 59.103 45.455 0.00 0.00 34.44 5.80
3410 3459 3.165071 CAAACAAAATCCTGTAGGCCCT 58.835 45.455 0.00 0.00 34.44 5.19
3411 3460 4.202631 ACAAACAAAATCCTGTAGGCCCTA 60.203 41.667 0.00 0.00 34.44 3.53
3412 3461 3.933861 ACAAAATCCTGTAGGCCCTAG 57.066 47.619 0.00 0.00 34.44 3.02
3413 3462 3.190439 ACAAAATCCTGTAGGCCCTAGT 58.810 45.455 0.00 0.00 34.44 2.57
3414 3463 4.368067 ACAAAATCCTGTAGGCCCTAGTA 58.632 43.478 0.00 0.00 34.44 1.82
3415 3464 4.975794 ACAAAATCCTGTAGGCCCTAGTAT 59.024 41.667 0.00 0.00 34.44 2.12
3416 3465 5.432060 ACAAAATCCTGTAGGCCCTAGTATT 59.568 40.000 0.00 0.00 34.44 1.89
3417 3466 6.069029 ACAAAATCCTGTAGGCCCTAGTATTT 60.069 38.462 0.00 0.00 34.44 1.40
3418 3467 5.827326 AATCCTGTAGGCCCTAGTATTTC 57.173 43.478 0.00 0.00 34.44 2.17
3419 3468 4.274794 TCCTGTAGGCCCTAGTATTTCA 57.725 45.455 0.00 0.00 34.44 2.69
3420 3469 4.627015 TCCTGTAGGCCCTAGTATTTCAA 58.373 43.478 0.00 0.00 34.44 2.69
3421 3470 5.224441 TCCTGTAGGCCCTAGTATTTCAAT 58.776 41.667 0.00 0.00 34.44 2.57
3422 3471 5.670361 TCCTGTAGGCCCTAGTATTTCAATT 59.330 40.000 0.00 0.00 34.44 2.32
3423 3472 5.998363 CCTGTAGGCCCTAGTATTTCAATTC 59.002 44.000 0.00 0.00 0.00 2.17
3424 3473 6.183361 CCTGTAGGCCCTAGTATTTCAATTCT 60.183 42.308 0.00 0.00 0.00 2.40
3425 3474 7.016268 CCTGTAGGCCCTAGTATTTCAATTCTA 59.984 40.741 0.00 0.00 0.00 2.10
3426 3475 8.506196 TGTAGGCCCTAGTATTTCAATTCTAT 57.494 34.615 0.00 0.00 0.00 1.98
3427 3476 8.375506 TGTAGGCCCTAGTATTTCAATTCTATG 58.624 37.037 0.00 0.00 0.00 2.23
3428 3477 7.394144 AGGCCCTAGTATTTCAATTCTATGT 57.606 36.000 0.00 0.00 0.00 2.29
3429 3478 7.816411 AGGCCCTAGTATTTCAATTCTATGTT 58.184 34.615 0.00 0.00 0.00 2.71
3430 3479 8.282256 AGGCCCTAGTATTTCAATTCTATGTTT 58.718 33.333 0.00 0.00 0.00 2.83
3431 3480 8.914011 GGCCCTAGTATTTCAATTCTATGTTTT 58.086 33.333 0.00 0.00 0.00 2.43
3442 3491 9.540538 TTCAATTCTATGTTTTTCCTATTCCCA 57.459 29.630 0.00 0.00 0.00 4.37
3443 3492 8.966868 TCAATTCTATGTTTTTCCTATTCCCAC 58.033 33.333 0.00 0.00 0.00 4.61
3444 3493 6.995511 TTCTATGTTTTTCCTATTCCCACG 57.004 37.500 0.00 0.00 0.00 4.94
3445 3494 4.879545 TCTATGTTTTTCCTATTCCCACGC 59.120 41.667 0.00 0.00 0.00 5.34
3446 3495 3.149005 TGTTTTTCCTATTCCCACGCT 57.851 42.857 0.00 0.00 0.00 5.07
3447 3496 3.492337 TGTTTTTCCTATTCCCACGCTT 58.508 40.909 0.00 0.00 0.00 4.68
3448 3497 3.892588 TGTTTTTCCTATTCCCACGCTTT 59.107 39.130 0.00 0.00 0.00 3.51
3449 3498 4.342665 TGTTTTTCCTATTCCCACGCTTTT 59.657 37.500 0.00 0.00 0.00 2.27
3450 3499 5.535406 TGTTTTTCCTATTCCCACGCTTTTA 59.465 36.000 0.00 0.00 0.00 1.52
3451 3500 5.890424 TTTTCCTATTCCCACGCTTTTAG 57.110 39.130 0.00 0.00 0.00 1.85
3452 3501 4.829872 TTCCTATTCCCACGCTTTTAGA 57.170 40.909 0.00 0.00 0.00 2.10
3453 3502 4.829872 TCCTATTCCCACGCTTTTAGAA 57.170 40.909 0.00 0.00 0.00 2.10
3454 3503 5.367945 TCCTATTCCCACGCTTTTAGAAT 57.632 39.130 0.00 0.00 0.00 2.40
3455 3504 5.365619 TCCTATTCCCACGCTTTTAGAATC 58.634 41.667 0.00 0.00 0.00 2.52
3456 3505 4.515567 CCTATTCCCACGCTTTTAGAATCC 59.484 45.833 0.00 0.00 0.00 3.01
3457 3506 3.713826 TTCCCACGCTTTTAGAATCCT 57.286 42.857 0.00 0.00 0.00 3.24
3458 3507 4.829872 TTCCCACGCTTTTAGAATCCTA 57.170 40.909 0.00 0.00 0.00 2.94
3459 3508 5.367945 TTCCCACGCTTTTAGAATCCTAT 57.632 39.130 0.00 0.00 0.00 2.57
3460 3509 4.703897 TCCCACGCTTTTAGAATCCTATG 58.296 43.478 0.00 0.00 0.00 2.23
3461 3510 4.407621 TCCCACGCTTTTAGAATCCTATGA 59.592 41.667 0.00 0.00 0.00 2.15
3462 3511 5.104693 TCCCACGCTTTTAGAATCCTATGAA 60.105 40.000 0.00 0.00 0.00 2.57
3463 3512 5.765182 CCCACGCTTTTAGAATCCTATGAAT 59.235 40.000 0.00 0.00 0.00 2.57
3464 3513 6.073003 CCCACGCTTTTAGAATCCTATGAATC 60.073 42.308 0.00 0.00 0.00 2.52
3465 3514 6.483307 CCACGCTTTTAGAATCCTATGAATCA 59.517 38.462 0.00 0.00 0.00 2.57
3466 3515 7.012327 CCACGCTTTTAGAATCCTATGAATCAA 59.988 37.037 0.00 0.00 0.00 2.57
3467 3516 8.397906 CACGCTTTTAGAATCCTATGAATCAAA 58.602 33.333 0.00 0.00 0.00 2.69
3468 3517 8.616076 ACGCTTTTAGAATCCTATGAATCAAAG 58.384 33.333 0.00 0.00 0.00 2.77
3469 3518 8.830580 CGCTTTTAGAATCCTATGAATCAAAGA 58.169 33.333 0.00 0.00 0.00 2.52
3472 3521 8.682936 TTTAGAATCCTATGAATCAAAGAGGC 57.317 34.615 4.80 0.00 0.00 4.70
3473 3522 5.303971 AGAATCCTATGAATCAAAGAGGCG 58.696 41.667 4.80 0.00 0.00 5.52
3474 3523 2.838736 TCCTATGAATCAAAGAGGCGC 58.161 47.619 0.00 0.00 0.00 6.53
3475 3524 2.435805 TCCTATGAATCAAAGAGGCGCT 59.564 45.455 7.64 0.00 0.00 5.92
3476 3525 3.641436 TCCTATGAATCAAAGAGGCGCTA 59.359 43.478 7.64 0.00 0.00 4.26
3477 3526 3.993081 CCTATGAATCAAAGAGGCGCTAG 59.007 47.826 7.64 0.00 0.00 3.42
3478 3527 3.550437 ATGAATCAAAGAGGCGCTAGT 57.450 42.857 7.64 0.00 0.00 2.57
3479 3528 4.672587 ATGAATCAAAGAGGCGCTAGTA 57.327 40.909 7.64 0.00 0.00 1.82
3480 3529 4.672587 TGAATCAAAGAGGCGCTAGTAT 57.327 40.909 7.64 0.00 0.00 2.12
3481 3530 5.023533 TGAATCAAAGAGGCGCTAGTATT 57.976 39.130 7.64 0.00 0.00 1.89
3482 3531 5.428253 TGAATCAAAGAGGCGCTAGTATTT 58.572 37.500 7.64 0.00 0.00 1.40
3483 3532 5.523916 TGAATCAAAGAGGCGCTAGTATTTC 59.476 40.000 7.64 2.70 0.00 2.17
3484 3533 4.465632 TCAAAGAGGCGCTAGTATTTCA 57.534 40.909 7.64 0.00 0.00 2.69
3485 3534 4.827692 TCAAAGAGGCGCTAGTATTTCAA 58.172 39.130 7.64 0.00 0.00 2.69
3486 3535 4.630069 TCAAAGAGGCGCTAGTATTTCAAC 59.370 41.667 7.64 0.00 0.00 3.18
3487 3536 3.180891 AGAGGCGCTAGTATTTCAACC 57.819 47.619 7.64 0.00 0.00 3.77
3488 3537 2.500098 AGAGGCGCTAGTATTTCAACCA 59.500 45.455 7.64 0.00 0.00 3.67
3489 3538 3.134804 AGAGGCGCTAGTATTTCAACCAT 59.865 43.478 7.64 0.00 0.00 3.55
3490 3539 3.877508 GAGGCGCTAGTATTTCAACCATT 59.122 43.478 7.64 0.00 0.00 3.16
3491 3540 3.627577 AGGCGCTAGTATTTCAACCATTG 59.372 43.478 7.64 0.00 0.00 2.82
3492 3541 3.377172 GGCGCTAGTATTTCAACCATTGT 59.623 43.478 7.64 0.00 0.00 2.71
3493 3542 4.142469 GGCGCTAGTATTTCAACCATTGTT 60.142 41.667 7.64 0.00 34.14 2.83
3494 3543 5.399013 GCGCTAGTATTTCAACCATTGTTT 58.601 37.500 0.00 0.00 30.42 2.83
3495 3544 5.861787 GCGCTAGTATTTCAACCATTGTTTT 59.138 36.000 0.00 0.00 30.42 2.43
3496 3545 6.364976 GCGCTAGTATTTCAACCATTGTTTTT 59.635 34.615 0.00 0.00 30.42 1.94
3497 3546 7.539366 GCGCTAGTATTTCAACCATTGTTTTTA 59.461 33.333 0.00 0.00 30.42 1.52
3498 3547 9.400638 CGCTAGTATTTCAACCATTGTTTTTAA 57.599 29.630 0.00 0.00 30.42 1.52
3501 3550 8.601845 AGTATTTCAACCATTGTTTTTAAGGC 57.398 30.769 0.00 0.00 30.42 4.35
3502 3551 5.975410 TTTCAACCATTGTTTTTAAGGCG 57.025 34.783 0.00 0.00 30.42 5.52
3503 3552 4.657436 TCAACCATTGTTTTTAAGGCGT 57.343 36.364 0.00 0.00 30.42 5.68
3504 3553 4.612943 TCAACCATTGTTTTTAAGGCGTC 58.387 39.130 0.00 0.00 30.42 5.19
3505 3554 3.653539 ACCATTGTTTTTAAGGCGTCC 57.346 42.857 0.00 0.00 0.00 4.79
3506 3555 2.297880 ACCATTGTTTTTAAGGCGTCCC 59.702 45.455 0.00 0.00 0.00 4.46
3507 3556 2.591133 CATTGTTTTTAAGGCGTCCCG 58.409 47.619 0.00 0.00 35.76 5.14
3519 3568 4.699522 GTCCCGCCTTGGACGCTT 62.700 66.667 0.00 0.00 44.98 4.68
3520 3569 2.998480 TCCCGCCTTGGACGCTTA 60.998 61.111 0.00 0.00 42.00 3.09
3521 3570 2.511600 CCCGCCTTGGACGCTTAG 60.512 66.667 0.00 0.00 42.00 2.18
3522 3571 2.511600 CCGCCTTGGACGCTTAGG 60.512 66.667 0.00 0.00 42.00 2.69
3533 3582 4.014065 GCTTAGGCGACGCTTAGG 57.986 61.111 20.77 17.82 0.00 2.69
3534 3583 2.238437 GCTTAGGCGACGCTTAGGC 61.238 63.158 25.71 25.71 36.29 3.93
3562 3611 2.034999 CCCCCAGCGCCTTACAAA 59.965 61.111 2.29 0.00 0.00 2.83
3563 3612 1.379843 CCCCCAGCGCCTTACAAAT 60.380 57.895 2.29 0.00 0.00 2.32
3564 3613 0.106918 CCCCCAGCGCCTTACAAATA 60.107 55.000 2.29 0.00 0.00 1.40
3565 3614 1.478654 CCCCCAGCGCCTTACAAATAT 60.479 52.381 2.29 0.00 0.00 1.28
3566 3615 1.608590 CCCCAGCGCCTTACAAATATG 59.391 52.381 2.29 0.00 0.00 1.78
3567 3616 1.001378 CCCAGCGCCTTACAAATATGC 60.001 52.381 2.29 0.00 0.00 3.14
3568 3617 1.001378 CCAGCGCCTTACAAATATGCC 60.001 52.381 2.29 0.00 0.00 4.40
3569 3618 1.001378 CAGCGCCTTACAAATATGCCC 60.001 52.381 2.29 0.00 0.00 5.36
3570 3619 0.040425 GCGCCTTACAAATATGCCCG 60.040 55.000 0.00 0.00 0.00 6.13
3571 3620 0.040425 CGCCTTACAAATATGCCCGC 60.040 55.000 0.00 0.00 0.00 6.13
3572 3621 0.313987 GCCTTACAAATATGCCCGCC 59.686 55.000 0.00 0.00 0.00 6.13
3573 3622 1.981256 CCTTACAAATATGCCCGCCT 58.019 50.000 0.00 0.00 0.00 5.52
3574 3623 2.306847 CCTTACAAATATGCCCGCCTT 58.693 47.619 0.00 0.00 0.00 4.35
3575 3624 3.482436 CCTTACAAATATGCCCGCCTTA 58.518 45.455 0.00 0.00 0.00 2.69
3576 3625 3.502211 CCTTACAAATATGCCCGCCTTAG 59.498 47.826 0.00 0.00 0.00 2.18
3577 3626 1.981256 ACAAATATGCCCGCCTTAGG 58.019 50.000 0.00 0.00 0.00 2.69
3647 3696 4.176752 CCCCCAGCGCCTTAGGTC 62.177 72.222 2.29 0.00 0.00 3.85
3648 3697 4.530857 CCCCAGCGCCTTAGGTCG 62.531 72.222 2.29 9.97 0.00 4.79
3651 3700 4.148825 CAGCGCCTTAGGTCGCCT 62.149 66.667 26.94 16.35 44.56 5.52
3652 3701 3.391382 AGCGCCTTAGGTCGCCTT 61.391 61.111 26.94 13.59 44.56 4.35
3653 3702 2.056223 AGCGCCTTAGGTCGCCTTA 61.056 57.895 26.94 0.00 44.56 2.69
3654 3703 1.881709 GCGCCTTAGGTCGCCTTAC 60.882 63.158 22.66 2.55 40.38 2.34
3655 3704 1.227176 CGCCTTAGGTCGCCTTACC 60.227 63.158 0.00 0.00 40.06 2.85
3656 3705 1.227176 GCCTTAGGTCGCCTTACCG 60.227 63.158 0.00 0.00 44.77 4.02
3657 3706 1.227176 CCTTAGGTCGCCTTACCGC 60.227 63.158 3.71 0.00 44.77 5.68
3658 3707 1.227176 CTTAGGTCGCCTTACCGCC 60.227 63.158 3.71 0.00 44.77 6.13
3659 3708 1.673808 CTTAGGTCGCCTTACCGCCT 61.674 60.000 3.71 0.00 44.77 5.52
3660 3709 1.259840 TTAGGTCGCCTTACCGCCTT 61.260 55.000 3.71 0.00 44.77 4.35
3661 3710 0.395586 TAGGTCGCCTTACCGCCTTA 60.396 55.000 3.71 0.00 44.77 2.69
3662 3711 1.218854 GGTCGCCTTACCGCCTTAA 59.781 57.895 0.00 0.00 0.00 1.85
3663 3712 0.391528 GGTCGCCTTACCGCCTTAAA 60.392 55.000 0.00 0.00 0.00 1.52
3664 3713 1.441738 GTCGCCTTACCGCCTTAAAA 58.558 50.000 0.00 0.00 0.00 1.52
3665 3714 1.805943 GTCGCCTTACCGCCTTAAAAA 59.194 47.619 0.00 0.00 0.00 1.94
3666 3715 1.805943 TCGCCTTACCGCCTTAAAAAC 59.194 47.619 0.00 0.00 0.00 2.43
3667 3716 1.808343 CGCCTTACCGCCTTAAAAACT 59.192 47.619 0.00 0.00 0.00 2.66
3668 3717 3.002102 CGCCTTACCGCCTTAAAAACTA 58.998 45.455 0.00 0.00 0.00 2.24
3669 3718 3.624410 CGCCTTACCGCCTTAAAAACTAT 59.376 43.478 0.00 0.00 0.00 2.12
3670 3719 4.495184 CGCCTTACCGCCTTAAAAACTATG 60.495 45.833 0.00 0.00 0.00 2.23
3709 3759 8.905103 TGCACTAGTTAAAACTTCTTTTTGAC 57.095 30.769 0.00 0.00 41.72 3.18
3710 3760 8.516234 TGCACTAGTTAAAACTTCTTTTTGACA 58.484 29.630 0.00 0.00 43.11 3.58
3711 3761 9.010366 GCACTAGTTAAAACTTCTTTTTGACAG 57.990 33.333 0.00 5.38 43.11 3.51
3724 3774 7.421530 TCTTTTTGACAGATGCACTAGTTAC 57.578 36.000 0.00 0.00 0.00 2.50
3833 3883 3.055819 TGAAAGTCGATGGGAAAGGAGAG 60.056 47.826 0.00 0.00 0.00 3.20
3921 3971 3.134623 TCACTGTTCTGAAGCTTCTCCAA 59.865 43.478 26.09 13.37 0.00 3.53
4019 4069 6.611642 AGCAGTTAATAGGATCAGTAACAGGA 59.388 38.462 6.28 0.00 0.00 3.86
4070 4120 2.235891 GGAAAAACTCCGGTGGTCAAT 58.764 47.619 8.63 0.00 33.37 2.57
4079 4129 2.438434 GTGGTCAATGGCCCTCCG 60.438 66.667 0.00 0.00 34.14 4.63
4134 4184 3.080319 TGCCATCATGTTCATCGTTCAA 58.920 40.909 0.00 0.00 0.00 2.69
4165 4215 6.073602 GGGTTGATCATGCTCTTTTTGTTTTC 60.074 38.462 0.00 0.00 0.00 2.29
4176 4226 9.868277 TGCTCTTTTTGTTTTCTAAGATCAAAA 57.132 25.926 0.00 0.00 36.60 2.44
4213 4268 1.995376 TTTCCTTTTCACAGGAGGGC 58.005 50.000 0.00 0.00 44.18 5.19
4214 4269 1.149101 TTCCTTTTCACAGGAGGGCT 58.851 50.000 0.00 0.00 44.18 5.19
4217 4272 1.630878 CCTTTTCACAGGAGGGCTAGT 59.369 52.381 0.00 0.00 35.71 2.57
4251 4306 8.059429 CCATAAGGATAGAAGCATCATGCAGC 62.059 46.154 13.38 2.74 41.43 5.25
4404 4459 3.181471 CCAGGCGTCAAGAAGATAGATGT 60.181 47.826 0.00 0.00 0.00 3.06
4624 4680 0.371989 TATCATGACCAAAACGCGCG 59.628 50.000 30.96 30.96 0.00 6.86
4657 4713 9.599322 GTTTCAGTGTTCAGTTTCTGTATATTG 57.401 33.333 0.00 0.00 32.61 1.90
4740 4796 6.569127 TCCTTTTTACTGCACCATATAGGA 57.431 37.500 0.00 0.00 41.22 2.94
4808 4864 3.866582 GTGCTAGCCCGCCATCCT 61.867 66.667 13.29 0.00 0.00 3.24
4809 4865 2.123033 TGCTAGCCCGCCATCCTA 60.123 61.111 13.29 0.00 0.00 2.94
4810 4866 2.210013 TGCTAGCCCGCCATCCTAG 61.210 63.158 13.29 0.00 33.41 3.02
4838 4894 1.067295 TGCAGACAATCTGGACCCTT 58.933 50.000 7.89 0.00 44.43 3.95
4839 4895 1.425066 TGCAGACAATCTGGACCCTTT 59.575 47.619 7.89 0.00 44.43 3.11
4843 4899 4.651778 CAGACAATCTGGACCCTTTGTAA 58.348 43.478 0.00 0.00 40.71 2.41
4866 4922 9.282247 GTAAATATGCTCAAAGTTGTCAAGATG 57.718 33.333 0.00 0.00 0.00 2.90
4868 4924 8.565896 AATATGCTCAAAGTTGTCAAGATGTA 57.434 30.769 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.005779 CCTCCGTCTCAAAATAAATGTCTCG 59.994 44.000 0.00 0.00 0.00 4.04
2 3 5.294552 CCCTCCGTCTCAAAATAAATGTCTC 59.705 44.000 0.00 0.00 0.00 3.36
3 4 5.045869 TCCCTCCGTCTCAAAATAAATGTCT 60.046 40.000 0.00 0.00 0.00 3.41
4 5 5.183228 TCCCTCCGTCTCAAAATAAATGTC 58.817 41.667 0.00 0.00 0.00 3.06
5 6 5.174037 TCCCTCCGTCTCAAAATAAATGT 57.826 39.130 0.00 0.00 0.00 2.71
6 7 5.186198 ACTCCCTCCGTCTCAAAATAAATG 58.814 41.667 0.00 0.00 0.00 2.32
7 8 5.437191 ACTCCCTCCGTCTCAAAATAAAT 57.563 39.130 0.00 0.00 0.00 1.40
8 9 4.903045 ACTCCCTCCGTCTCAAAATAAA 57.097 40.909 0.00 0.00 0.00 1.40
9 10 5.266788 TCTACTCCCTCCGTCTCAAAATAA 58.733 41.667 0.00 0.00 0.00 1.40
10 11 4.863548 TCTACTCCCTCCGTCTCAAAATA 58.136 43.478 0.00 0.00 0.00 1.40
12 13 3.165087 TCTACTCCCTCCGTCTCAAAA 57.835 47.619 0.00 0.00 0.00 2.44
14 15 3.715315 TCTATCTACTCCCTCCGTCTCAA 59.285 47.826 0.00 0.00 0.00 3.02
15 16 3.315596 TCTATCTACTCCCTCCGTCTCA 58.684 50.000 0.00 0.00 0.00 3.27
16 17 4.040706 TCTTCTATCTACTCCCTCCGTCTC 59.959 50.000 0.00 0.00 0.00 3.36
17 18 3.975312 TCTTCTATCTACTCCCTCCGTCT 59.025 47.826 0.00 0.00 0.00 4.18
18 19 4.040706 TCTCTTCTATCTACTCCCTCCGTC 59.959 50.000 0.00 0.00 0.00 4.79
19 20 3.975312 TCTCTTCTATCTACTCCCTCCGT 59.025 47.826 0.00 0.00 0.00 4.69
20 21 4.627284 TCTCTTCTATCTACTCCCTCCG 57.373 50.000 0.00 0.00 0.00 4.63
21 22 5.222254 ACCATCTCTTCTATCTACTCCCTCC 60.222 48.000 0.00 0.00 0.00 4.30
22 23 5.887754 ACCATCTCTTCTATCTACTCCCTC 58.112 45.833 0.00 0.00 0.00 4.30
23 24 5.941146 ACCATCTCTTCTATCTACTCCCT 57.059 43.478 0.00 0.00 0.00 4.20
24 25 6.544650 TGTACCATCTCTTCTATCTACTCCC 58.455 44.000 0.00 0.00 0.00 4.30
25 26 7.122055 CCATGTACCATCTCTTCTATCTACTCC 59.878 44.444 0.00 0.00 0.00 3.85
52 53 1.898574 CTCTGTGGCGGCAAAAGGT 60.899 57.895 15.50 0.00 0.00 3.50
71 72 2.997897 GTCAGACCAGCCCGAGGT 60.998 66.667 0.00 0.00 43.46 3.85
91 93 0.035056 GGCACACATCTTGTAGGCCT 60.035 55.000 11.78 11.78 42.20 5.19
167 170 0.854908 AGAGGTAGGGGGACTAGAGC 59.145 60.000 0.00 0.00 30.77 4.09
199 205 2.831742 TTCGCCGCTAGGGACGAT 60.832 61.111 18.25 0.00 41.60 3.73
312 323 1.348036 AGGCAGTGGACTTTACTGGTC 59.652 52.381 7.19 0.00 44.36 4.02
404 415 0.808453 ACCGCCGTATGAATCAACCG 60.808 55.000 0.00 0.00 0.00 4.44
555 566 0.379669 CATCTGCACCAAATCCGAGC 59.620 55.000 0.00 0.00 0.00 5.03
556 567 1.019673 CCATCTGCACCAAATCCGAG 58.980 55.000 0.00 0.00 0.00 4.63
557 568 0.394216 CCCATCTGCACCAAATCCGA 60.394 55.000 0.00 0.00 0.00 4.55
558 569 0.394216 TCCCATCTGCACCAAATCCG 60.394 55.000 0.00 0.00 0.00 4.18
559 570 1.396653 CTCCCATCTGCACCAAATCC 58.603 55.000 0.00 0.00 0.00 3.01
560 571 1.064463 TCCTCCCATCTGCACCAAATC 60.064 52.381 0.00 0.00 0.00 2.17
561 572 1.002069 TCCTCCCATCTGCACCAAAT 58.998 50.000 0.00 0.00 0.00 2.32
562 573 0.329261 CTCCTCCCATCTGCACCAAA 59.671 55.000 0.00 0.00 0.00 3.28
563 574 0.547471 TCTCCTCCCATCTGCACCAA 60.547 55.000 0.00 0.00 0.00 3.67
564 575 0.979709 CTCTCCTCCCATCTGCACCA 60.980 60.000 0.00 0.00 0.00 4.17
565 576 1.694133 CCTCTCCTCCCATCTGCACC 61.694 65.000 0.00 0.00 0.00 5.01
566 577 1.694133 CCCTCTCCTCCCATCTGCAC 61.694 65.000 0.00 0.00 0.00 4.57
567 578 1.383664 CCCTCTCCTCCCATCTGCA 60.384 63.158 0.00 0.00 0.00 4.41
721 753 4.150897 AGAGGAACAGCACAACACTAAA 57.849 40.909 0.00 0.00 0.00 1.85
749 781 8.618677 TCGTTCACATACTACTTCAATACCTAG 58.381 37.037 0.00 0.00 0.00 3.02
763 795 5.794894 AGAGTTTCCATTCGTTCACATACT 58.205 37.500 0.00 0.00 0.00 2.12
801 833 7.445402 CGTCCAAGAAAAATAGGTCATATCCAT 59.555 37.037 0.00 0.00 0.00 3.41
848 886 8.791355 AACCATTTTACAAGCTTAAAACTACG 57.209 30.769 8.87 1.68 34.53 3.51
849 887 9.188588 GGAACCATTTTACAAGCTTAAAACTAC 57.811 33.333 8.87 1.88 34.53 2.73
877 916 4.098914 AGTTTGTATCAGGTTTGGCAGA 57.901 40.909 0.00 0.00 0.00 4.26
883 922 9.528489 AACATAACCATAGTTTGTATCAGGTTT 57.472 29.630 0.00 0.00 38.66 3.27
969 1017 9.301153 GAAACCTGCATTAAAACCATAATACAG 57.699 33.333 0.00 0.00 36.81 2.74
1102 1150 1.537202 GTGCATTTCGCCTGAGTTTCT 59.463 47.619 0.00 0.00 41.33 2.52
1179 1227 5.371526 TGAATGATGCTATCTTCTGGGTTC 58.628 41.667 0.00 0.00 0.00 3.62
1200 1248 5.195185 TGGTACATAGAACCACGACTATGA 58.805 41.667 17.24 3.12 44.80 2.15
1288 1336 6.110543 TGACATAAACGCATCTCTTTCATG 57.889 37.500 0.00 0.00 0.00 3.07
1320 1368 0.590230 GCTGAGAGGACGAATCGACG 60.590 60.000 10.55 0.00 39.31 5.12
1391 1439 6.377429 ACGAGTTATGTTCATAGAAGACCTCA 59.623 38.462 0.00 0.00 0.00 3.86
1444 1492 2.476619 CCTCACGCGATGAAATATCCAC 59.523 50.000 15.93 0.00 36.69 4.02
1521 1569 4.698575 GGAACCTGTCTCTTACATCATCC 58.301 47.826 0.00 0.00 37.50 3.51
1539 1587 1.227468 GAGCGATAACCCCGGGAAC 60.227 63.158 26.32 7.17 0.00 3.62
1558 1606 2.290641 GACACGTGGCATTGTCTTCTTT 59.709 45.455 18.77 0.00 39.30 2.52
1589 1637 1.669779 CTAGCAAATGAGGAGCAGCAC 59.330 52.381 0.00 0.00 0.00 4.40
1688 1736 7.158021 GGGGAGATTACTCACTGAATCTATTG 58.842 42.308 0.00 0.00 45.11 1.90
1698 1746 3.108376 GGACTTGGGGAGATTACTCACT 58.892 50.000 0.00 0.00 45.11 3.41
1737 1785 4.418013 TGGACATGTAGCATCAAAAACG 57.582 40.909 0.00 0.00 0.00 3.60
1962 2010 2.231235 GCATTTAGGTGTGGGAGTTTGG 59.769 50.000 0.00 0.00 0.00 3.28
1968 2016 1.367346 TCTGGCATTTAGGTGTGGGA 58.633 50.000 0.00 0.00 0.00 4.37
2060 2108 0.968405 ACCAAAAGCGCCATTGTCAT 59.032 45.000 18.12 4.47 0.00 3.06
2070 2118 3.769536 ACAGAACTCAAAACCAAAAGCG 58.230 40.909 0.00 0.00 0.00 4.68
2123 2171 0.526211 GTTCCCGGATTTCCAAGTGC 59.474 55.000 0.73 0.00 35.14 4.40
2139 2187 6.899114 AGTGTAAATCCAATTCAGTTCGTTC 58.101 36.000 0.00 0.00 0.00 3.95
2181 2229 0.108520 TTCCCACGGTACTTGATCGC 60.109 55.000 0.00 0.00 33.78 4.58
2377 2425 1.001974 TGGTTGAGTGGAATCTGGACG 59.998 52.381 0.00 0.00 0.00 4.79
2380 2428 1.073763 TGGTGGTTGAGTGGAATCTGG 59.926 52.381 0.00 0.00 0.00 3.86
2578 2626 0.322187 AATTCGAGGGACCGGGTTTG 60.322 55.000 6.32 0.00 0.00 2.93
2591 2639 5.123820 GGTGATGATCCAGTTTTCAATTCGA 59.876 40.000 0.00 0.00 0.00 3.71
2592 2640 5.106197 TGGTGATGATCCAGTTTTCAATTCG 60.106 40.000 0.00 0.00 0.00 3.34
2616 2664 5.163280 TGCTGTAACCACTTTAACTGTACCT 60.163 40.000 0.00 0.00 0.00 3.08
2625 2673 1.609580 CCGCCTGCTGTAACCACTTTA 60.610 52.381 0.00 0.00 0.00 1.85
2709 2757 2.829384 GCAGTCACACCTTCCCCCA 61.829 63.158 0.00 0.00 0.00 4.96
2865 2913 5.553123 ACAGGTGGTAATAATCAAACACGA 58.447 37.500 0.00 0.00 0.00 4.35
2972 3021 9.797642 ACAGTGCATTTCAATTATCATATAGGA 57.202 29.630 0.00 0.00 0.00 2.94
3001 3050 8.406297 GGATATAGCTTTTAAGTGGGAAACAAG 58.594 37.037 0.00 0.00 0.00 3.16
3005 3054 6.370453 GGGGATATAGCTTTTAAGTGGGAAA 58.630 40.000 0.00 0.00 0.00 3.13
3029 3078 9.904647 TTAATTAGCGCAAGTATAACTAAAACG 57.095 29.630 11.47 0.00 41.68 3.60
3067 3116 8.539674 GTGCATTCGTCAAAAAGAAGTTTTAAT 58.460 29.630 0.00 0.00 37.32 1.40
3183 3232 7.598869 ACGAAAATCCTTTAAATCAAAAGAGCC 59.401 33.333 0.00 0.00 38.50 4.70
3184 3233 8.520835 ACGAAAATCCTTTAAATCAAAAGAGC 57.479 30.769 0.00 0.00 38.50 4.09
3194 3243 9.738832 CCAAAGTTTCTACGAAAATCCTTTAAA 57.261 29.630 0.00 0.00 0.00 1.52
3195 3244 9.122779 TCCAAAGTTTCTACGAAAATCCTTTAA 57.877 29.630 0.00 0.00 0.00 1.52
3196 3245 8.680039 TCCAAAGTTTCTACGAAAATCCTTTA 57.320 30.769 0.00 0.00 0.00 1.85
3197 3246 7.255486 CCTCCAAAGTTTCTACGAAAATCCTTT 60.255 37.037 0.00 0.00 0.00 3.11
3198 3247 6.206829 CCTCCAAAGTTTCTACGAAAATCCTT 59.793 38.462 0.00 0.00 0.00 3.36
3199 3248 5.705905 CCTCCAAAGTTTCTACGAAAATCCT 59.294 40.000 0.00 0.00 0.00 3.24
3200 3249 5.704053 TCCTCCAAAGTTTCTACGAAAATCC 59.296 40.000 0.00 0.00 0.00 3.01
3201 3250 6.796705 TCCTCCAAAGTTTCTACGAAAATC 57.203 37.500 0.00 0.00 0.00 2.17
3202 3251 7.761038 AATCCTCCAAAGTTTCTACGAAAAT 57.239 32.000 0.00 0.00 0.00 1.82
3203 3252 8.152246 TCTAATCCTCCAAAGTTTCTACGAAAA 58.848 33.333 0.00 0.00 0.00 2.29
3204 3253 7.673180 TCTAATCCTCCAAAGTTTCTACGAAA 58.327 34.615 0.00 0.00 0.00 3.46
3205 3254 7.235935 TCTAATCCTCCAAAGTTTCTACGAA 57.764 36.000 0.00 0.00 0.00 3.85
3206 3255 6.845758 TCTAATCCTCCAAAGTTTCTACGA 57.154 37.500 0.00 0.00 0.00 3.43
3207 3256 8.132604 GATTCTAATCCTCCAAAGTTTCTACG 57.867 38.462 0.00 0.00 0.00 3.51
3254 3303 9.057089 GGATTCAATCCTACGAATCAAATAACT 57.943 33.333 9.43 0.00 46.12 2.24
3270 3319 8.246481 GGAAAAACTCCTGTGGGATTCAATCC 62.246 46.154 8.06 8.06 44.04 3.01
3271 3320 5.336770 GGAAAAACTCCTGTGGGATTCAATC 60.337 44.000 0.00 0.00 41.61 2.67
3272 3321 4.528206 GGAAAAACTCCTGTGGGATTCAAT 59.472 41.667 0.00 0.00 41.61 2.57
3273 3322 3.895041 GGAAAAACTCCTGTGGGATTCAA 59.105 43.478 0.00 0.00 41.61 2.69
3274 3323 3.496331 GGAAAAACTCCTGTGGGATTCA 58.504 45.455 0.00 0.00 41.61 2.57
3285 3334 7.423199 ACAAAGAAATCGTTAGGAAAAACTCC 58.577 34.615 0.00 0.00 45.81 3.85
3286 3335 9.378597 GTACAAAGAAATCGTTAGGAAAAACTC 57.621 33.333 0.00 0.00 0.00 3.01
3287 3336 9.117183 AGTACAAAGAAATCGTTAGGAAAAACT 57.883 29.630 0.00 0.00 0.00 2.66
3290 3339 9.768662 AGTAGTACAAAGAAATCGTTAGGAAAA 57.231 29.630 2.52 0.00 0.00 2.29
3291 3340 9.768662 AAGTAGTACAAAGAAATCGTTAGGAAA 57.231 29.630 2.52 0.00 0.00 3.13
3292 3341 9.415544 GAAGTAGTACAAAGAAATCGTTAGGAA 57.584 33.333 2.52 0.00 0.00 3.36
3293 3342 8.031277 GGAAGTAGTACAAAGAAATCGTTAGGA 58.969 37.037 2.52 0.00 0.00 2.94
3294 3343 7.277319 GGGAAGTAGTACAAAGAAATCGTTAGG 59.723 40.741 2.52 0.00 0.00 2.69
3295 3344 7.816031 TGGGAAGTAGTACAAAGAAATCGTTAG 59.184 37.037 2.52 0.00 0.00 2.34
3296 3345 7.669427 TGGGAAGTAGTACAAAGAAATCGTTA 58.331 34.615 2.52 0.00 0.00 3.18
3297 3346 6.527423 TGGGAAGTAGTACAAAGAAATCGTT 58.473 36.000 2.52 0.00 0.00 3.85
3298 3347 6.105397 TGGGAAGTAGTACAAAGAAATCGT 57.895 37.500 2.52 0.00 0.00 3.73
3299 3348 7.438459 CCTATGGGAAGTAGTACAAAGAAATCG 59.562 40.741 2.52 0.00 33.58 3.34
3300 3349 8.483758 TCCTATGGGAAGTAGTACAAAGAAATC 58.516 37.037 2.52 0.00 38.93 2.17
3301 3350 8.388656 TCCTATGGGAAGTAGTACAAAGAAAT 57.611 34.615 2.52 0.00 38.93 2.17
3302 3351 7.801893 TCCTATGGGAAGTAGTACAAAGAAA 57.198 36.000 2.52 0.00 38.93 2.52
3303 3352 7.989947 ATCCTATGGGAAGTAGTACAAAGAA 57.010 36.000 0.22 0.00 45.78 2.52
3304 3353 7.989947 AATCCTATGGGAAGTAGTACAAAGA 57.010 36.000 0.22 0.00 45.78 2.52
3305 3354 8.487028 AGAAATCCTATGGGAAGTAGTACAAAG 58.513 37.037 0.22 0.00 45.78 2.77
3306 3355 8.388656 AGAAATCCTATGGGAAGTAGTACAAA 57.611 34.615 0.22 0.00 45.78 2.83
3307 3356 7.989947 AGAAATCCTATGGGAAGTAGTACAA 57.010 36.000 0.22 0.00 45.78 2.41
3308 3357 7.232941 GCTAGAAATCCTATGGGAAGTAGTACA 59.767 40.741 0.22 0.00 45.78 2.90
3309 3358 7.232941 TGCTAGAAATCCTATGGGAAGTAGTAC 59.767 40.741 0.22 0.00 45.78 2.73
3310 3359 7.302948 TGCTAGAAATCCTATGGGAAGTAGTA 58.697 38.462 0.22 0.00 45.78 1.82
3311 3360 6.143915 TGCTAGAAATCCTATGGGAAGTAGT 58.856 40.000 0.22 0.00 45.78 2.73
3312 3361 6.672266 TGCTAGAAATCCTATGGGAAGTAG 57.328 41.667 0.22 2.34 45.78 2.57
3313 3362 6.213600 GGATGCTAGAAATCCTATGGGAAGTA 59.786 42.308 0.22 0.00 45.78 2.24
3314 3363 5.013599 GGATGCTAGAAATCCTATGGGAAGT 59.986 44.000 0.22 0.00 45.78 3.01
3315 3364 5.013495 TGGATGCTAGAAATCCTATGGGAAG 59.987 44.000 19.93 0.00 45.78 3.46
3316 3365 4.913355 TGGATGCTAGAAATCCTATGGGAA 59.087 41.667 19.93 2.19 45.78 3.97
3317 3366 4.287067 GTGGATGCTAGAAATCCTATGGGA 59.713 45.833 19.93 0.00 43.52 4.37
3318 3367 4.288105 AGTGGATGCTAGAAATCCTATGGG 59.712 45.833 19.93 0.00 43.52 4.00
3319 3368 5.012458 TGAGTGGATGCTAGAAATCCTATGG 59.988 44.000 19.93 0.00 43.52 2.74
3320 3369 6.106648 TGAGTGGATGCTAGAAATCCTATG 57.893 41.667 19.93 0.00 43.52 2.23
3321 3370 6.753913 TTGAGTGGATGCTAGAAATCCTAT 57.246 37.500 19.93 11.75 43.52 2.57
3322 3371 6.349300 GTTTGAGTGGATGCTAGAAATCCTA 58.651 40.000 19.93 8.67 43.52 2.94
3323 3372 5.189180 GTTTGAGTGGATGCTAGAAATCCT 58.811 41.667 19.93 6.45 43.52 3.24
3324 3373 4.336713 GGTTTGAGTGGATGCTAGAAATCC 59.663 45.833 14.93 14.93 43.44 3.01
3325 3374 5.189180 AGGTTTGAGTGGATGCTAGAAATC 58.811 41.667 0.00 0.00 0.00 2.17
3326 3375 5.045286 AGAGGTTTGAGTGGATGCTAGAAAT 60.045 40.000 0.00 0.00 0.00 2.17
3327 3376 4.287067 AGAGGTTTGAGTGGATGCTAGAAA 59.713 41.667 0.00 0.00 0.00 2.52
3328 3377 3.840666 AGAGGTTTGAGTGGATGCTAGAA 59.159 43.478 0.00 0.00 0.00 2.10
3329 3378 3.445008 AGAGGTTTGAGTGGATGCTAGA 58.555 45.455 0.00 0.00 0.00 2.43
3330 3379 3.902881 AGAGGTTTGAGTGGATGCTAG 57.097 47.619 0.00 0.00 0.00 3.42
3331 3380 3.582647 TGAAGAGGTTTGAGTGGATGCTA 59.417 43.478 0.00 0.00 0.00 3.49
3332 3381 2.373169 TGAAGAGGTTTGAGTGGATGCT 59.627 45.455 0.00 0.00 0.00 3.79
3333 3382 2.783135 TGAAGAGGTTTGAGTGGATGC 58.217 47.619 0.00 0.00 0.00 3.91
3334 3383 5.532406 TCTTTTGAAGAGGTTTGAGTGGATG 59.468 40.000 0.00 0.00 32.71 3.51
3335 3384 5.694995 TCTTTTGAAGAGGTTTGAGTGGAT 58.305 37.500 0.00 0.00 32.71 3.41
3336 3385 5.110814 TCTTTTGAAGAGGTTTGAGTGGA 57.889 39.130 0.00 0.00 32.71 4.02
3337 3386 5.835113 TTCTTTTGAAGAGGTTTGAGTGG 57.165 39.130 0.00 0.00 39.03 4.00
3338 3387 6.264067 AGGATTCTTTTGAAGAGGTTTGAGTG 59.736 38.462 0.00 0.00 42.30 3.51
3339 3388 6.368805 AGGATTCTTTTGAAGAGGTTTGAGT 58.631 36.000 0.00 0.00 42.30 3.41
3340 3389 6.890979 AGGATTCTTTTGAAGAGGTTTGAG 57.109 37.500 0.00 0.00 42.30 3.02
3341 3390 7.124147 ACAAAGGATTCTTTTGAAGAGGTTTGA 59.876 33.333 23.33 0.00 40.92 2.69
3342 3391 7.267857 ACAAAGGATTCTTTTGAAGAGGTTTG 58.732 34.615 23.33 0.00 40.92 2.93
3343 3392 7.423844 ACAAAGGATTCTTTTGAAGAGGTTT 57.576 32.000 23.33 0.77 40.92 3.27
3344 3393 7.423844 AACAAAGGATTCTTTTGAAGAGGTT 57.576 32.000 23.33 7.29 40.92 3.50
3345 3394 7.423844 AAACAAAGGATTCTTTTGAAGAGGT 57.576 32.000 23.33 2.02 40.92 3.85
3346 3395 8.722480 AAAAACAAAGGATTCTTTTGAAGAGG 57.278 30.769 23.33 1.41 40.92 3.69
3347 3396 8.820933 GGAAAAACAAAGGATTCTTTTGAAGAG 58.179 33.333 23.33 2.03 40.92 2.85
3348 3397 8.539544 AGGAAAAACAAAGGATTCTTTTGAAGA 58.460 29.630 23.33 0.00 40.92 2.87
3349 3398 8.722480 AGGAAAAACAAAGGATTCTTTTGAAG 57.278 30.769 23.33 2.66 40.92 3.02
3351 3400 9.762933 CATAGGAAAAACAAAGGATTCTTTTGA 57.237 29.630 23.33 3.58 40.92 2.69
3352 3401 9.762933 TCATAGGAAAAACAAAGGATTCTTTTG 57.237 29.630 16.99 16.99 40.92 2.44
3354 3403 9.933723 CATCATAGGAAAAACAAAGGATTCTTT 57.066 29.630 0.00 0.00 43.41 2.52
3355 3404 8.037166 GCATCATAGGAAAAACAAAGGATTCTT 58.963 33.333 0.00 0.00 34.07 2.52
3356 3405 7.178983 TGCATCATAGGAAAAACAAAGGATTCT 59.821 33.333 0.00 0.00 0.00 2.40
3357 3406 7.322664 TGCATCATAGGAAAAACAAAGGATTC 58.677 34.615 0.00 0.00 0.00 2.52
3358 3407 7.243604 TGCATCATAGGAAAAACAAAGGATT 57.756 32.000 0.00 0.00 0.00 3.01
3359 3408 6.855763 TGCATCATAGGAAAAACAAAGGAT 57.144 33.333 0.00 0.00 0.00 3.24
3360 3409 6.662865 TTGCATCATAGGAAAAACAAAGGA 57.337 33.333 0.00 0.00 0.00 3.36
3361 3410 7.098477 TGATTGCATCATAGGAAAAACAAAGG 58.902 34.615 0.00 0.00 33.59 3.11
3362 3411 8.537049 TTGATTGCATCATAGGAAAAACAAAG 57.463 30.769 0.00 0.00 39.39 2.77
3363 3412 8.772705 GTTTGATTGCATCATAGGAAAAACAAA 58.227 29.630 0.00 0.00 39.39 2.83
3364 3413 7.930325 TGTTTGATTGCATCATAGGAAAAACAA 59.070 29.630 0.00 0.00 39.39 2.83
3365 3414 7.440198 TGTTTGATTGCATCATAGGAAAAACA 58.560 30.769 0.00 0.00 39.39 2.83
3366 3415 7.887996 TGTTTGATTGCATCATAGGAAAAAC 57.112 32.000 0.00 0.00 39.39 2.43
3367 3416 8.772705 GTTTGTTTGATTGCATCATAGGAAAAA 58.227 29.630 0.00 0.00 39.39 1.94
3368 3417 7.930325 TGTTTGTTTGATTGCATCATAGGAAAA 59.070 29.630 0.00 0.00 39.39 2.29
3369 3418 7.440198 TGTTTGTTTGATTGCATCATAGGAAA 58.560 30.769 0.00 0.00 39.39 3.13
3370 3419 6.990798 TGTTTGTTTGATTGCATCATAGGAA 58.009 32.000 0.00 0.00 39.39 3.36
3371 3420 6.587206 TGTTTGTTTGATTGCATCATAGGA 57.413 33.333 0.00 0.00 39.39 2.94
3372 3421 7.655236 TTTGTTTGTTTGATTGCATCATAGG 57.345 32.000 0.00 0.00 39.39 2.57
3373 3422 9.749490 GATTTTGTTTGTTTGATTGCATCATAG 57.251 29.630 0.00 0.00 39.39 2.23
3374 3423 8.719648 GGATTTTGTTTGTTTGATTGCATCATA 58.280 29.630 0.00 0.00 39.39 2.15
3375 3424 7.446013 AGGATTTTGTTTGTTTGATTGCATCAT 59.554 29.630 0.00 0.00 39.39 2.45
3376 3425 6.766944 AGGATTTTGTTTGTTTGATTGCATCA 59.233 30.769 0.00 0.00 37.55 3.07
3377 3426 7.073265 CAGGATTTTGTTTGTTTGATTGCATC 58.927 34.615 0.00 0.00 0.00 3.91
3378 3427 6.543100 ACAGGATTTTGTTTGTTTGATTGCAT 59.457 30.769 0.00 0.00 0.00 3.96
3379 3428 5.879223 ACAGGATTTTGTTTGTTTGATTGCA 59.121 32.000 0.00 0.00 0.00 4.08
3380 3429 6.362210 ACAGGATTTTGTTTGTTTGATTGC 57.638 33.333 0.00 0.00 0.00 3.56
3381 3430 7.307337 GCCTACAGGATTTTGTTTGTTTGATTG 60.307 37.037 0.00 0.00 37.39 2.67
3382 3431 6.705825 GCCTACAGGATTTTGTTTGTTTGATT 59.294 34.615 0.00 0.00 37.39 2.57
3383 3432 6.223120 GCCTACAGGATTTTGTTTGTTTGAT 58.777 36.000 0.00 0.00 37.39 2.57
3384 3433 5.452636 GGCCTACAGGATTTTGTTTGTTTGA 60.453 40.000 0.00 0.00 37.39 2.69
3385 3434 4.749598 GGCCTACAGGATTTTGTTTGTTTG 59.250 41.667 0.00 0.00 37.39 2.93
3386 3435 4.202315 GGGCCTACAGGATTTTGTTTGTTT 60.202 41.667 0.84 0.00 37.39 2.83
3387 3436 3.323691 GGGCCTACAGGATTTTGTTTGTT 59.676 43.478 0.84 0.00 37.39 2.83
3388 3437 2.897326 GGGCCTACAGGATTTTGTTTGT 59.103 45.455 0.84 0.00 37.39 2.83
3389 3438 3.165071 AGGGCCTACAGGATTTTGTTTG 58.835 45.455 2.82 0.00 37.39 2.93
3390 3439 3.542969 AGGGCCTACAGGATTTTGTTT 57.457 42.857 2.82 0.00 37.39 2.83
3391 3440 3.591977 ACTAGGGCCTACAGGATTTTGTT 59.408 43.478 9.81 0.00 37.39 2.83
3392 3441 3.190439 ACTAGGGCCTACAGGATTTTGT 58.810 45.455 9.81 0.00 37.39 2.83
3393 3442 3.933861 ACTAGGGCCTACAGGATTTTG 57.066 47.619 9.81 0.00 37.39 2.44
3394 3443 6.159751 TGAAATACTAGGGCCTACAGGATTTT 59.840 38.462 22.01 11.86 33.84 1.82
3395 3444 5.670361 TGAAATACTAGGGCCTACAGGATTT 59.330 40.000 21.50 21.50 35.89 2.17
3396 3445 5.224441 TGAAATACTAGGGCCTACAGGATT 58.776 41.667 9.81 8.65 37.39 3.01
3397 3446 4.827789 TGAAATACTAGGGCCTACAGGAT 58.172 43.478 9.81 1.46 37.39 3.24
3398 3447 4.274794 TGAAATACTAGGGCCTACAGGA 57.725 45.455 9.81 0.00 37.39 3.86
3399 3448 5.568620 ATTGAAATACTAGGGCCTACAGG 57.431 43.478 9.81 2.63 38.53 4.00
3400 3449 6.831976 AGAATTGAAATACTAGGGCCTACAG 58.168 40.000 9.81 5.32 0.00 2.74
3401 3450 6.824958 AGAATTGAAATACTAGGGCCTACA 57.175 37.500 9.81 1.80 0.00 2.74
3402 3451 8.376270 ACATAGAATTGAAATACTAGGGCCTAC 58.624 37.037 9.81 0.00 0.00 3.18
3403 3452 8.506196 ACATAGAATTGAAATACTAGGGCCTA 57.494 34.615 13.73 13.73 0.00 3.93
3404 3453 7.394144 ACATAGAATTGAAATACTAGGGCCT 57.606 36.000 12.58 12.58 0.00 5.19
3405 3454 8.465273 AAACATAGAATTGAAATACTAGGGCC 57.535 34.615 0.00 0.00 0.00 5.80
3416 3465 9.540538 TGGGAATAGGAAAAACATAGAATTGAA 57.459 29.630 0.00 0.00 0.00 2.69
3417 3466 8.966868 GTGGGAATAGGAAAAACATAGAATTGA 58.033 33.333 0.00 0.00 0.00 2.57
3418 3467 7.915397 CGTGGGAATAGGAAAAACATAGAATTG 59.085 37.037 0.00 0.00 0.00 2.32
3419 3468 7.416326 GCGTGGGAATAGGAAAAACATAGAATT 60.416 37.037 0.00 0.00 0.00 2.17
3420 3469 6.039382 GCGTGGGAATAGGAAAAACATAGAAT 59.961 38.462 0.00 0.00 0.00 2.40
3421 3470 5.355910 GCGTGGGAATAGGAAAAACATAGAA 59.644 40.000 0.00 0.00 0.00 2.10
3422 3471 4.879545 GCGTGGGAATAGGAAAAACATAGA 59.120 41.667 0.00 0.00 0.00 1.98
3423 3472 4.881850 AGCGTGGGAATAGGAAAAACATAG 59.118 41.667 0.00 0.00 0.00 2.23
3424 3473 4.850680 AGCGTGGGAATAGGAAAAACATA 58.149 39.130 0.00 0.00 0.00 2.29
3425 3474 3.697166 AGCGTGGGAATAGGAAAAACAT 58.303 40.909 0.00 0.00 0.00 2.71
3426 3475 3.149005 AGCGTGGGAATAGGAAAAACA 57.851 42.857 0.00 0.00 0.00 2.83
3427 3476 4.514781 AAAGCGTGGGAATAGGAAAAAC 57.485 40.909 0.00 0.00 0.00 2.43
3428 3477 6.005198 TCTAAAAGCGTGGGAATAGGAAAAA 58.995 36.000 0.00 0.00 0.00 1.94
3429 3478 5.562635 TCTAAAAGCGTGGGAATAGGAAAA 58.437 37.500 0.00 0.00 0.00 2.29
3430 3479 5.168647 TCTAAAAGCGTGGGAATAGGAAA 57.831 39.130 0.00 0.00 0.00 3.13
3431 3480 4.829872 TCTAAAAGCGTGGGAATAGGAA 57.170 40.909 0.00 0.00 0.00 3.36
3432 3481 4.829872 TTCTAAAAGCGTGGGAATAGGA 57.170 40.909 0.00 0.00 0.00 2.94
3433 3482 4.515567 GGATTCTAAAAGCGTGGGAATAGG 59.484 45.833 0.00 0.00 0.00 2.57
3434 3483 5.368989 AGGATTCTAAAAGCGTGGGAATAG 58.631 41.667 0.00 0.00 0.00 1.73
3435 3484 5.367945 AGGATTCTAAAAGCGTGGGAATA 57.632 39.130 0.00 0.00 0.00 1.75
3436 3485 4.236527 AGGATTCTAAAAGCGTGGGAAT 57.763 40.909 0.00 0.00 0.00 3.01
3437 3486 3.713826 AGGATTCTAAAAGCGTGGGAA 57.286 42.857 0.00 0.00 0.00 3.97
3438 3487 4.407621 TCATAGGATTCTAAAAGCGTGGGA 59.592 41.667 0.00 0.00 0.00 4.37
3439 3488 4.703897 TCATAGGATTCTAAAAGCGTGGG 58.296 43.478 0.00 0.00 0.00 4.61
3440 3489 6.483307 TGATTCATAGGATTCTAAAAGCGTGG 59.517 38.462 1.52 0.00 0.00 4.94
3441 3490 7.482654 TGATTCATAGGATTCTAAAAGCGTG 57.517 36.000 1.52 0.00 0.00 5.34
3442 3491 8.506168 TTTGATTCATAGGATTCTAAAAGCGT 57.494 30.769 1.52 0.00 0.00 5.07
3443 3492 8.830580 TCTTTGATTCATAGGATTCTAAAAGCG 58.169 33.333 4.57 0.00 0.00 4.68
3446 3495 9.125026 GCCTCTTTGATTCATAGGATTCTAAAA 57.875 33.333 12.17 0.00 0.00 1.52
3447 3496 7.442364 CGCCTCTTTGATTCATAGGATTCTAAA 59.558 37.037 12.17 0.96 0.00 1.85
3448 3497 6.931281 CGCCTCTTTGATTCATAGGATTCTAA 59.069 38.462 12.17 0.00 0.00 2.10
3449 3498 6.459066 CGCCTCTTTGATTCATAGGATTCTA 58.541 40.000 12.17 0.00 0.00 2.10
3450 3499 5.303971 CGCCTCTTTGATTCATAGGATTCT 58.696 41.667 12.17 0.00 0.00 2.40
3451 3500 4.083590 GCGCCTCTTTGATTCATAGGATTC 60.084 45.833 12.17 0.00 0.00 2.52
3452 3501 3.817647 GCGCCTCTTTGATTCATAGGATT 59.182 43.478 12.17 0.00 0.00 3.01
3453 3502 3.072184 AGCGCCTCTTTGATTCATAGGAT 59.928 43.478 2.29 0.00 0.00 3.24
3454 3503 2.435805 AGCGCCTCTTTGATTCATAGGA 59.564 45.455 2.29 0.85 0.00 2.94
3455 3504 2.843701 AGCGCCTCTTTGATTCATAGG 58.156 47.619 2.29 5.38 0.00 2.57
3456 3505 4.626042 ACTAGCGCCTCTTTGATTCATAG 58.374 43.478 2.29 0.00 0.00 2.23
3457 3506 4.672587 ACTAGCGCCTCTTTGATTCATA 57.327 40.909 2.29 0.00 0.00 2.15
3458 3507 3.550437 ACTAGCGCCTCTTTGATTCAT 57.450 42.857 2.29 0.00 0.00 2.57
3459 3508 4.672587 ATACTAGCGCCTCTTTGATTCA 57.327 40.909 2.29 0.00 0.00 2.57
3460 3509 5.523916 TGAAATACTAGCGCCTCTTTGATTC 59.476 40.000 2.29 0.48 0.00 2.52
3461 3510 5.428253 TGAAATACTAGCGCCTCTTTGATT 58.572 37.500 2.29 0.00 0.00 2.57
3462 3511 5.023533 TGAAATACTAGCGCCTCTTTGAT 57.976 39.130 2.29 0.00 0.00 2.57
3463 3512 4.465632 TGAAATACTAGCGCCTCTTTGA 57.534 40.909 2.29 0.00 0.00 2.69
3464 3513 4.201822 GGTTGAAATACTAGCGCCTCTTTG 60.202 45.833 2.29 0.00 0.00 2.77
3465 3514 3.939592 GGTTGAAATACTAGCGCCTCTTT 59.060 43.478 2.29 0.00 0.00 2.52
3466 3515 3.055385 TGGTTGAAATACTAGCGCCTCTT 60.055 43.478 2.29 0.00 0.00 2.85
3467 3516 2.500098 TGGTTGAAATACTAGCGCCTCT 59.500 45.455 2.29 0.00 0.00 3.69
3468 3517 2.901249 TGGTTGAAATACTAGCGCCTC 58.099 47.619 2.29 0.00 0.00 4.70
3469 3518 3.560636 ATGGTTGAAATACTAGCGCCT 57.439 42.857 2.29 0.00 0.00 5.52
3470 3519 3.377172 ACAATGGTTGAAATACTAGCGCC 59.623 43.478 2.29 0.00 0.00 6.53
3471 3520 4.616181 ACAATGGTTGAAATACTAGCGC 57.384 40.909 0.00 0.00 0.00 5.92
3472 3521 7.867445 AAAAACAATGGTTGAAATACTAGCG 57.133 32.000 0.00 0.00 37.30 4.26
3475 3524 9.699703 GCCTTAAAAACAATGGTTGAAATACTA 57.300 29.630 0.00 0.00 37.30 1.82
3476 3525 7.383843 CGCCTTAAAAACAATGGTTGAAATACT 59.616 33.333 0.00 0.00 37.30 2.12
3477 3526 7.170151 ACGCCTTAAAAACAATGGTTGAAATAC 59.830 33.333 0.00 0.00 37.30 1.89
3478 3527 7.210873 ACGCCTTAAAAACAATGGTTGAAATA 58.789 30.769 0.00 0.00 37.30 1.40
3479 3528 6.052360 ACGCCTTAAAAACAATGGTTGAAAT 58.948 32.000 0.00 0.00 37.30 2.17
3480 3529 5.420409 ACGCCTTAAAAACAATGGTTGAAA 58.580 33.333 0.00 0.00 37.30 2.69
3481 3530 5.012328 ACGCCTTAAAAACAATGGTTGAA 57.988 34.783 0.00 0.00 37.30 2.69
3482 3531 4.500035 GGACGCCTTAAAAACAATGGTTGA 60.500 41.667 0.00 0.00 37.30 3.18
3483 3532 3.738791 GGACGCCTTAAAAACAATGGTTG 59.261 43.478 0.00 0.00 37.30 3.77
3484 3533 3.243941 GGGACGCCTTAAAAACAATGGTT 60.244 43.478 0.00 0.00 39.43 3.67
3485 3534 2.297880 GGGACGCCTTAAAAACAATGGT 59.702 45.455 0.00 0.00 0.00 3.55
3486 3535 2.954316 GGGACGCCTTAAAAACAATGG 58.046 47.619 0.00 0.00 0.00 3.16
3503 3552 2.998480 TAAGCGTCCAAGGCGGGA 60.998 61.111 0.00 0.00 33.62 5.14
3504 3553 2.511600 CTAAGCGTCCAAGGCGGG 60.512 66.667 5.39 0.00 33.62 6.13
3505 3554 2.511600 CCTAAGCGTCCAAGGCGG 60.512 66.667 5.39 0.00 33.62 6.13
3506 3555 3.195698 GCCTAAGCGTCCAAGGCG 61.196 66.667 0.00 0.00 45.82 5.52
3516 3565 2.238437 GCCTAAGCGTCGCCTAAGC 61.238 63.158 14.86 7.18 0.00 3.09
3517 3566 4.014065 GCCTAAGCGTCGCCTAAG 57.986 61.111 14.86 8.78 0.00 2.18
3545 3594 0.106918 TATTTGTAAGGCGCTGGGGG 60.107 55.000 7.64 0.00 0.00 5.40
3546 3595 1.608590 CATATTTGTAAGGCGCTGGGG 59.391 52.381 7.64 0.00 0.00 4.96
3547 3596 1.001378 GCATATTTGTAAGGCGCTGGG 60.001 52.381 7.64 0.00 0.00 4.45
3548 3597 1.001378 GGCATATTTGTAAGGCGCTGG 60.001 52.381 7.64 0.00 0.00 4.85
3549 3598 1.001378 GGGCATATTTGTAAGGCGCTG 60.001 52.381 7.64 0.00 34.95 5.18
3550 3599 1.318576 GGGCATATTTGTAAGGCGCT 58.681 50.000 7.64 0.00 34.95 5.92
3551 3600 0.040425 CGGGCATATTTGTAAGGCGC 60.040 55.000 0.00 0.00 0.00 6.53
3552 3601 0.040425 GCGGGCATATTTGTAAGGCG 60.040 55.000 0.00 0.00 0.00 5.52
3553 3602 0.313987 GGCGGGCATATTTGTAAGGC 59.686 55.000 0.00 0.00 0.00 4.35
3554 3603 1.981256 AGGCGGGCATATTTGTAAGG 58.019 50.000 3.78 0.00 0.00 2.69
3555 3604 3.502211 CCTAAGGCGGGCATATTTGTAAG 59.498 47.826 3.78 0.00 0.00 2.34
3556 3605 3.482436 CCTAAGGCGGGCATATTTGTAA 58.518 45.455 3.78 0.00 0.00 2.41
3557 3606 3.134574 CCTAAGGCGGGCATATTTGTA 57.865 47.619 3.78 0.00 0.00 2.41
3558 3607 1.981256 CCTAAGGCGGGCATATTTGT 58.019 50.000 3.78 0.00 0.00 2.83
3630 3679 4.176752 GACCTAAGGCGCTGGGGG 62.177 72.222 7.64 7.91 0.00 5.40
3631 3680 4.530857 CGACCTAAGGCGCTGGGG 62.531 72.222 7.64 7.52 0.00 4.96
3634 3683 2.292794 TAAGGCGACCTAAGGCGCTG 62.293 60.000 20.95 0.00 43.61 5.18
3635 3684 2.056223 TAAGGCGACCTAAGGCGCT 61.056 57.895 20.95 8.24 43.61 5.92
3636 3685 1.881709 GTAAGGCGACCTAAGGCGC 60.882 63.158 15.21 15.21 43.47 6.53
3637 3686 1.227176 GGTAAGGCGACCTAAGGCG 60.227 63.158 4.54 0.00 39.33 5.52
3638 3687 1.227176 CGGTAAGGCGACCTAAGGC 60.227 63.158 9.52 0.00 37.34 4.35
3639 3688 1.227176 GCGGTAAGGCGACCTAAGG 60.227 63.158 9.52 0.00 37.34 2.69
3640 3689 1.227176 GGCGGTAAGGCGACCTAAG 60.227 63.158 9.52 0.00 37.34 2.18
3641 3690 2.894919 GGCGGTAAGGCGACCTAA 59.105 61.111 9.52 0.00 37.34 2.69
3649 3698 6.937436 ATCATAGTTTTTAAGGCGGTAAGG 57.063 37.500 0.00 0.00 0.00 2.69
3650 3699 8.455682 TGAAATCATAGTTTTTAAGGCGGTAAG 58.544 33.333 0.00 0.00 0.00 2.34
3651 3700 8.338072 TGAAATCATAGTTTTTAAGGCGGTAA 57.662 30.769 0.00 0.00 0.00 2.85
3652 3701 7.925043 TGAAATCATAGTTTTTAAGGCGGTA 57.075 32.000 0.00 0.00 0.00 4.02
3653 3702 6.827586 TGAAATCATAGTTTTTAAGGCGGT 57.172 33.333 0.00 0.00 0.00 5.68
3654 3703 7.087639 TGTTGAAATCATAGTTTTTAAGGCGG 58.912 34.615 0.00 0.00 0.00 6.13
3655 3704 8.424731 GTTGTTGAAATCATAGTTTTTAAGGCG 58.575 33.333 0.00 0.00 0.00 5.52
3656 3705 9.255304 TGTTGTTGAAATCATAGTTTTTAAGGC 57.745 29.630 0.00 0.00 0.00 4.35
3661 3710 9.107177 TGCATTGTTGTTGAAATCATAGTTTTT 57.893 25.926 0.00 0.00 0.00 1.94
3662 3711 8.550376 GTGCATTGTTGTTGAAATCATAGTTTT 58.450 29.630 0.00 0.00 0.00 2.43
3663 3712 7.927629 AGTGCATTGTTGTTGAAATCATAGTTT 59.072 29.630 0.00 0.00 0.00 2.66
3664 3713 7.436118 AGTGCATTGTTGTTGAAATCATAGTT 58.564 30.769 0.00 0.00 0.00 2.24
3665 3714 6.985117 AGTGCATTGTTGTTGAAATCATAGT 58.015 32.000 0.00 0.00 0.00 2.12
3666 3715 8.239314 ACTAGTGCATTGTTGTTGAAATCATAG 58.761 33.333 0.00 0.00 0.00 2.23
3667 3716 8.109705 ACTAGTGCATTGTTGTTGAAATCATA 57.890 30.769 0.00 0.00 0.00 2.15
3668 3717 6.985117 ACTAGTGCATTGTTGTTGAAATCAT 58.015 32.000 0.00 0.00 0.00 2.45
3669 3718 6.389830 ACTAGTGCATTGTTGTTGAAATCA 57.610 33.333 0.00 0.00 0.00 2.57
3670 3719 8.795786 TTAACTAGTGCATTGTTGTTGAAATC 57.204 30.769 0.00 0.00 0.00 2.17
3709 3759 7.874528 TGAATATGATGGTAACTAGTGCATCTG 59.125 37.037 0.00 0.00 37.61 2.90
3710 3760 7.966812 TGAATATGATGGTAACTAGTGCATCT 58.033 34.615 0.00 0.00 37.61 2.90
3711 3761 8.499162 GTTGAATATGATGGTAACTAGTGCATC 58.501 37.037 0.00 0.00 37.61 3.91
3788 3838 0.405973 AAAGGGCAGGGAGAACTTCC 59.594 55.000 0.00 0.00 46.00 3.46
3921 3971 7.067494 GTGCTTGAATTTCTCTATACCAATGGT 59.933 37.037 10.81 10.81 40.16 3.55
4019 4069 7.569240 TCCTCTTCACTTTCTTCTTCTCTTTT 58.431 34.615 0.00 0.00 0.00 2.27
4070 4120 3.319198 GGTGAGAACGGAGGGCCA 61.319 66.667 6.18 0.00 0.00 5.36
4079 4129 1.630878 ACTCTTCCCATGGGTGAGAAC 59.369 52.381 38.38 0.00 38.85 3.01
4134 4184 2.024655 AGAGCATGATCAACCCCAATGT 60.025 45.455 14.38 0.00 0.00 2.71
4197 4250 1.630878 ACTAGCCCTCCTGTGAAAAGG 59.369 52.381 0.00 0.00 38.84 3.11
4213 4268 8.239038 TCTATCCTTATGGACAAGACAACTAG 57.761 38.462 0.00 0.00 46.51 2.57
4214 4269 8.603898 TTCTATCCTTATGGACAAGACAACTA 57.396 34.615 9.80 0.00 46.51 2.24
4217 4272 6.070251 TGCTTCTATCCTTATGGACAAGACAA 60.070 38.462 13.27 2.25 46.51 3.18
4246 4301 3.083293 TGCATCTTTATGAACAGCTGCA 58.917 40.909 15.27 4.85 34.49 4.41
4251 4306 5.886992 TGATGCTTGCATCTTTATGAACAG 58.113 37.500 28.44 0.00 34.84 3.16
4284 4339 6.049149 TGCTAATACAAAAGGCTACTGCTAG 58.951 40.000 0.00 0.00 39.59 3.42
4404 4459 0.535335 GCAGTGGTCAAGATCCGGTA 59.465 55.000 0.00 0.00 0.00 4.02
4618 4674 1.265568 CTGAAACTACATACGCGCGT 58.734 50.000 39.05 39.05 0.00 6.01
4624 4680 8.276325 CAGAAACTGAACACTGAAACTACATAC 58.724 37.037 0.00 0.00 32.44 2.39
4657 4713 0.598065 GATGCACCAAGACACCAACC 59.402 55.000 0.00 0.00 0.00 3.77
4730 4786 3.048600 TGCAAGCTCCTTCCTATATGGT 58.951 45.455 0.00 0.00 37.07 3.55
4740 4796 1.000506 CTGCATTTGTGCAAGCTCCTT 59.999 47.619 4.54 0.00 44.88 3.36
4808 4864 4.100035 CAGATTGTCTGCATGACCCTACTA 59.900 45.833 11.99 0.00 44.75 1.82
4809 4865 3.110705 AGATTGTCTGCATGACCCTACT 58.889 45.455 11.99 5.68 44.75 2.57
4810 4866 3.201290 CAGATTGTCTGCATGACCCTAC 58.799 50.000 11.99 4.06 44.75 3.18
4838 4894 8.845227 TCTTGACAACTTTGAGCATATTTACAA 58.155 29.630 0.00 0.00 0.00 2.41
4839 4895 8.389779 TCTTGACAACTTTGAGCATATTTACA 57.610 30.769 0.00 0.00 0.00 2.41
4843 4899 7.458409 ACATCTTGACAACTTTGAGCATATT 57.542 32.000 0.00 0.00 0.00 1.28
4866 4922 8.600625 TCAAAATTCAACATGTCTACGCTATAC 58.399 33.333 0.00 0.00 0.00 1.47
4868 4924 7.609760 TCAAAATTCAACATGTCTACGCTAT 57.390 32.000 0.00 0.00 0.00 2.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.