Multiple sequence alignment - TraesCS1A01G207900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G207900 chr1A 100.000 3932 0 0 1 3932 369578427 369582358 0.000000e+00 7262.0
1 TraesCS1A01G207900 chr1A 95.015 682 32 2 3252 3932 30648721 30649401 0.000000e+00 1070.0
2 TraesCS1A01G207900 chr1A 90.323 155 11 2 1045 1198 369517848 369517999 2.400000e-47 200.0
3 TraesCS1A01G207900 chr1D 90.815 2428 140 33 544 2934 297155988 297158369 0.000000e+00 3171.0
4 TraesCS1A01G207900 chr1D 92.870 547 36 2 1 547 216129811 216130354 0.000000e+00 791.0
5 TraesCS1A01G207900 chr1D 88.136 118 14 0 2447 2564 296992590 296992707 1.470000e-29 141.0
6 TraesCS1A01G207900 chr1D 86.290 124 16 1 1763 1885 296991805 296991928 2.460000e-27 134.0
7 TraesCS1A01G207900 chr1B 90.968 2170 132 27 665 2811 399316123 399318251 0.000000e+00 2863.0
8 TraesCS1A01G207900 chr5D 95.766 685 27 2 3249 3932 225746684 225747367 0.000000e+00 1103.0
9 TraesCS1A01G207900 chr2D 95.481 686 28 3 3249 3932 5420096 5419412 0.000000e+00 1092.0
10 TraesCS1A01G207900 chr2D 95.161 682 29 4 3252 3932 2079148 2078470 0.000000e+00 1074.0
11 TraesCS1A01G207900 chr2D 92.896 549 35 3 1 548 34889558 34890103 0.000000e+00 795.0
12 TraesCS1A01G207900 chr6D 95.190 686 30 3 3248 3932 224416605 224417288 0.000000e+00 1081.0
13 TraesCS1A01G207900 chr6D 93.478 46 2 1 3170 3214 262522839 262522884 2.540000e-07 67.6
14 TraesCS1A01G207900 chr6D 94.737 38 1 1 3179 3216 25813578 25813542 1.530000e-04 58.4
15 TraesCS1A01G207900 chr7D 94.868 682 29 3 3252 3932 371842872 371842196 0.000000e+00 1061.0
16 TraesCS1A01G207900 chr7B 94.575 682 35 2 3252 3932 552843930 552843250 0.000000e+00 1053.0
17 TraesCS1A01G207900 chr7B 93.988 682 39 2 3252 3932 73126861 73126181 0.000000e+00 1031.0
18 TraesCS1A01G207900 chr7B 95.100 551 26 1 1 551 26020461 26019912 0.000000e+00 867.0
19 TraesCS1A01G207900 chr6A 94.575 682 35 2 3252 3932 277536283 277536963 0.000000e+00 1053.0
20 TraesCS1A01G207900 chr6A 95.273 550 25 1 1 550 560198157 560197609 0.000000e+00 870.0
21 TraesCS1A01G207900 chr6A 77.931 145 17 13 3076 3214 48903084 48902949 4.210000e-10 76.8
22 TraesCS1A01G207900 chr4D 96.350 548 19 1 1 548 374825305 374825851 0.000000e+00 900.0
23 TraesCS1A01G207900 chr7A 95.963 545 21 1 1 545 608547338 608547881 0.000000e+00 883.0
24 TraesCS1A01G207900 chr7A 95.795 547 22 1 1 547 101804010 101804555 0.000000e+00 881.0
25 TraesCS1A01G207900 chr5A 95.430 547 24 1 1 547 671206036 671206581 0.000000e+00 870.0
26 TraesCS1A01G207900 chr5A 97.959 49 1 0 3170 3218 669903402 669903450 7.000000e-13 86.1
27 TraesCS1A01G207900 chr4B 94.585 554 28 2 1 553 180199080 180199632 0.000000e+00 856.0
28 TraesCS1A01G207900 chr6B 97.778 45 1 0 3170 3214 217168792 217168748 1.170000e-10 78.7
29 TraesCS1A01G207900 chr3B 89.474 57 4 1 3160 3214 564672082 564672026 1.960000e-08 71.3
30 TraesCS1A01G207900 chr3B 93.617 47 3 0 3170 3216 829112510 829112464 1.960000e-08 71.3
31 TraesCS1A01G207900 chr3A 89.655 58 2 3 3161 3218 750279806 750279859 1.960000e-08 71.3
32 TraesCS1A01G207900 chr3D 97.059 34 1 0 3172 3205 7125095 7125062 1.530000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G207900 chr1A 369578427 369582358 3931 False 7262 7262 100.000 1 3932 1 chr1A.!!$F3 3931
1 TraesCS1A01G207900 chr1A 30648721 30649401 680 False 1070 1070 95.015 3252 3932 1 chr1A.!!$F1 680
2 TraesCS1A01G207900 chr1D 297155988 297158369 2381 False 3171 3171 90.815 544 2934 1 chr1D.!!$F2 2390
3 TraesCS1A01G207900 chr1D 216129811 216130354 543 False 791 791 92.870 1 547 1 chr1D.!!$F1 546
4 TraesCS1A01G207900 chr1B 399316123 399318251 2128 False 2863 2863 90.968 665 2811 1 chr1B.!!$F1 2146
5 TraesCS1A01G207900 chr5D 225746684 225747367 683 False 1103 1103 95.766 3249 3932 1 chr5D.!!$F1 683
6 TraesCS1A01G207900 chr2D 5419412 5420096 684 True 1092 1092 95.481 3249 3932 1 chr2D.!!$R2 683
7 TraesCS1A01G207900 chr2D 2078470 2079148 678 True 1074 1074 95.161 3252 3932 1 chr2D.!!$R1 680
8 TraesCS1A01G207900 chr2D 34889558 34890103 545 False 795 795 92.896 1 548 1 chr2D.!!$F1 547
9 TraesCS1A01G207900 chr6D 224416605 224417288 683 False 1081 1081 95.190 3248 3932 1 chr6D.!!$F1 684
10 TraesCS1A01G207900 chr7D 371842196 371842872 676 True 1061 1061 94.868 3252 3932 1 chr7D.!!$R1 680
11 TraesCS1A01G207900 chr7B 552843250 552843930 680 True 1053 1053 94.575 3252 3932 1 chr7B.!!$R3 680
12 TraesCS1A01G207900 chr7B 73126181 73126861 680 True 1031 1031 93.988 3252 3932 1 chr7B.!!$R2 680
13 TraesCS1A01G207900 chr7B 26019912 26020461 549 True 867 867 95.100 1 551 1 chr7B.!!$R1 550
14 TraesCS1A01G207900 chr6A 277536283 277536963 680 False 1053 1053 94.575 3252 3932 1 chr6A.!!$F1 680
15 TraesCS1A01G207900 chr6A 560197609 560198157 548 True 870 870 95.273 1 550 1 chr6A.!!$R2 549
16 TraesCS1A01G207900 chr4D 374825305 374825851 546 False 900 900 96.350 1 548 1 chr4D.!!$F1 547
17 TraesCS1A01G207900 chr7A 608547338 608547881 543 False 883 883 95.963 1 545 1 chr7A.!!$F2 544
18 TraesCS1A01G207900 chr7A 101804010 101804555 545 False 881 881 95.795 1 547 1 chr7A.!!$F1 546
19 TraesCS1A01G207900 chr5A 671206036 671206581 545 False 870 870 95.430 1 547 1 chr5A.!!$F2 546
20 TraesCS1A01G207900 chr4B 180199080 180199632 552 False 856 856 94.585 1 553 1 chr4B.!!$F1 552

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
589 593 0.320374 TAGGTGTTGAGGTTGAGGCG 59.680 55.0 0.0 0.0 0.0 5.52 F
1569 1603 0.173481 TTGAGAAGGAGGATGTCGCG 59.827 55.0 0.0 0.0 0.0 5.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1776 1820 0.835971 TCCTGCAAGTAGGCCTGTCA 60.836 55.0 17.99 4.82 37.76 3.58 R
3108 3168 0.034198 TACACTAGCAGGCGCAAACA 59.966 50.0 10.83 0.00 42.27 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 5.622460 GCGAGGAATCTCTTTGAAGTAGTCA 60.622 44.000 0.00 0.00 37.86 3.41
420 423 6.087522 CGTTTGAAAATATAGCCGTTGGAAA 58.912 36.000 0.00 0.00 0.00 3.13
532 536 4.157656 CACGTCCAAATTTACACCATCCAT 59.842 41.667 0.00 0.00 0.00 3.41
535 539 6.434652 ACGTCCAAATTTACACCATCCATTAA 59.565 34.615 0.00 0.00 0.00 1.40
589 593 0.320374 TAGGTGTTGAGGTTGAGGCG 59.680 55.000 0.00 0.00 0.00 5.52
655 659 3.669122 GTGCAGCGGAAACTATATACGAG 59.331 47.826 0.00 0.00 0.00 4.18
663 667 7.811713 AGCGGAAACTATATACGAGAAATAACC 59.188 37.037 0.00 0.00 0.00 2.85
672 682 4.985044 ACGAGAAATAACCAGTCAAACG 57.015 40.909 0.00 0.00 0.00 3.60
684 695 2.052237 CAAACGCAGTGACACGGC 60.052 61.111 19.29 19.29 45.00 5.68
758 770 1.151668 CAGAACAACCTGAGCTTCGG 58.848 55.000 0.00 0.00 36.29 4.30
877 889 3.414193 TCTCCCTCCCGTCCGCTA 61.414 66.667 0.00 0.00 0.00 4.26
900 912 4.957327 AGGTCCAAAGTCTCCTCTACATAC 59.043 45.833 0.00 0.00 0.00 2.39
901 913 4.710375 GGTCCAAAGTCTCCTCTACATACA 59.290 45.833 0.00 0.00 0.00 2.29
929 944 4.156622 GCTTAAACCCGCGCGTCC 62.157 66.667 29.95 3.35 0.00 4.79
959 974 2.922503 TCCTGGTGCGAGCTCCAA 60.923 61.111 17.88 3.79 38.84 3.53
963 978 1.294659 CTGGTGCGAGCTCCAAGAAC 61.295 60.000 17.88 0.00 38.84 3.01
975 990 1.219393 CAAGAACCGAGGAGGAGCC 59.781 63.158 0.00 0.00 45.00 4.70
1040 1058 1.663739 CGGTGGAGGACGAGAACAA 59.336 57.895 0.00 0.00 0.00 2.83
1206 1224 1.226575 TACGTGCTCGCCTTCATCG 60.227 57.895 8.29 0.00 41.18 3.84
1216 1234 1.370051 CCTTCATCGCGCATGCATG 60.370 57.895 22.70 22.70 42.97 4.06
1222 1241 2.651367 ATCGCGCATGCATGTTTCCG 62.651 55.000 26.79 21.40 42.97 4.30
1234 1253 4.028490 TTTCCGGCCGGCATCTGT 62.028 61.111 39.89 0.00 34.68 3.41
1335 1364 0.390998 GCAGGTGAGCTCCTTCAGAC 60.391 60.000 12.15 0.67 35.37 3.51
1406 1435 1.698532 TGCCGGAAAACCAAGGTACTA 59.301 47.619 5.05 0.00 38.49 1.82
1408 1437 2.289882 GCCGGAAAACCAAGGTACTACT 60.290 50.000 5.05 0.00 38.49 2.57
1409 1438 3.593096 CCGGAAAACCAAGGTACTACTC 58.407 50.000 0.00 0.00 38.49 2.59
1410 1439 3.260128 CCGGAAAACCAAGGTACTACTCT 59.740 47.826 0.00 0.00 38.49 3.24
1435 1469 4.829064 TTCTTCCGGTTGAATGTTGAAG 57.171 40.909 0.00 0.00 31.06 3.02
1436 1470 4.079980 TCTTCCGGTTGAATGTTGAAGA 57.920 40.909 0.00 0.00 36.73 2.87
1437 1471 4.065088 TCTTCCGGTTGAATGTTGAAGAG 58.935 43.478 0.00 0.00 34.81 2.85
1501 1535 5.801350 TGAAAGGTTTCATCTGCTTATCG 57.199 39.130 0.87 0.00 41.88 2.92
1502 1536 5.487433 TGAAAGGTTTCATCTGCTTATCGA 58.513 37.500 0.87 0.00 41.88 3.59
1516 1550 3.485877 GCTTATCGACTTGCACAATGTCC 60.486 47.826 0.00 0.00 0.00 4.02
1551 1585 1.701847 AGGTGTGAGAAGCTGGTGATT 59.298 47.619 0.00 0.00 0.00 2.57
1560 1594 3.055240 AGAAGCTGGTGATTGAGAAGGAG 60.055 47.826 0.00 0.00 0.00 3.69
1569 1603 0.173481 TTGAGAAGGAGGATGTCGCG 59.827 55.000 0.00 0.00 0.00 5.87
1714 1757 8.201554 TCAGACATGCTCTGTATGTTTTTATC 57.798 34.615 18.61 0.00 45.35 1.75
1718 1762 7.978982 ACATGCTCTGTATGTTTTTATCAGTC 58.021 34.615 0.00 0.00 35.48 3.51
1753 1797 9.512588 AGATGATTATTCACAACTGAAGTTTCT 57.487 29.630 0.00 0.00 39.83 2.52
1755 1799 9.903682 ATGATTATTCACAACTGAAGTTTCTTG 57.096 29.630 0.00 0.00 39.83 3.02
1756 1800 8.902806 TGATTATTCACAACTGAAGTTTCTTGT 58.097 29.630 0.00 0.00 39.83 3.16
1760 1804 7.636259 TTCACAACTGAAGTTTCTTGTTTTG 57.364 32.000 0.00 9.18 35.83 2.44
1761 1805 6.155827 TCACAACTGAAGTTTCTTGTTTTGG 58.844 36.000 0.00 3.75 35.83 3.28
1776 1820 5.491323 TGTTTTGGGGTTTCAGAAAACTT 57.509 34.783 10.83 0.00 43.55 2.66
1782 1826 3.068165 GGGGTTTCAGAAAACTTGACAGG 59.932 47.826 10.83 0.00 43.55 4.00
1786 1830 4.431416 TTCAGAAAACTTGACAGGCCTA 57.569 40.909 3.98 0.00 0.00 3.93
1787 1831 3.740115 TCAGAAAACTTGACAGGCCTAC 58.260 45.455 3.98 3.09 0.00 3.18
1788 1832 3.391296 TCAGAAAACTTGACAGGCCTACT 59.609 43.478 3.98 0.00 0.00 2.57
1883 1927 8.816640 CAGTTAATCTGCACAAGGTAAAATTT 57.183 30.769 0.00 0.00 37.36 1.82
1884 1928 9.260002 CAGTTAATCTGCACAAGGTAAAATTTT 57.740 29.630 8.75 8.75 37.36 1.82
1885 1929 9.830975 AGTTAATCTGCACAAGGTAAAATTTTT 57.169 25.926 9.06 0.00 0.00 1.94
1916 1960 4.848562 ATCCGATGTCGTAGCATTCTAA 57.151 40.909 1.44 0.00 37.74 2.10
1917 1961 4.642445 TCCGATGTCGTAGCATTCTAAA 57.358 40.909 1.44 0.00 37.74 1.85
1980 2025 6.405176 CCAAAATCTATGAGCCAGAACTTTCC 60.405 42.308 0.00 0.00 0.00 3.13
2006 2051 6.430000 GCAATTTACCTTAGGAAACTGACTCA 59.570 38.462 4.77 0.00 43.88 3.41
2025 2070 4.223923 ACTCAGATTTCCACTGTAGGGAAG 59.776 45.833 0.00 0.00 44.70 3.46
2137 2182 3.854666 AGGTGAGTCAGATCATTCAACG 58.145 45.455 0.00 0.00 32.64 4.10
2164 2209 2.552315 TCCTGAATTTTCGAACACTGCC 59.448 45.455 0.00 0.00 0.00 4.85
2199 2244 0.254178 AGGATGGCACGCTTCTGAAT 59.746 50.000 0.00 0.00 0.00 2.57
2263 2308 4.487714 TGGGGTTCTATGATGAACTCAC 57.512 45.455 9.11 1.76 46.24 3.51
2349 2394 1.301716 GCAGACGAAGAAGTGGCCA 60.302 57.895 0.00 0.00 0.00 5.36
2359 2404 0.908198 GAAGTGGCCACATCTCTCCT 59.092 55.000 36.39 11.61 0.00 3.69
2380 2425 3.815401 CTGAAAGTACAACCCCTTGTCAG 59.185 47.826 0.00 0.00 41.15 3.51
2460 2506 0.319083 TTGCATTGCAGGCCAAAGAG 59.681 50.000 11.76 0.00 40.61 2.85
2497 2543 1.199615 GGAGGAGGTGAAGAAGAGGG 58.800 60.000 0.00 0.00 0.00 4.30
2508 2554 0.106719 AGAAGAGGGAGGAGCTCGAG 60.107 60.000 8.45 8.45 0.00 4.04
2588 2634 2.846652 CGGTCGAGGAGGAATCCGG 61.847 68.421 0.00 0.00 35.25 5.14
2712 2764 4.176851 GCCTCGTCGTCTCCGTCC 62.177 72.222 0.00 0.00 35.01 4.79
2888 2940 3.142162 TGCCGCGGTCGAGGAATA 61.142 61.111 28.70 0.00 37.24 1.75
2891 2943 1.588139 CCGCGGTCGAGGAATACAC 60.588 63.158 19.50 0.00 37.24 2.90
2934 2994 0.243636 GGTGCCCGTTTCCTTGAATG 59.756 55.000 0.00 0.00 0.00 2.67
2935 2995 0.958822 GTGCCCGTTTCCTTGAATGT 59.041 50.000 0.00 0.00 0.00 2.71
2936 2996 2.156098 GTGCCCGTTTCCTTGAATGTA 58.844 47.619 0.00 0.00 0.00 2.29
2937 2997 2.752903 GTGCCCGTTTCCTTGAATGTAT 59.247 45.455 0.00 0.00 0.00 2.29
2938 2998 3.192633 GTGCCCGTTTCCTTGAATGTATT 59.807 43.478 0.00 0.00 0.00 1.89
2939 2999 3.829601 TGCCCGTTTCCTTGAATGTATTT 59.170 39.130 0.00 0.00 0.00 1.40
2940 3000 4.282195 TGCCCGTTTCCTTGAATGTATTTT 59.718 37.500 0.00 0.00 0.00 1.82
2941 3001 4.862574 GCCCGTTTCCTTGAATGTATTTTC 59.137 41.667 0.00 0.00 0.00 2.29
2942 3002 5.092781 CCCGTTTCCTTGAATGTATTTTCG 58.907 41.667 0.00 0.00 0.00 3.46
2943 3003 5.106475 CCCGTTTCCTTGAATGTATTTTCGA 60.106 40.000 0.00 0.00 0.00 3.71
2944 3004 6.404293 CCCGTTTCCTTGAATGTATTTTCGAT 60.404 38.462 0.00 0.00 0.00 3.59
2945 3005 6.687105 CCGTTTCCTTGAATGTATTTTCGATC 59.313 38.462 0.00 0.00 0.00 3.69
2946 3006 7.240674 CGTTTCCTTGAATGTATTTTCGATCA 58.759 34.615 0.00 0.00 0.00 2.92
2947 3007 7.216317 CGTTTCCTTGAATGTATTTTCGATCAC 59.784 37.037 0.00 0.00 0.00 3.06
2948 3008 7.921786 TTCCTTGAATGTATTTTCGATCACT 57.078 32.000 0.00 0.00 0.00 3.41
2949 3009 7.539712 TCCTTGAATGTATTTTCGATCACTC 57.460 36.000 0.00 0.00 0.00 3.51
2950 3010 7.102993 TCCTTGAATGTATTTTCGATCACTCA 58.897 34.615 0.00 0.00 0.00 3.41
2951 3011 7.064609 TCCTTGAATGTATTTTCGATCACTCAC 59.935 37.037 0.00 0.00 0.00 3.51
2952 3012 6.331170 TGAATGTATTTTCGATCACTCACG 57.669 37.500 0.00 0.00 0.00 4.35
2953 3013 4.778842 ATGTATTTTCGATCACTCACGC 57.221 40.909 0.00 0.00 0.00 5.34
2954 3014 3.845178 TGTATTTTCGATCACTCACGCT 58.155 40.909 0.00 0.00 0.00 5.07
2955 3015 3.857665 TGTATTTTCGATCACTCACGCTC 59.142 43.478 0.00 0.00 0.00 5.03
2956 3016 2.432206 TTTTCGATCACTCACGCTCA 57.568 45.000 0.00 0.00 0.00 4.26
2957 3017 1.698165 TTTCGATCACTCACGCTCAC 58.302 50.000 0.00 0.00 0.00 3.51
2958 3018 0.109272 TTCGATCACTCACGCTCACC 60.109 55.000 0.00 0.00 0.00 4.02
2959 3019 0.960861 TCGATCACTCACGCTCACCT 60.961 55.000 0.00 0.00 0.00 4.00
2960 3020 0.799917 CGATCACTCACGCTCACCTG 60.800 60.000 0.00 0.00 0.00 4.00
2961 3021 1.079543 ATCACTCACGCTCACCTGC 60.080 57.895 0.00 0.00 0.00 4.85
2962 3022 2.513026 ATCACTCACGCTCACCTGCC 62.513 60.000 0.00 0.00 0.00 4.85
2963 3023 3.233980 ACTCACGCTCACCTGCCA 61.234 61.111 0.00 0.00 0.00 4.92
2964 3024 2.031012 CTCACGCTCACCTGCCAA 59.969 61.111 0.00 0.00 0.00 4.52
2965 3025 1.376424 CTCACGCTCACCTGCCAAT 60.376 57.895 0.00 0.00 0.00 3.16
2966 3026 1.364626 CTCACGCTCACCTGCCAATC 61.365 60.000 0.00 0.00 0.00 2.67
2967 3027 2.434884 ACGCTCACCTGCCAATCG 60.435 61.111 0.00 0.00 0.00 3.34
2968 3028 3.869272 CGCTCACCTGCCAATCGC 61.869 66.667 0.00 0.00 38.31 4.58
2969 3029 3.869272 GCTCACCTGCCAATCGCG 61.869 66.667 0.00 0.00 42.08 5.87
2970 3030 2.434884 CTCACCTGCCAATCGCGT 60.435 61.111 5.77 0.00 42.08 6.01
2971 3031 2.741985 TCACCTGCCAATCGCGTG 60.742 61.111 5.77 0.00 42.08 5.34
2972 3032 2.741985 CACCTGCCAATCGCGTGA 60.742 61.111 5.77 0.00 42.08 4.35
2973 3033 2.108514 CACCTGCCAATCGCGTGAT 61.109 57.895 5.43 5.43 42.08 3.06
2974 3034 2.108514 ACCTGCCAATCGCGTGATG 61.109 57.895 13.09 6.81 42.08 3.07
2975 3035 2.023741 CTGCCAATCGCGTGATGC 59.976 61.111 13.09 12.96 42.08 3.91
2976 3036 2.745492 TGCCAATCGCGTGATGCA 60.745 55.556 17.18 17.18 46.97 3.96
2977 3037 2.255994 CTGCCAATCGCGTGATGCAA 62.256 55.000 20.30 8.52 46.97 4.08
2978 3038 1.064621 GCCAATCGCGTGATGCAAT 59.935 52.632 13.09 0.00 46.97 3.56
2979 3039 0.931662 GCCAATCGCGTGATGCAATC 60.932 55.000 13.09 0.00 46.97 2.67
2980 3040 0.317269 CCAATCGCGTGATGCAATCC 60.317 55.000 13.09 0.00 44.73 3.01
2981 3041 0.377905 CAATCGCGTGATGCAATCCA 59.622 50.000 13.09 0.00 44.73 3.41
2982 3042 1.002142 CAATCGCGTGATGCAATCCAT 60.002 47.619 13.09 0.00 44.73 3.41
2991 3051 3.219176 GATGCAATCCATCCAAGAGGA 57.781 47.619 0.00 0.00 43.72 3.71
2992 3052 3.764218 GATGCAATCCATCCAAGAGGAT 58.236 45.455 0.00 0.00 44.70 3.24
2999 3059 4.399764 TCCAAGAGGATGCCCGAT 57.600 55.556 0.00 0.00 39.61 4.18
3000 3060 1.832219 TCCAAGAGGATGCCCGATG 59.168 57.895 0.00 0.00 39.61 3.84
3001 3061 0.982852 TCCAAGAGGATGCCCGATGT 60.983 55.000 0.00 0.00 39.61 3.06
3002 3062 0.107017 CCAAGAGGATGCCCGATGTT 60.107 55.000 0.00 0.00 36.89 2.71
3003 3063 1.019673 CAAGAGGATGCCCGATGTTG 58.980 55.000 0.00 0.00 37.58 3.33
3004 3064 0.620556 AAGAGGATGCCCGATGTTGT 59.379 50.000 0.00 0.00 37.58 3.32
3005 3065 0.107508 AGAGGATGCCCGATGTTGTG 60.108 55.000 0.00 0.00 37.58 3.33
3006 3066 1.718757 GAGGATGCCCGATGTTGTGC 61.719 60.000 0.00 0.00 37.58 4.57
3007 3067 1.750399 GGATGCCCGATGTTGTGCT 60.750 57.895 0.00 0.00 0.00 4.40
3008 3068 1.718757 GGATGCCCGATGTTGTGCTC 61.719 60.000 0.00 0.00 0.00 4.26
3009 3069 2.040213 GATGCCCGATGTTGTGCTCG 62.040 60.000 0.00 0.00 34.73 5.03
3010 3070 2.434185 GCCCGATGTTGTGCTCGA 60.434 61.111 0.00 0.00 37.05 4.04
3011 3071 2.456119 GCCCGATGTTGTGCTCGAG 61.456 63.158 8.45 8.45 37.05 4.04
3012 3072 2.456119 CCCGATGTTGTGCTCGAGC 61.456 63.158 30.42 30.42 37.05 5.03
3013 3073 2.456119 CCGATGTTGTGCTCGAGCC 61.456 63.158 33.23 23.92 41.18 4.70
3014 3074 2.792290 CGATGTTGTGCTCGAGCCG 61.792 63.158 33.23 22.89 41.18 5.52
3015 3075 1.446099 GATGTTGTGCTCGAGCCGA 60.446 57.895 33.23 21.01 41.18 5.54
3016 3076 1.687494 GATGTTGTGCTCGAGCCGAC 61.687 60.000 33.23 29.26 41.18 4.79
3017 3077 2.355837 GTTGTGCTCGAGCCGACA 60.356 61.111 33.23 27.47 41.18 4.35
3018 3078 2.355837 TTGTGCTCGAGCCGACAC 60.356 61.111 33.23 24.20 41.18 3.67
3019 3079 3.858868 TTGTGCTCGAGCCGACACC 62.859 63.158 33.23 14.65 41.18 4.16
3020 3080 4.357947 GTGCTCGAGCCGACACCA 62.358 66.667 33.23 11.24 41.18 4.17
3021 3081 4.357947 TGCTCGAGCCGACACCAC 62.358 66.667 33.23 4.42 41.18 4.16
3023 3083 4.778415 CTCGAGCCGACACCACCG 62.778 72.222 0.00 0.00 0.00 4.94
3028 3088 4.501714 GCCGACACCACCGCGATA 62.502 66.667 8.23 0.00 0.00 2.92
3029 3089 2.278596 CCGACACCACCGCGATAG 60.279 66.667 8.23 0.00 0.00 2.08
3030 3090 2.278596 CGACACCACCGCGATAGG 60.279 66.667 8.23 8.99 37.30 2.57
3031 3091 2.767445 CGACACCACCGCGATAGGA 61.767 63.158 8.23 0.00 34.73 2.94
3032 3092 1.740285 GACACCACCGCGATAGGAT 59.260 57.895 8.23 0.06 34.73 3.24
3033 3093 0.956633 GACACCACCGCGATAGGATA 59.043 55.000 8.23 0.00 34.73 2.59
3034 3094 0.672342 ACACCACCGCGATAGGATAC 59.328 55.000 8.23 0.00 34.73 2.24
3035 3095 0.386858 CACCACCGCGATAGGATACG 60.387 60.000 8.23 0.00 46.39 3.06
3036 3096 0.820891 ACCACCGCGATAGGATACGT 60.821 55.000 8.23 0.00 46.39 3.57
3037 3097 0.109873 CCACCGCGATAGGATACGTC 60.110 60.000 8.23 0.00 46.39 4.34
3038 3098 0.589708 CACCGCGATAGGATACGTCA 59.410 55.000 8.23 0.00 46.39 4.35
3039 3099 1.199327 CACCGCGATAGGATACGTCAT 59.801 52.381 8.23 0.00 46.39 3.06
3040 3100 1.467734 ACCGCGATAGGATACGTCATC 59.532 52.381 8.23 0.00 46.39 2.92
3041 3101 1.738350 CCGCGATAGGATACGTCATCT 59.262 52.381 8.23 0.00 46.39 2.90
3042 3102 2.223066 CCGCGATAGGATACGTCATCTC 60.223 54.545 8.23 0.00 46.39 2.75
3043 3103 2.535137 CGCGATAGGATACGTCATCTCG 60.535 54.545 0.00 1.60 46.39 4.04
3044 3104 2.223066 GCGATAGGATACGTCATCTCGG 60.223 54.545 0.00 0.00 46.39 4.63
3045 3105 3.259902 CGATAGGATACGTCATCTCGGA 58.740 50.000 0.00 0.00 46.39 4.55
3046 3106 3.307512 CGATAGGATACGTCATCTCGGAG 59.692 52.174 0.00 0.00 46.39 4.63
3047 3107 2.932855 AGGATACGTCATCTCGGAGA 57.067 50.000 10.62 10.62 46.39 3.71
3059 3119 1.511305 TCGGAGAGTTAGCCTTGCG 59.489 57.895 0.00 0.00 0.00 4.85
3060 3120 1.215647 CGGAGAGTTAGCCTTGCGT 59.784 57.895 0.00 0.00 0.00 5.24
3061 3121 0.454600 CGGAGAGTTAGCCTTGCGTA 59.545 55.000 0.00 0.00 0.00 4.42
3062 3122 1.534175 CGGAGAGTTAGCCTTGCGTAG 60.534 57.143 0.00 0.00 0.00 3.51
3072 3132 2.854522 CTTGCGTAGGACTTTGGGG 58.145 57.895 0.00 0.00 0.00 4.96
3073 3133 0.323629 CTTGCGTAGGACTTTGGGGA 59.676 55.000 0.00 0.00 0.00 4.81
3074 3134 0.988832 TTGCGTAGGACTTTGGGGAT 59.011 50.000 0.00 0.00 0.00 3.85
3075 3135 0.251916 TGCGTAGGACTTTGGGGATG 59.748 55.000 0.00 0.00 0.00 3.51
3076 3136 0.539986 GCGTAGGACTTTGGGGATGA 59.460 55.000 0.00 0.00 0.00 2.92
3077 3137 1.473434 GCGTAGGACTTTGGGGATGAG 60.473 57.143 0.00 0.00 0.00 2.90
3078 3138 1.473434 CGTAGGACTTTGGGGATGAGC 60.473 57.143 0.00 0.00 0.00 4.26
3079 3139 1.559682 GTAGGACTTTGGGGATGAGCA 59.440 52.381 0.00 0.00 0.00 4.26
3080 3140 0.329596 AGGACTTTGGGGATGAGCAC 59.670 55.000 0.00 0.00 0.00 4.40
3081 3141 0.329596 GGACTTTGGGGATGAGCACT 59.670 55.000 0.00 0.00 0.00 4.40
3082 3142 1.680249 GGACTTTGGGGATGAGCACTC 60.680 57.143 0.00 0.00 0.00 3.51
3083 3143 0.329596 ACTTTGGGGATGAGCACTCC 59.670 55.000 0.00 0.00 0.00 3.85
3088 3148 4.390341 GGATGAGCACTCCCTCCT 57.610 61.111 8.42 0.00 31.48 3.69
3089 3149 2.132300 GGATGAGCACTCCCTCCTC 58.868 63.158 8.42 0.00 31.48 3.71
3090 3150 1.406860 GGATGAGCACTCCCTCCTCC 61.407 65.000 8.42 0.00 38.75 4.30
3091 3151 0.398381 GATGAGCACTCCCTCCTCCT 60.398 60.000 0.00 0.00 0.00 3.69
3092 3152 0.398381 ATGAGCACTCCCTCCTCCTC 60.398 60.000 0.00 0.00 0.00 3.71
3093 3153 2.043450 AGCACTCCCTCCTCCTCG 60.043 66.667 0.00 0.00 0.00 4.63
3094 3154 2.363147 GCACTCCCTCCTCCTCGT 60.363 66.667 0.00 0.00 0.00 4.18
3095 3155 2.716017 GCACTCCCTCCTCCTCGTG 61.716 68.421 0.00 0.00 0.00 4.35
3096 3156 2.363147 ACTCCCTCCTCCTCGTGC 60.363 66.667 0.00 0.00 0.00 5.34
3097 3157 2.043450 CTCCCTCCTCCTCGTGCT 60.043 66.667 0.00 0.00 0.00 4.40
3098 3158 2.043852 TCCCTCCTCCTCGTGCTC 60.044 66.667 0.00 0.00 0.00 4.26
3099 3159 3.522731 CCCTCCTCCTCGTGCTCG 61.523 72.222 0.81 0.81 38.55 5.03
3100 3160 3.522731 CCTCCTCCTCGTGCTCGG 61.523 72.222 8.49 0.00 37.69 4.63
3101 3161 3.522731 CTCCTCCTCGTGCTCGGG 61.523 72.222 8.49 4.42 37.69 5.14
3106 3166 4.899239 CCTCGTGCTCGGGCCATC 62.899 72.222 3.94 0.00 36.05 3.51
3107 3167 4.147449 CTCGTGCTCGGGCCATCA 62.147 66.667 3.94 0.00 37.74 3.07
3108 3168 3.451556 CTCGTGCTCGGGCCATCAT 62.452 63.158 3.94 0.00 37.74 2.45
3109 3169 3.274586 CGTGCTCGGGCCATCATG 61.275 66.667 3.94 0.00 37.74 3.07
3110 3170 2.124570 GTGCTCGGGCCATCATGT 60.125 61.111 3.94 0.00 37.74 3.21
3111 3171 1.750399 GTGCTCGGGCCATCATGTT 60.750 57.895 3.94 0.00 37.74 2.71
3112 3172 1.001020 TGCTCGGGCCATCATGTTT 60.001 52.632 3.94 0.00 37.74 2.83
3113 3173 1.314534 TGCTCGGGCCATCATGTTTG 61.315 55.000 3.94 0.00 37.74 2.93
3114 3174 1.434696 CTCGGGCCATCATGTTTGC 59.565 57.895 4.39 0.00 0.00 3.68
3115 3175 2.102749 CGGGCCATCATGTTTGCG 59.897 61.111 4.39 0.00 0.00 4.85
3116 3176 2.202783 GGGCCATCATGTTTGCGC 60.203 61.111 4.39 0.00 0.00 6.09
3117 3177 2.202783 GGCCATCATGTTTGCGCC 60.203 61.111 4.18 11.73 0.00 6.53
3118 3178 2.713967 GGCCATCATGTTTGCGCCT 61.714 57.895 4.18 0.00 33.50 5.52
3119 3179 1.517694 GCCATCATGTTTGCGCCTG 60.518 57.895 4.18 0.00 0.00 4.85
3120 3180 1.517694 CCATCATGTTTGCGCCTGC 60.518 57.895 4.18 0.00 43.20 4.85
3121 3181 1.509463 CATCATGTTTGCGCCTGCT 59.491 52.632 4.18 0.00 43.34 4.24
3122 3182 0.734309 CATCATGTTTGCGCCTGCTA 59.266 50.000 4.18 0.00 43.34 3.49
3123 3183 1.019673 ATCATGTTTGCGCCTGCTAG 58.980 50.000 4.18 0.00 43.34 3.42
3124 3184 0.321564 TCATGTTTGCGCCTGCTAGT 60.322 50.000 4.18 0.00 43.34 2.57
3125 3185 0.179181 CATGTTTGCGCCTGCTAGTG 60.179 55.000 4.18 0.00 43.34 2.74
3126 3186 0.606401 ATGTTTGCGCCTGCTAGTGT 60.606 50.000 4.18 0.00 43.34 3.55
3127 3187 0.034198 TGTTTGCGCCTGCTAGTGTA 59.966 50.000 4.18 0.00 43.34 2.90
3128 3188 1.338674 TGTTTGCGCCTGCTAGTGTAT 60.339 47.619 4.18 0.00 43.34 2.29
3129 3189 1.062587 GTTTGCGCCTGCTAGTGTATG 59.937 52.381 4.18 0.00 43.34 2.39
3130 3190 0.249120 TTGCGCCTGCTAGTGTATGT 59.751 50.000 4.18 0.00 43.34 2.29
3131 3191 1.107945 TGCGCCTGCTAGTGTATGTA 58.892 50.000 4.18 0.00 43.34 2.29
3132 3192 1.478916 TGCGCCTGCTAGTGTATGTAA 59.521 47.619 4.18 0.00 43.34 2.41
3133 3193 2.102420 TGCGCCTGCTAGTGTATGTAAT 59.898 45.455 4.18 0.00 43.34 1.89
3134 3194 2.476619 GCGCCTGCTAGTGTATGTAATG 59.523 50.000 0.00 0.00 38.39 1.90
3135 3195 3.717707 CGCCTGCTAGTGTATGTAATGT 58.282 45.455 0.00 0.00 0.00 2.71
3136 3196 3.490896 CGCCTGCTAGTGTATGTAATGTG 59.509 47.826 0.00 0.00 0.00 3.21
3137 3197 4.693283 GCCTGCTAGTGTATGTAATGTGA 58.307 43.478 0.00 0.00 0.00 3.58
3138 3198 4.747108 GCCTGCTAGTGTATGTAATGTGAG 59.253 45.833 0.00 0.00 0.00 3.51
3139 3199 5.292765 CCTGCTAGTGTATGTAATGTGAGG 58.707 45.833 0.00 0.00 0.00 3.86
3140 3200 5.163405 CCTGCTAGTGTATGTAATGTGAGGT 60.163 44.000 0.00 0.00 0.00 3.85
3141 3201 6.040504 CCTGCTAGTGTATGTAATGTGAGGTA 59.959 42.308 0.00 0.00 0.00 3.08
3142 3202 7.255977 CCTGCTAGTGTATGTAATGTGAGGTAT 60.256 40.741 0.00 0.00 0.00 2.73
3143 3203 7.658261 TGCTAGTGTATGTAATGTGAGGTATC 58.342 38.462 0.00 0.00 0.00 2.24
3144 3204 7.505923 TGCTAGTGTATGTAATGTGAGGTATCT 59.494 37.037 0.00 0.00 0.00 1.98
3145 3205 9.011095 GCTAGTGTATGTAATGTGAGGTATCTA 57.989 37.037 0.00 0.00 0.00 1.98
3153 3213 7.210174 TGTAATGTGAGGTATCTAATCTGTGC 58.790 38.462 0.00 0.00 0.00 4.57
3154 3214 6.491714 AATGTGAGGTATCTAATCTGTGCT 57.508 37.500 0.00 0.00 0.00 4.40
3155 3215 7.603180 AATGTGAGGTATCTAATCTGTGCTA 57.397 36.000 0.00 0.00 0.00 3.49
3156 3216 7.789202 ATGTGAGGTATCTAATCTGTGCTAT 57.211 36.000 0.00 0.00 0.00 2.97
3157 3217 6.986250 TGTGAGGTATCTAATCTGTGCTATG 58.014 40.000 0.00 0.00 0.00 2.23
3158 3218 5.866633 GTGAGGTATCTAATCTGTGCTATGC 59.133 44.000 0.00 0.00 0.00 3.14
3159 3219 5.777223 TGAGGTATCTAATCTGTGCTATGCT 59.223 40.000 0.00 0.00 0.00 3.79
3160 3220 6.268617 TGAGGTATCTAATCTGTGCTATGCTT 59.731 38.462 0.00 0.00 0.00 3.91
3161 3221 6.696411 AGGTATCTAATCTGTGCTATGCTTC 58.304 40.000 0.00 0.00 0.00 3.86
3162 3222 6.496565 AGGTATCTAATCTGTGCTATGCTTCT 59.503 38.462 0.00 0.00 0.00 2.85
3163 3223 6.589523 GGTATCTAATCTGTGCTATGCTTCTG 59.410 42.308 0.00 0.00 0.00 3.02
3164 3224 4.375272 TCTAATCTGTGCTATGCTTCTGC 58.625 43.478 0.00 0.00 40.20 4.26
3165 3225 3.278668 AATCTGTGCTATGCTTCTGCT 57.721 42.857 0.00 0.00 40.48 4.24
3166 3226 2.306341 TCTGTGCTATGCTTCTGCTC 57.694 50.000 0.00 0.00 40.48 4.26
3167 3227 1.134580 TCTGTGCTATGCTTCTGCTCC 60.135 52.381 0.00 0.00 40.48 4.70
3168 3228 0.614812 TGTGCTATGCTTCTGCTCCA 59.385 50.000 0.00 0.00 40.48 3.86
3169 3229 1.211212 TGTGCTATGCTTCTGCTCCAT 59.789 47.619 0.00 0.00 40.48 3.41
3170 3230 1.872313 GTGCTATGCTTCTGCTCCATC 59.128 52.381 0.00 0.00 40.48 3.51
3171 3231 1.767088 TGCTATGCTTCTGCTCCATCT 59.233 47.619 0.00 0.00 40.48 2.90
3172 3232 2.967887 TGCTATGCTTCTGCTCCATCTA 59.032 45.455 0.00 0.00 40.48 1.98
3173 3233 3.581770 TGCTATGCTTCTGCTCCATCTAT 59.418 43.478 0.00 0.00 40.48 1.98
3174 3234 4.183101 GCTATGCTTCTGCTCCATCTATC 58.817 47.826 0.00 0.00 40.48 2.08
3175 3235 2.808523 TGCTTCTGCTCCATCTATCG 57.191 50.000 0.00 0.00 40.48 2.92
3176 3236 2.310538 TGCTTCTGCTCCATCTATCGA 58.689 47.619 0.00 0.00 40.48 3.59
3177 3237 2.896044 TGCTTCTGCTCCATCTATCGAT 59.104 45.455 2.16 2.16 40.48 3.59
3178 3238 3.252400 GCTTCTGCTCCATCTATCGATG 58.748 50.000 8.54 0.21 40.34 3.84
3179 3239 3.056962 GCTTCTGCTCCATCTATCGATGA 60.057 47.826 8.54 4.07 41.69 2.92
3180 3240 4.560311 GCTTCTGCTCCATCTATCGATGAA 60.560 45.833 8.54 0.00 41.69 2.57
3181 3241 6.024049 GCTTCTGCTCCATCTATCGATGAAA 61.024 44.000 8.54 0.00 41.69 2.69
3182 3242 7.290412 GCTTCTGCTCCATCTATCGATGAAAT 61.290 42.308 8.54 0.00 41.69 2.17
3183 3243 9.204202 GCTTCTGCTCCATCTATCGATGAAATG 62.204 44.444 8.54 8.61 41.69 2.32
3193 3253 7.299787 TCTATCGATGAAATGATATGCAAGC 57.700 36.000 8.54 0.00 0.00 4.01
3194 3254 7.101700 TCTATCGATGAAATGATATGCAAGCT 58.898 34.615 8.54 0.00 0.00 3.74
3195 3255 6.570672 ATCGATGAAATGATATGCAAGCTT 57.429 33.333 0.00 0.00 0.00 3.74
3196 3256 6.381481 TCGATGAAATGATATGCAAGCTTT 57.619 33.333 0.00 0.00 0.00 3.51
3197 3257 6.203647 TCGATGAAATGATATGCAAGCTTTG 58.796 36.000 0.00 0.00 0.00 2.77
3208 3268 2.456942 CAAGCTTTGCATATTCGCGA 57.543 45.000 3.71 3.71 33.35 5.87
3209 3269 2.784505 CAAGCTTTGCATATTCGCGAA 58.215 42.857 25.66 25.66 34.13 4.70
3210 3270 3.170505 CAAGCTTTGCATATTCGCGAAA 58.829 40.909 27.23 15.31 34.87 3.46
3211 3271 3.485947 AGCTTTGCATATTCGCGAAAA 57.514 38.095 27.23 12.39 34.87 2.29
3212 3272 3.832276 AGCTTTGCATATTCGCGAAAAA 58.168 36.364 27.23 19.02 34.87 1.94
3231 3291 4.864704 AAAATAAAATGGTCTGGTGCGT 57.135 36.364 0.00 0.00 0.00 5.24
3232 3292 3.848272 AATAAAATGGTCTGGTGCGTG 57.152 42.857 0.00 0.00 0.00 5.34
3233 3293 1.529226 TAAAATGGTCTGGTGCGTGG 58.471 50.000 0.00 0.00 0.00 4.94
3234 3294 0.467290 AAAATGGTCTGGTGCGTGGT 60.467 50.000 0.00 0.00 0.00 4.16
3235 3295 0.398696 AAATGGTCTGGTGCGTGGTA 59.601 50.000 0.00 0.00 0.00 3.25
3236 3296 0.036388 AATGGTCTGGTGCGTGGTAG 60.036 55.000 0.00 0.00 0.00 3.18
3237 3297 1.192146 ATGGTCTGGTGCGTGGTAGT 61.192 55.000 0.00 0.00 0.00 2.73
3238 3298 1.374252 GGTCTGGTGCGTGGTAGTG 60.374 63.158 0.00 0.00 0.00 2.74
3239 3299 1.374252 GTCTGGTGCGTGGTAGTGG 60.374 63.158 0.00 0.00 0.00 4.00
3240 3300 1.835267 TCTGGTGCGTGGTAGTGGT 60.835 57.895 0.00 0.00 0.00 4.16
3241 3301 1.070786 CTGGTGCGTGGTAGTGGTT 59.929 57.895 0.00 0.00 0.00 3.67
3242 3302 0.534203 CTGGTGCGTGGTAGTGGTTT 60.534 55.000 0.00 0.00 0.00 3.27
3243 3303 0.757512 TGGTGCGTGGTAGTGGTTTA 59.242 50.000 0.00 0.00 0.00 2.01
3244 3304 1.140452 TGGTGCGTGGTAGTGGTTTAA 59.860 47.619 0.00 0.00 0.00 1.52
3245 3305 1.532437 GGTGCGTGGTAGTGGTTTAAC 59.468 52.381 0.00 0.00 0.00 2.01
3246 3306 2.211806 GTGCGTGGTAGTGGTTTAACA 58.788 47.619 0.00 0.00 0.00 2.41
3247 3307 2.032636 GTGCGTGGTAGTGGTTTAACAC 60.033 50.000 0.00 0.00 41.63 3.32
3250 3310 3.995705 GCGTGGTAGTGGTTTAACACATA 59.004 43.478 0.18 0.00 40.48 2.29
3284 3344 7.412853 AAGGGGCGCTTTATTATTTAAAAGA 57.587 32.000 11.46 0.00 35.19 2.52
3404 3464 8.936070 AAAACATGTAGAGTATGTATAACGCA 57.064 30.769 0.00 0.00 37.77 5.24
3420 3480 1.161843 CGCATAAAACGAAGGTGGGT 58.838 50.000 0.00 0.00 0.00 4.51
3453 3513 2.283101 GCTGCCACCCATGTTGGA 60.283 61.111 13.59 0.37 40.96 3.53
3478 3538 2.363975 TAACCCTCGCCGCATCCTT 61.364 57.895 0.00 0.00 0.00 3.36
3563 3623 4.232188 ACGAAGAGTCCTGGTACATCTA 57.768 45.455 0.00 0.00 38.20 1.98
3591 3651 4.464069 ACCTGCATCAGAGAAGTACTTC 57.536 45.455 25.24 25.24 39.78 3.01
3908 3969 0.577269 GCGACGAAGATACCATGCAC 59.423 55.000 0.00 0.00 0.00 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 3.347216 CGGATTTGTTCTTCTGTGGGAT 58.653 45.455 0.00 0.00 0.00 3.85
250 251 2.560504 TCTCACGCAACACAATGAACT 58.439 42.857 0.00 0.00 0.00 3.01
370 372 8.520351 GGCTATATTTCCAACGGCTATATTTTT 58.480 33.333 0.00 0.00 0.00 1.94
425 428 8.089597 TCACTGAAACGTGTAAATTAGGATGTA 58.910 33.333 0.00 0.00 36.33 2.29
428 431 7.972832 TTCACTGAAACGTGTAAATTAGGAT 57.027 32.000 0.00 0.00 36.33 3.24
448 451 7.462571 AATTATACACCTCCCAGTTTTTCAC 57.537 36.000 0.00 0.00 0.00 3.18
556 560 1.270678 ACACCTACGGCCACTTCTTTC 60.271 52.381 2.24 0.00 0.00 2.62
639 643 9.125906 CTGGTTATTTCTCGTATATAGTTTCCG 57.874 37.037 0.00 0.00 0.00 4.30
655 659 4.024387 TCACTGCGTTTGACTGGTTATTTC 60.024 41.667 0.00 0.00 0.00 2.17
663 667 0.043053 CGTGTCACTGCGTTTGACTG 60.043 55.000 11.96 3.34 43.30 3.51
672 682 0.523072 AATGATTGCCGTGTCACTGC 59.477 50.000 12.05 12.05 0.00 4.40
816 828 1.604915 GGAAGAGGAGGAAGCCACC 59.395 63.158 0.00 0.00 34.40 4.61
874 886 2.462723 AGAGGAGACTTTGGACCTAGC 58.537 52.381 0.00 0.00 44.43 3.42
876 888 4.669866 TGTAGAGGAGACTTTGGACCTA 57.330 45.455 0.00 0.00 44.43 3.08
877 889 3.544698 TGTAGAGGAGACTTTGGACCT 57.455 47.619 0.00 0.00 44.43 3.85
913 928 2.433664 AGGACGCGCGGGTTTAAG 60.434 61.111 35.22 3.55 0.00 1.85
915 930 3.223710 TTGAGGACGCGCGGGTTTA 62.224 57.895 35.22 14.51 0.00 2.01
929 944 1.672356 CCAGGACCTTGCGGTTGAG 60.672 63.158 0.00 0.00 45.73 3.02
941 956 3.240134 TTGGAGCTCGCACCAGGAC 62.240 63.158 7.83 0.00 37.92 3.85
959 974 1.684049 CTGGCTCCTCCTCGGTTCT 60.684 63.158 0.00 0.00 35.26 3.01
1022 1037 0.246635 ATTGTTCTCGTCCTCCACCG 59.753 55.000 0.00 0.00 0.00 4.94
1024 1039 2.758979 TCCTATTGTTCTCGTCCTCCAC 59.241 50.000 0.00 0.00 0.00 4.02
1025 1040 3.095912 TCCTATTGTTCTCGTCCTCCA 57.904 47.619 0.00 0.00 0.00 3.86
1026 1041 3.181474 CCTTCCTATTGTTCTCGTCCTCC 60.181 52.174 0.00 0.00 0.00 4.30
1027 1042 3.447944 ACCTTCCTATTGTTCTCGTCCTC 59.552 47.826 0.00 0.00 0.00 3.71
1028 1043 3.195825 CACCTTCCTATTGTTCTCGTCCT 59.804 47.826 0.00 0.00 0.00 3.85
1029 1044 3.056035 ACACCTTCCTATTGTTCTCGTCC 60.056 47.826 0.00 0.00 0.00 4.79
1030 1045 4.189639 ACACCTTCCTATTGTTCTCGTC 57.810 45.455 0.00 0.00 0.00 4.20
1031 1046 4.566987 GAACACCTTCCTATTGTTCTCGT 58.433 43.478 6.47 0.00 43.80 4.18
1032 1047 3.612860 CGAACACCTTCCTATTGTTCTCG 59.387 47.826 10.91 0.00 44.60 4.04
1040 1058 1.203994 CCACGACGAACACCTTCCTAT 59.796 52.381 0.00 0.00 0.00 2.57
1206 1224 2.580326 CCGGAAACATGCATGCGC 60.580 61.111 26.53 15.07 39.24 6.09
1222 1241 2.472909 GCACTTACAGATGCCGGCC 61.473 63.158 26.77 9.73 35.73 6.13
1234 1253 0.108992 GGTCACCGACGATGCACTTA 60.109 55.000 0.00 0.00 32.65 2.24
1335 1364 3.257561 CTTGTCGCGCTCCATCCG 61.258 66.667 5.56 0.00 0.00 4.18
1383 1412 0.822121 ACCTTGGTTTTCCGGCACTC 60.822 55.000 0.00 0.00 44.36 3.51
1406 1435 3.553828 TCAACCGGAAGAAAACAGAGT 57.446 42.857 9.46 0.00 0.00 3.24
1408 1437 4.204012 ACATTCAACCGGAAGAAAACAGA 58.796 39.130 9.46 0.00 39.30 3.41
1409 1438 4.568152 ACATTCAACCGGAAGAAAACAG 57.432 40.909 9.46 6.37 39.30 3.16
1410 1439 4.399618 TCAACATTCAACCGGAAGAAAACA 59.600 37.500 9.46 0.00 39.30 2.83
1435 1469 4.441087 GTGTTGAAGAAATGGAAAACGCTC 59.559 41.667 0.00 0.00 0.00 5.03
1436 1470 4.097892 AGTGTTGAAGAAATGGAAAACGCT 59.902 37.500 0.00 0.00 34.49 5.07
1437 1471 4.359706 AGTGTTGAAGAAATGGAAAACGC 58.640 39.130 0.00 0.00 0.00 4.84
1501 1535 3.250040 AGTTTACGGACATTGTGCAAGTC 59.750 43.478 9.08 0.00 0.00 3.01
1502 1536 3.211045 AGTTTACGGACATTGTGCAAGT 58.789 40.909 9.08 2.01 0.00 3.16
1516 1550 1.343465 ACACCTCACCTGGAGTTTACG 59.657 52.381 0.00 0.00 42.40 3.18
1551 1585 0.965866 ACGCGACATCCTCCTTCTCA 60.966 55.000 15.93 0.00 0.00 3.27
1726 1770 9.766277 GAAACTTCAGTTGTGAATAATCATCTC 57.234 33.333 0.00 0.00 41.96 2.75
1740 1784 4.869861 CCCCAAAACAAGAAACTTCAGTTG 59.130 41.667 0.00 0.00 38.44 3.16
1743 1787 4.736126 ACCCCAAAACAAGAAACTTCAG 57.264 40.909 0.00 0.00 0.00 3.02
1746 1790 5.247337 TCTGAAACCCCAAAACAAGAAACTT 59.753 36.000 0.00 0.00 0.00 2.66
1748 1792 5.079689 TCTGAAACCCCAAAACAAGAAAC 57.920 39.130 0.00 0.00 0.00 2.78
1753 1797 5.491323 AGTTTTCTGAAACCCCAAAACAA 57.509 34.783 1.58 0.00 44.97 2.83
1755 1799 5.350365 GTCAAGTTTTCTGAAACCCCAAAAC 59.650 40.000 1.58 0.00 44.97 2.43
1756 1800 5.012148 TGTCAAGTTTTCTGAAACCCCAAAA 59.988 36.000 1.58 0.00 44.97 2.44
1760 1804 3.068165 CCTGTCAAGTTTTCTGAAACCCC 59.932 47.826 1.58 0.00 44.97 4.95
1761 1805 3.490933 GCCTGTCAAGTTTTCTGAAACCC 60.491 47.826 1.58 0.00 44.97 4.11
1776 1820 0.835971 TCCTGCAAGTAGGCCTGTCA 60.836 55.000 17.99 4.82 37.76 3.58
1782 1826 1.003355 TGCTGTCCTGCAAGTAGGC 60.003 57.895 0.00 0.00 40.29 3.93
1786 1830 1.600076 CTGCTGCTGTCCTGCAAGT 60.600 57.895 0.00 0.00 45.92 3.16
1787 1831 2.979197 GCTGCTGCTGTCCTGCAAG 61.979 63.158 8.53 0.00 45.92 4.01
1788 1832 2.981909 GCTGCTGCTGTCCTGCAA 60.982 61.111 8.53 0.00 45.92 4.08
1980 2025 5.411669 AGTCAGTTTCCTAAGGTAAATTGCG 59.588 40.000 0.00 0.00 0.00 4.85
2006 2051 2.093447 CGCTTCCCTACAGTGGAAATCT 60.093 50.000 0.00 0.00 41.20 2.40
2025 2070 4.749099 AGATGATGCAATCTCTACTTTCGC 59.251 41.667 0.00 0.00 45.81 4.70
2137 2182 5.467063 AGTGTTCGAAAATTCAGGAGAAGTC 59.533 40.000 0.00 0.00 37.14 3.01
2164 2209 4.491676 CCATCCTGACATTCTTGCAAAAG 58.508 43.478 0.00 0.00 0.00 2.27
2199 2244 8.138928 TCATCATCCTAGAAGAGAGAACAAAA 57.861 34.615 0.00 0.00 0.00 2.44
2263 2308 2.895865 CTGCTCTGCATGCCTCCG 60.896 66.667 16.68 2.00 38.13 4.63
2306 2351 3.124921 CGCCTGCGGGATTCGTTT 61.125 61.111 18.31 0.00 41.72 3.60
2327 2372 1.151668 CCACTTCTTCGTCTGCCTTG 58.848 55.000 0.00 0.00 0.00 3.61
2349 2394 4.020128 GGGTTGTACTTTCAGGAGAGATGT 60.020 45.833 0.00 0.00 0.00 3.06
2359 2404 3.456644 TCTGACAAGGGGTTGTACTTTCA 59.543 43.478 0.00 0.00 34.90 2.69
2380 2425 7.706607 GGCTAGTTTATGATGAATTTGGGTTTC 59.293 37.037 0.00 0.00 0.00 2.78
2460 2506 1.153745 CAGGTACAGCTCCTCGTGC 60.154 63.158 0.00 0.00 32.37 5.34
2497 2543 4.219999 GGCTGCCTCGAGCTCCTC 62.220 72.222 12.43 0.00 44.23 3.71
2615 2661 2.664851 TCGTGCTTTGCAGTCCCG 60.665 61.111 0.00 0.00 40.08 5.14
2673 2725 0.036577 CCAGCTTCCTCTGACACTGG 60.037 60.000 0.00 0.00 37.44 4.00
2712 2764 2.608016 CGACCATGGTATGATGACCGAG 60.608 54.545 19.80 0.00 42.99 4.63
2751 2803 2.281484 GCTTCGCAGGTGAACCCA 60.281 61.111 0.00 0.00 36.42 4.51
2881 2933 1.591863 GCCGCCTCGTGTATTCCTC 60.592 63.158 0.00 0.00 0.00 3.71
2885 2937 2.511600 GCTGCCGCCTCGTGTATT 60.512 61.111 0.00 0.00 0.00 1.89
2886 2938 3.723235 CTGCTGCCGCCTCGTGTAT 62.723 63.158 0.00 0.00 34.43 2.29
2934 2994 3.857665 TGAGCGTGAGTGATCGAAAATAC 59.142 43.478 0.00 0.00 0.00 1.89
2935 2995 3.857665 GTGAGCGTGAGTGATCGAAAATA 59.142 43.478 0.00 0.00 0.00 1.40
2936 2996 2.668457 GTGAGCGTGAGTGATCGAAAAT 59.332 45.455 0.00 0.00 0.00 1.82
2937 2997 2.058798 GTGAGCGTGAGTGATCGAAAA 58.941 47.619 0.00 0.00 0.00 2.29
2938 2998 1.668919 GGTGAGCGTGAGTGATCGAAA 60.669 52.381 0.00 0.00 0.00 3.46
2939 2999 0.109272 GGTGAGCGTGAGTGATCGAA 60.109 55.000 0.00 0.00 0.00 3.71
2940 3000 0.960861 AGGTGAGCGTGAGTGATCGA 60.961 55.000 0.00 0.00 0.00 3.59
2941 3001 0.799917 CAGGTGAGCGTGAGTGATCG 60.800 60.000 0.00 0.00 32.67 3.69
2942 3002 1.080995 GCAGGTGAGCGTGAGTGATC 61.081 60.000 0.00 0.00 32.67 2.92
2943 3003 1.079543 GCAGGTGAGCGTGAGTGAT 60.080 57.895 0.00 0.00 32.67 3.06
2944 3004 2.340078 GCAGGTGAGCGTGAGTGA 59.660 61.111 0.00 0.00 32.67 3.41
2945 3005 2.740055 GGCAGGTGAGCGTGAGTG 60.740 66.667 0.00 0.00 34.64 3.51
2946 3006 2.116983 ATTGGCAGGTGAGCGTGAGT 62.117 55.000 0.00 0.00 34.64 3.41
2947 3007 1.364626 GATTGGCAGGTGAGCGTGAG 61.365 60.000 0.00 0.00 34.64 3.51
2948 3008 1.375908 GATTGGCAGGTGAGCGTGA 60.376 57.895 0.00 0.00 34.64 4.35
2949 3009 2.743752 CGATTGGCAGGTGAGCGTG 61.744 63.158 0.00 0.00 34.64 5.34
2950 3010 2.434884 CGATTGGCAGGTGAGCGT 60.435 61.111 0.00 0.00 34.64 5.07
2951 3011 3.869272 GCGATTGGCAGGTGAGCG 61.869 66.667 0.00 0.00 42.87 5.03
2952 3012 3.869272 CGCGATTGGCAGGTGAGC 61.869 66.667 0.00 0.00 43.84 4.26
2953 3013 2.434884 ACGCGATTGGCAGGTGAG 60.435 61.111 15.93 0.00 43.84 3.51
2954 3014 2.520465 ATCACGCGATTGGCAGGTGA 62.520 55.000 15.93 2.20 43.18 4.02
2955 3015 2.108514 ATCACGCGATTGGCAGGTG 61.109 57.895 15.93 0.00 43.84 4.00
2956 3016 2.108514 CATCACGCGATTGGCAGGT 61.109 57.895 15.93 0.00 43.84 4.00
2957 3017 2.711311 CATCACGCGATTGGCAGG 59.289 61.111 15.93 0.00 43.84 4.85
2958 3018 2.023741 GCATCACGCGATTGGCAG 59.976 61.111 15.93 0.00 43.84 4.85
2959 3019 1.655885 ATTGCATCACGCGATTGGCA 61.656 50.000 15.93 14.74 42.54 4.92
2960 3020 0.931662 GATTGCATCACGCGATTGGC 60.932 55.000 15.93 11.99 45.36 4.52
2961 3021 0.317269 GGATTGCATCACGCGATTGG 60.317 55.000 15.93 0.00 45.36 3.16
2962 3022 0.377905 TGGATTGCATCACGCGATTG 59.622 50.000 15.93 8.30 45.36 2.67
2963 3023 1.265095 GATGGATTGCATCACGCGATT 59.735 47.619 15.93 0.00 45.36 3.34
2965 3025 1.159713 GGATGGATTGCATCACGCGA 61.160 55.000 15.93 0.00 46.97 5.87
2966 3026 1.280746 GGATGGATTGCATCACGCG 59.719 57.895 18.34 3.53 46.97 6.01
2967 3027 0.740149 TTGGATGGATTGCATCACGC 59.260 50.000 18.34 3.71 42.89 5.34
2968 3028 2.289820 CTCTTGGATGGATTGCATCACG 59.710 50.000 18.34 7.21 0.00 4.35
2969 3029 2.621998 CCTCTTGGATGGATTGCATCAC 59.378 50.000 18.34 9.36 34.57 3.06
2970 3030 2.510800 TCCTCTTGGATGGATTGCATCA 59.489 45.455 18.34 3.87 37.46 3.07
2971 3031 3.219176 TCCTCTTGGATGGATTGCATC 57.781 47.619 9.49 9.49 37.46 3.91
2983 3043 0.107017 AACATCGGGCATCCTCTTGG 60.107 55.000 0.00 0.00 0.00 3.61
2984 3044 1.019673 CAACATCGGGCATCCTCTTG 58.980 55.000 0.00 0.00 0.00 3.02
2985 3045 0.620556 ACAACATCGGGCATCCTCTT 59.379 50.000 0.00 0.00 0.00 2.85
2986 3046 0.107508 CACAACATCGGGCATCCTCT 60.108 55.000 0.00 0.00 0.00 3.69
2987 3047 1.718757 GCACAACATCGGGCATCCTC 61.719 60.000 0.00 0.00 0.00 3.71
2988 3048 1.750399 GCACAACATCGGGCATCCT 60.750 57.895 0.00 0.00 0.00 3.24
2989 3049 1.718757 GAGCACAACATCGGGCATCC 61.719 60.000 0.00 0.00 0.00 3.51
2990 3050 1.723870 GAGCACAACATCGGGCATC 59.276 57.895 0.00 0.00 0.00 3.91
2991 3051 2.108514 CGAGCACAACATCGGGCAT 61.109 57.895 0.00 0.00 35.33 4.40
2992 3052 2.741985 CGAGCACAACATCGGGCA 60.742 61.111 0.00 0.00 35.33 5.36
2993 3053 2.434185 TCGAGCACAACATCGGGC 60.434 61.111 0.00 0.00 39.38 6.13
2994 3054 2.456119 GCTCGAGCACAACATCGGG 61.456 63.158 31.91 0.00 42.35 5.14
2995 3055 2.456119 GGCTCGAGCACAACATCGG 61.456 63.158 36.27 0.00 44.36 4.18
2996 3056 2.792290 CGGCTCGAGCACAACATCG 61.792 63.158 36.27 24.57 44.36 3.84
2997 3057 1.446099 TCGGCTCGAGCACAACATC 60.446 57.895 36.27 17.49 44.36 3.06
2998 3058 1.738099 GTCGGCTCGAGCACAACAT 60.738 57.895 36.27 0.00 44.36 2.71
2999 3059 2.355837 GTCGGCTCGAGCACAACA 60.356 61.111 36.27 13.65 44.36 3.33
3000 3060 2.355837 TGTCGGCTCGAGCACAAC 60.356 61.111 36.27 28.19 44.36 3.32
3001 3061 2.355837 GTGTCGGCTCGAGCACAA 60.356 61.111 36.27 19.31 44.36 3.33
3002 3062 4.357947 GGTGTCGGCTCGAGCACA 62.358 66.667 36.27 29.03 44.36 4.57
3003 3063 4.357947 TGGTGTCGGCTCGAGCAC 62.358 66.667 36.27 26.88 44.36 4.40
3004 3064 4.357947 GTGGTGTCGGCTCGAGCA 62.358 66.667 36.27 16.70 44.36 4.26
3006 3066 4.778415 CGGTGGTGTCGGCTCGAG 62.778 72.222 8.45 8.45 36.23 4.04
3011 3071 4.501714 TATCGCGGTGGTGTCGGC 62.502 66.667 6.13 0.00 0.00 5.54
3012 3072 2.278596 CTATCGCGGTGGTGTCGG 60.279 66.667 6.13 0.00 0.00 4.79
3013 3073 2.071844 ATCCTATCGCGGTGGTGTCG 62.072 60.000 6.13 0.00 0.00 4.35
3014 3074 0.956633 TATCCTATCGCGGTGGTGTC 59.043 55.000 6.13 0.00 0.00 3.67
3015 3075 0.672342 GTATCCTATCGCGGTGGTGT 59.328 55.000 6.13 0.00 0.00 4.16
3016 3076 0.386858 CGTATCCTATCGCGGTGGTG 60.387 60.000 6.13 0.00 0.00 4.17
3017 3077 0.820891 ACGTATCCTATCGCGGTGGT 60.821 55.000 6.13 0.00 0.00 4.16
3018 3078 0.109873 GACGTATCCTATCGCGGTGG 60.110 60.000 6.13 0.00 0.00 4.61
3019 3079 0.589708 TGACGTATCCTATCGCGGTG 59.410 55.000 6.13 0.00 0.00 4.94
3020 3080 1.467734 GATGACGTATCCTATCGCGGT 59.532 52.381 6.13 0.00 0.00 5.68
3021 3081 1.738350 AGATGACGTATCCTATCGCGG 59.262 52.381 6.13 0.00 36.40 6.46
3022 3082 2.535137 CGAGATGACGTATCCTATCGCG 60.535 54.545 0.00 0.00 36.75 5.87
3023 3083 2.223066 CCGAGATGACGTATCCTATCGC 60.223 54.545 0.00 0.00 36.40 4.58
3024 3084 3.259902 TCCGAGATGACGTATCCTATCG 58.740 50.000 0.00 0.00 36.40 2.92
3025 3085 4.505808 TCTCCGAGATGACGTATCCTATC 58.494 47.826 0.00 0.00 36.40 2.08
3026 3086 4.020039 ACTCTCCGAGATGACGTATCCTAT 60.020 45.833 0.00 0.00 36.40 2.57
3027 3087 3.324268 ACTCTCCGAGATGACGTATCCTA 59.676 47.826 0.00 0.00 36.40 2.94
3028 3088 2.105134 ACTCTCCGAGATGACGTATCCT 59.895 50.000 0.00 0.00 36.40 3.24
3029 3089 2.496111 ACTCTCCGAGATGACGTATCC 58.504 52.381 0.00 0.00 36.40 2.59
3030 3090 4.377635 GCTAACTCTCCGAGATGACGTATC 60.378 50.000 0.00 0.00 35.97 2.24
3031 3091 3.499157 GCTAACTCTCCGAGATGACGTAT 59.501 47.826 0.00 0.00 33.32 3.06
3032 3092 2.871022 GCTAACTCTCCGAGATGACGTA 59.129 50.000 0.00 0.00 33.32 3.57
3033 3093 1.671845 GCTAACTCTCCGAGATGACGT 59.328 52.381 0.00 0.00 33.32 4.34
3034 3094 1.002251 GGCTAACTCTCCGAGATGACG 60.002 57.143 0.00 0.00 33.32 4.35
3035 3095 2.303175 AGGCTAACTCTCCGAGATGAC 58.697 52.381 0.00 0.00 33.32 3.06
3036 3096 2.690497 CAAGGCTAACTCTCCGAGATGA 59.310 50.000 0.00 0.00 33.32 2.92
3037 3097 2.801342 GCAAGGCTAACTCTCCGAGATG 60.801 54.545 0.00 0.00 33.32 2.90
3038 3098 1.410882 GCAAGGCTAACTCTCCGAGAT 59.589 52.381 0.00 0.00 33.32 2.75
3039 3099 0.818296 GCAAGGCTAACTCTCCGAGA 59.182 55.000 0.00 0.00 33.32 4.04
3040 3100 0.526524 CGCAAGGCTAACTCTCCGAG 60.527 60.000 0.00 0.00 35.52 4.63
3041 3101 1.248785 ACGCAAGGCTAACTCTCCGA 61.249 55.000 0.00 0.00 46.39 4.55
3042 3102 0.454600 TACGCAAGGCTAACTCTCCG 59.545 55.000 0.00 0.00 46.39 4.63
3043 3103 1.202428 CCTACGCAAGGCTAACTCTCC 60.202 57.143 0.00 0.00 46.39 3.71
3044 3104 1.749634 TCCTACGCAAGGCTAACTCTC 59.250 52.381 0.00 0.00 46.10 3.20
3045 3105 1.477295 GTCCTACGCAAGGCTAACTCT 59.523 52.381 0.00 0.00 46.10 3.24
3046 3106 1.477295 AGTCCTACGCAAGGCTAACTC 59.523 52.381 0.00 0.00 46.10 3.01
3047 3107 1.558233 AGTCCTACGCAAGGCTAACT 58.442 50.000 0.00 0.00 46.10 2.24
3048 3108 2.381725 AAGTCCTACGCAAGGCTAAC 57.618 50.000 0.00 0.00 46.10 2.34
3049 3109 2.614481 CCAAAGTCCTACGCAAGGCTAA 60.614 50.000 0.00 0.00 46.10 3.09
3050 3110 1.066430 CCAAAGTCCTACGCAAGGCTA 60.066 52.381 0.00 0.00 46.10 3.93
3051 3111 0.321653 CCAAAGTCCTACGCAAGGCT 60.322 55.000 0.00 0.00 46.10 4.58
3052 3112 1.305930 CCCAAAGTCCTACGCAAGGC 61.306 60.000 0.00 0.00 46.10 4.35
3055 3115 0.988832 ATCCCCAAAGTCCTACGCAA 59.011 50.000 0.00 0.00 0.00 4.85
3056 3116 0.251916 CATCCCCAAAGTCCTACGCA 59.748 55.000 0.00 0.00 0.00 5.24
3057 3117 0.539986 TCATCCCCAAAGTCCTACGC 59.460 55.000 0.00 0.00 0.00 4.42
3058 3118 1.473434 GCTCATCCCCAAAGTCCTACG 60.473 57.143 0.00 0.00 0.00 3.51
3059 3119 1.559682 TGCTCATCCCCAAAGTCCTAC 59.440 52.381 0.00 0.00 0.00 3.18
3060 3120 1.559682 GTGCTCATCCCCAAAGTCCTA 59.440 52.381 0.00 0.00 0.00 2.94
3061 3121 0.329596 GTGCTCATCCCCAAAGTCCT 59.670 55.000 0.00 0.00 0.00 3.85
3062 3122 0.329596 AGTGCTCATCCCCAAAGTCC 59.670 55.000 0.00 0.00 0.00 3.85
3063 3123 1.680249 GGAGTGCTCATCCCCAAAGTC 60.680 57.143 1.41 0.00 0.00 3.01
3064 3124 0.329596 GGAGTGCTCATCCCCAAAGT 59.670 55.000 1.41 0.00 0.00 2.66
3065 3125 3.181526 GGAGTGCTCATCCCCAAAG 57.818 57.895 1.41 0.00 0.00 2.77
3071 3131 1.406860 GGAGGAGGGAGTGCTCATCC 61.407 65.000 12.19 12.19 45.40 3.51
3072 3132 0.398381 AGGAGGAGGGAGTGCTCATC 60.398 60.000 1.41 0.00 45.40 2.92
3073 3133 0.398381 GAGGAGGAGGGAGTGCTCAT 60.398 60.000 1.41 0.00 45.40 2.90
3074 3134 1.000993 GAGGAGGAGGGAGTGCTCA 59.999 63.158 1.41 0.00 45.40 4.26
3075 3135 2.124693 CGAGGAGGAGGGAGTGCTC 61.125 68.421 0.00 0.00 42.88 4.26
3076 3136 2.043450 CGAGGAGGAGGGAGTGCT 60.043 66.667 0.00 0.00 0.00 4.40
3077 3137 2.363147 ACGAGGAGGAGGGAGTGC 60.363 66.667 0.00 0.00 0.00 4.40
3078 3138 2.716017 GCACGAGGAGGAGGGAGTG 61.716 68.421 0.00 0.00 0.00 3.51
3079 3139 2.363147 GCACGAGGAGGAGGGAGT 60.363 66.667 0.00 0.00 0.00 3.85
3080 3140 2.043450 AGCACGAGGAGGAGGGAG 60.043 66.667 0.00 0.00 0.00 4.30
3081 3141 2.043852 GAGCACGAGGAGGAGGGA 60.044 66.667 0.00 0.00 0.00 4.20
3082 3142 3.522731 CGAGCACGAGGAGGAGGG 61.523 72.222 0.00 0.00 42.66 4.30
3083 3143 3.522731 CCGAGCACGAGGAGGAGG 61.523 72.222 4.70 0.00 42.66 4.30
3084 3144 3.522731 CCCGAGCACGAGGAGGAG 61.523 72.222 4.70 0.00 42.66 3.69
3089 3149 4.899239 GATGGCCCGAGCACGAGG 62.899 72.222 4.70 5.91 42.56 4.63
3090 3150 3.451556 ATGATGGCCCGAGCACGAG 62.452 63.158 4.70 0.00 42.56 4.18
3091 3151 3.469970 ATGATGGCCCGAGCACGA 61.470 61.111 4.70 0.00 42.56 4.35
3092 3152 3.274586 CATGATGGCCCGAGCACG 61.275 66.667 0.00 0.00 42.56 5.34
3093 3153 1.315257 AAACATGATGGCCCGAGCAC 61.315 55.000 0.00 0.00 42.56 4.40
3094 3154 1.001020 AAACATGATGGCCCGAGCA 60.001 52.632 0.00 0.00 42.56 4.26
3095 3155 1.434696 CAAACATGATGGCCCGAGC 59.565 57.895 0.00 0.00 38.76 5.03
3096 3156 1.434696 GCAAACATGATGGCCCGAG 59.565 57.895 0.00 0.00 0.00 4.63
3097 3157 2.405805 CGCAAACATGATGGCCCGA 61.406 57.895 0.00 0.00 0.00 5.14
3098 3158 2.102749 CGCAAACATGATGGCCCG 59.897 61.111 0.00 0.00 0.00 6.13
3099 3159 2.202783 GCGCAAACATGATGGCCC 60.203 61.111 0.30 0.00 0.00 5.80
3100 3160 2.202783 GGCGCAAACATGATGGCC 60.203 61.111 10.83 9.39 0.00 5.36
3101 3161 1.517694 CAGGCGCAAACATGATGGC 60.518 57.895 10.83 0.00 0.00 4.40
3102 3162 1.517694 GCAGGCGCAAACATGATGG 60.518 57.895 10.83 0.00 38.36 3.51
3103 3163 0.734309 TAGCAGGCGCAAACATGATG 59.266 50.000 10.83 0.00 42.27 3.07
3104 3164 1.019673 CTAGCAGGCGCAAACATGAT 58.980 50.000 10.83 0.39 42.27 2.45
3105 3165 0.321564 ACTAGCAGGCGCAAACATGA 60.322 50.000 10.83 0.00 42.27 3.07
3106 3166 0.179181 CACTAGCAGGCGCAAACATG 60.179 55.000 10.83 0.11 42.27 3.21
3107 3167 0.606401 ACACTAGCAGGCGCAAACAT 60.606 50.000 10.83 0.00 42.27 2.71
3108 3168 0.034198 TACACTAGCAGGCGCAAACA 59.966 50.000 10.83 0.00 42.27 2.83
3109 3169 1.062587 CATACACTAGCAGGCGCAAAC 59.937 52.381 10.83 0.00 42.27 2.93
3110 3170 1.338674 ACATACACTAGCAGGCGCAAA 60.339 47.619 10.83 0.00 42.27 3.68
3111 3171 0.249120 ACATACACTAGCAGGCGCAA 59.751 50.000 10.83 0.00 42.27 4.85
3112 3172 1.107945 TACATACACTAGCAGGCGCA 58.892 50.000 10.83 0.00 42.27 6.09
3113 3173 2.218953 TTACATACACTAGCAGGCGC 57.781 50.000 0.00 0.00 38.99 6.53
3114 3174 3.490896 CACATTACATACACTAGCAGGCG 59.509 47.826 0.00 0.00 0.00 5.52
3115 3175 4.693283 TCACATTACATACACTAGCAGGC 58.307 43.478 0.00 0.00 0.00 4.85
3116 3176 5.163405 ACCTCACATTACATACACTAGCAGG 60.163 44.000 0.00 0.00 0.00 4.85
3117 3177 5.907207 ACCTCACATTACATACACTAGCAG 58.093 41.667 0.00 0.00 0.00 4.24
3118 3178 5.932619 ACCTCACATTACATACACTAGCA 57.067 39.130 0.00 0.00 0.00 3.49
3119 3179 7.887381 AGATACCTCACATTACATACACTAGC 58.113 38.462 0.00 0.00 0.00 3.42
3127 3187 7.875041 GCACAGATTAGATACCTCACATTACAT 59.125 37.037 0.00 0.00 0.00 2.29
3128 3188 7.069950 AGCACAGATTAGATACCTCACATTACA 59.930 37.037 0.00 0.00 0.00 2.41
3129 3189 7.437748 AGCACAGATTAGATACCTCACATTAC 58.562 38.462 0.00 0.00 0.00 1.89
3130 3190 7.603180 AGCACAGATTAGATACCTCACATTA 57.397 36.000 0.00 0.00 0.00 1.90
3131 3191 6.491714 AGCACAGATTAGATACCTCACATT 57.508 37.500 0.00 0.00 0.00 2.71
3132 3192 7.609960 CATAGCACAGATTAGATACCTCACAT 58.390 38.462 0.00 0.00 0.00 3.21
3133 3193 6.517362 GCATAGCACAGATTAGATACCTCACA 60.517 42.308 0.00 0.00 0.00 3.58
3134 3194 5.866633 GCATAGCACAGATTAGATACCTCAC 59.133 44.000 0.00 0.00 0.00 3.51
3135 3195 5.777223 AGCATAGCACAGATTAGATACCTCA 59.223 40.000 0.00 0.00 0.00 3.86
3136 3196 6.279513 AGCATAGCACAGATTAGATACCTC 57.720 41.667 0.00 0.00 0.00 3.85
3137 3197 6.496565 AGAAGCATAGCACAGATTAGATACCT 59.503 38.462 0.00 0.00 0.00 3.08
3138 3198 6.589523 CAGAAGCATAGCACAGATTAGATACC 59.410 42.308 0.00 0.00 0.00 2.73
3139 3199 6.090628 GCAGAAGCATAGCACAGATTAGATAC 59.909 42.308 0.00 0.00 41.58 2.24
3140 3200 6.014755 AGCAGAAGCATAGCACAGATTAGATA 60.015 38.462 0.00 0.00 45.49 1.98
3141 3201 4.996122 GCAGAAGCATAGCACAGATTAGAT 59.004 41.667 0.00 0.00 41.58 1.98
3142 3202 4.100653 AGCAGAAGCATAGCACAGATTAGA 59.899 41.667 0.00 0.00 45.49 2.10
3143 3203 4.378774 AGCAGAAGCATAGCACAGATTAG 58.621 43.478 0.00 0.00 45.49 1.73
3144 3204 4.375272 GAGCAGAAGCATAGCACAGATTA 58.625 43.478 0.00 0.00 45.49 1.75
3145 3205 3.204526 GAGCAGAAGCATAGCACAGATT 58.795 45.455 0.00 0.00 45.49 2.40
3146 3206 2.485124 GGAGCAGAAGCATAGCACAGAT 60.485 50.000 0.00 0.00 45.49 2.90
3147 3207 1.134580 GGAGCAGAAGCATAGCACAGA 60.135 52.381 0.00 0.00 45.49 3.41
3148 3208 1.297664 GGAGCAGAAGCATAGCACAG 58.702 55.000 0.00 0.00 45.49 3.66
3149 3209 0.614812 TGGAGCAGAAGCATAGCACA 59.385 50.000 0.00 0.00 45.49 4.57
3150 3210 1.872313 GATGGAGCAGAAGCATAGCAC 59.128 52.381 0.00 0.00 45.49 4.40
3151 3211 1.767088 AGATGGAGCAGAAGCATAGCA 59.233 47.619 0.00 0.00 45.49 3.49
3152 3212 2.547299 AGATGGAGCAGAAGCATAGC 57.453 50.000 0.00 0.00 45.49 2.97
3153 3213 4.157472 TCGATAGATGGAGCAGAAGCATAG 59.843 45.833 0.00 0.00 42.20 2.23
3154 3214 4.082125 TCGATAGATGGAGCAGAAGCATA 58.918 43.478 0.00 0.00 42.20 3.14
3155 3215 2.896044 TCGATAGATGGAGCAGAAGCAT 59.104 45.455 0.00 0.00 42.20 3.79
3156 3216 2.310538 TCGATAGATGGAGCAGAAGCA 58.689 47.619 0.00 0.00 42.20 3.91
3170 3230 7.304919 AGCTTGCATATCATTTCATCGATAG 57.695 36.000 0.00 0.00 0.00 2.08
3171 3231 7.677454 AAGCTTGCATATCATTTCATCGATA 57.323 32.000 0.00 0.00 0.00 2.92
3172 3232 6.570672 AAGCTTGCATATCATTTCATCGAT 57.429 33.333 0.00 0.00 0.00 3.59
3173 3233 6.203647 CAAAGCTTGCATATCATTTCATCGA 58.796 36.000 0.00 0.00 0.00 3.59
3174 3234 6.434181 CAAAGCTTGCATATCATTTCATCG 57.566 37.500 0.00 0.00 0.00 3.84
3189 3249 2.456942 TCGCGAATATGCAAAGCTTG 57.543 45.000 6.20 0.00 34.15 4.01
3190 3250 3.485947 TTTCGCGAATATGCAAAGCTT 57.514 38.095 24.05 0.00 34.15 3.74
3191 3251 3.485947 TTTTCGCGAATATGCAAAGCT 57.514 38.095 24.05 0.00 34.15 3.74
3209 3269 4.987912 CACGCACCAGACCATTTTATTTTT 59.012 37.500 0.00 0.00 0.00 1.94
3210 3270 4.555262 CACGCACCAGACCATTTTATTTT 58.445 39.130 0.00 0.00 0.00 1.82
3211 3271 3.056891 CCACGCACCAGACCATTTTATTT 60.057 43.478 0.00 0.00 0.00 1.40
3212 3272 2.491693 CCACGCACCAGACCATTTTATT 59.508 45.455 0.00 0.00 0.00 1.40
3213 3273 2.091541 CCACGCACCAGACCATTTTAT 58.908 47.619 0.00 0.00 0.00 1.40
3214 3274 1.202830 ACCACGCACCAGACCATTTTA 60.203 47.619 0.00 0.00 0.00 1.52
3215 3275 0.467290 ACCACGCACCAGACCATTTT 60.467 50.000 0.00 0.00 0.00 1.82
3216 3276 0.398696 TACCACGCACCAGACCATTT 59.601 50.000 0.00 0.00 0.00 2.32
3217 3277 0.036388 CTACCACGCACCAGACCATT 60.036 55.000 0.00 0.00 0.00 3.16
3218 3278 1.192146 ACTACCACGCACCAGACCAT 61.192 55.000 0.00 0.00 0.00 3.55
3219 3279 1.835267 ACTACCACGCACCAGACCA 60.835 57.895 0.00 0.00 0.00 4.02
3220 3280 1.374252 CACTACCACGCACCAGACC 60.374 63.158 0.00 0.00 0.00 3.85
3221 3281 1.374252 CCACTACCACGCACCAGAC 60.374 63.158 0.00 0.00 0.00 3.51
3222 3282 1.404479 AACCACTACCACGCACCAGA 61.404 55.000 0.00 0.00 0.00 3.86
3223 3283 0.534203 AAACCACTACCACGCACCAG 60.534 55.000 0.00 0.00 0.00 4.00
3224 3284 0.757512 TAAACCACTACCACGCACCA 59.242 50.000 0.00 0.00 0.00 4.17
3225 3285 1.532437 GTTAAACCACTACCACGCACC 59.468 52.381 0.00 0.00 0.00 5.01
3226 3286 2.032636 GTGTTAAACCACTACCACGCAC 60.033 50.000 0.00 0.00 32.50 5.34
3227 3287 2.211806 GTGTTAAACCACTACCACGCA 58.788 47.619 0.00 0.00 32.50 5.24
3228 3288 2.211806 TGTGTTAAACCACTACCACGC 58.788 47.619 0.00 0.00 36.30 5.34
3229 3289 6.730960 AATATGTGTTAAACCACTACCACG 57.269 37.500 0.00 0.00 36.30 4.94
3230 3290 9.401873 GAAAAATATGTGTTAAACCACTACCAC 57.598 33.333 0.00 0.00 36.30 4.16
3231 3291 8.291032 CGAAAAATATGTGTTAAACCACTACCA 58.709 33.333 0.00 0.00 36.30 3.25
3232 3292 8.505625 TCGAAAAATATGTGTTAAACCACTACC 58.494 33.333 0.00 0.00 36.30 3.18
3233 3293 9.881529 TTCGAAAAATATGTGTTAAACCACTAC 57.118 29.630 0.00 0.00 36.30 2.73
3235 3295 9.804758 TTTTCGAAAAATATGTGTTAAACCACT 57.195 25.926 20.56 0.00 36.30 4.00
3237 3297 9.250624 CCTTTTCGAAAAATATGTGTTAAACCA 57.749 29.630 22.67 0.00 0.00 3.67
3238 3298 8.705134 CCCTTTTCGAAAAATATGTGTTAAACC 58.295 33.333 22.67 0.00 0.00 3.27
3239 3299 8.705134 CCCCTTTTCGAAAAATATGTGTTAAAC 58.295 33.333 22.67 0.00 0.00 2.01
3240 3300 7.385478 GCCCCTTTTCGAAAAATATGTGTTAAA 59.615 33.333 22.67 0.00 0.00 1.52
3241 3301 6.869388 GCCCCTTTTCGAAAAATATGTGTTAA 59.131 34.615 22.67 0.00 0.00 2.01
3242 3302 6.391537 GCCCCTTTTCGAAAAATATGTGTTA 58.608 36.000 22.67 0.00 0.00 2.41
3243 3303 5.234752 GCCCCTTTTCGAAAAATATGTGTT 58.765 37.500 22.67 0.00 0.00 3.32
3244 3304 4.617298 CGCCCCTTTTCGAAAAATATGTGT 60.617 41.667 22.67 0.00 0.00 3.72
3245 3305 3.857093 CGCCCCTTTTCGAAAAATATGTG 59.143 43.478 22.67 14.09 0.00 3.21
3246 3306 3.674955 GCGCCCCTTTTCGAAAAATATGT 60.675 43.478 22.67 0.00 0.00 2.29
3247 3307 2.857748 GCGCCCCTTTTCGAAAAATATG 59.142 45.455 22.67 11.81 0.00 1.78
3250 3310 0.966179 AGCGCCCCTTTTCGAAAAAT 59.034 45.000 22.67 2.49 0.00 1.82
3284 3344 2.028876 GGCCGGGTGTAATGCTTAAAT 58.971 47.619 2.18 0.00 0.00 1.40
3327 3387 4.385825 TGTGCGAGAAGACTTTATTTGGT 58.614 39.130 0.00 0.00 0.00 3.67
3379 3439 8.936070 TGCGTTATACATACTCTACATGTTTT 57.064 30.769 2.30 0.00 37.74 2.43
3404 3464 4.014406 GGATTGACCCACCTTCGTTTTAT 58.986 43.478 0.00 0.00 0.00 1.40
3420 3480 3.136992 TGGCAGCATGATCTTAGGATTGA 59.863 43.478 0.00 0.00 39.69 2.57
3453 3513 1.065998 TGCGGCGAGGGTTACTTTTAT 60.066 47.619 12.98 0.00 0.00 1.40
3563 3623 8.709308 AGTACTTCTCTGATGCAGGTTATTTAT 58.291 33.333 0.00 0.00 31.51 1.40
3622 3682 1.199097 CCGTTATTTGGTCGCTTTGCT 59.801 47.619 0.00 0.00 0.00 3.91
3623 3683 1.613270 CCGTTATTTGGTCGCTTTGC 58.387 50.000 0.00 0.00 0.00 3.68
3657 3717 8.647796 TGATCACAGGTTTAGAACTCTTCTTAA 58.352 33.333 0.00 0.00 41.14 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.