Multiple sequence alignment - TraesCS1A01G208600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G208600 chr1A 100.000 7321 0 0 1 7321 370101892 370109212 0.000000e+00 13520.0
1 TraesCS1A01G208600 chr1A 96.875 32 1 0 3524 3555 144554982 144555013 4.000000e-03 54.7
2 TraesCS1A01G208600 chr1B 91.816 4252 229 60 2886 7053 400308495 400312711 0.000000e+00 5814.0
3 TraesCS1A01G208600 chr1B 87.532 2350 157 48 526 2801 400306208 400308495 0.000000e+00 2591.0
4 TraesCS1A01G208600 chr1B 85.492 386 48 6 1 379 400305779 400306163 5.320000e-106 396.0
5 TraesCS1A01G208600 chr1B 92.632 190 8 3 7133 7321 400312723 400312907 1.210000e-67 268.0
6 TraesCS1A01G208600 chr1D 93.674 3541 174 23 2827 6336 297533109 297536630 0.000000e+00 5252.0
7 TraesCS1A01G208600 chr1D 87.384 2489 133 59 459 2860 297530717 297533111 0.000000e+00 2689.0
8 TraesCS1A01G208600 chr1D 88.734 790 36 30 6571 7321 297536827 297537602 0.000000e+00 917.0
9 TraesCS1A01G208600 chr1D 86.400 375 44 6 10 379 297530348 297530720 3.180000e-108 403.0
10 TraesCS1A01G208600 chr2A 83.041 171 25 3 6123 6292 62609119 62608952 1.270000e-32 152.0
11 TraesCS1A01G208600 chr2A 83.898 118 19 0 7204 7321 665709982 665710099 6.000000e-21 113.0
12 TraesCS1A01G208600 chr2B 84.746 118 18 0 7204 7321 612688295 612688412 1.290000e-22 119.0
13 TraesCS1A01G208600 chr2D 85.586 111 16 0 7211 7321 520525648 520525758 4.640000e-22 117.0
14 TraesCS1A01G208600 chr7A 100.000 29 0 0 6329 6357 63471346 63471318 4.000000e-03 54.7
15 TraesCS1A01G208600 chr7A 96.875 32 1 0 3524 3555 126688027 126688058 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G208600 chr1A 370101892 370109212 7320 False 13520.00 13520 100.000 1 7321 1 chr1A.!!$F2 7320
1 TraesCS1A01G208600 chr1B 400305779 400312907 7128 False 2267.25 5814 89.368 1 7321 4 chr1B.!!$F1 7320
2 TraesCS1A01G208600 chr1D 297530348 297537602 7254 False 2315.25 5252 89.048 10 7321 4 chr1D.!!$F1 7311

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
391 402 0.041386 AGCGGTACTCCCTCCTTTCT 59.959 55.0 0.00 0.00 0.00 2.52 F
1072 1142 0.037232 ACTCCGCTTTTTCTCCGAGG 60.037 55.0 0.00 0.00 0.00 4.63 F
1591 1707 0.101399 CCCGTGATCTCTCTTGGACG 59.899 60.0 0.00 0.00 0.00 4.79 F
1592 1708 0.101399 CCGTGATCTCTCTTGGACGG 59.899 60.0 3.03 3.03 40.29 4.79 F
2389 2510 0.593773 ACCACACAACGATTTTGCGC 60.594 50.0 0.00 0.00 33.86 6.09 F
3740 3894 0.107945 AGACGCTGCCAGAAGGAATC 60.108 55.0 0.00 0.00 36.89 2.52 F
4258 4412 0.251341 AACCATCCAACAGCCCAGTC 60.251 55.0 0.00 0.00 0.00 3.51 F
4730 4898 0.457509 CTATGCAGAGATAGCCCGCG 60.458 60.0 0.88 0.00 0.00 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1468 1568 0.033991 TTCTCTCCAGTCTCCTCCCG 60.034 60.000 0.00 0.00 0.00 5.14 R
2011 2131 0.317160 TCTTGGGTCACTGCACGTAG 59.683 55.000 0.00 0.00 0.00 3.51 R
2629 2750 0.388907 ACGCTGCACATTCAATTGCC 60.389 50.000 0.00 0.00 38.00 4.52 R
3380 3534 1.072965 CCCTTGCTCTCTTGAGGTTGT 59.927 52.381 0.00 0.00 40.53 3.32 R
4231 4385 0.184692 TGTTGGATGGTTGCCAGACA 59.815 50.000 0.00 0.00 36.75 3.41 R
4692 4848 1.066573 AGTTCTTCTGGGATGCAGACG 60.067 52.381 0.00 0.00 0.00 4.18 R
6003 6188 0.692476 AGGCATGGCTGTGACAGTTA 59.308 50.000 22.69 3.94 33.43 2.24 R
6546 6757 0.392461 TAAGGACCAAGTGCGATGCC 60.392 55.000 0.00 0.00 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.539547 CCAAAGCATGTTCGGAATAGCG 60.540 50.000 0.00 0.00 0.00 4.26
47 48 3.496884 GCGTGAGATGTTGAAACCTACAA 59.503 43.478 0.00 0.00 0.00 2.41
123 124 5.490139 AATGCAGGAGTTTTGATACATCG 57.510 39.130 0.00 0.00 0.00 3.84
206 212 8.604640 TTTCTCTAAAATTGCATGCAAAATGA 57.395 26.923 34.84 24.28 39.55 2.57
207 213 8.780846 TTCTCTAAAATTGCATGCAAAATGAT 57.219 26.923 34.84 21.04 39.55 2.45
210 217 7.966111 TCTAAAATTGCATGCAAAATGATCAC 58.034 30.769 34.84 0.00 39.55 3.06
241 251 5.999205 TTCCTACGGTTTACAATCCTACA 57.001 39.130 0.00 0.00 0.00 2.74
253 263 8.813282 GTTTACAATCCTACAAAACCAAACAAG 58.187 33.333 0.00 0.00 0.00 3.16
265 275 7.065683 ACAAAACCAAACAAGCATTCCTTAAAG 59.934 33.333 0.00 0.00 31.00 1.85
271 281 7.118245 CCAAACAAGCATTCCTTAAAGAATTCC 59.882 37.037 0.65 0.00 34.19 3.01
301 311 4.892345 TCTCATCAAACCAAACATGTTCCA 59.108 37.500 12.39 0.00 0.00 3.53
316 326 4.036941 TGTTCCATACAACCCTAAACCC 57.963 45.455 0.00 0.00 32.64 4.11
317 327 3.245336 TGTTCCATACAACCCTAAACCCC 60.245 47.826 0.00 0.00 32.64 4.95
322 332 4.383173 CATACAACCCTAAACCCCGATAC 58.617 47.826 0.00 0.00 0.00 2.24
326 337 3.056201 ACCCTAAACCCCGATACATCT 57.944 47.619 0.00 0.00 0.00 2.90
327 338 3.390819 ACCCTAAACCCCGATACATCTT 58.609 45.455 0.00 0.00 0.00 2.40
342 353 6.873605 CGATACATCTTGCCTCACCATATAAA 59.126 38.462 0.00 0.00 0.00 1.40
373 384 7.652909 TCAACTTAAGATTTGAACATGCCAAAG 59.347 33.333 10.09 6.89 37.00 2.77
379 390 0.878416 TGAACATGCCAAAGCGGTAC 59.122 50.000 0.00 0.00 44.31 3.34
380 391 1.165270 GAACATGCCAAAGCGGTACT 58.835 50.000 0.00 0.00 44.31 2.73
381 392 1.130561 GAACATGCCAAAGCGGTACTC 59.869 52.381 0.00 0.00 44.31 2.59
382 393 0.676782 ACATGCCAAAGCGGTACTCC 60.677 55.000 0.00 0.00 44.31 3.85
383 394 1.077716 ATGCCAAAGCGGTACTCCC 60.078 57.895 0.00 0.00 44.31 4.30
384 395 1.562672 ATGCCAAAGCGGTACTCCCT 61.563 55.000 0.00 0.00 44.31 4.20
385 396 1.449778 GCCAAAGCGGTACTCCCTC 60.450 63.158 0.00 0.00 36.97 4.30
386 397 1.221021 CCAAAGCGGTACTCCCTCC 59.779 63.158 0.00 0.00 0.00 4.30
387 398 1.265454 CCAAAGCGGTACTCCCTCCT 61.265 60.000 0.00 0.00 0.00 3.69
388 399 0.613777 CAAAGCGGTACTCCCTCCTT 59.386 55.000 0.00 0.00 0.00 3.36
389 400 1.003233 CAAAGCGGTACTCCCTCCTTT 59.997 52.381 0.00 0.00 34.59 3.11
390 401 0.903236 AAGCGGTACTCCCTCCTTTC 59.097 55.000 0.00 0.00 0.00 2.62
391 402 0.041386 AGCGGTACTCCCTCCTTTCT 59.959 55.000 0.00 0.00 0.00 2.52
392 403 1.287146 AGCGGTACTCCCTCCTTTCTA 59.713 52.381 0.00 0.00 0.00 2.10
393 404 2.091222 AGCGGTACTCCCTCCTTTCTAT 60.091 50.000 0.00 0.00 0.00 1.98
394 405 2.036089 GCGGTACTCCCTCCTTTCTATG 59.964 54.545 0.00 0.00 0.00 2.23
395 406 3.563223 CGGTACTCCCTCCTTTCTATGA 58.437 50.000 0.00 0.00 0.00 2.15
396 407 4.153411 CGGTACTCCCTCCTTTCTATGAT 58.847 47.826 0.00 0.00 0.00 2.45
397 408 4.021894 CGGTACTCCCTCCTTTCTATGATG 60.022 50.000 0.00 0.00 0.00 3.07
398 409 4.902448 GGTACTCCCTCCTTTCTATGATGT 59.098 45.833 0.00 0.00 0.00 3.06
399 410 6.075984 GGTACTCCCTCCTTTCTATGATGTA 58.924 44.000 0.00 0.00 0.00 2.29
400 411 6.553852 GGTACTCCCTCCTTTCTATGATGTAA 59.446 42.308 0.00 0.00 0.00 2.41
401 412 7.070821 GGTACTCCCTCCTTTCTATGATGTAAA 59.929 40.741 0.00 0.00 0.00 2.01
402 413 7.510675 ACTCCCTCCTTTCTATGATGTAAAA 57.489 36.000 0.00 0.00 0.00 1.52
403 414 7.339482 ACTCCCTCCTTTCTATGATGTAAAAC 58.661 38.462 0.00 0.00 0.00 2.43
404 415 7.037586 ACTCCCTCCTTTCTATGATGTAAAACA 60.038 37.037 0.00 0.00 0.00 2.83
405 416 7.872138 TCCCTCCTTTCTATGATGTAAAACAT 58.128 34.615 0.00 0.00 42.43 2.71
406 417 8.336235 TCCCTCCTTTCTATGATGTAAAACATT 58.664 33.333 0.00 0.00 39.27 2.71
407 418 8.971073 CCCTCCTTTCTATGATGTAAAACATTT 58.029 33.333 0.00 0.00 39.27 2.32
426 437 2.166821 TTTTGGCACCACATCAATGC 57.833 45.000 0.00 0.00 38.68 3.56
430 441 3.910817 GCACCACATCAATGCCAAA 57.089 47.368 0.00 0.00 33.06 3.28
431 442 2.166821 GCACCACATCAATGCCAAAA 57.833 45.000 0.00 0.00 33.06 2.44
432 443 2.492012 GCACCACATCAATGCCAAAAA 58.508 42.857 0.00 0.00 33.06 1.94
453 464 6.920569 AAAACGTCTTACATTATAGGGCAG 57.079 37.500 0.00 0.00 0.00 4.85
454 465 5.864418 AACGTCTTACATTATAGGGCAGA 57.136 39.130 0.00 0.00 0.00 4.26
455 466 6.420913 AACGTCTTACATTATAGGGCAGAT 57.579 37.500 0.00 0.00 0.00 2.90
456 467 5.784177 ACGTCTTACATTATAGGGCAGATG 58.216 41.667 0.00 0.00 0.00 2.90
457 468 5.171476 CGTCTTACATTATAGGGCAGATGG 58.829 45.833 0.00 0.00 0.00 3.51
458 469 5.491982 GTCTTACATTATAGGGCAGATGGG 58.508 45.833 0.00 0.00 0.00 4.00
459 470 4.536090 TCTTACATTATAGGGCAGATGGGG 59.464 45.833 0.00 0.00 0.00 4.96
460 471 2.718456 ACATTATAGGGCAGATGGGGT 58.282 47.619 0.00 0.00 0.00 4.95
461 472 2.376518 ACATTATAGGGCAGATGGGGTG 59.623 50.000 0.00 0.00 0.00 4.61
591 602 0.250467 AGCACACCACATGACTGACC 60.250 55.000 0.00 0.00 0.00 4.02
612 623 4.157289 ACCAGCAGTTTGATTGATTGCTAG 59.843 41.667 0.00 0.00 42.75 3.42
643 654 5.346281 CGGCAAAACAAAGAAACAGTGTTTA 59.654 36.000 20.90 0.00 42.96 2.01
646 657 7.532546 GGCAAAACAAAGAAACAGTGTTTAAAC 59.467 33.333 20.90 11.54 42.96 2.01
657 695 5.875930 ACAGTGTTTAAACTACACAACTGC 58.124 37.500 23.63 0.00 46.42 4.40
660 698 5.065988 AGTGTTTAAACTACACAACTGCTGG 59.934 40.000 18.72 0.00 46.42 4.85
799 838 1.940883 TATCCCTCACGCGTGTGGTC 61.941 60.000 41.56 0.00 46.42 4.02
836 875 2.035832 GGGTTGCAAGCACATGTTTACT 59.964 45.455 28.22 0.00 0.00 2.24
847 886 6.167685 AGCACATGTTTACTCCGTTTGTATA 58.832 36.000 0.00 0.00 0.00 1.47
849 888 7.335924 AGCACATGTTTACTCCGTTTGTATATT 59.664 33.333 0.00 0.00 0.00 1.28
850 889 7.966204 GCACATGTTTACTCCGTTTGTATATTT 59.034 33.333 0.00 0.00 0.00 1.40
851 890 9.834628 CACATGTTTACTCCGTTTGTATATTTT 57.165 29.630 0.00 0.00 0.00 1.82
852 891 9.834628 ACATGTTTACTCCGTTTGTATATTTTG 57.165 29.630 0.00 0.00 0.00 2.44
854 893 8.618702 TGTTTACTCCGTTTGTATATTTTGGA 57.381 30.769 0.00 0.00 0.00 3.53
855 894 9.233649 TGTTTACTCCGTTTGTATATTTTGGAT 57.766 29.630 0.00 0.00 0.00 3.41
894 954 1.810151 TCGCCTTCTTGGTTAATGCAC 59.190 47.619 0.00 0.00 38.35 4.57
899 959 1.544724 TCTTGGTTAATGCACCCTGC 58.455 50.000 0.00 0.00 45.29 4.85
942 1002 4.936802 ACCACTCTGTCCAATACTCTACT 58.063 43.478 0.00 0.00 0.00 2.57
943 1003 6.069556 AGACCACTCTGTCCAATACTCTACTA 60.070 42.308 0.00 0.00 35.83 1.82
944 1004 6.123651 ACCACTCTGTCCAATACTCTACTAG 58.876 44.000 0.00 0.00 0.00 2.57
945 1005 6.123651 CCACTCTGTCCAATACTCTACTAGT 58.876 44.000 0.00 0.00 42.62 2.57
946 1006 7.092533 ACCACTCTGTCCAATACTCTACTAGTA 60.093 40.741 1.89 1.89 44.76 1.82
947 1007 7.227116 CCACTCTGTCCAATACTCTACTAGTAC 59.773 44.444 0.00 0.00 43.47 2.73
990 1056 8.198109 ACTCAAATAATACTACTAGTGCAGTGG 58.802 37.037 5.39 3.28 41.37 4.00
996 1062 3.616219 ACTACTAGTGCAGTGGAGAGAG 58.384 50.000 12.40 5.77 37.96 3.20
1000 1066 0.607620 AGTGCAGTGGAGAGAGAAGC 59.392 55.000 0.00 0.00 0.00 3.86
1070 1140 0.320421 CCACTCCGCTTTTTCTCCGA 60.320 55.000 0.00 0.00 0.00 4.55
1072 1142 0.037232 ACTCCGCTTTTTCTCCGAGG 60.037 55.000 0.00 0.00 0.00 4.63
1201 1284 0.613777 GTCCCGTTCCACTCCATTCT 59.386 55.000 0.00 0.00 0.00 2.40
1228 1311 0.178992 TCCACCAAGGAAGCAACCAG 60.179 55.000 0.00 0.00 45.65 4.00
1233 1316 0.603707 CAAGGAAGCAACCAGAGCGA 60.604 55.000 2.26 0.00 37.01 4.93
1256 1341 4.436998 CCGACGCTGACCACCCTC 62.437 72.222 0.00 0.00 0.00 4.30
1257 1342 3.680786 CGACGCTGACCACCCTCA 61.681 66.667 0.00 0.00 0.00 3.86
1337 1426 1.406903 AAACAAGAGCAAAGCAGCCT 58.593 45.000 0.00 0.00 34.23 4.58
1338 1427 0.957362 AACAAGAGCAAAGCAGCCTC 59.043 50.000 0.00 0.00 34.23 4.70
1533 1633 4.399395 CGGCTGCTGAGGCTTCCA 62.399 66.667 1.17 0.00 42.73 3.53
1590 1706 0.461961 CCCCGTGATCTCTCTTGGAC 59.538 60.000 0.00 0.00 0.00 4.02
1591 1707 0.101399 CCCGTGATCTCTCTTGGACG 59.899 60.000 0.00 0.00 0.00 4.79
1592 1708 0.101399 CCGTGATCTCTCTTGGACGG 59.899 60.000 3.03 3.03 40.29 4.79
1593 1709 1.095600 CGTGATCTCTCTTGGACGGA 58.904 55.000 0.00 0.00 0.00 4.69
1594 1710 1.678627 CGTGATCTCTCTTGGACGGAT 59.321 52.381 0.00 0.00 0.00 4.18
1595 1711 2.542618 CGTGATCTCTCTTGGACGGATG 60.543 54.545 0.00 0.00 0.00 3.51
1596 1712 2.034878 TGATCTCTCTTGGACGGATGG 58.965 52.381 0.00 0.00 0.00 3.51
1597 1713 1.342819 GATCTCTCTTGGACGGATGGG 59.657 57.143 0.00 0.00 0.00 4.00
1631 1747 2.361104 TTGGTTGGGATCTGCGGC 60.361 61.111 0.00 0.00 0.00 6.53
1665 1781 2.362717 TGGGGATTCGTTTTGGTTGTTC 59.637 45.455 0.00 0.00 0.00 3.18
1734 1853 2.551459 GTGAGTTCTCATGCTTGCAACT 59.449 45.455 13.33 13.33 31.82 3.16
1740 1859 6.409704 AGTTCTCATGCTTGCAACTAAGATA 58.590 36.000 12.34 0.00 29.05 1.98
1741 1860 6.538021 AGTTCTCATGCTTGCAACTAAGATAG 59.462 38.462 12.34 0.00 29.05 2.08
1756 1875 7.759489 ACTAAGATAGGAGCTTGTCAGATAG 57.241 40.000 0.00 0.00 0.00 2.08
1757 1876 7.294584 ACTAAGATAGGAGCTTGTCAGATAGT 58.705 38.462 0.00 0.00 0.00 2.12
1758 1877 8.441572 ACTAAGATAGGAGCTTGTCAGATAGTA 58.558 37.037 0.00 0.00 0.00 1.82
1761 1880 8.801882 AGATAGGAGCTTGTCAGATAGTATAC 57.198 38.462 0.00 0.00 0.00 1.47
1772 1891 7.708051 TGTCAGATAGTATACTCTTGTTGAGC 58.292 38.462 9.12 0.00 46.41 4.26
1778 1897 1.800805 TACTCTTGTTGAGCAGCTGC 58.199 50.000 31.53 31.53 46.41 5.25
1837 1956 2.554032 ACAGGAACTTCCATTTGCTTCG 59.446 45.455 10.57 0.00 39.61 3.79
1849 1968 7.681939 TCCATTTGCTTCGTTAAGATTTACT 57.318 32.000 0.00 0.00 34.37 2.24
1850 1969 7.748847 TCCATTTGCTTCGTTAAGATTTACTC 58.251 34.615 0.00 0.00 34.37 2.59
1851 1970 7.389330 TCCATTTGCTTCGTTAAGATTTACTCA 59.611 33.333 0.00 0.00 34.37 3.41
1852 1971 7.481798 CCATTTGCTTCGTTAAGATTTACTCAC 59.518 37.037 0.00 0.00 34.37 3.51
1979 2099 6.012683 AGAGAGATATCATTCCTTCCCCATTG 60.013 42.308 5.32 0.00 0.00 2.82
2010 2130 4.093556 GGCTGCTAACTTGTGTTGATCTAC 59.906 45.833 0.00 0.00 37.59 2.59
2011 2131 4.093556 GCTGCTAACTTGTGTTGATCTACC 59.906 45.833 4.82 0.00 37.59 3.18
2012 2132 5.482908 CTGCTAACTTGTGTTGATCTACCT 58.517 41.667 4.82 0.00 37.59 3.08
2013 2133 6.599356 TGCTAACTTGTGTTGATCTACCTA 57.401 37.500 4.82 0.00 37.59 3.08
2066 2187 3.869246 ACGAAACAGTACAAGACACAAGG 59.131 43.478 0.00 0.00 0.00 3.61
2172 2293 3.004734 GCCTAATGCGCATGGTCTATTTT 59.995 43.478 26.09 8.08 0.00 1.82
2191 2312 4.162690 GCCGCGACCCCAGATTCT 62.163 66.667 8.23 0.00 0.00 2.40
2328 2449 6.238184 GGTTCAAGTTGCTTTTGAATTTCAGG 60.238 38.462 11.89 0.00 43.90 3.86
2336 2457 3.624326 TTTGAATTTCAGGTGCTGTCG 57.376 42.857 0.00 0.00 32.61 4.35
2338 2459 1.160137 GAATTTCAGGTGCTGTCGCT 58.840 50.000 0.00 0.00 36.97 4.93
2340 2461 2.472695 ATTTCAGGTGCTGTCGCTTA 57.527 45.000 0.00 0.00 36.97 3.09
2382 2503 6.542574 TTTATACGAAAACCACACAACGAT 57.457 33.333 0.00 0.00 0.00 3.73
2389 2510 0.593773 ACCACACAACGATTTTGCGC 60.594 50.000 0.00 0.00 33.86 6.09
2408 2529 6.435430 TGCGCAGTGTTATAAGAAAATCAT 57.565 33.333 5.66 0.00 0.00 2.45
2425 2546 9.491675 AGAAAATCATAAGAGATGCTGATACTG 57.508 33.333 0.00 0.00 0.00 2.74
2442 2563 6.036470 TGATACTGTCAGTTCGTTGATCATC 58.964 40.000 11.54 5.33 31.80 2.92
2475 2596 3.491447 GCTTTCACTGGCTTGTTTCACAT 60.491 43.478 0.00 0.00 0.00 3.21
2506 2627 5.334182 GCTTACAGTTTAGAAGTGCAACCTC 60.334 44.000 0.00 0.00 37.80 3.85
2529 2650 3.450457 TGTGGCTGGATGAGTTTGTTTTT 59.550 39.130 0.00 0.00 0.00 1.94
2634 2755 7.624360 TGAATGTTTAAGATAGTTCGGCAAT 57.376 32.000 0.00 0.00 0.00 3.56
2635 2756 8.050778 TGAATGTTTAAGATAGTTCGGCAATT 57.949 30.769 0.00 0.00 0.00 2.32
2645 2766 1.987770 GTTCGGCAATTGAATGTGCAG 59.012 47.619 10.34 9.20 42.74 4.41
2647 2768 1.407721 CGGCAATTGAATGTGCAGCG 61.408 55.000 10.34 5.96 42.74 5.18
2650 2771 1.342555 CAATTGAATGTGCAGCGTGG 58.657 50.000 0.00 0.00 0.00 4.94
2788 2910 9.673454 AAAAAGATGATGTAAGTTAACGAAACC 57.327 29.630 0.00 0.00 39.03 3.27
2804 2926 6.954487 ACGAAACCAAGAAAATTAAGGTCT 57.046 33.333 0.00 0.00 0.00 3.85
2816 2938 9.674068 AGAAAATTAAGGTCTCAGGAGTAAATC 57.326 33.333 0.00 0.00 0.00 2.17
2840 2962 6.260050 TCCGCTTTCATATTTCATTGACTACC 59.740 38.462 0.00 0.00 0.00 3.18
2847 2969 6.312672 TCATATTTCATTGACTACCGTGTGTG 59.687 38.462 0.00 0.00 0.00 3.82
2875 3028 8.899427 TGAAACCATTATTTTTCAAATCTGCA 57.101 26.923 0.00 0.00 38.48 4.41
3215 3369 4.697352 AGCTTGAACCACAGTGAATATGAC 59.303 41.667 0.62 0.00 0.00 3.06
3295 3449 5.007430 GTCCACATGATGATTGCAAGAGTAG 59.993 44.000 4.94 0.00 0.00 2.57
3296 3450 4.261072 CCACATGATGATTGCAAGAGTAGC 60.261 45.833 4.94 0.00 0.00 3.58
3632 3786 9.237846 GAAACTAATTTTGTTGAAGAGACAAGG 57.762 33.333 0.00 0.00 38.17 3.61
3710 3864 3.967326 TCTTCTGGAGGAAAGACAAGTCA 59.033 43.478 2.72 0.00 33.07 3.41
3724 3878 8.634475 AAAGACAAGTCAAAAATAAAGCAGAC 57.366 30.769 2.72 0.00 0.00 3.51
3740 3894 0.107945 AGACGCTGCCAGAAGGAATC 60.108 55.000 0.00 0.00 36.89 2.52
3743 3897 0.449388 CGCTGCCAGAAGGAATCAAC 59.551 55.000 0.00 0.00 36.89 3.18
3778 3932 8.125448 GCCTGTTAGCAAAATAGTTATTCTGAG 58.875 37.037 0.00 0.00 0.00 3.35
3789 3943 4.273318 AGTTATTCTGAGGCCAAATCCAC 58.727 43.478 5.01 0.65 0.00 4.02
3809 3963 4.436050 CCACGAAAAGGAATTGATCAGACG 60.436 45.833 0.00 0.00 0.00 4.18
3840 3994 5.530171 AGCAGTGCAAGATATTTACATCAGG 59.470 40.000 19.20 0.00 0.00 3.86
3883 4037 2.234908 CAGAGTACAGTGGGAGGGAAAG 59.765 54.545 0.00 0.00 0.00 2.62
3884 4038 2.158143 AGAGTACAGTGGGAGGGAAAGT 60.158 50.000 0.00 0.00 0.00 2.66
3887 4041 0.396811 ACAGTGGGAGGGAAAGTTCG 59.603 55.000 0.00 0.00 0.00 3.95
3908 4062 9.586435 AGTTCGAAATTTTCAATCAAAGAAGTT 57.414 25.926 0.00 0.00 0.00 2.66
3932 4086 4.080638 AGGAGGAGATTCAGAATTGTGACC 60.081 45.833 4.50 3.43 0.00 4.02
3986 4140 3.668447 TGCAGATGACCTTCAAAGAGTC 58.332 45.455 0.00 0.00 0.00 3.36
4013 4167 2.181125 TGGCATTCCATGATTGCAACT 58.819 42.857 0.00 0.00 39.67 3.16
4020 4174 5.902613 TTCCATGATTGCAACTAAGAAGG 57.097 39.130 0.00 0.00 0.00 3.46
4025 4179 4.724399 TGATTGCAACTAAGAAGGGTTCA 58.276 39.130 0.00 0.00 0.00 3.18
4029 4183 2.437413 CAACTAAGAAGGGTTCAGGGC 58.563 52.381 0.00 0.00 0.00 5.19
4037 4191 2.040544 GGGTTCAGGGCATCACACG 61.041 63.158 0.00 0.00 0.00 4.49
4148 4302 3.252974 AGCGAGACTGAAATTAGTGGG 57.747 47.619 0.00 0.00 0.00 4.61
4156 4310 5.363005 AGACTGAAATTAGTGGGCGTATAGT 59.637 40.000 0.00 0.00 0.00 2.12
4159 4313 5.535333 TGAAATTAGTGGGCGTATAGTAGC 58.465 41.667 0.00 0.00 0.00 3.58
4160 4314 5.303589 TGAAATTAGTGGGCGTATAGTAGCT 59.696 40.000 0.00 0.00 0.00 3.32
4231 4385 9.959721 AACGGATATGCTAAAGGATAATAATGT 57.040 29.630 0.00 0.00 32.16 2.71
4242 4396 5.133221 AGGATAATAATGTGTCTGGCAACC 58.867 41.667 0.00 0.00 0.00 3.77
4257 4411 0.540365 CAACCATCCAACAGCCCAGT 60.540 55.000 0.00 0.00 0.00 4.00
4258 4412 0.251341 AACCATCCAACAGCCCAGTC 60.251 55.000 0.00 0.00 0.00 3.51
4307 4461 0.900182 TCCCTCACTGCGATGTGTCT 60.900 55.000 7.83 0.00 38.90 3.41
4318 4472 2.034053 GCGATGTGTCTTCTCCTAGGAG 59.966 54.545 30.15 30.15 43.21 3.69
4324 4478 2.091775 TGTCTTCTCCTAGGAGTAGCCC 60.092 54.545 33.14 25.12 42.49 5.19
4335 4489 2.838813 AGGAGTAGCCCTAGTGGAAAAC 59.161 50.000 1.75 0.00 37.37 2.43
4339 4493 2.396157 GCCCTAGTGGAAAACGCCG 61.396 63.158 1.75 0.00 35.39 6.46
4401 4555 3.181429 ACCCATGGTTGACAGTGAAGAAT 60.181 43.478 11.73 0.00 27.29 2.40
4415 4569 3.999663 GTGAAGAATCCACACAAGAGAGG 59.000 47.826 0.00 0.00 34.81 3.69
4436 4590 2.428890 GAGTCAATCATGGGACGACTCT 59.571 50.000 19.46 1.90 44.67 3.24
4438 4592 1.405463 TCAATCATGGGACGACTCTCG 59.595 52.381 0.00 0.00 46.93 4.04
4444 4598 2.766400 GGGACGACTCTCGGAGCAG 61.766 68.421 0.00 1.82 45.59 4.24
4489 4643 2.163010 CAGTTGATGATCAGGTGGTTGC 59.837 50.000 0.09 0.00 0.00 4.17
4534 4688 4.165372 AGAAGAACCACAAGAAGGTAACCA 59.835 41.667 0.00 0.00 38.76 3.67
4559 4713 6.470278 TCTATAGTTGCATGAATCATCAGGG 58.530 40.000 0.00 0.00 39.39 4.45
4564 4718 3.018856 TGCATGAATCATCAGGGTGAAC 58.981 45.455 0.00 0.00 39.39 3.18
4624 4780 4.569943 TCTAGAATCTTGTGCAGGACAAC 58.430 43.478 2.84 0.00 39.78 3.32
4641 4797 5.417894 AGGACAACGAGATGTTACTGATGTA 59.582 40.000 0.00 0.00 39.29 2.29
4643 4799 5.103000 ACAACGAGATGTTACTGATGTAGC 58.897 41.667 0.00 0.00 39.29 3.58
4648 4804 4.926244 AGATGTTACTGATGTAGCAGACG 58.074 43.478 3.90 0.00 41.78 4.18
4655 4811 3.249091 CTGATGTAGCAGACGCCATATC 58.751 50.000 0.00 0.00 39.83 1.63
4664 4820 3.681897 GCAGACGCCATATCTATTGAAGG 59.318 47.826 0.00 0.00 0.00 3.46
4680 4836 8.686334 TCTATTGAAGGAATTGGCAAAATAGAC 58.314 33.333 17.78 6.18 32.97 2.59
4691 4847 6.899393 TGGCAAAATAGACTGTTCTGAAAT 57.101 33.333 0.00 0.00 32.75 2.17
4692 4848 6.913170 TGGCAAAATAGACTGTTCTGAAATC 58.087 36.000 0.00 0.00 32.75 2.17
4693 4849 6.024049 GGCAAAATAGACTGTTCTGAAATCG 58.976 40.000 0.00 0.00 32.75 3.34
4700 4856 3.668447 ACTGTTCTGAAATCGTCTGCAT 58.332 40.909 0.00 0.00 0.00 3.96
4702 4858 3.002791 TGTTCTGAAATCGTCTGCATCC 58.997 45.455 0.00 0.00 0.00 3.51
4730 4898 0.457509 CTATGCAGAGATAGCCCGCG 60.458 60.000 0.88 0.00 0.00 6.46
4749 4930 1.746991 GCCAGTAAGCTCCCAGCAC 60.747 63.158 0.00 0.00 45.56 4.40
4753 4934 1.059913 AGTAAGCTCCCAGCACTGTT 58.940 50.000 0.00 0.00 45.56 3.16
4763 4944 3.068024 TCCCAGCACTGTTTCATGTTTTC 59.932 43.478 0.00 0.00 0.00 2.29
4774 4955 5.792962 TGTTTCATGTTTTCGTTGCGATATC 59.207 36.000 0.00 0.00 35.23 1.63
4777 4958 6.836577 TCATGTTTTCGTTGCGATATCATA 57.163 33.333 3.12 0.00 35.23 2.15
4779 4960 7.290118 TCATGTTTTCGTTGCGATATCATATG 58.710 34.615 3.12 0.00 35.23 1.78
4781 4962 7.010697 TGTTTTCGTTGCGATATCATATGTT 57.989 32.000 1.90 0.00 35.23 2.71
4782 4963 8.132604 TGTTTTCGTTGCGATATCATATGTTA 57.867 30.769 1.90 0.00 35.23 2.41
4783 4964 8.604890 TGTTTTCGTTGCGATATCATATGTTAA 58.395 29.630 1.90 0.00 35.23 2.01
4784 4965 8.879299 GTTTTCGTTGCGATATCATATGTTAAC 58.121 33.333 1.90 0.00 35.23 2.01
4787 4968 6.697892 TCGTTGCGATATCATATGTTAACACA 59.302 34.615 11.22 0.00 37.31 3.72
4867 5050 6.475504 TCAAATCTTGTTGAGCTATCCTGAA 58.524 36.000 0.00 0.00 32.56 3.02
4921 5104 1.421268 ACACCTGAACCAAGAGCATCA 59.579 47.619 0.00 0.00 37.82 3.07
4922 5105 2.158623 ACACCTGAACCAAGAGCATCAA 60.159 45.455 0.00 0.00 37.82 2.57
4952 5135 0.905357 CTCAGATTGTTCCCCCGAGT 59.095 55.000 0.00 0.00 0.00 4.18
4966 5149 2.432444 CCCGAGTTAAGCCATGACAAA 58.568 47.619 0.00 0.00 0.00 2.83
4985 5168 1.729586 ACAAGAACAGCCCAGTCCTA 58.270 50.000 0.00 0.00 0.00 2.94
4987 5170 3.450904 ACAAGAACAGCCCAGTCCTATA 58.549 45.455 0.00 0.00 0.00 1.31
5054 5237 6.269315 TGCGAAAACATTAAACAATGTGAGT 58.731 32.000 3.91 0.00 42.13 3.41
5055 5238 6.198029 TGCGAAAACATTAAACAATGTGAGTG 59.802 34.615 3.91 0.00 42.13 3.51
5056 5239 6.416455 GCGAAAACATTAAACAATGTGAGTGA 59.584 34.615 3.91 0.00 42.13 3.41
5057 5240 7.357532 GCGAAAACATTAAACAATGTGAGTGAG 60.358 37.037 3.91 0.00 42.13 3.51
5073 5256 6.663093 TGTGAGTGAGCCCAATTTACATAAAT 59.337 34.615 0.00 0.00 37.49 1.40
5074 5257 7.831690 TGTGAGTGAGCCCAATTTACATAAATA 59.168 33.333 0.00 0.00 35.00 1.40
5075 5258 8.345565 GTGAGTGAGCCCAATTTACATAAATAG 58.654 37.037 0.00 0.00 35.00 1.73
5078 5261 9.071276 AGTGAGCCCAATTTACATAAATAGATG 57.929 33.333 0.00 0.00 35.00 2.90
5079 5262 7.809806 GTGAGCCCAATTTACATAAATAGATGC 59.190 37.037 0.00 0.43 35.00 3.91
5081 5264 8.248904 AGCCCAATTTACATAAATAGATGCAA 57.751 30.769 0.00 0.00 35.00 4.08
5082 5265 8.143835 AGCCCAATTTACATAAATAGATGCAAC 58.856 33.333 0.00 0.00 35.00 4.17
5083 5266 7.384932 GCCCAATTTACATAAATAGATGCAACC 59.615 37.037 0.00 0.00 35.00 3.77
5084 5267 8.641541 CCCAATTTACATAAATAGATGCAACCT 58.358 33.333 0.00 0.00 35.00 3.50
5148 5333 3.185246 AGATCTGCATGACTTAACCCG 57.815 47.619 0.00 0.00 0.00 5.28
5179 5364 5.121105 CATACAGGTGATCTGCATGAAGAA 58.879 41.667 7.69 0.00 45.67 2.52
5185 5370 2.223409 TGATCTGCATGAAGAATTGCGC 60.223 45.455 7.69 0.00 41.80 6.09
5221 5406 5.459536 TCCCAGATAACGAATCAGATCTG 57.540 43.478 17.07 17.07 43.22 2.90
5360 5545 1.928868 CCCTTGCCTGTTGGAAGAAT 58.071 50.000 0.00 0.00 34.57 2.40
5565 5750 5.105635 ACGATTACCTCCGACATAGTTTTCA 60.106 40.000 0.00 0.00 0.00 2.69
5674 5859 6.127054 TGGAGATATGGGAGTTTGTGTTAGAG 60.127 42.308 0.00 0.00 0.00 2.43
5758 5943 1.271871 TGGTGCTTTGTGAGGGGTATG 60.272 52.381 0.00 0.00 0.00 2.39
5876 6061 6.771188 AAAGTAATGAGAGTGTGAACTTCG 57.229 37.500 0.00 0.00 0.00 3.79
5880 6065 1.001706 TGAGAGTGTGAACTTCGACGG 60.002 52.381 0.00 0.00 0.00 4.79
6003 6188 6.017192 TGTCTAGACTAGATGAAGTTTGGGT 58.983 40.000 23.01 0.00 37.13 4.51
6005 6190 7.672660 TGTCTAGACTAGATGAAGTTTGGGTAA 59.327 37.037 23.01 0.00 37.13 2.85
6052 6238 2.485426 GCTAAAATGCACAGCAGTCTGA 59.515 45.455 3.32 0.00 43.65 3.27
6231 6420 6.985188 TGCTACTACATGGTCTTCATTTTC 57.015 37.500 0.00 0.00 32.92 2.29
6241 6430 7.339212 ACATGGTCTTCATTTTCCGAAATATCA 59.661 33.333 0.00 0.00 33.78 2.15
6246 6435 8.879759 GTCTTCATTTTCCGAAATATCAGTGTA 58.120 33.333 0.00 0.00 33.78 2.90
6292 6482 5.047377 TCCTTGTTTCCTTGGATAAACATGC 60.047 40.000 7.49 0.00 43.14 4.06
6295 6485 2.418368 TCCTTGGATAAACATGCGCT 57.582 45.000 9.73 0.00 0.00 5.92
6315 6505 4.868171 CGCTCTACCTGTATTTGCTGTTAA 59.132 41.667 0.00 0.00 0.00 2.01
6317 6507 6.700081 CGCTCTACCTGTATTTGCTGTTAATA 59.300 38.462 0.00 0.00 0.00 0.98
6343 6533 6.767524 AGTAGATGTCAACTACTTCCTCTG 57.232 41.667 15.14 0.00 45.24 3.35
6344 6534 6.249951 AGTAGATGTCAACTACTTCCTCTGT 58.750 40.000 15.14 0.00 45.24 3.41
6345 6535 5.652994 AGATGTCAACTACTTCCTCTGTC 57.347 43.478 0.00 0.00 33.70 3.51
6346 6536 5.329399 AGATGTCAACTACTTCCTCTGTCT 58.671 41.667 0.00 0.00 33.70 3.41
6348 6538 4.470602 TGTCAACTACTTCCTCTGTCTCA 58.529 43.478 0.00 0.00 0.00 3.27
6349 6539 4.893524 TGTCAACTACTTCCTCTGTCTCAA 59.106 41.667 0.00 0.00 0.00 3.02
6350 6540 5.362717 TGTCAACTACTTCCTCTGTCTCAAA 59.637 40.000 0.00 0.00 0.00 2.69
6351 6541 6.127168 TGTCAACTACTTCCTCTGTCTCAAAA 60.127 38.462 0.00 0.00 0.00 2.44
6352 6542 6.931840 GTCAACTACTTCCTCTGTCTCAAAAT 59.068 38.462 0.00 0.00 0.00 1.82
6353 6543 8.088981 GTCAACTACTTCCTCTGTCTCAAAATA 58.911 37.037 0.00 0.00 0.00 1.40
6354 6544 8.816894 TCAACTACTTCCTCTGTCTCAAAATAT 58.183 33.333 0.00 0.00 0.00 1.28
6362 6552 7.481642 TCCTCTGTCTCAAAATATAAGACGTC 58.518 38.462 7.70 7.70 41.84 4.34
6394 6591 3.240069 GAAGTGCAGTGCATTTGATCAC 58.760 45.455 28.08 11.25 41.91 3.06
6399 6596 2.029649 GCAGTGCATTTGATCACCAACT 60.030 45.455 11.09 0.00 33.85 3.16
6402 6599 4.682860 CAGTGCATTTGATCACCAACTTTC 59.317 41.667 0.00 0.00 33.85 2.62
6403 6600 4.341806 AGTGCATTTGATCACCAACTTTCA 59.658 37.500 0.00 0.00 33.85 2.69
6404 6601 5.049167 GTGCATTTGATCACCAACTTTCAA 58.951 37.500 0.00 0.00 33.85 2.69
6406 6603 6.203338 GTGCATTTGATCACCAACTTTCAAAT 59.797 34.615 0.00 4.39 45.09 2.32
6413 6610 8.815141 TGATCACCAACTTTCAAATGTTATTG 57.185 30.769 0.00 0.00 0.00 1.90
6431 6628 7.644490 TGTTATTGTCGCAGTAAATTCAACTT 58.356 30.769 0.00 0.00 0.00 2.66
6432 6629 8.132362 TGTTATTGTCGCAGTAAATTCAACTTT 58.868 29.630 0.00 0.00 0.00 2.66
6433 6630 8.627428 GTTATTGTCGCAGTAAATTCAACTTTC 58.373 33.333 0.00 0.00 0.00 2.62
6434 6631 6.371809 TTGTCGCAGTAAATTCAACTTTCT 57.628 33.333 0.00 0.00 0.00 2.52
6437 6634 6.926826 TGTCGCAGTAAATTCAACTTTCTCTA 59.073 34.615 0.00 0.00 0.00 2.43
6441 6638 7.024171 GCAGTAAATTCAACTTTCTCTAAGGC 58.976 38.462 0.00 0.00 38.23 4.35
6449 6659 9.825109 ATTCAACTTTCTCTAAGGCTTATAGAC 57.175 33.333 18.68 0.00 38.23 2.59
6461 6671 4.588951 AGGCTTATAGACGGTCATGAATGA 59.411 41.667 11.27 0.00 0.00 2.57
6462 6672 5.070446 AGGCTTATAGACGGTCATGAATGAA 59.930 40.000 11.27 0.00 38.75 2.57
6463 6673 5.934625 GGCTTATAGACGGTCATGAATGAAT 59.065 40.000 11.27 0.00 38.75 2.57
6464 6674 6.128445 GGCTTATAGACGGTCATGAATGAATG 60.128 42.308 11.27 0.00 38.75 2.67
6468 6678 4.774124 AGACGGTCATGAATGAATGTGAT 58.226 39.130 11.27 0.00 38.75 3.06
6471 6681 6.994496 AGACGGTCATGAATGAATGTGATTAT 59.006 34.615 11.27 0.00 38.75 1.28
6474 6684 9.119418 ACGGTCATGAATGAATGTGATTATTTA 57.881 29.630 0.00 0.00 38.75 1.40
6497 6707 6.590234 ATTTCTTGTTAAGTTGGATGTCCC 57.410 37.500 0.00 0.00 34.29 4.46
6498 6708 4.715534 TCTTGTTAAGTTGGATGTCCCA 57.284 40.909 0.00 0.00 44.93 4.37
6508 6718 2.467880 TGGATGTCCCAGTCCTAACTC 58.532 52.381 0.00 0.00 40.82 3.01
6509 6719 2.044492 TGGATGTCCCAGTCCTAACTCT 59.956 50.000 0.00 0.00 40.82 3.24
6550 6761 2.370189 GACATTCCTAGCTACCAGGCAT 59.630 50.000 0.00 0.00 32.82 4.40
6552 6763 1.040646 TTCCTAGCTACCAGGCATCG 58.959 55.000 0.00 0.00 32.82 3.84
6566 6784 1.448985 GCATCGCACTTGGTCCTTAA 58.551 50.000 0.00 0.00 0.00 1.85
6570 6788 3.202829 TCGCACTTGGTCCTTAACTTT 57.797 42.857 0.00 0.00 0.00 2.66
6597 6817 0.984230 TCGATGAGCAAGAAAGGGGT 59.016 50.000 0.00 0.00 0.00 4.95
6601 6821 3.756434 CGATGAGCAAGAAAGGGGTAAAA 59.244 43.478 0.00 0.00 0.00 1.52
6604 6824 3.634910 TGAGCAAGAAAGGGGTAAAACAC 59.365 43.478 0.00 0.00 0.00 3.32
6615 6835 3.193903 GGGGTAAAACACACACACTGTTT 59.806 43.478 0.00 0.00 42.41 2.83
6617 6837 4.623595 GGGTAAAACACACACACTGTTTTG 59.376 41.667 16.00 0.00 46.44 2.44
6618 6838 5.224135 GGTAAAACACACACACTGTTTTGT 58.776 37.500 16.00 0.00 46.44 2.83
6619 6839 5.692654 GGTAAAACACACACACTGTTTTGTT 59.307 36.000 16.00 3.07 46.44 2.83
6626 6846 2.491693 ACACACTGTTTTGTTGGTCAGG 59.508 45.455 0.00 0.00 32.92 3.86
6706 6934 4.937620 TGGTCAGACAAACTCTGCATATTC 59.062 41.667 2.17 0.00 45.64 1.75
6864 7095 9.431887 TCGAAAGTAAGTACATTTTGCTCTTAT 57.568 29.630 0.00 0.00 0.00 1.73
6865 7096 9.478019 CGAAAGTAAGTACATTTTGCTCTTATG 57.522 33.333 0.00 0.00 0.00 1.90
6885 7116 1.055476 GTAAGAGCGTTCGTTCGTTCG 59.945 52.381 3.16 7.17 43.61 3.95
6980 7211 2.793010 GAACCTCGTCCGTCCACGAC 62.793 65.000 0.00 0.00 43.79 4.34
7054 7285 2.086869 CTGCCCAACATCCTACACAAG 58.913 52.381 0.00 0.00 0.00 3.16
7058 7289 3.763897 GCCCAACATCCTACACAAGAAAT 59.236 43.478 0.00 0.00 0.00 2.17
7060 7291 5.417580 GCCCAACATCCTACACAAGAAATAA 59.582 40.000 0.00 0.00 0.00 1.40
7071 7302 7.770433 CCTACACAAGAAATAACATCCATCTCA 59.230 37.037 0.00 0.00 0.00 3.27
7075 7306 5.053978 AGAAATAACATCCATCTCACCCC 57.946 43.478 0.00 0.00 0.00 4.95
7092 7323 2.827921 ACCCCATCAGAAAACAGCATTC 59.172 45.455 0.00 0.00 0.00 2.67
7098 7329 5.105473 CCATCAGAAAACAGCATTCCATCTT 60.105 40.000 0.00 0.00 0.00 2.40
7142 7399 7.696872 GTGATGAACTGATGATCATTCAAGTTG 59.303 37.037 25.11 0.00 34.54 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.095853 ACGCTATTCCGAACATGCTTTG 59.904 45.455 0.00 0.00 0.00 2.77
27 28 6.861065 TTCTTGTAGGTTTCAACATCTCAC 57.139 37.500 0.00 0.00 0.00 3.51
57 58 7.472543 ACGGTTTCTATTATGAATTCTTGTGC 58.527 34.615 7.05 0.00 0.00 4.57
110 111 3.435327 TGCACCTGACGATGTATCAAAAC 59.565 43.478 0.00 0.00 0.00 2.43
123 124 7.928307 ATGATAATTATACCATGCACCTGAC 57.072 36.000 0.00 0.00 0.00 3.51
186 192 7.744059 TGTGATCATTTTGCATGCAATTTTAG 58.256 30.769 32.27 19.78 35.70 1.85
187 193 7.148390 CCTGTGATCATTTTGCATGCAATTTTA 60.148 33.333 32.27 15.95 35.70 1.52
227 234 8.705048 TTGTTTGGTTTTGTAGGATTGTAAAC 57.295 30.769 0.00 0.00 0.00 2.01
241 251 7.334858 TCTTTAAGGAATGCTTGTTTGGTTTT 58.665 30.769 0.00 0.00 0.00 2.43
253 263 6.469782 TCCATGGAATTCTTTAAGGAATGC 57.530 37.500 13.46 11.15 36.24 3.56
265 275 6.097270 TGGTTTGATGAGATTCCATGGAATTC 59.903 38.462 34.93 29.88 43.98 2.17
271 281 6.028146 TGTTTGGTTTGATGAGATTCCATG 57.972 37.500 0.00 0.00 0.00 3.66
301 311 4.039339 TGTATCGGGGTTTAGGGTTGTAT 58.961 43.478 0.00 0.00 0.00 2.29
316 326 1.138859 TGGTGAGGCAAGATGTATCGG 59.861 52.381 0.00 0.00 0.00 4.18
317 327 2.602257 TGGTGAGGCAAGATGTATCG 57.398 50.000 0.00 0.00 0.00 2.92
322 332 6.057533 TGACTTTATATGGTGAGGCAAGATG 58.942 40.000 0.00 0.00 0.00 2.90
326 337 6.000246 TGATGACTTTATATGGTGAGGCAA 58.000 37.500 0.00 0.00 29.63 4.52
327 338 5.628797 TGATGACTTTATATGGTGAGGCA 57.371 39.130 0.00 0.00 0.00 4.75
342 353 8.025445 GCATGTTCAAATCTTAAGTTGATGACT 58.975 33.333 8.79 0.00 39.07 3.41
353 364 4.484236 CGCTTTGGCATGTTCAAATCTTA 58.516 39.130 13.81 0.00 38.60 2.10
373 384 1.772836 TAGAAAGGAGGGAGTACCGC 58.227 55.000 0.00 0.00 46.96 5.68
379 390 7.338710 TGTTTTACATCATAGAAAGGAGGGAG 58.661 38.462 0.00 0.00 0.00 4.30
380 391 7.265599 TGTTTTACATCATAGAAAGGAGGGA 57.734 36.000 0.00 0.00 0.00 4.20
381 392 8.525290 AATGTTTTACATCATAGAAAGGAGGG 57.475 34.615 0.00 0.00 37.97 4.30
406 417 2.492012 GCATTGATGTGGTGCCAAAAA 58.508 42.857 0.00 0.00 32.88 1.94
407 418 2.166821 GCATTGATGTGGTGCCAAAA 57.833 45.000 0.00 0.00 32.88 2.44
408 419 3.910817 GCATTGATGTGGTGCCAAA 57.089 47.368 0.00 0.00 32.88 3.28
412 423 2.166821 TTTTGGCATTGATGTGGTGC 57.833 45.000 0.00 0.00 38.12 5.01
429 440 7.107542 TCTGCCCTATAATGTAAGACGTTTTT 58.892 34.615 0.00 0.00 0.00 1.94
430 441 6.646267 TCTGCCCTATAATGTAAGACGTTTT 58.354 36.000 0.00 0.00 0.00 2.43
431 442 6.229936 TCTGCCCTATAATGTAAGACGTTT 57.770 37.500 0.00 0.00 0.00 3.60
432 443 5.864418 TCTGCCCTATAATGTAAGACGTT 57.136 39.130 0.00 0.00 0.00 3.99
433 444 5.279506 CCATCTGCCCTATAATGTAAGACGT 60.280 44.000 0.00 0.00 0.00 4.34
434 445 5.171476 CCATCTGCCCTATAATGTAAGACG 58.829 45.833 0.00 0.00 0.00 4.18
435 446 5.491982 CCCATCTGCCCTATAATGTAAGAC 58.508 45.833 0.00 0.00 0.00 3.01
436 447 4.536090 CCCCATCTGCCCTATAATGTAAGA 59.464 45.833 0.00 0.00 0.00 2.10
437 448 4.289672 ACCCCATCTGCCCTATAATGTAAG 59.710 45.833 0.00 0.00 0.00 2.34
438 449 4.042809 CACCCCATCTGCCCTATAATGTAA 59.957 45.833 0.00 0.00 0.00 2.41
439 450 3.587061 CACCCCATCTGCCCTATAATGTA 59.413 47.826 0.00 0.00 0.00 2.29
440 451 2.376518 CACCCCATCTGCCCTATAATGT 59.623 50.000 0.00 0.00 0.00 2.71
441 452 2.376518 ACACCCCATCTGCCCTATAATG 59.623 50.000 0.00 0.00 0.00 1.90
442 453 2.718456 ACACCCCATCTGCCCTATAAT 58.282 47.619 0.00 0.00 0.00 1.28
443 454 2.206322 ACACCCCATCTGCCCTATAA 57.794 50.000 0.00 0.00 0.00 0.98
444 455 2.206322 AACACCCCATCTGCCCTATA 57.794 50.000 0.00 0.00 0.00 1.31
445 456 2.206322 TAACACCCCATCTGCCCTAT 57.794 50.000 0.00 0.00 0.00 2.57
446 457 2.206322 ATAACACCCCATCTGCCCTA 57.794 50.000 0.00 0.00 0.00 3.53
447 458 1.215423 GAATAACACCCCATCTGCCCT 59.785 52.381 0.00 0.00 0.00 5.19
448 459 1.064017 TGAATAACACCCCATCTGCCC 60.064 52.381 0.00 0.00 0.00 5.36
449 460 2.435372 TGAATAACACCCCATCTGCC 57.565 50.000 0.00 0.00 0.00 4.85
450 461 4.799564 TTTTGAATAACACCCCATCTGC 57.200 40.909 0.00 0.00 0.00 4.26
451 462 6.528537 TCATTTTGAATAACACCCCATCTG 57.471 37.500 0.00 0.00 0.00 2.90
452 463 7.738437 ATTCATTTTGAATAACACCCCATCT 57.262 32.000 0.99 0.00 44.57 2.90
453 464 8.791327 AAATTCATTTTGAATAACACCCCATC 57.209 30.769 3.34 0.00 45.57 3.51
489 500 2.237392 ACAGGAATTGCCTCCAGAGTAC 59.763 50.000 0.00 0.00 46.97 2.73
555 566 3.503363 TGTGCTTCACTTTAGCCATCTTG 59.497 43.478 0.00 0.00 37.85 3.02
591 602 5.306532 ACTAGCAATCAATCAAACTGCTG 57.693 39.130 5.17 0.00 43.02 4.41
612 623 1.001745 CTTTGTTTTGCCGGCGCTAC 61.002 55.000 23.90 18.84 35.36 3.58
643 654 3.206150 CTCACCAGCAGTTGTGTAGTTT 58.794 45.455 0.00 0.00 34.14 2.66
646 657 1.344438 TCCTCACCAGCAGTTGTGTAG 59.656 52.381 0.00 0.00 34.14 2.74
648 659 0.767375 ATCCTCACCAGCAGTTGTGT 59.233 50.000 0.00 0.00 34.14 3.72
657 695 0.254178 CCCACTCCAATCCTCACCAG 59.746 60.000 0.00 0.00 0.00 4.00
660 698 1.077429 GCCCCACTCCAATCCTCAC 60.077 63.158 0.00 0.00 0.00 3.51
799 838 2.915137 CCAACCCAACCCAACCCG 60.915 66.667 0.00 0.00 0.00 5.28
850 889 7.627513 CGATTTTCGACCTGGAAATTAATCCAA 60.628 37.037 0.00 0.00 45.02 3.53
851 890 6.183360 CGATTTTCGACCTGGAAATTAATCCA 60.183 38.462 0.00 0.00 44.19 3.41
852 891 6.199393 CGATTTTCGACCTGGAAATTAATCC 58.801 40.000 0.00 0.00 43.74 3.01
854 893 5.449999 GGCGATTTTCGACCTGGAAATTAAT 60.450 40.000 0.00 0.00 43.36 1.40
855 894 4.142556 GGCGATTTTCGACCTGGAAATTAA 60.143 41.667 0.00 0.00 43.36 1.40
856 895 3.375922 GGCGATTTTCGACCTGGAAATTA 59.624 43.478 0.00 0.00 43.36 1.40
894 954 0.040204 AAAGAGGGGATTGTGCAGGG 59.960 55.000 0.00 0.00 0.00 4.45
942 1002 9.097946 TGAGTAGCACTAGTATATGAGGTACTA 57.902 37.037 16.13 6.72 41.55 1.82
944 1004 8.618702 TTGAGTAGCACTAGTATATGAGGTAC 57.381 38.462 0.00 2.51 0.00 3.34
945 1005 9.809395 ATTTGAGTAGCACTAGTATATGAGGTA 57.191 33.333 0.00 0.00 0.00 3.08
946 1006 8.713708 ATTTGAGTAGCACTAGTATATGAGGT 57.286 34.615 0.00 0.00 0.00 3.85
990 1056 1.333619 CTGGTAGCTCGCTTCTCTCTC 59.666 57.143 0.00 0.00 0.00 3.20
996 1062 1.678627 TCTGATCTGGTAGCTCGCTTC 59.321 52.381 0.00 0.00 0.00 3.86
1000 1066 0.040514 CGCTCTGATCTGGTAGCTCG 60.041 60.000 10.30 0.00 32.73 5.03
1070 1140 2.048603 GCGCCAGCATTTTCTCCCT 61.049 57.895 0.00 0.00 44.35 4.20
1253 1338 1.604378 CAAGCTACCCCTGGTGAGG 59.396 63.158 0.00 0.00 36.19 3.86
1254 1339 1.604378 CCAAGCTACCCCTGGTGAG 59.396 63.158 0.00 0.00 36.19 3.51
1256 1341 1.789576 AACCCAAGCTACCCCTGGTG 61.790 60.000 0.84 0.00 36.19 4.17
1257 1342 1.465387 AACCCAAGCTACCCCTGGT 60.465 57.895 0.84 0.00 40.16 4.00
1337 1426 0.107848 GGAAGAAAGGAATCGGCGGA 60.108 55.000 7.21 0.00 0.00 5.54
1338 1427 1.095807 GGGAAGAAAGGAATCGGCGG 61.096 60.000 7.21 0.00 0.00 6.13
1468 1568 0.033991 TTCTCTCCAGTCTCCTCCCG 60.034 60.000 0.00 0.00 0.00 5.14
1533 1633 0.970937 ATCACAGATCACGACCGGGT 60.971 55.000 6.32 0.00 0.00 5.28
1590 1706 4.424711 CACCCACCCACCCATCCG 62.425 72.222 0.00 0.00 0.00 4.18
1591 1707 3.264845 ACACCCACCCACCCATCC 61.265 66.667 0.00 0.00 0.00 3.51
1592 1708 2.035626 CACACCCACCCACCCATC 59.964 66.667 0.00 0.00 0.00 3.51
1593 1709 2.366153 GAACACACCCACCCACCCAT 62.366 60.000 0.00 0.00 0.00 4.00
1594 1710 3.024356 AACACACCCACCCACCCA 61.024 61.111 0.00 0.00 0.00 4.51
1595 1711 2.203437 GAACACACCCACCCACCC 60.203 66.667 0.00 0.00 0.00 4.61
1596 1712 2.593436 CGAACACACCCACCCACC 60.593 66.667 0.00 0.00 0.00 4.61
1597 1713 1.452470 AACGAACACACCCACCCAC 60.452 57.895 0.00 0.00 0.00 4.61
1631 1747 1.616159 ATCCCCACCAACAGAAAACG 58.384 50.000 0.00 0.00 0.00 3.60
1740 1859 6.848069 AGAGTATACTATCTGACAAGCTCCT 58.152 40.000 5.09 0.00 0.00 3.69
1741 1860 7.013846 ACAAGAGTATACTATCTGACAAGCTCC 59.986 40.741 5.09 0.00 0.00 4.70
1756 1875 3.308323 GCAGCTGCTCAACAAGAGTATAC 59.692 47.826 31.33 0.00 46.47 1.47
1757 1876 3.525537 GCAGCTGCTCAACAAGAGTATA 58.474 45.455 31.33 0.00 46.47 1.47
1758 1877 2.354259 GCAGCTGCTCAACAAGAGTAT 58.646 47.619 31.33 0.00 46.47 2.12
1760 1879 2.626582 GCAGCTGCTCAACAAGAGT 58.373 52.632 31.33 0.00 46.47 3.24
1778 1897 9.512435 CTTTGATGAACAAATCCAGCTAATTAG 57.488 33.333 8.20 8.20 45.63 1.73
1816 1935 2.554032 CGAAGCAAATGGAAGTTCCTGT 59.446 45.455 22.41 8.84 37.46 4.00
1820 1939 5.997385 TCTTAACGAAGCAAATGGAAGTTC 58.003 37.500 0.00 0.00 32.21 3.01
1849 1968 9.516314 CAATAATCGATCAAACTAGTACAGTGA 57.484 33.333 0.00 0.00 37.63 3.41
1850 1969 8.755941 CCAATAATCGATCAAACTAGTACAGTG 58.244 37.037 0.00 0.00 37.63 3.66
1851 1970 7.926555 CCCAATAATCGATCAAACTAGTACAGT 59.073 37.037 0.00 0.00 40.05 3.55
1852 1971 7.926555 ACCCAATAATCGATCAAACTAGTACAG 59.073 37.037 0.00 0.00 0.00 2.74
1867 1986 7.201591 GCAGATATCTGATGAACCCAATAATCG 60.202 40.741 32.38 3.59 46.59 3.34
1979 2099 2.488153 ACAAGTTAGCAGCCGGATTTTC 59.512 45.455 5.05 0.00 0.00 2.29
2010 2130 0.670546 CTTGGGTCACTGCACGTAGG 60.671 60.000 0.00 0.00 0.00 3.18
2011 2131 0.317160 TCTTGGGTCACTGCACGTAG 59.683 55.000 0.00 0.00 0.00 3.51
2012 2132 0.317160 CTCTTGGGTCACTGCACGTA 59.683 55.000 0.00 0.00 0.00 3.57
2013 2133 1.069765 CTCTTGGGTCACTGCACGT 59.930 57.895 0.00 0.00 0.00 4.49
2082 2203 0.602562 TGCTTCGCTTCCCCATTTTG 59.397 50.000 0.00 0.00 0.00 2.44
2083 2204 1.000843 GTTGCTTCGCTTCCCCATTTT 59.999 47.619 0.00 0.00 0.00 1.82
2121 2242 1.112113 AGCCGACATTGGTATCGTCT 58.888 50.000 0.00 0.00 36.60 4.18
2127 2248 1.447140 GACGCAGCCGACATTGGTA 60.447 57.895 0.00 0.00 38.29 3.25
2191 2312 1.741401 CCTGCTTCGCGTCCATCAA 60.741 57.895 5.77 0.00 0.00 2.57
2211 2332 1.300233 GAGCTTATGTCTCCCGCCG 60.300 63.158 0.00 0.00 0.00 6.46
2220 2341 1.689273 GTGATCTCCCGGAGCTTATGT 59.311 52.381 9.87 0.00 0.00 2.29
2382 2503 7.142021 TGATTTTCTTATAACACTGCGCAAAA 58.858 30.769 13.05 4.62 0.00 2.44
2422 2543 4.527509 AGATGATCAACGAACTGACAGT 57.472 40.909 1.07 1.07 0.00 3.55
2425 2546 3.681897 AGCAAGATGATCAACGAACTGAC 59.318 43.478 0.00 0.00 0.00 3.51
2429 2550 2.029728 CCGAGCAAGATGATCAACGAAC 59.970 50.000 0.00 0.00 31.10 3.95
2442 2563 0.947244 AGTGAAAGCAACCGAGCAAG 59.053 50.000 0.00 0.00 36.85 4.01
2475 2596 9.443323 TGCACTTCTAAACTGTAAGCATAATTA 57.557 29.630 0.00 0.00 37.60 1.40
2506 2627 1.901591 ACAAACTCATCCAGCCACAG 58.098 50.000 0.00 0.00 0.00 3.66
2529 2650 5.261216 CCTAAAAGTAGGGCAAGGAATGAA 58.739 41.667 0.00 0.00 43.07 2.57
2618 2739 6.458206 GCACATTCAATTGCCGAACTATCTTA 60.458 38.462 0.00 0.00 32.21 2.10
2629 2750 0.388907 ACGCTGCACATTCAATTGCC 60.389 50.000 0.00 0.00 38.00 4.52
2634 2755 1.246649 AATCCACGCTGCACATTCAA 58.753 45.000 0.00 0.00 0.00 2.69
2635 2756 1.246649 AAATCCACGCTGCACATTCA 58.753 45.000 0.00 0.00 0.00 2.57
2645 2766 3.251004 ACAAGTCAAGAGAAAATCCACGC 59.749 43.478 0.00 0.00 0.00 5.34
2647 2768 6.803807 GCATAACAAGTCAAGAGAAAATCCAC 59.196 38.462 0.00 0.00 0.00 4.02
2736 2858 2.573463 TCCTCAAAATCCCTAGGCCTT 58.427 47.619 12.58 0.00 0.00 4.35
2782 2904 6.966021 TGAGACCTTAATTTTCTTGGTTTCG 58.034 36.000 0.00 0.00 35.49 3.46
2783 2905 7.230712 TCCTGAGACCTTAATTTTCTTGGTTTC 59.769 37.037 0.00 0.00 33.98 2.78
2788 2910 8.848474 TTACTCCTGAGACCTTAATTTTCTTG 57.152 34.615 0.22 0.00 0.00 3.02
2804 2926 3.973206 TGAAAGCGGATTTACTCCTGA 57.027 42.857 0.00 0.00 42.47 3.86
2816 2938 6.430451 GGTAGTCAATGAAATATGAAAGCGG 58.570 40.000 0.00 0.00 0.00 5.52
2818 2940 6.907212 CACGGTAGTCAATGAAATATGAAAGC 59.093 38.462 0.00 0.00 0.00 3.51
2827 2949 4.061357 TCACACACGGTAGTCAATGAAA 57.939 40.909 0.00 0.00 0.00 2.69
2840 2962 7.636259 AAAATAATGGTTTCATTCACACACG 57.364 32.000 0.00 0.00 42.16 4.49
2875 3028 7.805163 TGTTTCTGTATGGATCCATGATACTT 58.195 34.615 33.41 12.02 37.82 2.24
2999 3153 1.173043 GATTCACACGCCCCAATTCA 58.827 50.000 0.00 0.00 0.00 2.57
3215 3369 2.005451 CTTGCCAAGACAGATTCGAGG 58.995 52.381 0.00 0.00 0.00 4.63
3315 3469 5.994668 GCTTCTTATGGATTAGGGACTTCAG 59.005 44.000 0.00 0.00 41.75 3.02
3380 3534 1.072965 CCCTTGCTCTCTTGAGGTTGT 59.927 52.381 0.00 0.00 40.53 3.32
3616 3770 1.494721 AGCCCCTTGTCTCTTCAACAA 59.505 47.619 0.00 0.00 35.44 2.83
3617 3771 1.072331 GAGCCCCTTGTCTCTTCAACA 59.928 52.381 0.00 0.00 0.00 3.33
3618 3772 1.072331 TGAGCCCCTTGTCTCTTCAAC 59.928 52.381 0.00 0.00 0.00 3.18
3632 3786 3.128242 CAGACAAGTCATGATTTGAGCCC 59.872 47.826 30.79 18.16 34.17 5.19
3724 3878 0.449388 GTTGATTCCTTCTGGCAGCG 59.551 55.000 10.34 2.99 0.00 5.18
3740 3894 2.544685 CTAACAGGCTGAGATCCGTTG 58.455 52.381 23.66 0.00 0.00 4.10
3743 3897 0.461548 TGCTAACAGGCTGAGATCCG 59.538 55.000 23.66 4.22 0.00 4.18
3778 3932 1.253100 TCCTTTTCGTGGATTTGGCC 58.747 50.000 0.00 0.00 0.00 5.36
3789 3943 3.684788 ACCGTCTGATCAATTCCTTTTCG 59.315 43.478 0.00 0.00 0.00 3.46
3809 3963 1.242076 ATCTTGCACTGCTTGTCACC 58.758 50.000 1.98 0.00 0.00 4.02
3840 3994 4.771054 TGGAGTTTGAGAGGTACTAGGTTC 59.229 45.833 0.00 0.00 41.55 3.62
3908 4062 5.129485 GGTCACAATTCTGAATCTCCTCCTA 59.871 44.000 2.92 0.00 0.00 2.94
3932 4086 4.244425 TCTTTCTCTTCTTGTCTCACCG 57.756 45.455 0.00 0.00 0.00 4.94
3971 4125 2.693591 ACGTGAGACTCTTTGAAGGTCA 59.306 45.455 3.68 0.00 32.27 4.02
4013 4167 2.026262 GTGATGCCCTGAACCCTTCTTA 60.026 50.000 0.00 0.00 0.00 2.10
4020 4174 2.690778 GCGTGTGATGCCCTGAACC 61.691 63.158 0.00 0.00 0.00 3.62
4025 4179 2.360350 CCTTGCGTGTGATGCCCT 60.360 61.111 0.00 0.00 0.00 5.19
4029 4183 0.957395 AAGCTCCCTTGCGTGTGATG 60.957 55.000 0.00 0.00 38.13 3.07
4037 4191 2.034687 TCTGCCAAGCTCCCTTGC 59.965 61.111 0.00 0.00 45.65 4.01
4069 4223 3.430895 TCTGGCGATGTCGTTCTTAAAAC 59.569 43.478 4.20 0.00 42.22 2.43
4148 4302 3.984508 TCTTGTGGAGCTACTATACGC 57.015 47.619 0.00 0.00 0.00 4.42
4171 4325 5.862678 AGCCTCCTTGTAGAAGATAGAAC 57.137 43.478 0.19 0.00 0.00 3.01
4226 4380 2.040947 TGGATGGTTGCCAGACACATTA 59.959 45.455 0.00 0.00 36.75 1.90
4230 4384 0.598065 GTTGGATGGTTGCCAGACAC 59.402 55.000 0.00 0.00 36.75 3.67
4231 4385 0.184692 TGTTGGATGGTTGCCAGACA 59.815 50.000 0.00 0.00 36.75 3.41
4235 4389 1.907807 GGCTGTTGGATGGTTGCCA 60.908 57.895 0.00 0.00 40.04 4.92
4242 4396 0.393537 GAGGACTGGGCTGTTGGATG 60.394 60.000 0.00 0.00 0.00 3.51
4285 4439 2.285773 ACATCGCAGTGAGGGAGCA 61.286 57.895 0.00 0.00 42.97 4.26
4318 4472 1.366679 GCGTTTTCCACTAGGGCTAC 58.633 55.000 0.00 0.00 36.21 3.58
4324 4478 0.949105 AGTGCGGCGTTTTCCACTAG 60.949 55.000 14.05 0.00 36.82 2.57
4335 4489 1.875813 GTGAGAGATCAGTGCGGCG 60.876 63.158 0.51 0.51 0.00 6.46
4339 4493 2.495270 TCTTCAGGTGAGAGATCAGTGC 59.505 50.000 0.00 0.00 0.00 4.40
4401 4555 2.381752 TGACTCCTCTCTTGTGTGGA 57.618 50.000 0.00 0.00 0.00 4.02
4415 4569 2.428890 AGAGTCGTCCCATGATTGACTC 59.571 50.000 20.34 20.34 46.09 3.36
4444 4598 3.067106 ACACTAGTACAATGTGCAGTGC 58.933 45.455 22.58 8.58 34.08 4.40
4458 4612 5.163468 CCTGATCATCAACTGCTACACTAGT 60.163 44.000 0.00 0.00 0.00 2.57
4489 4643 5.645067 TCTTTCATGCTACATTTGTCCTGAG 59.355 40.000 0.00 0.00 0.00 3.35
4534 4688 7.110810 CCCTGATGATTCATGCAACTATAGAT 58.889 38.462 6.78 0.00 0.00 1.98
4624 4780 4.973051 GTCTGCTACATCAGTAACATCTCG 59.027 45.833 0.00 0.00 35.63 4.04
4641 4797 4.562347 CCTTCAATAGATATGGCGTCTGCT 60.562 45.833 0.00 0.00 42.25 4.24
4643 4799 5.139435 TCCTTCAATAGATATGGCGTCTG 57.861 43.478 0.00 0.00 0.00 3.51
4648 4804 5.477984 TGCCAATTCCTTCAATAGATATGGC 59.522 40.000 0.00 0.00 36.80 4.40
4655 4811 8.689972 AGTCTATTTTGCCAATTCCTTCAATAG 58.310 33.333 0.00 0.00 0.00 1.73
4664 4820 6.913170 TCAGAACAGTCTATTTTGCCAATTC 58.087 36.000 0.00 0.00 30.85 2.17
4680 4836 3.063180 GGATGCAGACGATTTCAGAACAG 59.937 47.826 0.00 0.00 0.00 3.16
4691 4847 1.066858 GTTCTTCTGGGATGCAGACGA 60.067 52.381 0.00 0.00 0.00 4.20
4692 4848 1.066573 AGTTCTTCTGGGATGCAGACG 60.067 52.381 0.00 0.00 0.00 4.18
4693 4849 2.777832 AGTTCTTCTGGGATGCAGAC 57.222 50.000 0.00 0.00 0.00 3.51
4700 4856 3.713003 TCTCTGCATAGTTCTTCTGGGA 58.287 45.455 0.00 0.00 0.00 4.37
4702 4858 5.229423 GCTATCTCTGCATAGTTCTTCTGG 58.771 45.833 0.00 0.00 0.00 3.86
4706 4874 3.006323 CGGGCTATCTCTGCATAGTTCTT 59.994 47.826 0.00 0.00 0.00 2.52
4730 4898 2.124529 GCTGGGAGCTTACTGGCC 60.125 66.667 0.00 0.00 38.45 5.36
4749 4930 3.358775 TCGCAACGAAAACATGAAACAG 58.641 40.909 0.00 0.00 31.06 3.16
4753 4934 5.538067 TGATATCGCAACGAAAACATGAA 57.462 34.783 0.00 0.00 39.99 2.57
4763 4944 6.872608 TGTGTTAACATATGATATCGCAACG 58.127 36.000 12.26 0.00 0.00 4.10
4783 4964 7.886629 ATCCTATAAATGAAACATGCTGTGT 57.113 32.000 0.00 0.00 44.84 3.72
4784 4965 9.836076 CATATCCTATAAATGAAACATGCTGTG 57.164 33.333 0.00 0.00 0.00 3.66
4811 4994 2.540383 TCCTTGCTCTGCTTCCTCTAA 58.460 47.619 0.00 0.00 0.00 2.10
4867 5050 3.863400 GCTGCTCCAATTCAACAATGCTT 60.863 43.478 0.00 0.00 0.00 3.91
4921 5104 7.093333 GGGGAACAATCTGAGATAAATTTGGTT 60.093 37.037 0.00 0.00 0.00 3.67
4922 5105 6.381133 GGGGAACAATCTGAGATAAATTTGGT 59.619 38.462 0.00 0.00 0.00 3.67
4952 5135 5.735922 GCTGTTCTTGTTTGTCATGGCTTAA 60.736 40.000 0.00 0.00 0.00 1.85
4966 5149 1.729586 TAGGACTGGGCTGTTCTTGT 58.270 50.000 0.00 0.00 0.00 3.16
5054 5237 7.505248 TGCATCTATTTATGTAAATTGGGCTCA 59.495 33.333 16.40 0.00 37.16 4.26
5055 5238 7.885297 TGCATCTATTTATGTAAATTGGGCTC 58.115 34.615 16.40 0.00 37.16 4.70
5056 5239 7.838079 TGCATCTATTTATGTAAATTGGGCT 57.162 32.000 16.40 2.15 37.16 5.19
5057 5240 7.384932 GGTTGCATCTATTTATGTAAATTGGGC 59.615 37.037 3.57 9.21 37.16 5.36
5135 5320 3.562141 TGTCACAAACGGGTTAAGTCATG 59.438 43.478 0.00 0.00 0.00 3.07
5148 5333 4.142816 GCAGATCACCTGTATGTCACAAAC 60.143 45.833 0.00 0.00 44.71 2.93
5179 5364 3.781307 TACAGGGCTCCGCGCAAT 61.781 61.111 8.75 0.00 44.06 3.56
5185 5370 1.961180 CTGGGAAGTACAGGGCTCCG 61.961 65.000 0.00 0.00 32.38 4.63
5221 5406 2.951229 TGTCCTCCCAAAAGACCTTC 57.049 50.000 0.00 0.00 0.00 3.46
5360 5545 7.494625 GTCTATTTGATCACCTTGATTCGGTAA 59.505 37.037 0.00 0.00 37.20 2.85
5515 5700 4.754618 ACATATTTGTCAACTTCTGCGACA 59.245 37.500 0.00 0.00 37.87 4.35
5674 5859 3.460857 ACAGCCTCATCGATAAGTTCC 57.539 47.619 0.00 0.00 0.00 3.62
5758 5943 8.744568 AACCTCTACAGTTATACCTAGTGTAC 57.255 38.462 0.00 0.00 31.86 2.90
5880 6065 0.718220 CACTTCGACGAGCAAAACGC 60.718 55.000 0.00 0.00 42.91 4.84
6003 6188 0.692476 AGGCATGGCTGTGACAGTTA 59.308 50.000 22.69 3.94 33.43 2.24
6005 6190 1.002868 GAGGCATGGCTGTGACAGT 60.003 57.895 28.55 0.00 33.43 3.55
6052 6238 1.970640 AGGAAAATCCGCAAAGCCTTT 59.029 42.857 0.00 0.00 42.75 3.11
6120 6306 6.153067 TGTACACACAAACACAAAGAAAAGG 58.847 36.000 0.00 0.00 0.00 3.11
6121 6307 7.328249 ACATGTACACACAAACACAAAGAAAAG 59.672 33.333 0.00 0.00 38.42 2.27
6122 6308 7.115520 CACATGTACACACAAACACAAAGAAAA 59.884 33.333 0.00 0.00 38.42 2.29
6123 6309 6.584184 CACATGTACACACAAACACAAAGAAA 59.416 34.615 0.00 0.00 38.42 2.52
6124 6310 6.089476 CACATGTACACACAAACACAAAGAA 58.911 36.000 0.00 0.00 38.42 2.52
6125 6311 5.182190 ACACATGTACACACAAACACAAAGA 59.818 36.000 0.00 0.00 38.42 2.52
6126 6312 5.398169 ACACATGTACACACAAACACAAAG 58.602 37.500 0.00 0.00 38.42 2.77
6215 6404 5.982890 ATTTCGGAAAATGAAGACCATGT 57.017 34.783 7.33 0.00 33.78 3.21
6249 6438 9.543783 AACAAGGAGTTGTCTAACTTAACTTAG 57.456 33.333 0.00 0.00 46.68 2.18
6251 6440 8.803397 AAACAAGGAGTTGTCTAACTTAACTT 57.197 30.769 0.00 0.00 46.68 2.66
6261 6450 3.202151 TCCAAGGAAACAAGGAGTTGTCT 59.798 43.478 0.00 0.00 46.68 3.41
6265 6454 6.133356 TGTTTATCCAAGGAAACAAGGAGTT 58.867 36.000 4.34 0.00 41.37 3.01
6268 6457 5.047377 GCATGTTTATCCAAGGAAACAAGGA 60.047 40.000 9.66 0.00 45.78 3.36
6270 6459 4.858692 CGCATGTTTATCCAAGGAAACAAG 59.141 41.667 9.66 7.28 45.78 3.16
6292 6482 2.893637 ACAGCAAATACAGGTAGAGCG 58.106 47.619 0.00 0.00 0.00 5.03
6323 6513 5.329399 AGACAGAGGAAGTAGTTGACATCT 58.671 41.667 0.00 0.00 0.00 2.90
6336 6526 7.837863 ACGTCTTATATTTTGAGACAGAGGAA 58.162 34.615 0.00 0.00 39.74 3.36
6338 6528 6.415280 CGACGTCTTATATTTTGAGACAGAGG 59.585 42.308 14.70 0.00 39.74 3.69
6340 6530 6.745907 CACGACGTCTTATATTTTGAGACAGA 59.254 38.462 14.70 0.00 39.74 3.41
6341 6531 6.527023 ACACGACGTCTTATATTTTGAGACAG 59.473 38.462 14.70 0.00 39.74 3.51
6342 6532 6.307077 CACACGACGTCTTATATTTTGAGACA 59.693 38.462 14.70 0.00 39.74 3.41
6343 6533 6.307318 ACACACGACGTCTTATATTTTGAGAC 59.693 38.462 14.70 0.00 37.13 3.36
6344 6534 6.307077 CACACACGACGTCTTATATTTTGAGA 59.693 38.462 14.70 0.00 0.00 3.27
6345 6535 6.089016 ACACACACGACGTCTTATATTTTGAG 59.911 38.462 14.70 0.00 0.00 3.02
6346 6536 5.921976 ACACACACGACGTCTTATATTTTGA 59.078 36.000 14.70 0.00 0.00 2.69
6348 6538 7.756272 TCATACACACACGACGTCTTATATTTT 59.244 33.333 14.70 0.00 0.00 1.82
6349 6539 7.252708 TCATACACACACGACGTCTTATATTT 58.747 34.615 14.70 0.00 0.00 1.40
6350 6540 6.788243 TCATACACACACGACGTCTTATATT 58.212 36.000 14.70 0.00 0.00 1.28
6351 6541 6.367686 TCATACACACACGACGTCTTATAT 57.632 37.500 14.70 0.00 0.00 0.86
6352 6542 5.799681 TCATACACACACGACGTCTTATA 57.200 39.130 14.70 0.00 0.00 0.98
6353 6543 4.690184 TCATACACACACGACGTCTTAT 57.310 40.909 14.70 0.00 0.00 1.73
6354 6544 4.023792 ACTTCATACACACACGACGTCTTA 60.024 41.667 14.70 0.00 0.00 2.10
6355 6545 3.243301 ACTTCATACACACACGACGTCTT 60.243 43.478 14.70 0.03 0.00 3.01
6356 6546 2.292569 ACTTCATACACACACGACGTCT 59.707 45.455 14.70 0.00 0.00 4.18
6357 6547 2.404029 CACTTCATACACACACGACGTC 59.596 50.000 5.18 5.18 0.00 4.34
6358 6548 2.390938 CACTTCATACACACACGACGT 58.609 47.619 0.00 0.00 0.00 4.34
6359 6549 1.124297 GCACTTCATACACACACGACG 59.876 52.381 0.00 0.00 0.00 5.12
6362 6552 2.096762 CACTGCACTTCATACACACACG 60.097 50.000 0.00 0.00 0.00 4.49
6394 6591 5.689514 TGCGACAATAACATTTGAAAGTTGG 59.310 36.000 0.00 0.00 0.00 3.77
6399 6596 9.469807 AATTTACTGCGACAATAACATTTGAAA 57.530 25.926 0.00 0.00 0.00 2.69
6402 6599 8.446489 TGAATTTACTGCGACAATAACATTTG 57.554 30.769 0.00 0.00 0.00 2.32
6403 6600 8.911662 GTTGAATTTACTGCGACAATAACATTT 58.088 29.630 0.00 0.00 0.00 2.32
6404 6601 8.296713 AGTTGAATTTACTGCGACAATAACATT 58.703 29.630 0.00 0.00 0.00 2.71
6406 6603 7.197071 AGTTGAATTTACTGCGACAATAACA 57.803 32.000 0.00 0.00 0.00 2.41
6407 6604 8.502161 AAAGTTGAATTTACTGCGACAATAAC 57.498 30.769 0.00 0.00 0.00 1.89
6408 6605 8.564574 AGAAAGTTGAATTTACTGCGACAATAA 58.435 29.630 0.00 0.00 0.00 1.40
6409 6606 8.094798 AGAAAGTTGAATTTACTGCGACAATA 57.905 30.769 0.00 0.00 0.00 1.90
6410 6607 6.970484 AGAAAGTTGAATTTACTGCGACAAT 58.030 32.000 0.00 0.00 0.00 2.71
6413 6610 6.229561 AGAGAAAGTTGAATTTACTGCGAC 57.770 37.500 0.00 0.00 0.00 5.19
6431 6628 5.443283 TGACCGTCTATAAGCCTTAGAGAA 58.557 41.667 10.23 0.00 35.47 2.87
6432 6629 5.045012 TGACCGTCTATAAGCCTTAGAGA 57.955 43.478 4.73 4.73 31.52 3.10
6433 6630 5.473846 TCATGACCGTCTATAAGCCTTAGAG 59.526 44.000 0.00 0.00 0.00 2.43
6434 6631 5.382616 TCATGACCGTCTATAAGCCTTAGA 58.617 41.667 0.00 0.00 0.00 2.10
6437 6634 5.070446 TCATTCATGACCGTCTATAAGCCTT 59.930 40.000 0.00 0.00 0.00 4.35
6441 6638 7.653311 TCACATTCATTCATGACCGTCTATAAG 59.347 37.037 0.00 0.00 36.36 1.73
6444 6641 5.917462 TCACATTCATTCATGACCGTCTAT 58.083 37.500 0.00 0.00 36.36 1.98
6445 6642 5.337578 TCACATTCATTCATGACCGTCTA 57.662 39.130 0.00 0.00 36.36 2.59
6471 6681 8.581578 GGGACATCCAACTTAACAAGAAATAAA 58.418 33.333 0.00 0.00 37.91 1.40
6474 6684 6.074648 TGGGACATCCAACTTAACAAGAAAT 58.925 36.000 0.00 0.00 43.84 2.17
6478 6688 4.398319 ACTGGGACATCCAACTTAACAAG 58.602 43.478 0.00 0.00 46.51 3.16
6480 6690 3.244770 GGACTGGGACATCCAACTTAACA 60.245 47.826 0.00 0.00 46.51 2.41
6481 6691 3.009143 AGGACTGGGACATCCAACTTAAC 59.991 47.826 0.00 0.00 46.51 2.01
6483 6693 2.915869 AGGACTGGGACATCCAACTTA 58.084 47.619 0.00 0.00 46.51 2.24
6484 6694 1.747444 AGGACTGGGACATCCAACTT 58.253 50.000 0.00 0.00 46.51 2.66
6485 6695 2.572104 GTTAGGACTGGGACATCCAACT 59.428 50.000 0.00 0.00 46.51 3.16
6486 6696 2.572104 AGTTAGGACTGGGACATCCAAC 59.428 50.000 0.00 0.00 46.51 3.77
6487 6697 2.838202 GAGTTAGGACTGGGACATCCAA 59.162 50.000 0.00 0.00 46.51 3.53
6488 6698 2.044492 AGAGTTAGGACTGGGACATCCA 59.956 50.000 0.00 0.00 44.79 3.41
6489 6699 2.432510 CAGAGTTAGGACTGGGACATCC 59.567 54.545 0.00 0.00 38.20 3.51
6490 6700 3.366396 TCAGAGTTAGGACTGGGACATC 58.634 50.000 0.00 0.00 38.20 3.06
6491 6701 3.474798 TCAGAGTTAGGACTGGGACAT 57.525 47.619 0.00 0.00 38.20 3.06
6492 6702 2.992847 TCAGAGTTAGGACTGGGACA 57.007 50.000 0.00 0.00 35.88 4.02
6493 6703 8.741841 GTTATATATCAGAGTTAGGACTGGGAC 58.258 40.741 0.00 0.00 35.88 4.46
6495 6705 8.651589 TGTTATATATCAGAGTTAGGACTGGG 57.348 38.462 0.00 0.00 35.88 4.45
6533 6744 1.040646 CGATGCCTGGTAGCTAGGAA 58.959 55.000 5.13 0.00 37.52 3.36
6536 6747 0.598680 GTGCGATGCCTGGTAGCTAG 60.599 60.000 0.00 0.00 0.00 3.42
6540 6751 1.091771 CCAAGTGCGATGCCTGGTAG 61.092 60.000 0.00 0.00 0.00 3.18
6546 6757 0.392461 TAAGGACCAAGTGCGATGCC 60.392 55.000 0.00 0.00 0.00 4.40
6550 6761 2.922740 AAGTTAAGGACCAAGTGCGA 57.077 45.000 0.00 0.00 0.00 5.10
6552 6763 4.139038 TGGTAAAGTTAAGGACCAAGTGC 58.861 43.478 0.00 0.00 39.01 4.40
6566 6784 4.471904 TGCTCATCGATCTTGGTAAAGT 57.528 40.909 0.00 0.00 34.78 2.66
6570 6788 4.736126 TTCTTGCTCATCGATCTTGGTA 57.264 40.909 0.00 0.00 0.00 3.25
6601 6821 2.625790 ACCAACAAAACAGTGTGTGTGT 59.374 40.909 12.33 7.15 40.26 3.72
6604 6824 3.500982 CTGACCAACAAAACAGTGTGTG 58.499 45.455 0.00 0.59 0.00 3.82
6615 6835 2.499214 GGTTGTGCCTGACCAACAA 58.501 52.632 0.00 0.00 42.09 2.83
6616 6836 4.251246 GGTTGTGCCTGACCAACA 57.749 55.556 0.00 0.00 42.09 3.33
6626 6846 4.771590 TCATCTGATTTTCAGGTTGTGC 57.228 40.909 4.78 0.00 44.39 4.57
6672 6900 1.277842 TGTCTGACCAACAGTGTGTGT 59.722 47.619 5.17 0.00 45.86 3.72
6673 6901 2.022764 TGTCTGACCAACAGTGTGTG 57.977 50.000 5.17 0.00 45.86 3.82
6676 6904 3.055094 AGAGTTTGTCTGACCAACAGTGT 60.055 43.478 22.05 5.90 45.86 3.55
6724 6952 3.502211 CGTAGTCAAGGATTTGCAAGGTT 59.498 43.478 0.00 0.00 34.21 3.50
6783 7011 4.381079 GGCGTAGGTTAGGATGATGATCTC 60.381 50.000 0.00 0.00 0.00 2.75
6864 7095 2.046313 GAACGAACGAACGCTCTTACA 58.954 47.619 0.14 0.00 36.70 2.41
6865 7096 1.055476 CGAACGAACGAACGCTCTTAC 59.945 52.381 0.14 0.00 36.70 2.34
6873 7104 1.378155 CGAGAGAACGAACGAACGAAC 59.622 52.381 11.97 6.21 37.03 3.95
6877 7108 0.966407 CGTCGAGAGAACGAACGAAC 59.034 55.000 0.14 0.00 45.01 3.95
6980 7211 1.497278 CCTGGCGTTCAACATCGTG 59.503 57.895 0.00 0.00 0.00 4.35
7054 7285 4.792068 TGGGGTGAGATGGATGTTATTTC 58.208 43.478 0.00 0.00 0.00 2.17
7058 7289 3.392285 CTGATGGGGTGAGATGGATGTTA 59.608 47.826 0.00 0.00 0.00 2.41
7060 7291 1.773052 CTGATGGGGTGAGATGGATGT 59.227 52.381 0.00 0.00 0.00 3.06
7071 7302 2.610438 ATGCTGTTTTCTGATGGGGT 57.390 45.000 0.00 0.00 0.00 4.95
7075 7306 5.578005 AGATGGAATGCTGTTTTCTGATG 57.422 39.130 0.00 0.00 0.00 3.07
7092 7323 6.150641 ACACACTTGAATCTTGATGAAGATGG 59.849 38.462 8.26 2.81 46.45 3.51
7098 7329 6.232692 TCATCACACACTTGAATCTTGATGA 58.767 36.000 7.17 7.17 43.37 2.92
7107 7338 5.367302 TCATCAGTTCATCACACACTTGAA 58.633 37.500 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.