Multiple sequence alignment - TraesCS1A01G208900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G208900 chr1A 100.000 4787 0 0 1 4787 371083258 371078472 0.000000e+00 8841.0
1 TraesCS1A01G208900 chr1A 90.840 131 10 2 737 866 376995178 376995049 1.770000e-39 174.0
2 TraesCS1A01G208900 chr1D 92.487 3354 159 41 869 4169 298007341 298004028 0.000000e+00 4711.0
3 TraesCS1A01G208900 chr1D 93.638 503 24 6 4289 4787 298004030 298003532 0.000000e+00 745.0
4 TraesCS1A01G208900 chr1D 92.462 199 15 0 534 732 298007545 298007347 7.840000e-73 285.0
5 TraesCS1A01G208900 chr1B 92.378 2414 115 27 869 3249 400585159 400582782 0.000000e+00 3374.0
6 TraesCS1A01G208900 chr1B 94.794 922 42 3 3247 4166 400582701 400581784 0.000000e+00 1432.0
7 TraesCS1A01G208900 chr1B 92.126 254 16 2 4296 4546 400581780 400581528 5.890000e-94 355.0
8 TraesCS1A01G208900 chr1B 91.473 129 8 2 4166 4291 654278555 654278683 1.770000e-39 174.0
9 TraesCS1A01G208900 chr5B 81.304 460 60 19 1036 1490 587793223 587793661 2.740000e-92 350.0
10 TraesCS1A01G208900 chr5B 91.071 168 13 2 370 535 341533896 341533729 4.820000e-55 226.0
11 TraesCS1A01G208900 chr5B 89.759 166 16 1 367 531 712462201 712462366 1.350000e-50 211.0
12 TraesCS1A01G208900 chr5B 86.066 122 16 1 2165 2286 587794120 587794240 3.890000e-26 130.0
13 TraesCS1A01G208900 chr5B 87.273 55 3 1 300 354 562887888 562887838 5.170000e-05 60.2
14 TraesCS1A01G208900 chr5A 80.430 465 65 19 1036 1496 598526021 598526463 9.930000e-87 331.0
15 TraesCS1A01G208900 chr5A 86.486 185 22 3 2400 2582 598527089 598527272 2.920000e-47 200.0
16 TraesCS1A01G208900 chr5A 89.231 130 12 2 737 866 330283824 330283697 1.380000e-35 161.0
17 TraesCS1A01G208900 chr5A 86.066 122 16 1 2165 2286 598526907 598527027 3.890000e-26 130.0
18 TraesCS1A01G208900 chr5D 77.754 463 70 19 1033 1490 480036945 480037379 2.210000e-63 254.0
19 TraesCS1A01G208900 chr5D 90.741 162 14 1 371 531 53583077 53583238 1.040000e-51 215.0
20 TraesCS1A01G208900 chr5D 94.167 120 7 0 4171 4290 138565670 138565551 2.940000e-42 183.0
21 TraesCS1A01G208900 chr5D 93.333 120 8 0 4171 4290 312934346 312934227 1.370000e-40 178.0
22 TraesCS1A01G208900 chr5D 90.000 100 10 0 1966 2065 480037682 480037781 3.890000e-26 130.0
23 TraesCS1A01G208900 chr2D 91.176 170 12 3 367 534 336511130 336511298 1.340000e-55 228.0
24 TraesCS1A01G208900 chr6B 91.411 163 13 1 370 531 128931886 128931724 6.240000e-54 222.0
25 TraesCS1A01G208900 chr6B 85.455 55 4 1 300 354 199590390 199590340 2.000000e-03 54.7
26 TraesCS1A01G208900 chr6D 90.244 164 16 0 368 531 431160831 431160668 1.040000e-51 215.0
27 TraesCS1A01G208900 chr6D 87.273 55 3 1 300 354 66993069 66993119 5.170000e-05 60.2
28 TraesCS1A01G208900 chrUn 88.953 172 17 2 363 533 34210746 34210916 1.350000e-50 211.0
29 TraesCS1A01G208900 chr2A 88.439 173 18 2 363 534 12003441 12003270 1.750000e-49 207.0
30 TraesCS1A01G208900 chr2A 96.460 113 4 0 4171 4283 609453825 609453937 2.270000e-43 187.0
31 TraesCS1A01G208900 chr2A 92.063 126 10 0 4158 4283 78848809 78848934 1.370000e-40 178.0
32 TraesCS1A01G208900 chr2A 89.313 131 13 1 737 866 35678427 35678297 3.830000e-36 163.0
33 TraesCS1A01G208900 chr2A 88.806 134 13 2 737 869 443921048 443920916 3.830000e-36 163.0
34 TraesCS1A01G208900 chr2A 85.455 55 4 2 297 351 152342488 152342438 2.000000e-03 54.7
35 TraesCS1A01G208900 chr4D 88.068 176 16 5 371 542 3590635 3590461 2.260000e-48 204.0
36 TraesCS1A01G208900 chr3B 96.460 113 4 0 4171 4283 558103357 558103245 2.270000e-43 187.0
37 TraesCS1A01G208900 chr4A 93.496 123 8 0 4167 4289 187572349 187572227 2.940000e-42 183.0
38 TraesCS1A01G208900 chr4A 83.099 71 10 2 15 84 46132004 46132073 4.000000e-06 63.9
39 TraesCS1A01G208900 chr4A 87.273 55 3 2 297 351 107110709 107110759 5.170000e-05 60.2
40 TraesCS1A01G208900 chr3A 91.473 129 9 2 4171 4298 22891705 22891578 4.920000e-40 176.0
41 TraesCS1A01G208900 chr3A 90.076 131 12 1 737 866 16812383 16812253 8.240000e-38 169.0
42 TraesCS1A01G208900 chr3A 89.394 132 12 1 737 866 16861070 16860939 1.070000e-36 165.0
43 TraesCS1A01G208900 chr6A 90.840 131 10 2 737 866 617403077 617402948 1.770000e-39 174.0
44 TraesCS1A01G208900 chr6A 90.000 130 11 2 737 866 471195296 471195169 2.960000e-37 167.0
45 TraesCS1A01G208900 chr6A 89.394 132 12 1 737 866 76435814 76435683 1.070000e-36 165.0
46 TraesCS1A01G208900 chr7B 92.308 117 9 0 4167 4283 726876377 726876261 2.960000e-37 167.0
47 TraesCS1A01G208900 chr7B 87.273 55 3 1 300 354 233661323 233661273 5.170000e-05 60.2
48 TraesCS1A01G208900 chr3D 88.136 59 3 1 296 354 33460461 33460407 3.090000e-07 67.6
49 TraesCS1A01G208900 chr3D 88.000 50 2 1 300 349 4990841 4990796 6.690000e-04 56.5
50 TraesCS1A01G208900 chr4B 89.583 48 1 1 301 348 88377533 88377490 1.860000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G208900 chr1A 371078472 371083258 4786 True 8841.000000 8841 100.000000 1 4787 1 chr1A.!!$R1 4786
1 TraesCS1A01G208900 chr1D 298003532 298007545 4013 True 1913.666667 4711 92.862333 534 4787 3 chr1D.!!$R1 4253
2 TraesCS1A01G208900 chr1B 400581528 400585159 3631 True 1720.333333 3374 93.099333 869 4546 3 chr1B.!!$R1 3677
3 TraesCS1A01G208900 chr5B 587793223 587794240 1017 False 240.000000 350 83.685000 1036 2286 2 chr5B.!!$F2 1250
4 TraesCS1A01G208900 chr5A 598526021 598527272 1251 False 220.333333 331 84.327333 1036 2582 3 chr5A.!!$F1 1546

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
630 631 0.248498 GACGAACGCCGATGAGATCA 60.248 55.0 4.79 0.00 41.76 2.92 F
1554 1632 0.041312 TTTCTTCAGCAGAAACGCGC 60.041 50.0 5.73 0.00 45.12 6.86 F
1713 1797 0.097674 GCACATGCATGTCTCCGTTC 59.902 55.0 29.23 8.84 39.39 3.95 F
3290 3498 0.677842 ACGAGCGGGTGTAAAGTTCT 59.322 50.0 0.00 0.00 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2525 2635 0.723414 CGTCGCTCATGCATTTCACT 59.277 50.000 0.00 0.00 39.64 3.41 R
2895 3017 3.760684 GTGGTTCAATGCTCTGAAAGGAT 59.239 43.478 3.07 0.00 37.08 3.24 R
3603 3811 1.298157 CGCAGTCGATTTCTTGGGCA 61.298 55.000 0.00 0.00 38.10 5.36 R
4269 4480 0.174845 TACATGCTCCTTCCGTTCGG 59.825 55.000 4.74 4.74 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 7.573968 AGTATAACATGGAGAGAATTTTGGC 57.426 36.000 0.00 0.00 0.00 4.52
42 43 7.118723 AGTATAACATGGAGAGAATTTTGGCA 58.881 34.615 0.00 0.00 0.00 4.92
43 44 6.855763 ATAACATGGAGAGAATTTTGGCAA 57.144 33.333 0.00 0.00 0.00 4.52
44 45 5.549742 AACATGGAGAGAATTTTGGCAAA 57.450 34.783 8.93 8.93 0.00 3.68
45 46 4.886579 ACATGGAGAGAATTTTGGCAAAC 58.113 39.130 13.10 1.21 0.00 2.93
46 47 4.344679 ACATGGAGAGAATTTTGGCAAACA 59.655 37.500 13.10 5.14 0.00 2.83
47 48 5.012354 ACATGGAGAGAATTTTGGCAAACAT 59.988 36.000 13.10 7.34 0.00 2.71
48 49 5.549742 TGGAGAGAATTTTGGCAAACATT 57.450 34.783 13.10 14.59 0.00 2.71
49 50 5.927819 TGGAGAGAATTTTGGCAAACATTT 58.072 33.333 13.10 6.91 0.00 2.32
50 51 7.060383 TGGAGAGAATTTTGGCAAACATTTA 57.940 32.000 13.10 0.00 0.00 1.40
51 52 7.678837 TGGAGAGAATTTTGGCAAACATTTAT 58.321 30.769 13.10 4.37 0.00 1.40
52 53 8.156165 TGGAGAGAATTTTGGCAAACATTTATT 58.844 29.630 13.10 9.27 0.00 1.40
53 54 9.002600 GGAGAGAATTTTGGCAAACATTTATTT 57.997 29.630 13.10 0.02 0.00 1.40
62 63 8.893219 TTGGCAAACATTTATTTACACAATCA 57.107 26.923 0.00 0.00 0.00 2.57
63 64 8.304202 TGGCAAACATTTATTTACACAATCAC 57.696 30.769 0.00 0.00 0.00 3.06
64 65 7.928167 TGGCAAACATTTATTTACACAATCACA 59.072 29.630 0.00 0.00 0.00 3.58
65 66 8.220434 GGCAAACATTTATTTACACAATCACAC 58.780 33.333 0.00 0.00 0.00 3.82
66 67 8.977505 GCAAACATTTATTTACACAATCACACT 58.022 29.630 0.00 0.00 0.00 3.55
86 87 8.498192 CACACTAATATGTGCAGATAAATTGC 57.502 34.615 7.74 0.00 43.29 3.56
87 88 7.321984 CACACTAATATGTGCAGATAAATTGCG 59.678 37.037 7.74 0.00 43.29 4.85
88 89 6.798476 CACTAATATGTGCAGATAAATTGCGG 59.202 38.462 7.74 0.00 44.40 5.69
89 90 4.771590 ATATGTGCAGATAAATTGCGGG 57.228 40.909 7.74 0.00 44.40 6.13
90 91 2.121291 TGTGCAGATAAATTGCGGGA 57.879 45.000 0.00 0.00 44.40 5.14
91 92 2.653726 TGTGCAGATAAATTGCGGGAT 58.346 42.857 0.00 0.00 44.40 3.85
92 93 3.814625 TGTGCAGATAAATTGCGGGATA 58.185 40.909 0.00 0.00 44.40 2.59
93 94 4.203226 TGTGCAGATAAATTGCGGGATAA 58.797 39.130 0.00 0.00 44.40 1.75
94 95 4.036262 TGTGCAGATAAATTGCGGGATAAC 59.964 41.667 0.00 0.00 44.40 1.89
95 96 3.249799 TGCAGATAAATTGCGGGATAACG 59.750 43.478 0.00 0.00 44.40 3.18
96 97 3.250040 GCAGATAAATTGCGGGATAACGT 59.750 43.478 0.00 0.00 35.98 3.99
97 98 4.449743 GCAGATAAATTGCGGGATAACGTA 59.550 41.667 0.00 0.00 35.98 3.57
98 99 5.614013 GCAGATAAATTGCGGGATAACGTAC 60.614 44.000 0.00 0.00 35.98 3.67
99 100 5.694910 CAGATAAATTGCGGGATAACGTACT 59.305 40.000 0.00 0.00 35.98 2.73
100 101 6.864685 CAGATAAATTGCGGGATAACGTACTA 59.135 38.462 0.00 0.00 35.98 1.82
101 102 7.383029 CAGATAAATTGCGGGATAACGTACTAA 59.617 37.037 0.00 0.00 35.98 2.24
102 103 7.927629 AGATAAATTGCGGGATAACGTACTAAA 59.072 33.333 0.00 0.00 35.98 1.85
103 104 6.740411 AAATTGCGGGATAACGTACTAAAA 57.260 33.333 0.00 0.00 35.98 1.52
104 105 6.930667 AATTGCGGGATAACGTACTAAAAT 57.069 33.333 0.00 0.00 35.98 1.82
105 106 8.436046 AAATTGCGGGATAACGTACTAAAATA 57.564 30.769 0.00 0.00 35.98 1.40
106 107 8.611654 AATTGCGGGATAACGTACTAAAATAT 57.388 30.769 0.00 0.00 35.98 1.28
107 108 8.611654 ATTGCGGGATAACGTACTAAAATATT 57.388 30.769 0.00 0.00 35.98 1.28
108 109 8.436046 TTGCGGGATAACGTACTAAAATATTT 57.564 30.769 0.00 0.00 35.98 1.40
109 110 9.539825 TTGCGGGATAACGTACTAAAATATTTA 57.460 29.630 0.01 0.00 35.98 1.40
110 111 9.709495 TGCGGGATAACGTACTAAAATATTTAT 57.291 29.630 0.01 0.00 35.98 1.40
136 137 4.856498 CGATGAAACGCATGCAATTATC 57.144 40.909 19.57 12.66 37.34 1.75
137 138 4.281264 CGATGAAACGCATGCAATTATCA 58.719 39.130 19.57 13.86 37.34 2.15
138 139 4.913345 CGATGAAACGCATGCAATTATCAT 59.087 37.500 19.57 17.67 37.34 2.45
139 140 5.058856 CGATGAAACGCATGCAATTATCATC 59.941 40.000 24.42 24.42 37.34 2.92
140 141 5.246145 TGAAACGCATGCAATTATCATCA 57.754 34.783 19.57 8.79 0.00 3.07
141 142 5.834169 TGAAACGCATGCAATTATCATCAT 58.166 33.333 19.57 0.00 0.00 2.45
142 143 6.968250 TGAAACGCATGCAATTATCATCATA 58.032 32.000 19.57 0.00 0.00 2.15
143 144 7.595604 TGAAACGCATGCAATTATCATCATAT 58.404 30.769 19.57 0.00 0.00 1.78
144 145 7.751793 TGAAACGCATGCAATTATCATCATATC 59.248 33.333 19.57 3.35 0.00 1.63
145 146 6.997239 ACGCATGCAATTATCATCATATCT 57.003 33.333 19.57 0.00 0.00 1.98
146 147 8.496707 AACGCATGCAATTATCATCATATCTA 57.503 30.769 19.57 0.00 0.00 1.98
147 148 8.496707 ACGCATGCAATTATCATCATATCTAA 57.503 30.769 19.57 0.00 0.00 2.10
148 149 9.117183 ACGCATGCAATTATCATCATATCTAAT 57.883 29.630 19.57 0.00 0.00 1.73
167 168 7.801716 TCTAATACCAACATCAACATTAGCC 57.198 36.000 0.00 0.00 0.00 3.93
168 169 7.342581 TCTAATACCAACATCAACATTAGCCA 58.657 34.615 0.00 0.00 0.00 4.75
169 170 6.849085 AATACCAACATCAACATTAGCCAA 57.151 33.333 0.00 0.00 0.00 4.52
170 171 6.849085 ATACCAACATCAACATTAGCCAAA 57.151 33.333 0.00 0.00 0.00 3.28
171 172 5.138125 ACCAACATCAACATTAGCCAAAG 57.862 39.130 0.00 0.00 0.00 2.77
172 173 4.832266 ACCAACATCAACATTAGCCAAAGA 59.168 37.500 0.00 0.00 0.00 2.52
173 174 5.304101 ACCAACATCAACATTAGCCAAAGAA 59.696 36.000 0.00 0.00 0.00 2.52
174 175 6.014327 ACCAACATCAACATTAGCCAAAGAAT 60.014 34.615 0.00 0.00 0.00 2.40
175 176 6.875195 CCAACATCAACATTAGCCAAAGAATT 59.125 34.615 0.00 0.00 0.00 2.17
176 177 8.034215 CCAACATCAACATTAGCCAAAGAATTA 58.966 33.333 0.00 0.00 0.00 1.40
177 178 9.590451 CAACATCAACATTAGCCAAAGAATTAT 57.410 29.630 0.00 0.00 0.00 1.28
180 181 9.683069 CATCAACATTAGCCAAAGAATTATACC 57.317 33.333 0.00 0.00 0.00 2.73
181 182 8.232913 TCAACATTAGCCAAAGAATTATACCC 57.767 34.615 0.00 0.00 0.00 3.69
182 183 8.058847 TCAACATTAGCCAAAGAATTATACCCT 58.941 33.333 0.00 0.00 0.00 4.34
183 184 9.349713 CAACATTAGCCAAAGAATTATACCCTA 57.650 33.333 0.00 0.00 0.00 3.53
184 185 9.930158 AACATTAGCCAAAGAATTATACCCTAA 57.070 29.630 0.00 0.00 0.00 2.69
185 186 9.350951 ACATTAGCCAAAGAATTATACCCTAAC 57.649 33.333 0.00 0.00 0.00 2.34
186 187 9.574516 CATTAGCCAAAGAATTATACCCTAACT 57.425 33.333 0.00 0.00 0.00 2.24
189 190 8.333226 AGCCAAAGAATTATACCCTAACTACT 57.667 34.615 0.00 0.00 0.00 2.57
190 191 9.443365 AGCCAAAGAATTATACCCTAACTACTA 57.557 33.333 0.00 0.00 0.00 1.82
202 203 7.989947 ACCCTAACTACTATTGATTTCCTGA 57.010 36.000 0.00 0.00 0.00 3.86
203 204 8.568617 ACCCTAACTACTATTGATTTCCTGAT 57.431 34.615 0.00 0.00 0.00 2.90
204 205 9.670442 ACCCTAACTACTATTGATTTCCTGATA 57.330 33.333 0.00 0.00 0.00 2.15
205 206 9.930693 CCCTAACTACTATTGATTTCCTGATAC 57.069 37.037 0.00 0.00 0.00 2.24
206 207 9.930693 CCTAACTACTATTGATTTCCTGATACC 57.069 37.037 0.00 0.00 0.00 2.73
207 208 9.627395 CTAACTACTATTGATTTCCTGATACCG 57.373 37.037 0.00 0.00 0.00 4.02
208 209 6.456501 ACTACTATTGATTTCCTGATACCGC 58.543 40.000 0.00 0.00 0.00 5.68
209 210 5.552870 ACTATTGATTTCCTGATACCGCT 57.447 39.130 0.00 0.00 0.00 5.52
210 211 5.930135 ACTATTGATTTCCTGATACCGCTT 58.070 37.500 0.00 0.00 0.00 4.68
211 212 7.062749 ACTATTGATTTCCTGATACCGCTTA 57.937 36.000 0.00 0.00 0.00 3.09
212 213 7.680730 ACTATTGATTTCCTGATACCGCTTAT 58.319 34.615 0.00 0.00 0.00 1.73
213 214 8.157476 ACTATTGATTTCCTGATACCGCTTATT 58.843 33.333 0.00 0.00 0.00 1.40
214 215 6.618287 TTGATTTCCTGATACCGCTTATTG 57.382 37.500 0.00 0.00 0.00 1.90
215 216 5.680619 TGATTTCCTGATACCGCTTATTGT 58.319 37.500 0.00 0.00 0.00 2.71
216 217 5.527214 TGATTTCCTGATACCGCTTATTGTG 59.473 40.000 0.00 0.00 0.00 3.33
217 218 4.746535 TTCCTGATACCGCTTATTGTGA 57.253 40.909 0.00 0.00 0.00 3.58
218 219 4.746535 TCCTGATACCGCTTATTGTGAA 57.253 40.909 0.00 0.00 0.00 3.18
219 220 4.693283 TCCTGATACCGCTTATTGTGAAG 58.307 43.478 0.00 0.00 0.00 3.02
220 221 3.809832 CCTGATACCGCTTATTGTGAAGG 59.190 47.826 0.00 0.00 0.00 3.46
221 222 4.442893 CCTGATACCGCTTATTGTGAAGGA 60.443 45.833 0.00 0.00 0.00 3.36
222 223 5.290493 TGATACCGCTTATTGTGAAGGAT 57.710 39.130 0.00 0.00 0.00 3.24
223 224 6.413783 TGATACCGCTTATTGTGAAGGATA 57.586 37.500 0.00 0.00 0.00 2.59
224 225 7.004555 TGATACCGCTTATTGTGAAGGATAT 57.995 36.000 0.00 0.00 0.00 1.63
225 226 6.873605 TGATACCGCTTATTGTGAAGGATATG 59.126 38.462 0.00 0.00 0.00 1.78
226 227 5.290493 ACCGCTTATTGTGAAGGATATGA 57.710 39.130 0.00 0.00 0.00 2.15
227 228 5.057149 ACCGCTTATTGTGAAGGATATGAC 58.943 41.667 0.00 0.00 0.00 3.06
228 229 5.163301 ACCGCTTATTGTGAAGGATATGACT 60.163 40.000 0.00 0.00 0.00 3.41
229 230 6.041637 ACCGCTTATTGTGAAGGATATGACTA 59.958 38.462 0.00 0.00 0.00 2.59
230 231 7.099764 CCGCTTATTGTGAAGGATATGACTAT 58.900 38.462 0.00 0.00 0.00 2.12
231 232 7.604164 CCGCTTATTGTGAAGGATATGACTATT 59.396 37.037 0.00 0.00 0.00 1.73
232 233 9.639601 CGCTTATTGTGAAGGATATGACTATTA 57.360 33.333 0.00 0.00 0.00 0.98
256 257 9.545105 TTAGTTAAATAAAGTCACCGAAGTTCA 57.455 29.630 3.32 0.00 0.00 3.18
257 258 8.441312 AGTTAAATAAAGTCACCGAAGTTCAA 57.559 30.769 3.32 0.00 0.00 2.69
258 259 8.895737 AGTTAAATAAAGTCACCGAAGTTCAAA 58.104 29.630 3.32 0.00 0.00 2.69
259 260 9.505995 GTTAAATAAAGTCACCGAAGTTCAAAA 57.494 29.630 3.32 0.00 0.00 2.44
266 267 9.673454 AAAGTCACCGAAGTTCAAAAATATTAC 57.327 29.630 3.32 0.00 0.00 1.89
267 268 8.617290 AGTCACCGAAGTTCAAAAATATTACT 57.383 30.769 3.32 0.00 0.00 2.24
268 269 9.063615 AGTCACCGAAGTTCAAAAATATTACTT 57.936 29.630 3.32 1.09 0.00 2.24
269 270 9.326339 GTCACCGAAGTTCAAAAATATTACTTC 57.674 33.333 14.25 14.25 40.62 3.01
270 271 8.508875 TCACCGAAGTTCAAAAATATTACTTCC 58.491 33.333 16.83 5.56 40.83 3.46
271 272 8.512138 CACCGAAGTTCAAAAATATTACTTCCT 58.488 33.333 16.83 5.40 40.83 3.36
272 273 9.074576 ACCGAAGTTCAAAAATATTACTTCCTT 57.925 29.630 16.83 6.44 40.83 3.36
273 274 9.556030 CCGAAGTTCAAAAATATTACTTCCTTC 57.444 33.333 16.83 10.71 40.83 3.46
336 337 9.807921 AATCTAAGACAAGAGTTTATTTTGGGA 57.192 29.630 0.00 0.00 0.00 4.37
337 338 9.981460 ATCTAAGACAAGAGTTTATTTTGGGAT 57.019 29.630 0.00 0.00 0.00 3.85
338 339 9.231297 TCTAAGACAAGAGTTTATTTTGGGATG 57.769 33.333 0.00 0.00 0.00 3.51
339 340 6.840780 AGACAAGAGTTTATTTTGGGATGG 57.159 37.500 0.00 0.00 0.00 3.51
340 341 6.552008 AGACAAGAGTTTATTTTGGGATGGA 58.448 36.000 0.00 0.00 0.00 3.41
341 342 6.660949 AGACAAGAGTTTATTTTGGGATGGAG 59.339 38.462 0.00 0.00 0.00 3.86
342 343 6.552008 ACAAGAGTTTATTTTGGGATGGAGA 58.448 36.000 0.00 0.00 0.00 3.71
343 344 6.660949 ACAAGAGTTTATTTTGGGATGGAGAG 59.339 38.462 0.00 0.00 0.00 3.20
344 345 6.642733 AGAGTTTATTTTGGGATGGAGAGA 57.357 37.500 0.00 0.00 0.00 3.10
345 346 6.657875 AGAGTTTATTTTGGGATGGAGAGAG 58.342 40.000 0.00 0.00 0.00 3.20
346 347 6.216456 AGAGTTTATTTTGGGATGGAGAGAGT 59.784 38.462 0.00 0.00 0.00 3.24
347 348 7.403231 AGAGTTTATTTTGGGATGGAGAGAGTA 59.597 37.037 0.00 0.00 0.00 2.59
348 349 7.569240 AGTTTATTTTGGGATGGAGAGAGTAG 58.431 38.462 0.00 0.00 0.00 2.57
349 350 7.182930 AGTTTATTTTGGGATGGAGAGAGTAGT 59.817 37.037 0.00 0.00 0.00 2.73
350 351 7.510675 TTATTTTGGGATGGAGAGAGTAGTT 57.489 36.000 0.00 0.00 0.00 2.24
351 352 5.843019 TTTTGGGATGGAGAGAGTAGTTT 57.157 39.130 0.00 0.00 0.00 2.66
352 353 6.945636 TTTTGGGATGGAGAGAGTAGTTTA 57.054 37.500 0.00 0.00 0.00 2.01
353 354 7.510675 TTTTGGGATGGAGAGAGTAGTTTAT 57.489 36.000 0.00 0.00 0.00 1.40
354 355 8.618240 TTTTGGGATGGAGAGAGTAGTTTATA 57.382 34.615 0.00 0.00 0.00 0.98
355 356 8.798975 TTTGGGATGGAGAGAGTAGTTTATAT 57.201 34.615 0.00 0.00 0.00 0.86
356 357 8.423906 TTGGGATGGAGAGAGTAGTTTATATC 57.576 38.462 0.00 0.00 0.00 1.63
357 358 7.770662 TGGGATGGAGAGAGTAGTTTATATCT 58.229 38.462 0.00 0.00 0.00 1.98
358 359 8.235230 TGGGATGGAGAGAGTAGTTTATATCTT 58.765 37.037 0.00 0.00 0.00 2.40
359 360 8.527810 GGGATGGAGAGAGTAGTTTATATCTTG 58.472 40.741 0.00 0.00 0.00 3.02
360 361 8.032451 GGATGGAGAGAGTAGTTTATATCTTGC 58.968 40.741 0.00 0.00 0.00 4.01
361 362 7.291411 TGGAGAGAGTAGTTTATATCTTGCC 57.709 40.000 0.00 0.00 0.00 4.52
362 363 7.069986 TGGAGAGAGTAGTTTATATCTTGCCT 58.930 38.462 0.00 0.00 0.00 4.75
363 364 8.225416 TGGAGAGAGTAGTTTATATCTTGCCTA 58.775 37.037 0.00 0.00 0.00 3.93
364 365 9.080097 GGAGAGAGTAGTTTATATCTTGCCTAA 57.920 37.037 0.00 0.00 0.00 2.69
380 381 7.837863 TCTTGCCTAATATTATACTCCCTTCG 58.162 38.462 0.00 0.00 0.00 3.79
381 382 7.453752 TCTTGCCTAATATTATACTCCCTTCGT 59.546 37.037 0.00 0.00 0.00 3.85
382 383 7.549147 TGCCTAATATTATACTCCCTTCGTT 57.451 36.000 0.00 0.00 0.00 3.85
383 384 7.609056 TGCCTAATATTATACTCCCTTCGTTC 58.391 38.462 0.00 0.00 0.00 3.95
384 385 7.040494 GCCTAATATTATACTCCCTTCGTTCC 58.960 42.308 0.00 0.00 0.00 3.62
385 386 7.093421 GCCTAATATTATACTCCCTTCGTTCCT 60.093 40.741 0.00 0.00 0.00 3.36
386 387 9.471702 CCTAATATTATACTCCCTTCGTTCCTA 57.528 37.037 0.00 0.00 0.00 2.94
395 396 7.672122 ACTCCCTTCGTTCCTAAATATAACT 57.328 36.000 0.00 0.00 0.00 2.24
396 397 7.724287 ACTCCCTTCGTTCCTAAATATAACTC 58.276 38.462 0.00 0.00 0.00 3.01
397 398 7.564292 ACTCCCTTCGTTCCTAAATATAACTCT 59.436 37.037 0.00 0.00 0.00 3.24
398 399 8.315220 TCCCTTCGTTCCTAAATATAACTCTT 57.685 34.615 0.00 0.00 0.00 2.85
399 400 8.765517 TCCCTTCGTTCCTAAATATAACTCTTT 58.234 33.333 0.00 0.00 0.00 2.52
400 401 9.392259 CCCTTCGTTCCTAAATATAACTCTTTT 57.608 33.333 0.00 0.00 0.00 2.27
428 429 9.314321 AGAGATTTCATTACAAACTACATACGG 57.686 33.333 0.00 0.00 0.00 4.02
429 430 9.309516 GAGATTTCATTACAAACTACATACGGA 57.690 33.333 0.00 0.00 0.00 4.69
430 431 9.832445 AGATTTCATTACAAACTACATACGGAT 57.168 29.630 0.00 0.00 0.00 4.18
431 432 9.864034 GATTTCATTACAAACTACATACGGATG 57.136 33.333 5.94 5.94 39.16 3.51
433 434 9.872721 TTTCATTACAAACTACATACGGATGTA 57.127 29.630 19.32 19.32 44.77 2.29
462 463 8.635877 AGACATATTTTCGAGTGTAGATTCAC 57.364 34.615 0.00 0.00 38.46 3.18
474 475 7.516198 AGTGTAGATTCACTCATTTTGCTTT 57.484 32.000 0.00 0.00 44.07 3.51
475 476 7.365741 AGTGTAGATTCACTCATTTTGCTTTG 58.634 34.615 0.00 0.00 44.07 2.77
476 477 7.013655 AGTGTAGATTCACTCATTTTGCTTTGT 59.986 33.333 0.00 0.00 44.07 2.83
477 478 8.289618 GTGTAGATTCACTCATTTTGCTTTGTA 58.710 33.333 0.00 0.00 35.68 2.41
478 479 9.013229 TGTAGATTCACTCATTTTGCTTTGTAT 57.987 29.630 0.00 0.00 0.00 2.29
479 480 9.282247 GTAGATTCACTCATTTTGCTTTGTATG 57.718 33.333 0.00 0.00 0.00 2.39
480 481 7.889469 AGATTCACTCATTTTGCTTTGTATGT 58.111 30.769 0.00 0.00 0.00 2.29
481 482 9.013229 AGATTCACTCATTTTGCTTTGTATGTA 57.987 29.630 0.00 0.00 0.00 2.29
482 483 9.282247 GATTCACTCATTTTGCTTTGTATGTAG 57.718 33.333 0.00 0.00 0.00 2.74
483 484 7.744087 TCACTCATTTTGCTTTGTATGTAGT 57.256 32.000 0.00 0.00 0.00 2.73
484 485 7.806690 TCACTCATTTTGCTTTGTATGTAGTC 58.193 34.615 0.00 0.00 0.00 2.59
485 486 7.443879 TCACTCATTTTGCTTTGTATGTAGTCA 59.556 33.333 0.00 0.00 0.00 3.41
486 487 8.239314 CACTCATTTTGCTTTGTATGTAGTCAT 58.761 33.333 0.00 0.00 38.00 3.06
487 488 9.448438 ACTCATTTTGCTTTGTATGTAGTCATA 57.552 29.630 0.00 0.00 35.70 2.15
574 575 7.241663 TGTCTAATATTAACGGACATTGCAC 57.758 36.000 10.45 0.00 32.91 4.57
576 577 3.602390 ATATTAACGGACATTGCACGC 57.398 42.857 0.00 0.00 0.00 5.34
586 587 1.066757 ACATTGCACGCACACAATTGA 59.933 42.857 13.59 0.00 34.32 2.57
587 588 2.288334 ACATTGCACGCACACAATTGAT 60.288 40.909 13.59 0.00 34.32 2.57
590 591 1.468127 TGCACGCACACAATTGATAGG 59.532 47.619 13.59 1.18 0.00 2.57
593 594 3.365868 GCACGCACACAATTGATAGGAAA 60.366 43.478 13.59 0.00 0.00 3.13
595 596 5.401550 CACGCACACAATTGATAGGAAAAT 58.598 37.500 13.59 0.00 0.00 1.82
611 612 1.555967 AAATCAACCATTCCACCCCG 58.444 50.000 0.00 0.00 0.00 5.73
630 631 0.248498 GACGAACGCCGATGAGATCA 60.248 55.000 4.79 0.00 41.76 2.92
644 645 1.069765 GATCATCCGCACCCATCGT 59.930 57.895 0.00 0.00 0.00 3.73
735 736 4.374702 CACAGCGCACACGAAGCC 62.375 66.667 11.47 0.00 43.93 4.35
736 737 4.908687 ACAGCGCACACGAAGCCA 62.909 61.111 11.47 0.00 43.93 4.75
737 738 3.425713 CAGCGCACACGAAGCCAT 61.426 61.111 11.47 0.00 43.93 4.40
738 739 3.121030 AGCGCACACGAAGCCATC 61.121 61.111 11.47 0.00 43.93 3.51
739 740 3.422303 GCGCACACGAAGCCATCA 61.422 61.111 0.30 0.00 43.93 3.07
740 741 2.753966 GCGCACACGAAGCCATCAT 61.754 57.895 0.30 0.00 43.93 2.45
741 742 1.428370 GCGCACACGAAGCCATCATA 61.428 55.000 0.30 0.00 43.93 2.15
742 743 1.006086 CGCACACGAAGCCATCATAA 58.994 50.000 0.00 0.00 43.93 1.90
743 744 1.396648 CGCACACGAAGCCATCATAAA 59.603 47.619 0.00 0.00 43.93 1.40
744 745 2.537529 CGCACACGAAGCCATCATAAAG 60.538 50.000 0.00 0.00 43.93 1.85
745 746 2.792542 GCACACGAAGCCATCATAAAGC 60.793 50.000 0.00 0.00 0.00 3.51
746 747 2.419673 CACACGAAGCCATCATAAAGCA 59.580 45.455 0.00 0.00 0.00 3.91
747 748 3.065786 CACACGAAGCCATCATAAAGCAT 59.934 43.478 0.00 0.00 0.00 3.79
748 749 3.313526 ACACGAAGCCATCATAAAGCATC 59.686 43.478 0.00 0.00 0.00 3.91
749 750 3.562973 CACGAAGCCATCATAAAGCATCT 59.437 43.478 0.00 0.00 0.00 2.90
750 751 4.751600 CACGAAGCCATCATAAAGCATCTA 59.248 41.667 0.00 0.00 0.00 1.98
751 752 5.237127 CACGAAGCCATCATAAAGCATCTAA 59.763 40.000 0.00 0.00 0.00 2.10
752 753 6.000219 ACGAAGCCATCATAAAGCATCTAAT 59.000 36.000 0.00 0.00 0.00 1.73
753 754 6.148480 ACGAAGCCATCATAAAGCATCTAATC 59.852 38.462 0.00 0.00 0.00 1.75
754 755 6.370994 CGAAGCCATCATAAAGCATCTAATCT 59.629 38.462 0.00 0.00 0.00 2.40
755 756 7.412781 CGAAGCCATCATAAAGCATCTAATCTC 60.413 40.741 0.00 0.00 0.00 2.75
756 757 7.018487 AGCCATCATAAAGCATCTAATCTCT 57.982 36.000 0.00 0.00 0.00 3.10
757 758 7.460071 AGCCATCATAAAGCATCTAATCTCTT 58.540 34.615 0.00 0.00 0.00 2.85
758 759 7.607223 AGCCATCATAAAGCATCTAATCTCTTC 59.393 37.037 0.00 0.00 0.00 2.87
759 760 7.607223 GCCATCATAAAGCATCTAATCTCTTCT 59.393 37.037 0.00 0.00 0.00 2.85
760 761 9.153721 CCATCATAAAGCATCTAATCTCTTCTC 57.846 37.037 0.00 0.00 0.00 2.87
761 762 9.153721 CATCATAAAGCATCTAATCTCTTCTCC 57.846 37.037 0.00 0.00 0.00 3.71
762 763 7.675062 TCATAAAGCATCTAATCTCTTCTCCC 58.325 38.462 0.00 0.00 0.00 4.30
763 764 4.972751 AAGCATCTAATCTCTTCTCCCC 57.027 45.455 0.00 0.00 0.00 4.81
764 765 4.212070 AGCATCTAATCTCTTCTCCCCT 57.788 45.455 0.00 0.00 0.00 4.79
765 766 5.346782 AGCATCTAATCTCTTCTCCCCTA 57.653 43.478 0.00 0.00 0.00 3.53
766 767 5.721225 AGCATCTAATCTCTTCTCCCCTAA 58.279 41.667 0.00 0.00 0.00 2.69
767 768 6.330218 AGCATCTAATCTCTTCTCCCCTAAT 58.670 40.000 0.00 0.00 0.00 1.73
768 769 6.791969 AGCATCTAATCTCTTCTCCCCTAATT 59.208 38.462 0.00 0.00 0.00 1.40
769 770 7.294482 AGCATCTAATCTCTTCTCCCCTAATTT 59.706 37.037 0.00 0.00 0.00 1.82
770 771 7.941790 GCATCTAATCTCTTCTCCCCTAATTTT 59.058 37.037 0.00 0.00 0.00 1.82
776 777 9.426534 AATCTCTTCTCCCCTAATTTTAAATGG 57.573 33.333 0.00 0.00 0.00 3.16
777 778 7.354312 TCTCTTCTCCCCTAATTTTAAATGGG 58.646 38.462 6.21 6.21 37.68 4.00
795 796 1.632589 GGGGGTGAAGAATGCTTTGT 58.367 50.000 0.00 0.00 33.61 2.83
796 797 1.273327 GGGGGTGAAGAATGCTTTGTG 59.727 52.381 0.00 0.00 33.61 3.33
797 798 2.238521 GGGGTGAAGAATGCTTTGTGA 58.761 47.619 0.00 0.00 33.61 3.58
798 799 2.827921 GGGGTGAAGAATGCTTTGTGAT 59.172 45.455 0.00 0.00 33.61 3.06
799 800 3.259123 GGGGTGAAGAATGCTTTGTGATT 59.741 43.478 0.00 0.00 33.61 2.57
800 801 4.262592 GGGGTGAAGAATGCTTTGTGATTT 60.263 41.667 0.00 0.00 33.61 2.17
801 802 4.687483 GGGTGAAGAATGCTTTGTGATTTG 59.313 41.667 0.00 0.00 33.61 2.32
802 803 5.291971 GGTGAAGAATGCTTTGTGATTTGT 58.708 37.500 0.00 0.00 33.61 2.83
803 804 5.176223 GGTGAAGAATGCTTTGTGATTTGTG 59.824 40.000 0.00 0.00 33.61 3.33
804 805 5.978919 GTGAAGAATGCTTTGTGATTTGTGA 59.021 36.000 0.00 0.00 33.61 3.58
805 806 6.476380 GTGAAGAATGCTTTGTGATTTGTGAA 59.524 34.615 0.00 0.00 33.61 3.18
806 807 7.170320 GTGAAGAATGCTTTGTGATTTGTGAAT 59.830 33.333 0.00 0.00 33.61 2.57
807 808 7.170151 TGAAGAATGCTTTGTGATTTGTGAATG 59.830 33.333 0.00 0.00 33.61 2.67
808 809 6.751157 AGAATGCTTTGTGATTTGTGAATGA 58.249 32.000 0.00 0.00 0.00 2.57
809 810 6.643770 AGAATGCTTTGTGATTTGTGAATGAC 59.356 34.615 0.00 0.00 31.04 3.06
810 811 5.259832 TGCTTTGTGATTTGTGAATGACA 57.740 34.783 0.00 0.00 37.55 3.58
827 828 3.548745 GACACATGTCATCCATCAGGA 57.451 47.619 7.15 0.00 44.18 3.86
837 838 4.766970 CATCAGGATGGGTCTCGC 57.233 61.111 1.25 0.00 36.16 5.03
838 839 1.300465 CATCAGGATGGGTCTCGCG 60.300 63.158 0.00 0.00 36.16 5.87
839 840 1.758514 ATCAGGATGGGTCTCGCGT 60.759 57.895 5.77 0.00 36.16 6.01
840 841 2.021068 ATCAGGATGGGTCTCGCGTG 62.021 60.000 5.77 3.13 36.16 5.34
841 842 2.362503 AGGATGGGTCTCGCGTGA 60.363 61.111 5.77 6.33 0.00 4.35
842 843 1.982395 AGGATGGGTCTCGCGTGAA 60.982 57.895 13.07 0.00 0.00 3.18
843 844 1.079405 GGATGGGTCTCGCGTGAAA 60.079 57.895 13.07 2.27 0.00 2.69
844 845 1.359459 GGATGGGTCTCGCGTGAAAC 61.359 60.000 13.07 9.19 0.00 2.78
845 846 1.359459 GATGGGTCTCGCGTGAAACC 61.359 60.000 13.22 13.22 0.00 3.27
846 847 1.827399 ATGGGTCTCGCGTGAAACCT 61.827 55.000 20.30 0.00 32.22 3.50
847 848 2.027625 GGGTCTCGCGTGAAACCTG 61.028 63.158 20.30 0.00 32.22 4.00
848 849 2.027625 GGTCTCGCGTGAAACCTGG 61.028 63.158 14.29 0.00 0.00 4.45
849 850 1.300697 GTCTCGCGTGAAACCTGGT 60.301 57.895 13.07 0.00 0.00 4.00
850 851 1.006571 TCTCGCGTGAAACCTGGTC 60.007 57.895 8.66 0.00 0.00 4.02
851 852 1.006102 CTCGCGTGAAACCTGGTCT 60.006 57.895 5.77 0.00 0.00 3.85
852 853 1.006571 TCGCGTGAAACCTGGTCTC 60.007 57.895 5.77 0.00 0.00 3.36
853 854 1.300620 CGCGTGAAACCTGGTCTCA 60.301 57.895 0.00 0.00 0.00 3.27
854 855 0.670546 CGCGTGAAACCTGGTCTCAT 60.671 55.000 6.07 0.00 0.00 2.90
855 856 0.798776 GCGTGAAACCTGGTCTCATG 59.201 55.000 16.39 16.39 0.00 3.07
856 857 1.442769 CGTGAAACCTGGTCTCATGG 58.557 55.000 13.50 2.67 0.00 3.66
857 858 1.001974 CGTGAAACCTGGTCTCATGGA 59.998 52.381 13.50 0.00 0.00 3.41
858 859 2.549992 CGTGAAACCTGGTCTCATGGAA 60.550 50.000 13.50 0.00 0.00 3.53
859 860 3.690460 GTGAAACCTGGTCTCATGGAAT 58.310 45.455 6.07 0.00 0.00 3.01
860 861 4.082125 GTGAAACCTGGTCTCATGGAATT 58.918 43.478 6.07 0.00 0.00 2.17
861 862 4.524328 GTGAAACCTGGTCTCATGGAATTT 59.476 41.667 6.07 0.00 0.00 1.82
862 863 5.011023 GTGAAACCTGGTCTCATGGAATTTT 59.989 40.000 6.07 0.00 0.00 1.82
863 864 5.602145 TGAAACCTGGTCTCATGGAATTTTT 59.398 36.000 0.00 0.00 0.00 1.94
888 889 1.692042 ATCCCTGGACTGGCTGGAG 60.692 63.158 0.00 0.00 0.00 3.86
891 892 4.463879 CTGGACTGGCTGGAGGCG 62.464 72.222 0.00 0.00 44.42 5.52
933 934 1.278127 CCCGCAAGTTTCTTCCTCCTA 59.722 52.381 0.00 0.00 0.00 2.94
974 975 3.639094 CGTCCTTGATATCTCTTCCCAGT 59.361 47.826 3.98 0.00 0.00 4.00
1093 1097 4.555610 GCCATGAGAAGAGGCTGG 57.444 61.111 0.00 0.00 44.92 4.85
1178 1182 7.761704 GCCTTTAATCAATCCTCTTTTCTTTCC 59.238 37.037 0.00 0.00 0.00 3.13
1181 1185 5.542848 ATCAATCCTCTTTTCTTTCCCCT 57.457 39.130 0.00 0.00 0.00 4.79
1212 1216 2.749044 CGCACATTGCCCTGCTCT 60.749 61.111 0.00 0.00 41.12 4.09
1213 1217 2.882876 GCACATTGCCCTGCTCTG 59.117 61.111 0.00 0.00 37.42 3.35
1216 1220 2.044252 CATTGCCCTGCTCTGCCT 60.044 61.111 0.00 0.00 0.00 4.75
1218 1222 0.394762 CATTGCCCTGCTCTGCCTAA 60.395 55.000 0.00 0.00 0.00 2.69
1219 1223 0.332632 ATTGCCCTGCTCTGCCTAAA 59.667 50.000 0.00 0.00 0.00 1.85
1220 1224 0.112218 TTGCCCTGCTCTGCCTAAAA 59.888 50.000 0.00 0.00 0.00 1.52
1221 1225 0.322816 TGCCCTGCTCTGCCTAAAAG 60.323 55.000 0.00 0.00 0.00 2.27
1223 1227 0.322816 CCCTGCTCTGCCTAAAAGCA 60.323 55.000 0.00 0.00 43.40 3.91
1507 1536 0.739462 TACCGCAATCGTCTTGCTGG 60.739 55.000 21.46 21.46 42.87 4.85
1524 1602 2.739379 GCTGGTTCTCTTCAGTTACAGC 59.261 50.000 0.00 0.00 33.81 4.40
1528 1606 3.591023 GTTCTCTTCAGTTACAGCTCCC 58.409 50.000 0.00 0.00 0.00 4.30
1554 1632 0.041312 TTTCTTCAGCAGAAACGCGC 60.041 50.000 5.73 0.00 45.12 6.86
1555 1633 0.880278 TTCTTCAGCAGAAACGCGCT 60.880 50.000 5.73 0.00 38.68 5.92
1573 1651 5.567534 ACGCGCTGTTTCATAATACTTTTTG 59.432 36.000 5.73 0.00 0.00 2.44
1627 1706 1.818674 GACATTTTCCCCGTGCATTCT 59.181 47.619 0.00 0.00 0.00 2.40
1628 1707 2.231235 GACATTTTCCCCGTGCATTCTT 59.769 45.455 0.00 0.00 0.00 2.52
1638 1717 3.428045 CCCGTGCATTCTTTGATTTCCTC 60.428 47.826 0.00 0.00 0.00 3.71
1639 1718 3.419915 CGTGCATTCTTTGATTTCCTCG 58.580 45.455 0.00 0.00 0.00 4.63
1640 1719 3.120199 CGTGCATTCTTTGATTTCCTCGT 60.120 43.478 0.00 0.00 0.00 4.18
1641 1720 4.092821 CGTGCATTCTTTGATTTCCTCGTA 59.907 41.667 0.00 0.00 0.00 3.43
1692 1776 1.527311 CGATGATGATCAGCACAGCAG 59.473 52.381 17.26 2.34 37.10 4.24
1713 1797 0.097674 GCACATGCATGTCTCCGTTC 59.902 55.000 29.23 8.84 39.39 3.95
1714 1798 1.441738 CACATGCATGTCTCCGTTCA 58.558 50.000 29.23 0.00 39.39 3.18
1715 1799 2.011947 CACATGCATGTCTCCGTTCAT 58.988 47.619 29.23 0.96 39.39 2.57
1716 1800 2.011947 ACATGCATGTCTCCGTTCATG 58.988 47.619 26.61 0.00 42.71 3.07
1796 1880 1.891150 ACCATAATCCGGTAGGTAGCG 59.109 52.381 0.00 1.60 45.77 4.26
1804 1888 1.595357 GGTAGGTAGCGCCAACAGT 59.405 57.895 2.29 0.00 40.61 3.55
1821 1906 4.483476 ACAGTTTCGCTTTAACACATCC 57.517 40.909 0.00 0.00 0.00 3.51
1859 1944 1.207791 AGCTCATGGTCCTACAAGGG 58.792 55.000 0.00 0.00 35.59 3.95
1869 1954 3.199946 GGTCCTACAAGGGTGATGATGAA 59.800 47.826 0.00 0.00 35.59 2.57
1870 1955 4.192317 GTCCTACAAGGGTGATGATGAAC 58.808 47.826 0.00 0.00 35.59 3.18
1894 1981 1.453379 ATCTGCATCAGGCCACTGC 60.453 57.895 5.01 11.55 44.54 4.40
1949 2036 6.171213 TCAGATCAGTTCTCGTCACTACTAA 58.829 40.000 0.00 0.00 29.93 2.24
1958 2046 9.194271 AGTTCTCGTCACTACTAAAGATTTTTC 57.806 33.333 0.00 0.00 0.00 2.29
2050 2154 2.165301 CGGGCGATTCGGAGTTCAC 61.165 63.158 8.34 0.00 0.00 3.18
2078 2182 6.442952 TGGCGTACGTACTCTTAAAAAGTTA 58.557 36.000 22.55 0.00 0.00 2.24
2119 2223 4.783450 GCATATGTAAACGAGTTGCTGCTC 60.783 45.833 4.29 0.00 0.00 4.26
2162 2266 6.935741 TTGCTCACTATTTGTACTGTTTGT 57.064 33.333 0.00 0.00 0.00 2.83
2287 2391 2.613133 GGTTTCTGCAGATCTCATCAGC 59.387 50.000 19.04 2.21 41.56 4.26
2336 2445 8.079809 TGTTTTTCACTAATGCTAGGCTTTTAC 58.920 33.333 0.00 0.00 0.00 2.01
2424 2533 3.820467 AGTCGATCATGGTTTTGAGCAAA 59.180 39.130 0.00 0.00 31.54 3.68
2453 2563 1.123861 AACAGGTGCTGCTCTCAGGA 61.124 55.000 0.00 0.00 40.65 3.86
2584 2695 4.110482 GTGTAACGCTGGAACTAATCGAT 58.890 43.478 0.00 0.00 0.00 3.59
2760 2882 8.318412 TCTTACACACTGATTTGGCTTAAGATA 58.682 33.333 6.67 0.00 0.00 1.98
2860 2982 7.721286 AAGACTGTCTAAATTCAACACTCAG 57.279 36.000 11.30 0.00 0.00 3.35
2892 3014 4.770531 TGGTCAGATCTCTTTTCGTTCCTA 59.229 41.667 0.00 0.00 0.00 2.94
2895 3017 6.095160 GGTCAGATCTCTTTTCGTTCCTACTA 59.905 42.308 0.00 0.00 0.00 1.82
2960 3082 3.456277 ACTGATCATACTTTCCACCCCTC 59.544 47.826 0.00 0.00 0.00 4.30
3051 3173 6.373495 TCAGCGTACGATGTATATCAGGTAAT 59.627 38.462 30.18 0.00 32.67 1.89
3059 3181 8.188799 ACGATGTATATCAGGTAATGGAATACG 58.811 37.037 0.11 0.00 33.27 3.06
3070 3192 5.521372 GGTAATGGAATACGTTGTACCAGTC 59.479 44.000 0.00 0.00 34.08 3.51
3193 3315 2.203877 TGTAAGGCGGACCCCAGT 60.204 61.111 2.29 0.00 36.11 4.00
3234 3356 3.569194 TGCAACTCTCCAAGGTTACAA 57.431 42.857 0.00 0.00 0.00 2.41
3253 3458 9.503427 GGTTACAATCAGTGCTTTATACAAATC 57.497 33.333 0.00 0.00 0.00 2.17
3290 3498 0.677842 ACGAGCGGGTGTAAAGTTCT 59.322 50.000 0.00 0.00 0.00 3.01
3291 3499 1.069668 ACGAGCGGGTGTAAAGTTCTT 59.930 47.619 0.00 0.00 0.00 2.52
3292 3500 1.725164 CGAGCGGGTGTAAAGTTCTTC 59.275 52.381 0.00 0.00 0.00 2.87
3351 3559 4.916983 AAGAAGTGCAATGTTAACAGCA 57.083 36.364 16.17 16.17 34.10 4.41
3533 3741 5.540911 CCTTTTAGTGATGCATGGTGTTTT 58.459 37.500 2.46 0.00 0.00 2.43
3536 3744 5.981088 TTAGTGATGCATGGTGTTTTCAT 57.019 34.783 2.46 0.00 0.00 2.57
3603 3811 1.497286 TGGTACTTTGAAAGGGGTGCT 59.503 47.619 10.02 0.00 0.00 4.40
3624 3832 1.298157 CCCAAGAAATCGACTGCGCA 61.298 55.000 10.98 10.98 37.46 6.09
3672 3880 9.996554 CACAACATTATACCATCTAATCAGGTA 57.003 33.333 0.00 0.00 41.72 3.08
3691 3899 6.152661 TCAGGTAAGTTAATGGGAAATGCAAG 59.847 38.462 0.00 0.00 0.00 4.01
3782 3990 2.653726 TGATATTTTGCAGGTCGGCAT 58.346 42.857 0.00 0.00 44.48 4.40
3829 4037 5.690865 AGGTTGGTTCATAGTGTTCTTCAA 58.309 37.500 0.00 0.00 0.00 2.69
4003 4212 8.043710 TGCTTTCTTTGGTCCATTTTCTTTAAA 58.956 29.630 0.00 0.00 0.00 1.52
4120 4331 1.469079 GCATTTGTTCCCCGTGTATGC 60.469 52.381 0.00 0.00 0.00 3.14
4123 4334 0.322098 TTGTTCCCCGTGTATGCCAG 60.322 55.000 0.00 0.00 0.00 4.85
4126 4337 4.155733 CCCCGTGTATGCCAGCGA 62.156 66.667 0.00 0.00 0.00 4.93
4133 4344 2.009774 GTGTATGCCAGCGATTCAACT 58.990 47.619 0.00 0.00 0.00 3.16
4171 4382 9.793252 AGAGAAATGTAAATATTTCACATGCAC 57.207 29.630 16.90 12.86 45.23 4.57
4172 4383 9.793252 GAGAAATGTAAATATTTCACATGCACT 57.207 29.630 16.90 15.63 45.23 4.40
4173 4384 9.793252 AGAAATGTAAATATTTCACATGCACTC 57.207 29.630 16.90 13.06 45.23 3.51
4174 4385 8.931385 AAATGTAAATATTTCACATGCACTCC 57.069 30.769 16.90 0.00 33.31 3.85
4175 4386 6.449635 TGTAAATATTTCACATGCACTCCC 57.550 37.500 3.39 0.00 0.00 4.30
4176 4387 6.186957 TGTAAATATTTCACATGCACTCCCT 58.813 36.000 3.39 0.00 0.00 4.20
4177 4388 5.841957 AAATATTTCACATGCACTCCCTC 57.158 39.130 0.00 0.00 0.00 4.30
4178 4389 2.134789 ATTTCACATGCACTCCCTCC 57.865 50.000 0.00 0.00 0.00 4.30
4179 4390 0.321564 TTTCACATGCACTCCCTCCG 60.322 55.000 0.00 0.00 0.00 4.63
4180 4391 1.480212 TTCACATGCACTCCCTCCGT 61.480 55.000 0.00 0.00 0.00 4.69
4181 4392 1.448540 CACATGCACTCCCTCCGTC 60.449 63.158 0.00 0.00 0.00 4.79
4182 4393 2.187946 CATGCACTCCCTCCGTCC 59.812 66.667 0.00 0.00 0.00 4.79
4183 4394 3.461773 ATGCACTCCCTCCGTCCG 61.462 66.667 0.00 0.00 0.00 4.79
4184 4395 3.957435 ATGCACTCCCTCCGTCCGA 62.957 63.158 0.00 0.00 0.00 4.55
4185 4396 3.379445 GCACTCCCTCCGTCCGAA 61.379 66.667 0.00 0.00 0.00 4.30
4186 4397 2.939261 GCACTCCCTCCGTCCGAAA 61.939 63.158 0.00 0.00 0.00 3.46
4187 4398 1.669440 CACTCCCTCCGTCCGAAAA 59.331 57.895 0.00 0.00 0.00 2.29
4188 4399 0.249398 CACTCCCTCCGTCCGAAAAT 59.751 55.000 0.00 0.00 0.00 1.82
4189 4400 1.479323 CACTCCCTCCGTCCGAAAATA 59.521 52.381 0.00 0.00 0.00 1.40
4190 4401 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
4191 4402 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
4192 4403 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
4193 4404 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
4194 4405 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
4195 4406 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
4196 4407 2.928116 CTCCGTCCGAAAATACTTGTCC 59.072 50.000 0.00 0.00 0.00 4.02
4197 4408 2.564062 TCCGTCCGAAAATACTTGTCCT 59.436 45.455 0.00 0.00 0.00 3.85
4198 4409 3.763360 TCCGTCCGAAAATACTTGTCCTA 59.237 43.478 0.00 0.00 0.00 2.94
4199 4410 4.110482 CCGTCCGAAAATACTTGTCCTAG 58.890 47.826 0.00 0.00 0.00 3.02
4200 4411 4.142315 CCGTCCGAAAATACTTGTCCTAGA 60.142 45.833 0.00 0.00 0.00 2.43
4201 4412 5.404946 CGTCCGAAAATACTTGTCCTAGAA 58.595 41.667 0.00 0.00 0.00 2.10
4202 4413 5.865552 CGTCCGAAAATACTTGTCCTAGAAA 59.134 40.000 0.00 0.00 0.00 2.52
4203 4414 6.534079 CGTCCGAAAATACTTGTCCTAGAAAT 59.466 38.462 0.00 0.00 0.00 2.17
4204 4415 7.464178 CGTCCGAAAATACTTGTCCTAGAAATG 60.464 40.741 0.00 0.00 0.00 2.32
4205 4416 6.821665 TCCGAAAATACTTGTCCTAGAAATGG 59.178 38.462 0.00 0.00 0.00 3.16
4206 4417 6.821665 CCGAAAATACTTGTCCTAGAAATGGA 59.178 38.462 0.00 0.00 0.00 3.41
4207 4418 7.499232 CCGAAAATACTTGTCCTAGAAATGGAT 59.501 37.037 0.00 0.00 35.87 3.41
4208 4419 9.542462 CGAAAATACTTGTCCTAGAAATGGATA 57.458 33.333 0.00 0.00 35.87 2.59
4214 4425 8.525290 ACTTGTCCTAGAAATGGATAAAATGG 57.475 34.615 0.00 0.00 34.98 3.16
4215 4426 8.336235 ACTTGTCCTAGAAATGGATAAAATGGA 58.664 33.333 0.00 0.00 34.98 3.41
4216 4427 9.359653 CTTGTCCTAGAAATGGATAAAATGGAT 57.640 33.333 0.00 0.00 34.98 3.41
4217 4428 8.696043 TGTCCTAGAAATGGATAAAATGGATG 57.304 34.615 0.00 0.00 35.87 3.51
4218 4429 8.501904 TGTCCTAGAAATGGATAAAATGGATGA 58.498 33.333 0.00 0.00 35.87 2.92
4219 4430 9.354673 GTCCTAGAAATGGATAAAATGGATGAA 57.645 33.333 0.00 0.00 35.87 2.57
4259 4470 8.840200 AAGTCTAGATACAACCATTTCTAGGA 57.160 34.615 0.00 0.00 38.67 2.94
4260 4471 8.240267 AGTCTAGATACAACCATTTCTAGGAC 57.760 38.462 0.00 0.00 38.67 3.85
4261 4472 7.839705 AGTCTAGATACAACCATTTCTAGGACA 59.160 37.037 0.00 0.00 38.67 4.02
4262 4473 8.475639 GTCTAGATACAACCATTTCTAGGACAA 58.524 37.037 0.00 0.00 38.67 3.18
4263 4474 8.696374 TCTAGATACAACCATTTCTAGGACAAG 58.304 37.037 6.10 0.00 38.67 3.16
4264 4475 7.259088 AGATACAACCATTTCTAGGACAAGT 57.741 36.000 0.00 0.00 0.00 3.16
4265 4476 8.375493 AGATACAACCATTTCTAGGACAAGTA 57.625 34.615 0.00 0.00 0.00 2.24
4266 4477 8.993424 AGATACAACCATTTCTAGGACAAGTAT 58.007 33.333 0.00 0.00 0.00 2.12
4267 4478 9.614792 GATACAACCATTTCTAGGACAAGTATT 57.385 33.333 0.00 0.00 0.00 1.89
4268 4479 9.975218 ATACAACCATTTCTAGGACAAGTATTT 57.025 29.630 0.00 0.00 0.00 1.40
4269 4480 8.336801 ACAACCATTTCTAGGACAAGTATTTC 57.663 34.615 0.00 0.00 0.00 2.17
4270 4481 7.393515 ACAACCATTTCTAGGACAAGTATTTCC 59.606 37.037 0.00 0.00 0.00 3.13
4271 4482 6.113411 ACCATTTCTAGGACAAGTATTTCCG 58.887 40.000 0.00 0.00 36.95 4.30
4272 4483 6.070424 ACCATTTCTAGGACAAGTATTTCCGA 60.070 38.462 0.00 0.00 36.95 4.55
4273 4484 6.821665 CCATTTCTAGGACAAGTATTTCCGAA 59.178 38.462 0.00 0.00 36.95 4.30
4274 4485 7.201617 CCATTTCTAGGACAAGTATTTCCGAAC 60.202 40.741 0.00 0.00 36.95 3.95
4275 4486 4.990257 TCTAGGACAAGTATTTCCGAACG 58.010 43.478 0.00 0.00 36.95 3.95
4276 4487 2.968675 AGGACAAGTATTTCCGAACGG 58.031 47.619 6.94 6.94 36.95 4.44
4277 4488 2.564062 AGGACAAGTATTTCCGAACGGA 59.436 45.455 12.04 12.04 43.52 4.69
4285 4496 3.708210 TCCGAACGGAAGGAGCAT 58.292 55.556 13.65 0.00 42.05 3.79
4286 4497 1.218047 TCCGAACGGAAGGAGCATG 59.782 57.895 13.65 0.00 42.05 4.06
4287 4498 1.079127 CCGAACGGAAGGAGCATGT 60.079 57.895 7.53 0.00 37.50 3.21
4288 4499 0.174845 CCGAACGGAAGGAGCATGTA 59.825 55.000 7.53 0.00 37.50 2.29
4289 4500 1.202533 CCGAACGGAAGGAGCATGTAT 60.203 52.381 7.53 0.00 37.50 2.29
4290 4501 1.860950 CGAACGGAAGGAGCATGTATG 59.139 52.381 0.00 0.00 0.00 2.39
4334 4545 3.005050 GCCAAAAACTACTTAGCGGGTTT 59.995 43.478 0.00 0.00 34.01 3.27
4350 4561 5.245075 AGCGGGTTTTAAAATTCTTGATGGA 59.755 36.000 3.52 0.00 0.00 3.41
4415 4626 0.106521 GGGCTGCCAAGAAAAGCAAA 59.893 50.000 22.05 0.00 38.82 3.68
4495 4706 2.725221 AGCCCAAGAAGAATAGCTGG 57.275 50.000 0.00 0.00 0.00 4.85
4596 4810 3.013073 CCCCACCCCCTTTTCCTTATTTA 59.987 47.826 0.00 0.00 0.00 1.40
4597 4811 4.286707 CCCACCCCCTTTTCCTTATTTAG 58.713 47.826 0.00 0.00 0.00 1.85
4634 4849 8.768957 AGTATTCAGACACATATATCACATGC 57.231 34.615 0.00 0.00 0.00 4.06
4689 4904 4.024048 CCGTTCTAGATGTGTTGTTTGCTT 60.024 41.667 0.00 0.00 0.00 3.91
4745 4960 1.296715 GATCAGCGGACAGTGGGTT 59.703 57.895 0.00 0.00 0.00 4.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 9.120538 GCCAAAATTCTCTCCATGTTATACTTA 57.879 33.333 0.00 0.00 0.00 2.24
16 17 7.615365 TGCCAAAATTCTCTCCATGTTATACTT 59.385 33.333 0.00 0.00 0.00 2.24
17 18 7.118723 TGCCAAAATTCTCTCCATGTTATACT 58.881 34.615 0.00 0.00 0.00 2.12
18 19 7.333528 TGCCAAAATTCTCTCCATGTTATAC 57.666 36.000 0.00 0.00 0.00 1.47
19 20 7.953005 TTGCCAAAATTCTCTCCATGTTATA 57.047 32.000 0.00 0.00 0.00 0.98
20 21 6.855763 TTGCCAAAATTCTCTCCATGTTAT 57.144 33.333 0.00 0.00 0.00 1.89
21 22 6.041409 TGTTTGCCAAAATTCTCTCCATGTTA 59.959 34.615 0.00 0.00 0.00 2.41
22 23 5.163322 TGTTTGCCAAAATTCTCTCCATGTT 60.163 36.000 0.00 0.00 0.00 2.71
23 24 4.344679 TGTTTGCCAAAATTCTCTCCATGT 59.655 37.500 0.00 0.00 0.00 3.21
24 25 4.885413 TGTTTGCCAAAATTCTCTCCATG 58.115 39.130 0.00 0.00 0.00 3.66
25 26 5.750352 ATGTTTGCCAAAATTCTCTCCAT 57.250 34.783 0.00 0.00 0.00 3.41
26 27 5.549742 AATGTTTGCCAAAATTCTCTCCA 57.450 34.783 0.00 0.00 0.00 3.86
27 28 8.552083 AATAAATGTTTGCCAAAATTCTCTCC 57.448 30.769 0.00 0.00 0.00 3.71
36 37 9.330063 TGATTGTGTAAATAAATGTTTGCCAAA 57.670 25.926 0.00 0.00 0.00 3.28
37 38 8.768955 GTGATTGTGTAAATAAATGTTTGCCAA 58.231 29.630 0.00 0.00 0.00 4.52
38 39 7.928167 TGTGATTGTGTAAATAAATGTTTGCCA 59.072 29.630 0.00 0.00 0.00 4.92
39 40 8.220434 GTGTGATTGTGTAAATAAATGTTTGCC 58.780 33.333 0.00 0.00 0.00 4.52
40 41 8.977505 AGTGTGATTGTGTAAATAAATGTTTGC 58.022 29.630 0.00 0.00 0.00 3.68
62 63 7.355017 CGCAATTTATCTGCACATATTAGTGT 58.645 34.615 0.00 0.00 41.52 3.55
63 64 6.798476 CCGCAATTTATCTGCACATATTAGTG 59.202 38.462 0.00 0.00 39.91 2.74
64 65 6.072508 CCCGCAATTTATCTGCACATATTAGT 60.073 38.462 0.00 0.00 39.91 2.24
65 66 6.149308 TCCCGCAATTTATCTGCACATATTAG 59.851 38.462 0.00 0.00 39.91 1.73
66 67 6.000840 TCCCGCAATTTATCTGCACATATTA 58.999 36.000 0.00 0.00 39.91 0.98
67 68 4.826733 TCCCGCAATTTATCTGCACATATT 59.173 37.500 0.00 0.00 39.91 1.28
68 69 4.397420 TCCCGCAATTTATCTGCACATAT 58.603 39.130 0.00 0.00 39.91 1.78
69 70 3.814625 TCCCGCAATTTATCTGCACATA 58.185 40.909 0.00 0.00 39.91 2.29
70 71 2.653726 TCCCGCAATTTATCTGCACAT 58.346 42.857 0.00 0.00 39.91 3.21
71 72 2.121291 TCCCGCAATTTATCTGCACA 57.879 45.000 0.00 0.00 39.91 4.57
72 73 4.537015 GTTATCCCGCAATTTATCTGCAC 58.463 43.478 0.00 0.00 39.91 4.57
73 74 3.249799 CGTTATCCCGCAATTTATCTGCA 59.750 43.478 0.00 0.00 39.91 4.41
74 75 3.250040 ACGTTATCCCGCAATTTATCTGC 59.750 43.478 0.00 0.00 36.41 4.26
75 76 5.694910 AGTACGTTATCCCGCAATTTATCTG 59.305 40.000 0.00 0.00 0.00 2.90
76 77 5.850614 AGTACGTTATCCCGCAATTTATCT 58.149 37.500 0.00 0.00 0.00 1.98
77 78 7.642071 TTAGTACGTTATCCCGCAATTTATC 57.358 36.000 0.00 0.00 0.00 1.75
78 79 8.436046 TTTTAGTACGTTATCCCGCAATTTAT 57.564 30.769 0.00 0.00 0.00 1.40
79 80 7.840342 TTTTAGTACGTTATCCCGCAATTTA 57.160 32.000 0.00 0.00 0.00 1.40
80 81 6.740411 TTTTAGTACGTTATCCCGCAATTT 57.260 33.333 0.00 0.00 0.00 1.82
81 82 6.930667 ATTTTAGTACGTTATCCCGCAATT 57.069 33.333 0.00 0.00 0.00 2.32
82 83 8.611654 AATATTTTAGTACGTTATCCCGCAAT 57.388 30.769 0.00 0.00 0.00 3.56
83 84 8.436046 AAATATTTTAGTACGTTATCCCGCAA 57.564 30.769 0.00 0.00 0.00 4.85
84 85 9.709495 ATAAATATTTTAGTACGTTATCCCGCA 57.291 29.630 5.91 0.00 0.00 5.69
99 100 9.467990 GCGTTTCATCGCGATATAAATATTTTA 57.532 29.630 23.22 0.00 46.31 1.52
100 101 8.364480 GCGTTTCATCGCGATATAAATATTTT 57.636 30.769 23.22 0.00 46.31 1.82
101 102 7.932643 GCGTTTCATCGCGATATAAATATTT 57.067 32.000 23.22 5.89 46.31 1.40
115 116 4.281264 TGATAATTGCATGCGTTTCATCG 58.719 39.130 14.09 0.00 31.79 3.84
116 117 5.916320 TGATGATAATTGCATGCGTTTCATC 59.084 36.000 27.05 27.05 38.96 2.92
117 118 5.834169 TGATGATAATTGCATGCGTTTCAT 58.166 33.333 14.09 18.24 35.31 2.57
118 119 5.246145 TGATGATAATTGCATGCGTTTCA 57.754 34.783 14.09 15.08 0.00 2.69
119 120 7.966753 AGATATGATGATAATTGCATGCGTTTC 59.033 33.333 14.09 10.75 0.00 2.78
120 121 7.823665 AGATATGATGATAATTGCATGCGTTT 58.176 30.769 14.09 11.44 0.00 3.60
121 122 7.387119 AGATATGATGATAATTGCATGCGTT 57.613 32.000 14.09 12.91 0.00 4.84
122 123 6.997239 AGATATGATGATAATTGCATGCGT 57.003 33.333 14.09 0.67 0.00 5.24
141 142 9.502091 GGCTAATGTTGATGTTGGTATTAGATA 57.498 33.333 0.00 0.00 32.57 1.98
142 143 7.998383 TGGCTAATGTTGATGTTGGTATTAGAT 59.002 33.333 0.00 0.00 32.57 1.98
143 144 7.342581 TGGCTAATGTTGATGTTGGTATTAGA 58.657 34.615 0.00 0.00 32.57 2.10
144 145 7.566760 TGGCTAATGTTGATGTTGGTATTAG 57.433 36.000 0.00 0.00 33.48 1.73
145 146 7.946381 TTGGCTAATGTTGATGTTGGTATTA 57.054 32.000 0.00 0.00 0.00 0.98
146 147 6.849085 TTGGCTAATGTTGATGTTGGTATT 57.151 33.333 0.00 0.00 0.00 1.89
147 148 6.663093 TCTTTGGCTAATGTTGATGTTGGTAT 59.337 34.615 0.00 0.00 0.00 2.73
148 149 6.007076 TCTTTGGCTAATGTTGATGTTGGTA 58.993 36.000 0.00 0.00 0.00 3.25
149 150 4.832266 TCTTTGGCTAATGTTGATGTTGGT 59.168 37.500 0.00 0.00 0.00 3.67
150 151 5.389859 TCTTTGGCTAATGTTGATGTTGG 57.610 39.130 0.00 0.00 0.00 3.77
151 152 7.894376 AATTCTTTGGCTAATGTTGATGTTG 57.106 32.000 0.00 0.00 0.00 3.33
154 155 9.683069 GGTATAATTCTTTGGCTAATGTTGATG 57.317 33.333 0.00 0.00 0.00 3.07
155 156 8.860088 GGGTATAATTCTTTGGCTAATGTTGAT 58.140 33.333 0.00 0.00 0.00 2.57
156 157 8.058847 AGGGTATAATTCTTTGGCTAATGTTGA 58.941 33.333 0.00 0.00 0.00 3.18
157 158 8.237811 AGGGTATAATTCTTTGGCTAATGTTG 57.762 34.615 0.00 0.00 0.00 3.33
158 159 9.930158 TTAGGGTATAATTCTTTGGCTAATGTT 57.070 29.630 0.00 0.00 0.00 2.71
159 160 9.350951 GTTAGGGTATAATTCTTTGGCTAATGT 57.649 33.333 0.00 0.00 0.00 2.71
160 161 9.574516 AGTTAGGGTATAATTCTTTGGCTAATG 57.425 33.333 0.00 0.00 0.00 1.90
163 164 9.443365 AGTAGTTAGGGTATAATTCTTTGGCTA 57.557 33.333 0.00 0.00 0.00 3.93
164 165 8.333226 AGTAGTTAGGGTATAATTCTTTGGCT 57.667 34.615 0.00 0.00 0.00 4.75
176 177 9.670442 TCAGGAAATCAATAGTAGTTAGGGTAT 57.330 33.333 0.00 0.00 0.00 2.73
177 178 9.670442 ATCAGGAAATCAATAGTAGTTAGGGTA 57.330 33.333 0.00 0.00 0.00 3.69
178 179 7.989947 TCAGGAAATCAATAGTAGTTAGGGT 57.010 36.000 0.00 0.00 0.00 4.34
179 180 9.930693 GTATCAGGAAATCAATAGTAGTTAGGG 57.069 37.037 0.00 0.00 0.00 3.53
180 181 9.930693 GGTATCAGGAAATCAATAGTAGTTAGG 57.069 37.037 0.00 0.00 0.00 2.69
181 182 9.627395 CGGTATCAGGAAATCAATAGTAGTTAG 57.373 37.037 0.00 0.00 0.00 2.34
182 183 8.086522 GCGGTATCAGGAAATCAATAGTAGTTA 58.913 37.037 0.00 0.00 0.00 2.24
183 184 6.929606 GCGGTATCAGGAAATCAATAGTAGTT 59.070 38.462 0.00 0.00 0.00 2.24
184 185 6.267928 AGCGGTATCAGGAAATCAATAGTAGT 59.732 38.462 0.00 0.00 0.00 2.73
185 186 6.692486 AGCGGTATCAGGAAATCAATAGTAG 58.308 40.000 0.00 0.00 0.00 2.57
186 187 6.665992 AGCGGTATCAGGAAATCAATAGTA 57.334 37.500 0.00 0.00 0.00 1.82
187 188 5.552870 AGCGGTATCAGGAAATCAATAGT 57.447 39.130 0.00 0.00 0.00 2.12
188 189 8.446273 CAATAAGCGGTATCAGGAAATCAATAG 58.554 37.037 0.00 0.00 0.00 1.73
189 190 7.936847 ACAATAAGCGGTATCAGGAAATCAATA 59.063 33.333 0.00 0.00 0.00 1.90
190 191 6.772716 ACAATAAGCGGTATCAGGAAATCAAT 59.227 34.615 0.00 0.00 0.00 2.57
191 192 6.038161 CACAATAAGCGGTATCAGGAAATCAA 59.962 38.462 0.00 0.00 0.00 2.57
192 193 5.527214 CACAATAAGCGGTATCAGGAAATCA 59.473 40.000 0.00 0.00 0.00 2.57
193 194 5.758296 TCACAATAAGCGGTATCAGGAAATC 59.242 40.000 0.00 0.00 0.00 2.17
194 195 5.680619 TCACAATAAGCGGTATCAGGAAAT 58.319 37.500 0.00 0.00 0.00 2.17
195 196 5.092554 TCACAATAAGCGGTATCAGGAAA 57.907 39.130 0.00 0.00 0.00 3.13
196 197 4.746535 TCACAATAAGCGGTATCAGGAA 57.253 40.909 0.00 0.00 0.00 3.36
197 198 4.442893 CCTTCACAATAAGCGGTATCAGGA 60.443 45.833 0.00 0.00 0.00 3.86
198 199 3.809832 CCTTCACAATAAGCGGTATCAGG 59.190 47.826 0.00 0.00 0.00 3.86
199 200 4.693283 TCCTTCACAATAAGCGGTATCAG 58.307 43.478 0.00 0.00 0.00 2.90
200 201 4.746535 TCCTTCACAATAAGCGGTATCA 57.253 40.909 0.00 0.00 0.00 2.15
201 202 7.063544 GTCATATCCTTCACAATAAGCGGTATC 59.936 40.741 0.00 0.00 0.00 2.24
202 203 6.874134 GTCATATCCTTCACAATAAGCGGTAT 59.126 38.462 0.00 0.00 0.00 2.73
203 204 6.041637 AGTCATATCCTTCACAATAAGCGGTA 59.958 38.462 0.00 0.00 0.00 4.02
204 205 5.057149 GTCATATCCTTCACAATAAGCGGT 58.943 41.667 0.00 0.00 0.00 5.68
205 206 5.300752 AGTCATATCCTTCACAATAAGCGG 58.699 41.667 0.00 0.00 0.00 5.52
206 207 8.539770 AATAGTCATATCCTTCACAATAAGCG 57.460 34.615 0.00 0.00 0.00 4.68
230 231 9.545105 TGAACTTCGGTGACTTTATTTAACTAA 57.455 29.630 0.00 0.00 0.00 2.24
231 232 9.545105 TTGAACTTCGGTGACTTTATTTAACTA 57.455 29.630 0.00 0.00 0.00 2.24
232 233 8.441312 TTGAACTTCGGTGACTTTATTTAACT 57.559 30.769 0.00 0.00 0.00 2.24
233 234 9.505995 TTTTGAACTTCGGTGACTTTATTTAAC 57.494 29.630 0.00 0.00 0.00 2.01
240 241 9.673454 GTAATATTTTTGAACTTCGGTGACTTT 57.327 29.630 0.00 0.00 0.00 2.66
241 242 9.063615 AGTAATATTTTTGAACTTCGGTGACTT 57.936 29.630 0.00 0.00 0.00 3.01
242 243 8.617290 AGTAATATTTTTGAACTTCGGTGACT 57.383 30.769 0.00 0.00 0.00 3.41
243 244 9.326339 GAAGTAATATTTTTGAACTTCGGTGAC 57.674 33.333 10.71 0.00 37.42 3.67
244 245 8.508875 GGAAGTAATATTTTTGAACTTCGGTGA 58.491 33.333 16.40 0.00 44.41 4.02
245 246 8.512138 AGGAAGTAATATTTTTGAACTTCGGTG 58.488 33.333 16.40 0.00 44.41 4.94
246 247 8.631480 AGGAAGTAATATTTTTGAACTTCGGT 57.369 30.769 16.40 8.05 44.41 4.69
247 248 9.556030 GAAGGAAGTAATATTTTTGAACTTCGG 57.444 33.333 16.40 0.00 44.41 4.30
310 311 9.807921 TCCCAAAATAAACTCTTGTCTTAGATT 57.192 29.630 0.00 0.00 0.00 2.40
311 312 9.981460 ATCCCAAAATAAACTCTTGTCTTAGAT 57.019 29.630 0.00 0.00 0.00 1.98
312 313 9.231297 CATCCCAAAATAAACTCTTGTCTTAGA 57.769 33.333 0.00 0.00 0.00 2.10
313 314 8.462016 CCATCCCAAAATAAACTCTTGTCTTAG 58.538 37.037 0.00 0.00 0.00 2.18
314 315 8.167392 TCCATCCCAAAATAAACTCTTGTCTTA 58.833 33.333 0.00 0.00 0.00 2.10
315 316 7.010160 TCCATCCCAAAATAAACTCTTGTCTT 58.990 34.615 0.00 0.00 0.00 3.01
316 317 6.552008 TCCATCCCAAAATAAACTCTTGTCT 58.448 36.000 0.00 0.00 0.00 3.41
317 318 6.659242 TCTCCATCCCAAAATAAACTCTTGTC 59.341 38.462 0.00 0.00 0.00 3.18
318 319 6.552008 TCTCCATCCCAAAATAAACTCTTGT 58.448 36.000 0.00 0.00 0.00 3.16
319 320 6.886459 TCTCTCCATCCCAAAATAAACTCTTG 59.114 38.462 0.00 0.00 0.00 3.02
320 321 7.032598 TCTCTCCATCCCAAAATAAACTCTT 57.967 36.000 0.00 0.00 0.00 2.85
321 322 6.216456 ACTCTCTCCATCCCAAAATAAACTCT 59.784 38.462 0.00 0.00 0.00 3.24
322 323 6.418946 ACTCTCTCCATCCCAAAATAAACTC 58.581 40.000 0.00 0.00 0.00 3.01
323 324 6.394345 ACTCTCTCCATCCCAAAATAAACT 57.606 37.500 0.00 0.00 0.00 2.66
324 325 7.339482 ACTACTCTCTCCATCCCAAAATAAAC 58.661 38.462 0.00 0.00 0.00 2.01
325 326 7.510675 ACTACTCTCTCCATCCCAAAATAAA 57.489 36.000 0.00 0.00 0.00 1.40
326 327 7.510675 AACTACTCTCTCCATCCCAAAATAA 57.489 36.000 0.00 0.00 0.00 1.40
327 328 7.510675 AAACTACTCTCTCCATCCCAAAATA 57.489 36.000 0.00 0.00 0.00 1.40
328 329 6.394345 AAACTACTCTCTCCATCCCAAAAT 57.606 37.500 0.00 0.00 0.00 1.82
329 330 5.843019 AAACTACTCTCTCCATCCCAAAA 57.157 39.130 0.00 0.00 0.00 2.44
330 331 8.798975 ATATAAACTACTCTCTCCATCCCAAA 57.201 34.615 0.00 0.00 0.00 3.28
331 332 8.235230 AGATATAAACTACTCTCTCCATCCCAA 58.765 37.037 0.00 0.00 0.00 4.12
332 333 7.770662 AGATATAAACTACTCTCTCCATCCCA 58.229 38.462 0.00 0.00 0.00 4.37
333 334 8.527810 CAAGATATAAACTACTCTCTCCATCCC 58.472 40.741 0.00 0.00 0.00 3.85
334 335 8.032451 GCAAGATATAAACTACTCTCTCCATCC 58.968 40.741 0.00 0.00 0.00 3.51
335 336 8.032451 GGCAAGATATAAACTACTCTCTCCATC 58.968 40.741 0.00 0.00 0.00 3.51
336 337 7.732593 AGGCAAGATATAAACTACTCTCTCCAT 59.267 37.037 0.00 0.00 0.00 3.41
337 338 7.069986 AGGCAAGATATAAACTACTCTCTCCA 58.930 38.462 0.00 0.00 0.00 3.86
338 339 7.533289 AGGCAAGATATAAACTACTCTCTCC 57.467 40.000 0.00 0.00 0.00 3.71
354 355 8.478877 CGAAGGGAGTATAATATTAGGCAAGAT 58.521 37.037 1.02 0.00 0.00 2.40
355 356 7.453752 ACGAAGGGAGTATAATATTAGGCAAGA 59.546 37.037 1.02 0.00 0.00 3.02
356 357 7.612677 ACGAAGGGAGTATAATATTAGGCAAG 58.387 38.462 1.02 0.00 0.00 4.01
357 358 7.549147 ACGAAGGGAGTATAATATTAGGCAA 57.451 36.000 1.02 0.00 0.00 4.52
358 359 7.310237 GGAACGAAGGGAGTATAATATTAGGCA 60.310 40.741 1.02 0.00 0.00 4.75
359 360 7.040494 GGAACGAAGGGAGTATAATATTAGGC 58.960 42.308 1.02 0.00 0.00 3.93
360 361 8.363761 AGGAACGAAGGGAGTATAATATTAGG 57.636 38.462 1.02 0.00 0.00 2.69
369 370 9.377238 AGTTATATTTAGGAACGAAGGGAGTAT 57.623 33.333 0.00 0.00 0.00 2.12
370 371 8.773033 AGTTATATTTAGGAACGAAGGGAGTA 57.227 34.615 0.00 0.00 0.00 2.59
371 372 7.564292 AGAGTTATATTTAGGAACGAAGGGAGT 59.436 37.037 0.00 0.00 0.00 3.85
372 373 7.953752 AGAGTTATATTTAGGAACGAAGGGAG 58.046 38.462 0.00 0.00 0.00 4.30
373 374 7.909485 AGAGTTATATTTAGGAACGAAGGGA 57.091 36.000 0.00 0.00 0.00 4.20
374 375 8.959705 AAAGAGTTATATTTAGGAACGAAGGG 57.040 34.615 0.00 0.00 0.00 3.95
402 403 9.314321 CCGTATGTAGTTTGTAATGAAATCTCT 57.686 33.333 0.00 0.00 0.00 3.10
403 404 9.309516 TCCGTATGTAGTTTGTAATGAAATCTC 57.690 33.333 0.00 0.00 0.00 2.75
404 405 9.832445 ATCCGTATGTAGTTTGTAATGAAATCT 57.168 29.630 0.00 0.00 0.00 2.40
405 406 9.864034 CATCCGTATGTAGTTTGTAATGAAATC 57.136 33.333 0.00 0.00 0.00 2.17
406 407 9.391006 ACATCCGTATGTAGTTTGTAATGAAAT 57.609 29.630 0.00 0.00 44.66 2.17
407 408 8.780846 ACATCCGTATGTAGTTTGTAATGAAA 57.219 30.769 0.00 0.00 44.66 2.69
436 437 9.731819 GTGAATCTACACTCGAAAATATGTCTA 57.268 33.333 0.00 0.00 37.73 2.59
437 438 8.470805 AGTGAATCTACACTCGAAAATATGTCT 58.529 33.333 0.00 0.00 46.36 3.41
438 439 8.635877 AGTGAATCTACACTCGAAAATATGTC 57.364 34.615 0.00 0.00 46.36 3.06
451 452 7.141363 ACAAAGCAAAATGAGTGAATCTACAC 58.859 34.615 0.00 0.00 40.60 2.90
452 453 7.275888 ACAAAGCAAAATGAGTGAATCTACA 57.724 32.000 0.00 0.00 0.00 2.74
453 454 9.282247 CATACAAAGCAAAATGAGTGAATCTAC 57.718 33.333 0.00 0.00 0.00 2.59
454 455 9.013229 ACATACAAAGCAAAATGAGTGAATCTA 57.987 29.630 0.00 0.00 0.00 1.98
455 456 7.889469 ACATACAAAGCAAAATGAGTGAATCT 58.111 30.769 0.00 0.00 0.00 2.40
456 457 9.282247 CTACATACAAAGCAAAATGAGTGAATC 57.718 33.333 0.00 0.00 0.00 2.52
457 458 8.796475 ACTACATACAAAGCAAAATGAGTGAAT 58.204 29.630 0.00 0.00 0.00 2.57
458 459 8.165239 ACTACATACAAAGCAAAATGAGTGAA 57.835 30.769 0.00 0.00 0.00 3.18
459 460 7.443879 TGACTACATACAAAGCAAAATGAGTGA 59.556 33.333 0.00 0.00 0.00 3.41
460 461 7.584108 TGACTACATACAAAGCAAAATGAGTG 58.416 34.615 0.00 0.00 0.00 3.51
461 462 7.744087 TGACTACATACAAAGCAAAATGAGT 57.256 32.000 0.00 0.00 0.00 3.41
549 550 7.464844 CGTGCAATGTCCGTTAATATTAGACAA 60.465 37.037 15.85 2.46 40.56 3.18
552 553 5.050634 GCGTGCAATGTCCGTTAATATTAGA 60.051 40.000 0.00 0.00 0.00 2.10
564 565 0.039256 ATTGTGTGCGTGCAATGTCC 60.039 50.000 0.00 0.00 34.44 4.02
574 575 5.639757 TGATTTTCCTATCAATTGTGTGCG 58.360 37.500 5.13 0.00 31.82 5.34
576 577 7.377398 TGGTTGATTTTCCTATCAATTGTGTG 58.623 34.615 5.13 0.00 44.01 3.82
586 587 4.962362 GGGTGGAATGGTTGATTTTCCTAT 59.038 41.667 0.00 0.00 39.72 2.57
587 588 4.349365 GGGTGGAATGGTTGATTTTCCTA 58.651 43.478 0.00 0.00 39.72 2.94
590 591 2.094234 CGGGGTGGAATGGTTGATTTTC 60.094 50.000 0.00 0.00 0.00 2.29
593 594 0.701731 TCGGGGTGGAATGGTTGATT 59.298 50.000 0.00 0.00 0.00 2.57
595 596 1.377229 GTCGGGGTGGAATGGTTGA 59.623 57.895 0.00 0.00 0.00 3.18
611 612 0.248498 TGATCTCATCGGCGTTCGTC 60.248 55.000 6.85 0.00 40.32 4.20
630 631 1.069765 GATGACGATGGGTGCGGAT 59.930 57.895 0.00 0.00 0.00 4.18
644 645 0.394762 GGCCAGAATGCACCAGATGA 60.395 55.000 0.00 0.00 31.76 2.92
723 724 1.006086 TTATGATGGCTTCGTGTGCG 58.994 50.000 5.43 0.00 39.92 5.34
729 730 5.929697 TTAGATGCTTTATGATGGCTTCG 57.070 39.130 0.00 0.00 35.98 3.79
732 733 7.018487 AGAGATTAGATGCTTTATGATGGCT 57.982 36.000 0.00 0.00 0.00 4.75
733 734 7.607223 AGAAGAGATTAGATGCTTTATGATGGC 59.393 37.037 0.00 0.00 0.00 4.40
735 736 9.153721 GGAGAAGAGATTAGATGCTTTATGATG 57.846 37.037 0.00 0.00 0.00 3.07
736 737 8.320617 GGGAGAAGAGATTAGATGCTTTATGAT 58.679 37.037 0.00 0.00 0.00 2.45
737 738 7.256475 GGGGAGAAGAGATTAGATGCTTTATGA 60.256 40.741 0.00 0.00 0.00 2.15
738 739 6.878389 GGGGAGAAGAGATTAGATGCTTTATG 59.122 42.308 0.00 0.00 0.00 1.90
739 740 6.791969 AGGGGAGAAGAGATTAGATGCTTTAT 59.208 38.462 0.00 0.00 0.00 1.40
740 741 6.146760 AGGGGAGAAGAGATTAGATGCTTTA 58.853 40.000 0.00 0.00 0.00 1.85
741 742 4.974501 AGGGGAGAAGAGATTAGATGCTTT 59.025 41.667 0.00 0.00 0.00 3.51
742 743 4.565817 AGGGGAGAAGAGATTAGATGCTT 58.434 43.478 0.00 0.00 0.00 3.91
743 744 4.212070 AGGGGAGAAGAGATTAGATGCT 57.788 45.455 0.00 0.00 0.00 3.79
744 745 6.619329 ATTAGGGGAGAAGAGATTAGATGC 57.381 41.667 0.00 0.00 0.00 3.91
750 751 9.426534 CCATTTAAAATTAGGGGAGAAGAGATT 57.573 33.333 0.00 0.00 0.00 2.40
751 752 8.007153 CCCATTTAAAATTAGGGGAGAAGAGAT 58.993 37.037 9.39 0.00 37.80 2.75
752 753 7.354312 CCCATTTAAAATTAGGGGAGAAGAGA 58.646 38.462 9.39 0.00 37.80 3.10
753 754 7.588497 CCCATTTAAAATTAGGGGAGAAGAG 57.412 40.000 9.39 0.00 37.80 2.85
776 777 1.273327 CACAAAGCATTCTTCACCCCC 59.727 52.381 0.00 0.00 0.00 5.40
777 778 2.238521 TCACAAAGCATTCTTCACCCC 58.761 47.619 0.00 0.00 0.00 4.95
778 779 4.525912 AATCACAAAGCATTCTTCACCC 57.474 40.909 0.00 0.00 0.00 4.61
779 780 5.176223 CACAAATCACAAAGCATTCTTCACC 59.824 40.000 0.00 0.00 0.00 4.02
780 781 5.978919 TCACAAATCACAAAGCATTCTTCAC 59.021 36.000 0.00 0.00 0.00 3.18
781 782 6.146601 TCACAAATCACAAAGCATTCTTCA 57.853 33.333 0.00 0.00 0.00 3.02
782 783 7.383029 TCATTCACAAATCACAAAGCATTCTTC 59.617 33.333 0.00 0.00 0.00 2.87
783 784 7.170320 GTCATTCACAAATCACAAAGCATTCTT 59.830 33.333 0.00 0.00 0.00 2.52
784 785 6.643770 GTCATTCACAAATCACAAAGCATTCT 59.356 34.615 0.00 0.00 0.00 2.40
785 786 6.421501 TGTCATTCACAAATCACAAAGCATTC 59.578 34.615 0.00 0.00 29.30 2.67
786 787 6.201425 GTGTCATTCACAAATCACAAAGCATT 59.799 34.615 0.00 0.00 45.51 3.56
787 788 5.693104 GTGTCATTCACAAATCACAAAGCAT 59.307 36.000 0.00 0.00 45.51 3.79
788 789 5.042593 GTGTCATTCACAAATCACAAAGCA 58.957 37.500 0.00 0.00 45.51 3.91
789 790 5.565723 GTGTCATTCACAAATCACAAAGC 57.434 39.130 0.00 0.00 45.51 3.51
807 808 3.548745 TCCTGATGGATGACATGTGTC 57.451 47.619 1.15 6.21 40.72 3.67
820 821 1.300465 CGCGAGACCCATCCTGATG 60.300 63.158 0.00 0.00 38.51 3.07
821 822 1.758514 ACGCGAGACCCATCCTGAT 60.759 57.895 15.93 0.00 0.00 2.90
822 823 2.362503 ACGCGAGACCCATCCTGA 60.363 61.111 15.93 0.00 0.00 3.86
823 824 2.202797 CACGCGAGACCCATCCTG 60.203 66.667 15.93 0.00 0.00 3.86
824 825 1.541310 TTTCACGCGAGACCCATCCT 61.541 55.000 15.93 0.00 0.00 3.24
825 826 1.079405 TTTCACGCGAGACCCATCC 60.079 57.895 15.93 0.00 0.00 3.51
826 827 1.359459 GGTTTCACGCGAGACCCATC 61.359 60.000 15.93 0.00 39.93 3.51
827 828 1.375523 GGTTTCACGCGAGACCCAT 60.376 57.895 15.93 0.00 39.93 4.00
828 829 2.029964 GGTTTCACGCGAGACCCA 59.970 61.111 15.93 0.00 39.93 4.51
829 830 2.027625 CAGGTTTCACGCGAGACCC 61.028 63.158 15.93 13.30 45.61 4.46
830 831 2.027625 CCAGGTTTCACGCGAGACC 61.028 63.158 15.93 14.63 44.97 3.85
831 832 1.282930 GACCAGGTTTCACGCGAGAC 61.283 60.000 15.93 5.19 0.00 3.36
832 833 1.006571 GACCAGGTTTCACGCGAGA 60.007 57.895 15.93 7.99 0.00 4.04
833 834 1.006102 AGACCAGGTTTCACGCGAG 60.006 57.895 15.93 4.59 0.00 5.03
834 835 1.006571 GAGACCAGGTTTCACGCGA 60.007 57.895 15.93 0.00 0.00 5.87
835 836 0.670546 ATGAGACCAGGTTTCACGCG 60.671 55.000 15.02 3.53 29.72 6.01
836 837 0.798776 CATGAGACCAGGTTTCACGC 59.201 55.000 15.02 0.00 29.72 5.34
837 838 1.001974 TCCATGAGACCAGGTTTCACG 59.998 52.381 15.02 7.10 29.72 4.35
838 839 2.859165 TCCATGAGACCAGGTTTCAC 57.141 50.000 15.02 0.00 29.72 3.18
839 840 4.387026 AATTCCATGAGACCAGGTTTCA 57.613 40.909 15.06 15.06 31.48 2.69
840 841 5.728637 AAAATTCCATGAGACCAGGTTTC 57.271 39.130 2.96 2.96 0.00 2.78
861 862 1.962807 CAGTCCAGGGATGTGCAAAAA 59.037 47.619 0.00 0.00 0.00 1.94
862 863 1.619654 CAGTCCAGGGATGTGCAAAA 58.380 50.000 0.00 0.00 0.00 2.44
863 864 0.251297 CCAGTCCAGGGATGTGCAAA 60.251 55.000 0.00 0.00 0.00 3.68
864 865 1.379916 CCAGTCCAGGGATGTGCAA 59.620 57.895 0.00 0.00 0.00 4.08
865 866 3.080641 CCAGTCCAGGGATGTGCA 58.919 61.111 0.00 0.00 0.00 4.57
866 867 2.439156 GCCAGTCCAGGGATGTGC 60.439 66.667 0.00 0.00 0.00 4.57
867 868 1.077930 CAGCCAGTCCAGGGATGTG 60.078 63.158 0.00 0.00 37.06 3.21
891 892 2.048127 GGACTGTCCGTGTCTGGC 60.048 66.667 11.71 0.00 35.04 4.85
1080 1084 1.483595 CCACCACCAGCCTCTTCTCA 61.484 60.000 0.00 0.00 0.00 3.27
1093 1097 1.448540 CGAGAGTCATGCCCACCAC 60.449 63.158 0.00 0.00 0.00 4.16
1212 1216 0.913205 TCCCCGTATGCTTTTAGGCA 59.087 50.000 0.00 0.00 46.63 4.75
1213 1217 1.880027 CATCCCCGTATGCTTTTAGGC 59.120 52.381 0.00 0.00 0.00 3.93
1223 1227 2.224769 CCATTAGTTGGCATCCCCGTAT 60.225 50.000 0.00 0.00 39.09 3.06
1416 1445 2.503061 CTCATGAGCCGGGTGGAG 59.497 66.667 12.94 11.61 37.49 3.86
1507 1536 3.259625 AGGGAGCTGTAACTGAAGAGAAC 59.740 47.826 0.00 0.00 0.00 3.01
1524 1602 3.480470 TGCTGAAGAAACTGAAAGGGAG 58.520 45.455 0.00 0.00 39.30 4.30
1553 1631 7.095691 TGCTTGCAAAAAGTATTATGAAACAGC 60.096 33.333 0.00 0.00 0.00 4.40
1554 1632 8.296799 TGCTTGCAAAAAGTATTATGAAACAG 57.703 30.769 0.00 0.00 0.00 3.16
1555 1633 8.547069 GTTGCTTGCAAAAAGTATTATGAAACA 58.453 29.630 9.75 0.00 0.00 2.83
1556 1634 7.735586 CGTTGCTTGCAAAAAGTATTATGAAAC 59.264 33.333 9.75 0.00 0.00 2.78
1573 1651 2.051345 CCCGTGTTCGTTGCTTGC 60.051 61.111 0.00 0.00 35.01 4.01
1692 1776 0.742281 ACGGAGACATGCATGTGCTC 60.742 55.000 35.92 32.64 41.95 4.26
1713 1797 1.677576 GTACCACCATCACCATGCATG 59.322 52.381 20.19 20.19 0.00 4.06
1714 1798 1.565759 AGTACCACCATCACCATGCAT 59.434 47.619 0.00 0.00 0.00 3.96
1715 1799 0.991146 AGTACCACCATCACCATGCA 59.009 50.000 0.00 0.00 0.00 3.96
1716 1800 1.340017 ACAGTACCACCATCACCATGC 60.340 52.381 0.00 0.00 0.00 4.06
1754 1838 2.594592 GTTGACTGGCCGCAACCT 60.595 61.111 19.53 0.00 38.68 3.50
1796 1880 2.787129 GTGTTAAAGCGAAACTGTTGGC 59.213 45.455 8.33 8.33 38.65 4.52
1804 1888 2.227865 GCCTGGATGTGTTAAAGCGAAA 59.772 45.455 0.00 0.00 0.00 3.46
1859 1944 2.947652 CAGATGTGGGGTTCATCATCAC 59.052 50.000 8.30 0.00 42.63 3.06
1869 1954 1.611419 CCTGATGCAGATGTGGGGT 59.389 57.895 0.00 0.00 32.44 4.95
1870 1955 1.826921 GCCTGATGCAGATGTGGGG 60.827 63.158 0.00 0.00 40.77 4.96
1894 1981 2.930950 TCCTTTGACCAGAAGTTGTGG 58.069 47.619 17.22 17.22 41.30 4.17
1949 2036 8.542953 GCTCGAATTGTCAAAAAGAAAAATCTT 58.457 29.630 0.00 0.00 0.00 2.40
1958 2046 6.998258 AAATCTGCTCGAATTGTCAAAAAG 57.002 33.333 0.00 0.00 0.00 2.27
2042 2146 1.127951 CGTACGCCATTTGTGAACTCC 59.872 52.381 0.52 0.00 0.00 3.85
2050 2154 5.766702 TTTAAGAGTACGTACGCCATTTG 57.233 39.130 23.39 0.00 0.00 2.32
2119 2223 1.148310 ACGGAGTTCAGTTGAATGCG 58.852 50.000 12.64 12.64 37.78 4.73
2162 2266 2.363711 GACTGCATATGTCGGGGCGA 62.364 60.000 4.29 0.00 0.00 5.54
2261 2365 5.771666 TGATGAGATCTGCAGAAACCTTTTT 59.228 36.000 22.50 0.18 0.00 1.94
2287 2391 7.640852 ACACGCAGAAAGTATATAGACTAGTG 58.359 38.462 0.00 7.32 0.00 2.74
2336 2445 5.855045 ACTAACTGAAACTCCACCACTAAG 58.145 41.667 0.00 0.00 0.00 2.18
2424 2533 2.719739 CAGCACCTGTTGGATTCAGAT 58.280 47.619 0.00 0.00 35.20 2.90
2453 2563 1.383664 TAGGCCTCCTGCTGAGCAT 60.384 57.895 9.68 0.00 39.98 3.79
2525 2635 0.723414 CGTCGCTCATGCATTTCACT 59.277 50.000 0.00 0.00 39.64 3.41
2584 2695 7.340743 TCAACCTTCCAAAAGTAAACTCATTGA 59.659 33.333 9.12 0.00 0.00 2.57
2892 3014 5.189180 GGTTCAATGCTCTGAAAGGATAGT 58.811 41.667 3.07 0.00 37.08 2.12
2895 3017 3.760684 GTGGTTCAATGCTCTGAAAGGAT 59.239 43.478 3.07 0.00 37.08 3.24
2930 3052 7.606456 GGTGGAAAGTATGATCAGTAAAACTCA 59.394 37.037 0.09 0.00 0.00 3.41
2931 3053 7.065923 GGGTGGAAAGTATGATCAGTAAAACTC 59.934 40.741 0.09 0.00 0.00 3.01
3022 3144 6.586463 CCTGATATACATCGTACGCTGAATTT 59.414 38.462 24.50 5.71 33.51 1.82
3051 3173 4.603989 TTGACTGGTACAACGTATTCCA 57.396 40.909 0.00 0.00 38.70 3.53
3059 3181 7.653647 TGGTGAAAAATATTGACTGGTACAAC 58.346 34.615 0.00 0.00 38.70 3.32
3070 3192 5.047802 AGTGGTCAGCTGGTGAAAAATATTG 60.048 40.000 15.13 0.00 36.74 1.90
3234 3356 6.540189 AGCGAAGATTTGTATAAAGCACTGAT 59.460 34.615 3.00 0.00 34.72 2.90
3253 3458 4.317418 GCTCGTTTGATACATGTAGCGAAG 60.317 45.833 21.35 15.58 0.00 3.79
3290 3498 6.419484 TCCTCAAGACAGTAACTCAATGAA 57.581 37.500 0.00 0.00 0.00 2.57
3291 3499 6.419484 TTCCTCAAGACAGTAACTCAATGA 57.581 37.500 0.00 0.00 0.00 2.57
3292 3500 7.678947 AATTCCTCAAGACAGTAACTCAATG 57.321 36.000 0.00 0.00 0.00 2.82
3533 3741 8.640651 TCTGAAACTCCAAAATGATTTTCATGA 58.359 29.630 0.00 0.00 40.71 3.07
3536 3744 7.780064 TGTCTGAAACTCCAAAATGATTTTCA 58.220 30.769 0.00 6.45 39.86 2.69
3603 3811 1.298157 CGCAGTCGATTTCTTGGGCA 61.298 55.000 0.00 0.00 38.10 5.36
3624 3832 2.501723 ACAAGTTGAGTCGCAGGGATAT 59.498 45.455 10.54 0.00 0.00 1.63
3672 3880 4.568956 GCACTTGCATTTCCCATTAACTT 58.431 39.130 0.00 0.00 41.59 2.66
4003 4212 8.599624 ACAGTCCCAATATCAAAGAATGATTT 57.400 30.769 0.00 0.00 46.85 2.17
4041 4250 7.770433 AGATGAATACCGATTGAAATTCAGTCA 59.230 33.333 16.73 0.48 40.56 3.41
4169 4380 0.249398 ATTTTCGGACGGAGGGAGTG 59.751 55.000 0.00 0.00 0.00 3.51
4170 4381 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
4171 4382 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
4172 4383 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
4173 4384 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
4174 4385 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
4175 4386 2.928116 GGACAAGTATTTTCGGACGGAG 59.072 50.000 0.00 0.00 0.00 4.63
4176 4387 2.564062 AGGACAAGTATTTTCGGACGGA 59.436 45.455 0.00 0.00 0.00 4.69
4177 4388 2.968675 AGGACAAGTATTTTCGGACGG 58.031 47.619 0.00 0.00 0.00 4.79
4178 4389 4.990257 TCTAGGACAAGTATTTTCGGACG 58.010 43.478 0.00 0.00 0.00 4.79
4179 4390 7.201617 CCATTTCTAGGACAAGTATTTTCGGAC 60.202 40.741 0.00 0.00 0.00 4.79
4180 4391 6.821665 CCATTTCTAGGACAAGTATTTTCGGA 59.178 38.462 0.00 0.00 0.00 4.55
4181 4392 6.821665 TCCATTTCTAGGACAAGTATTTTCGG 59.178 38.462 0.00 0.00 0.00 4.30
4182 4393 7.843490 TCCATTTCTAGGACAAGTATTTTCG 57.157 36.000 0.00 0.00 0.00 3.46
4188 4399 9.627123 CCATTTTATCCATTTCTAGGACAAGTA 57.373 33.333 0.00 0.00 38.13 2.24
4189 4400 8.336235 TCCATTTTATCCATTTCTAGGACAAGT 58.664 33.333 0.00 0.00 38.13 3.16
4190 4401 8.752005 TCCATTTTATCCATTTCTAGGACAAG 57.248 34.615 0.00 0.00 38.13 3.16
4191 4402 9.135189 CATCCATTTTATCCATTTCTAGGACAA 57.865 33.333 0.00 0.00 38.13 3.18
4192 4403 8.501904 TCATCCATTTTATCCATTTCTAGGACA 58.498 33.333 0.00 0.00 38.13 4.02
4193 4404 8.924511 TCATCCATTTTATCCATTTCTAGGAC 57.075 34.615 0.00 0.00 38.13 3.85
4233 4444 9.931698 TCCTAGAAATGGTTGTATCTAGACTTA 57.068 33.333 9.60 0.00 42.48 2.24
4234 4445 8.697292 GTCCTAGAAATGGTTGTATCTAGACTT 58.303 37.037 9.60 0.00 42.48 3.01
4235 4446 7.839705 TGTCCTAGAAATGGTTGTATCTAGACT 59.160 37.037 9.60 0.00 42.48 3.24
4236 4447 8.008513 TGTCCTAGAAATGGTTGTATCTAGAC 57.991 38.462 9.60 7.06 42.48 2.59
4237 4448 8.603898 TTGTCCTAGAAATGGTTGTATCTAGA 57.396 34.615 9.60 0.00 42.48 2.43
4238 4449 8.478877 ACTTGTCCTAGAAATGGTTGTATCTAG 58.521 37.037 0.00 0.00 40.55 2.43
4239 4450 8.375493 ACTTGTCCTAGAAATGGTTGTATCTA 57.625 34.615 0.00 0.00 0.00 1.98
4240 4451 7.259088 ACTTGTCCTAGAAATGGTTGTATCT 57.741 36.000 0.00 0.00 0.00 1.98
4241 4452 9.614792 AATACTTGTCCTAGAAATGGTTGTATC 57.385 33.333 0.00 0.00 0.00 2.24
4242 4453 9.975218 AAATACTTGTCCTAGAAATGGTTGTAT 57.025 29.630 0.00 0.00 0.00 2.29
4243 4454 9.444600 GAAATACTTGTCCTAGAAATGGTTGTA 57.555 33.333 0.00 0.00 0.00 2.41
4244 4455 7.393515 GGAAATACTTGTCCTAGAAATGGTTGT 59.606 37.037 0.00 0.00 0.00 3.32
4245 4456 7.414098 CGGAAATACTTGTCCTAGAAATGGTTG 60.414 40.741 0.00 0.00 0.00 3.77
4246 4457 6.598064 CGGAAATACTTGTCCTAGAAATGGTT 59.402 38.462 0.00 0.00 0.00 3.67
4247 4458 6.070424 TCGGAAATACTTGTCCTAGAAATGGT 60.070 38.462 0.00 0.00 0.00 3.55
4248 4459 6.346096 TCGGAAATACTTGTCCTAGAAATGG 58.654 40.000 0.00 0.00 0.00 3.16
4249 4460 7.464178 CGTTCGGAAATACTTGTCCTAGAAATG 60.464 40.741 0.00 0.00 0.00 2.32
4250 4461 6.534079 CGTTCGGAAATACTTGTCCTAGAAAT 59.466 38.462 0.00 0.00 0.00 2.17
4251 4462 5.865552 CGTTCGGAAATACTTGTCCTAGAAA 59.134 40.000 0.00 0.00 0.00 2.52
4252 4463 5.404946 CGTTCGGAAATACTTGTCCTAGAA 58.595 41.667 0.00 0.00 0.00 2.10
4253 4464 4.142315 CCGTTCGGAAATACTTGTCCTAGA 60.142 45.833 5.19 0.00 0.00 2.43
4254 4465 4.110482 CCGTTCGGAAATACTTGTCCTAG 58.890 47.826 5.19 0.00 0.00 3.02
4255 4466 3.763360 TCCGTTCGGAAATACTTGTCCTA 59.237 43.478 11.66 0.00 0.00 2.94
4256 4467 2.564062 TCCGTTCGGAAATACTTGTCCT 59.436 45.455 11.66 0.00 0.00 3.85
4257 4468 2.963432 TCCGTTCGGAAATACTTGTCC 58.037 47.619 11.66 0.00 0.00 4.02
4258 4469 3.370061 CCTTCCGTTCGGAAATACTTGTC 59.630 47.826 23.59 0.00 42.88 3.18
4259 4470 3.007182 TCCTTCCGTTCGGAAATACTTGT 59.993 43.478 23.59 0.00 42.88 3.16
4260 4471 3.592059 TCCTTCCGTTCGGAAATACTTG 58.408 45.455 23.59 12.93 42.88 3.16
4261 4472 3.858247 CTCCTTCCGTTCGGAAATACTT 58.142 45.455 23.59 0.00 42.88 2.24
4262 4473 2.418334 GCTCCTTCCGTTCGGAAATACT 60.418 50.000 23.59 0.00 42.88 2.12
4263 4474 1.931841 GCTCCTTCCGTTCGGAAATAC 59.068 52.381 23.59 12.19 42.88 1.89
4264 4475 1.551430 TGCTCCTTCCGTTCGGAAATA 59.449 47.619 23.59 14.95 42.88 1.40
4265 4476 0.323629 TGCTCCTTCCGTTCGGAAAT 59.676 50.000 23.59 0.00 42.88 2.17
4266 4477 0.323629 ATGCTCCTTCCGTTCGGAAA 59.676 50.000 23.59 11.77 42.88 3.13
4267 4478 0.391130 CATGCTCCTTCCGTTCGGAA 60.391 55.000 22.42 22.42 41.48 4.30
4268 4479 1.218047 CATGCTCCTTCCGTTCGGA 59.782 57.895 10.00 10.00 0.00 4.55
4269 4480 0.174845 TACATGCTCCTTCCGTTCGG 59.825 55.000 4.74 4.74 0.00 4.30
4270 4481 1.860950 CATACATGCTCCTTCCGTTCG 59.139 52.381 0.00 0.00 0.00 3.95
4271 4482 2.906354 ACATACATGCTCCTTCCGTTC 58.094 47.619 0.00 0.00 0.00 3.95
4272 4483 4.141711 ACATACATACATGCTCCTTCCGTT 60.142 41.667 0.00 0.00 0.00 4.44
4273 4484 3.388024 ACATACATACATGCTCCTTCCGT 59.612 43.478 0.00 0.00 0.00 4.69
4274 4485 3.995199 ACATACATACATGCTCCTTCCG 58.005 45.455 0.00 0.00 0.00 4.30
4275 4486 6.467677 ACATACATACATACATGCTCCTTCC 58.532 40.000 0.00 0.00 0.00 3.46
4276 4487 9.091784 CATACATACATACATACATGCTCCTTC 57.908 37.037 0.00 0.00 0.00 3.46
4277 4488 8.597167 ACATACATACATACATACATGCTCCTT 58.403 33.333 0.00 0.00 0.00 3.36
4278 4489 8.138928 ACATACATACATACATACATGCTCCT 57.861 34.615 0.00 0.00 0.00 3.69
4279 4490 8.034804 TGACATACATACATACATACATGCTCC 58.965 37.037 0.00 0.00 0.00 4.70
4280 4491 8.986477 TGACATACATACATACATACATGCTC 57.014 34.615 0.00 0.00 0.00 4.26
4281 4492 9.777297 TTTGACATACATACATACATACATGCT 57.223 29.630 0.00 0.00 0.00 3.79
4287 4498 9.051679 GCAGGTTTTGACATACATACATACATA 57.948 33.333 0.00 0.00 0.00 2.29
4288 4499 7.013274 GGCAGGTTTTGACATACATACATACAT 59.987 37.037 0.00 0.00 33.76 2.29
4289 4500 6.317642 GGCAGGTTTTGACATACATACATACA 59.682 38.462 0.00 0.00 33.76 2.29
4290 4501 6.317642 TGGCAGGTTTTGACATACATACATAC 59.682 38.462 0.00 0.00 40.88 2.39
4334 4545 9.087871 TCCAGTTCAATCCATCAAGAATTTTAA 57.912 29.630 0.00 0.00 0.00 1.52
4350 4561 1.780309 TCAACCAGGGTCCAGTTCAAT 59.220 47.619 0.00 0.00 0.00 2.57
4415 4626 2.928334 CCTATTTGTCCTCTGCATGCT 58.072 47.619 20.33 0.00 0.00 3.79
4440 4651 3.916359 TTGTGTTCTCAGGTGTTGGTA 57.084 42.857 0.00 0.00 0.00 3.25
4441 4652 2.799126 TTGTGTTCTCAGGTGTTGGT 57.201 45.000 0.00 0.00 0.00 3.67
4481 4692 5.249420 GTTCTTCCACCAGCTATTCTTCTT 58.751 41.667 0.00 0.00 0.00 2.52
4495 4706 4.561735 TGTTGATTTTCGGTTCTTCCAC 57.438 40.909 0.00 0.00 35.57 4.02
4548 4762 0.179006 GGCCCTCCCTTGCTCTAATG 60.179 60.000 0.00 0.00 0.00 1.90
4577 4791 8.603898 ATTTACTAAATAAGGAAAAGGGGGTG 57.396 34.615 0.00 0.00 41.47 4.61
4608 4823 9.860898 GCATGTGATATATGTGTCTGAATACTA 57.139 33.333 0.00 0.00 0.00 1.82
4644 4859 4.151512 GGCACGAACCATTGGTAAAATTTG 59.848 41.667 9.20 0.00 33.12 2.32
4645 4860 4.311606 GGCACGAACCATTGGTAAAATTT 58.688 39.130 9.20 0.00 33.12 1.82
4689 4904 2.435663 CAGTGTCCCATGTGGCCA 59.564 61.111 0.00 0.00 0.00 5.36
4705 4920 5.342017 TCCTCAAGACTAGATCCTTTTCCA 58.658 41.667 0.00 0.00 0.00 3.53
4710 4925 4.588528 GCTGATCCTCAAGACTAGATCCTT 59.411 45.833 0.00 0.00 35.34 3.36
4745 4960 5.937975 TCATCAGACAGTGGTGATTGATA 57.062 39.130 7.36 0.00 41.70 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.