Multiple sequence alignment - TraesCS1A01G205700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G205700 chr1A 100.000 4102 0 0 1 4102 368357413 368361514 0.000000e+00 7576
1 TraesCS1A01G205700 chr1A 95.181 83 3 1 442 524 493005059 493004978 3.330000e-26 130
2 TraesCS1A01G205700 chr1B 89.882 1947 102 41 2228 4102 396592278 396594201 0.000000e+00 2416
3 TraesCS1A01G205700 chr1B 90.064 1087 69 17 554 1608 396590364 396591443 0.000000e+00 1373
4 TraesCS1A01G205700 chr1B 96.134 388 15 0 1648 2035 396591455 396591842 5.780000e-178 634
5 TraesCS1A01G205700 chr1D 93.364 1507 60 18 560 2035 295144247 295145744 0.000000e+00 2193
6 TraesCS1A01G205700 chr1D 91.101 1472 63 24 2228 3641 295146316 295147777 0.000000e+00 1930
7 TraesCS1A01G205700 chr1D 94.692 471 16 2 3640 4102 295183552 295184021 0.000000e+00 723
8 TraesCS1A01G205700 chr3B 90.531 433 38 3 11 441 795329137 795329568 1.650000e-158 569
9 TraesCS1A01G205700 chr6A 95.181 83 3 1 442 524 502340672 502340591 3.330000e-26 130
10 TraesCS1A01G205700 chr7D 93.902 82 4 1 443 524 549124124 549124044 5.570000e-24 122
11 TraesCS1A01G205700 chr6B 91.111 90 7 1 435 524 695058043 695057955 2.000000e-23 121
12 TraesCS1A01G205700 chr2B 91.566 83 5 2 442 524 775737771 775737691 3.350000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G205700 chr1A 368357413 368361514 4101 False 7576.000000 7576 100.000000 1 4102 1 chr1A.!!$F1 4101
1 TraesCS1A01G205700 chr1B 396590364 396594201 3837 False 1474.333333 2416 92.026667 554 4102 3 chr1B.!!$F1 3548
2 TraesCS1A01G205700 chr1D 295144247 295147777 3530 False 2061.500000 2193 92.232500 560 3641 2 chr1D.!!$F2 3081

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
341 342 0.030908 CTCTCCCGACCAGATAACGC 59.969 60.000 0.00 0.00 0.00 4.84 F
541 542 0.037790 GGAAAGCTCAGCTCACGTCT 60.038 55.000 0.00 0.00 38.25 4.18 F
980 1004 0.038159 CGGGTCCTTGTGTCTGTCTC 60.038 60.000 0.00 0.00 0.00 3.36 F
1478 1523 0.673333 AGATTCGCATGCGGTTGTCA 60.673 50.000 37.18 16.54 40.25 3.58 F
2112 2304 1.009078 TGCGATGTTAGCTGCATGAC 58.991 50.000 9.83 0.00 35.28 3.06 F
2114 2306 1.267732 GCGATGTTAGCTGCATGACAC 60.268 52.381 9.83 0.00 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2145 2337 0.184451 CATGCAGCTCCCCCACTAAT 59.816 55.000 0.0 0.0 0.00 1.73 R
2153 2345 0.250640 CATAGACCCATGCAGCTCCC 60.251 60.000 0.0 0.0 0.00 4.30 R
2154 2346 0.471617 ACATAGACCCATGCAGCTCC 59.528 55.000 0.0 0.0 0.00 4.70 R
3057 3625 1.416401 TCCGTCAGCACCTTCTTTCTT 59.584 47.619 0.0 0.0 0.00 2.52 R
3071 3639 2.017138 TTGCATAAGCGAATCCGTCA 57.983 45.000 0.0 0.0 46.23 4.35 R
3991 4582 2.032528 CGTGACTGCATGGGTGGT 59.967 61.111 0.0 0.0 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.281102 ACATACGGGGCATACGGA 57.719 55.556 0.00 0.00 35.23 4.69
18 19 2.518772 ACATACGGGGCATACGGAA 58.481 52.632 0.00 0.00 35.23 4.30
19 20 0.391597 ACATACGGGGCATACGGAAG 59.608 55.000 0.00 0.00 35.23 3.46
20 21 0.949105 CATACGGGGCATACGGAAGC 60.949 60.000 0.00 0.00 35.23 3.86
21 22 1.404479 ATACGGGGCATACGGAAGCA 61.404 55.000 0.00 0.00 35.23 3.91
22 23 2.023414 TACGGGGCATACGGAAGCAG 62.023 60.000 0.00 0.00 35.23 4.24
23 24 2.203209 GGGGCATACGGAAGCAGG 60.203 66.667 0.00 0.00 0.00 4.85
24 25 2.203209 GGGCATACGGAAGCAGGG 60.203 66.667 0.00 0.00 0.00 4.45
25 26 2.203209 GGCATACGGAAGCAGGGG 60.203 66.667 0.00 0.00 0.00 4.79
26 27 2.742116 GGCATACGGAAGCAGGGGA 61.742 63.158 0.00 0.00 0.00 4.81
27 28 1.227674 GCATACGGAAGCAGGGGAG 60.228 63.158 0.00 0.00 0.00 4.30
28 29 1.227674 CATACGGAAGCAGGGGAGC 60.228 63.158 0.00 0.00 0.00 4.70
29 30 1.689233 ATACGGAAGCAGGGGAGCA 60.689 57.895 0.00 0.00 36.85 4.26
30 31 1.690219 ATACGGAAGCAGGGGAGCAG 61.690 60.000 0.00 0.00 36.85 4.24
31 32 4.479993 CGGAAGCAGGGGAGCAGG 62.480 72.222 0.00 0.00 36.85 4.85
32 33 4.811364 GGAAGCAGGGGAGCAGGC 62.811 72.222 0.00 0.00 36.85 4.85
33 34 4.811364 GAAGCAGGGGAGCAGGCC 62.811 72.222 0.00 0.00 36.85 5.19
91 92 3.807538 CTGACGCATGCTGGGCAC 61.808 66.667 17.13 1.30 43.04 5.01
108 109 2.100797 CGGCGTACGTCATCGGAA 59.899 61.111 21.20 0.00 41.85 4.30
109 110 1.937846 CGGCGTACGTCATCGGAAG 60.938 63.158 21.20 0.00 41.85 3.46
110 111 1.588139 GGCGTACGTCATCGGAAGG 60.588 63.158 16.32 0.00 41.85 3.46
111 112 2.228914 GCGTACGTCATCGGAAGGC 61.229 63.158 17.90 0.00 41.85 4.35
112 113 1.937846 CGTACGTCATCGGAAGGCG 60.938 63.158 7.22 5.62 41.85 5.52
113 114 1.588139 GTACGTCATCGGAAGGCGG 60.588 63.158 12.03 0.00 41.85 6.13
114 115 3.420214 TACGTCATCGGAAGGCGGC 62.420 63.158 12.03 0.00 41.85 6.53
215 216 3.431725 GGCGTTGCCCGAAAGAGG 61.432 66.667 0.00 0.00 44.06 3.69
216 217 2.358247 GCGTTGCCCGAAAGAGGA 60.358 61.111 0.00 0.00 39.56 3.71
217 218 1.964373 GCGTTGCCCGAAAGAGGAA 60.964 57.895 0.00 0.00 39.56 3.36
218 219 1.866925 CGTTGCCCGAAAGAGGAAC 59.133 57.895 0.00 0.00 39.56 3.62
219 220 1.866925 GTTGCCCGAAAGAGGAACG 59.133 57.895 0.00 0.00 0.00 3.95
220 221 1.302192 TTGCCCGAAAGAGGAACGG 60.302 57.895 0.00 0.00 45.24 4.44
221 222 3.125573 GCCCGAAAGAGGAACGGC 61.126 66.667 0.00 0.00 44.45 5.68
222 223 2.813908 CCCGAAAGAGGAACGGCG 60.814 66.667 4.80 4.80 44.45 6.46
223 224 2.048503 CCGAAAGAGGAACGGCGT 60.049 61.111 6.77 6.77 40.19 5.68
224 225 2.380410 CCGAAAGAGGAACGGCGTG 61.380 63.158 15.70 0.00 40.19 5.34
225 226 2.380410 CGAAAGAGGAACGGCGTGG 61.380 63.158 15.70 0.00 0.00 4.94
226 227 2.668550 AAAGAGGAACGGCGTGGC 60.669 61.111 15.70 9.19 0.00 5.01
250 251 4.069232 CGTCGCAGGAGGAGGCAA 62.069 66.667 0.00 0.00 0.00 4.52
251 252 2.125350 GTCGCAGGAGGAGGCAAG 60.125 66.667 0.00 0.00 0.00 4.01
252 253 3.393970 TCGCAGGAGGAGGCAAGG 61.394 66.667 0.00 0.00 0.00 3.61
255 256 4.479993 CAGGAGGAGGCAAGGCGG 62.480 72.222 0.00 0.00 0.00 6.13
269 270 4.162690 GCGGCAGTGGGAGGGTAG 62.163 72.222 0.00 0.00 0.00 3.18
270 271 2.683933 CGGCAGTGGGAGGGTAGT 60.684 66.667 0.00 0.00 0.00 2.73
271 272 2.291043 CGGCAGTGGGAGGGTAGTT 61.291 63.158 0.00 0.00 0.00 2.24
272 273 1.299976 GGCAGTGGGAGGGTAGTTG 59.700 63.158 0.00 0.00 0.00 3.16
273 274 1.198759 GGCAGTGGGAGGGTAGTTGA 61.199 60.000 0.00 0.00 0.00 3.18
274 275 0.250513 GCAGTGGGAGGGTAGTTGAG 59.749 60.000 0.00 0.00 0.00 3.02
275 276 1.645710 CAGTGGGAGGGTAGTTGAGT 58.354 55.000 0.00 0.00 0.00 3.41
276 277 1.276421 CAGTGGGAGGGTAGTTGAGTG 59.724 57.143 0.00 0.00 0.00 3.51
277 278 0.613777 GTGGGAGGGTAGTTGAGTGG 59.386 60.000 0.00 0.00 0.00 4.00
278 279 0.490017 TGGGAGGGTAGTTGAGTGGA 59.510 55.000 0.00 0.00 0.00 4.02
279 280 1.080498 TGGGAGGGTAGTTGAGTGGAT 59.920 52.381 0.00 0.00 0.00 3.41
280 281 2.316677 TGGGAGGGTAGTTGAGTGGATA 59.683 50.000 0.00 0.00 0.00 2.59
281 282 3.246203 TGGGAGGGTAGTTGAGTGGATAA 60.246 47.826 0.00 0.00 0.00 1.75
282 283 3.388350 GGGAGGGTAGTTGAGTGGATAAG 59.612 52.174 0.00 0.00 0.00 1.73
283 284 3.388350 GGAGGGTAGTTGAGTGGATAAGG 59.612 52.174 0.00 0.00 0.00 2.69
284 285 4.287552 GAGGGTAGTTGAGTGGATAAGGA 58.712 47.826 0.00 0.00 0.00 3.36
285 286 4.695606 AGGGTAGTTGAGTGGATAAGGAA 58.304 43.478 0.00 0.00 0.00 3.36
286 287 4.470304 AGGGTAGTTGAGTGGATAAGGAAC 59.530 45.833 0.00 0.00 0.00 3.62
287 288 4.224370 GGGTAGTTGAGTGGATAAGGAACA 59.776 45.833 0.00 0.00 0.00 3.18
288 289 5.176592 GGTAGTTGAGTGGATAAGGAACAC 58.823 45.833 0.00 0.00 35.43 3.32
289 290 3.926616 AGTTGAGTGGATAAGGAACACG 58.073 45.455 0.00 0.00 39.95 4.49
290 291 3.576982 AGTTGAGTGGATAAGGAACACGA 59.423 43.478 0.00 0.00 39.95 4.35
291 292 3.587797 TGAGTGGATAAGGAACACGAC 57.412 47.619 0.00 0.00 39.95 4.34
292 293 2.094906 TGAGTGGATAAGGAACACGACG 60.095 50.000 0.00 0.00 39.95 5.12
293 294 1.891150 AGTGGATAAGGAACACGACGT 59.109 47.619 0.00 0.00 39.95 4.34
294 295 1.990563 GTGGATAAGGAACACGACGTG 59.009 52.381 25.72 25.72 39.75 4.49
296 297 2.257034 GGATAAGGAACACGACGTGTC 58.743 52.381 31.85 23.28 46.79 3.67
297 298 2.094854 GGATAAGGAACACGACGTGTCT 60.095 50.000 31.85 22.66 46.79 3.41
298 299 3.127548 GGATAAGGAACACGACGTGTCTA 59.872 47.826 31.85 20.26 46.79 2.59
299 300 2.412421 AAGGAACACGACGTGTCTAC 57.588 50.000 31.85 23.31 46.79 2.59
300 301 0.595095 AGGAACACGACGTGTCTACC 59.405 55.000 31.85 29.67 46.79 3.18
301 302 0.387750 GGAACACGACGTGTCTACCC 60.388 60.000 31.85 24.20 46.79 3.69
302 303 0.387750 GAACACGACGTGTCTACCCC 60.388 60.000 31.85 14.02 46.79 4.95
303 304 2.133742 AACACGACGTGTCTACCCCG 62.134 60.000 31.85 4.35 46.79 5.73
304 305 3.058160 ACGACGTGTCTACCCCGG 61.058 66.667 0.00 0.00 0.00 5.73
305 306 3.818787 CGACGTGTCTACCCCGGG 61.819 72.222 15.80 15.80 0.00 5.73
306 307 2.677875 GACGTGTCTACCCCGGGT 60.678 66.667 21.85 15.24 40.16 5.28
307 308 2.993264 ACGTGTCTACCCCGGGTG 60.993 66.667 21.85 13.82 36.19 4.61
308 309 2.677524 CGTGTCTACCCCGGGTGA 60.678 66.667 21.85 11.94 36.19 4.02
309 310 2.707849 CGTGTCTACCCCGGGTGAG 61.708 68.421 21.85 16.18 36.19 3.51
310 311 2.682494 TGTCTACCCCGGGTGAGC 60.682 66.667 21.85 12.12 36.19 4.26
311 312 3.834799 GTCTACCCCGGGTGAGCG 61.835 72.222 21.85 5.85 36.19 5.03
312 313 4.051167 TCTACCCCGGGTGAGCGA 62.051 66.667 21.85 7.43 36.19 4.93
313 314 2.838225 CTACCCCGGGTGAGCGAT 60.838 66.667 21.85 0.00 36.19 4.58
314 315 2.836360 TACCCCGGGTGAGCGATC 60.836 66.667 21.85 0.00 36.19 3.69
328 329 2.384203 CGATCCGCAAAACTCTCCC 58.616 57.895 0.00 0.00 0.00 4.30
329 330 1.421410 CGATCCGCAAAACTCTCCCG 61.421 60.000 0.00 0.00 0.00 5.14
330 331 0.108329 GATCCGCAAAACTCTCCCGA 60.108 55.000 0.00 0.00 0.00 5.14
331 332 0.391263 ATCCGCAAAACTCTCCCGAC 60.391 55.000 0.00 0.00 0.00 4.79
332 333 2.033194 CCGCAAAACTCTCCCGACC 61.033 63.158 0.00 0.00 0.00 4.79
333 334 1.301401 CGCAAAACTCTCCCGACCA 60.301 57.895 0.00 0.00 0.00 4.02
334 335 1.291877 CGCAAAACTCTCCCGACCAG 61.292 60.000 0.00 0.00 0.00 4.00
335 336 0.034896 GCAAAACTCTCCCGACCAGA 59.965 55.000 0.00 0.00 0.00 3.86
336 337 1.339151 GCAAAACTCTCCCGACCAGAT 60.339 52.381 0.00 0.00 0.00 2.90
337 338 2.093658 GCAAAACTCTCCCGACCAGATA 60.094 50.000 0.00 0.00 0.00 1.98
338 339 3.618997 GCAAAACTCTCCCGACCAGATAA 60.619 47.826 0.00 0.00 0.00 1.75
339 340 3.889520 AAACTCTCCCGACCAGATAAC 57.110 47.619 0.00 0.00 0.00 1.89
340 341 1.390565 ACTCTCCCGACCAGATAACG 58.609 55.000 0.00 0.00 0.00 3.18
341 342 0.030908 CTCTCCCGACCAGATAACGC 59.969 60.000 0.00 0.00 0.00 4.84
342 343 1.067582 CTCCCGACCAGATAACGCC 59.932 63.158 0.00 0.00 0.00 5.68
343 344 1.380785 TCCCGACCAGATAACGCCT 60.381 57.895 0.00 0.00 0.00 5.52
344 345 1.227263 CCCGACCAGATAACGCCTG 60.227 63.158 0.00 0.00 0.00 4.85
348 349 3.813596 CCAGATAACGCCTGGCAC 58.186 61.111 20.29 4.25 43.93 5.01
349 350 1.221840 CCAGATAACGCCTGGCACT 59.778 57.895 20.29 7.13 43.93 4.40
350 351 1.091771 CCAGATAACGCCTGGCACTG 61.092 60.000 20.29 16.93 43.93 3.66
351 352 1.450312 AGATAACGCCTGGCACTGC 60.450 57.895 20.29 3.49 0.00 4.40
363 364 4.508128 CACTGCGGGCCGTACGAT 62.508 66.667 28.82 6.32 0.00 3.73
364 365 2.829914 ACTGCGGGCCGTACGATA 60.830 61.111 28.82 6.39 0.00 2.92
365 366 2.354305 CTGCGGGCCGTACGATAC 60.354 66.667 28.82 9.29 0.00 2.24
366 367 3.128632 CTGCGGGCCGTACGATACA 62.129 63.158 28.82 13.76 0.00 2.29
367 368 2.656328 GCGGGCCGTACGATACAC 60.656 66.667 28.82 5.94 0.00 2.90
368 369 2.800053 CGGGCCGTACGATACACA 59.200 61.111 19.97 0.00 0.00 3.72
369 370 1.361271 CGGGCCGTACGATACACAT 59.639 57.895 19.97 0.00 0.00 3.21
370 371 0.937699 CGGGCCGTACGATACACATG 60.938 60.000 19.97 0.00 0.00 3.21
371 372 0.103572 GGGCCGTACGATACACATGT 59.896 55.000 18.76 0.00 0.00 3.21
372 373 1.337703 GGGCCGTACGATACACATGTA 59.662 52.381 18.76 0.00 34.67 2.29
373 374 2.388121 GGCCGTACGATACACATGTAC 58.612 52.381 18.76 0.00 36.09 2.90
374 375 2.388121 GCCGTACGATACACATGTACC 58.612 52.381 18.76 0.00 36.06 3.34
375 376 2.642995 CCGTACGATACACATGTACCG 58.357 52.381 18.76 4.22 42.96 4.02
376 377 2.287644 CCGTACGATACACATGTACCGA 59.712 50.000 18.76 0.00 39.83 4.69
377 378 3.538780 CGTACGATACACATGTACCGAG 58.461 50.000 12.70 0.46 39.83 4.63
378 379 2.486951 ACGATACACATGTACCGAGC 57.513 50.000 12.70 0.00 39.83 5.03
379 380 1.268386 ACGATACACATGTACCGAGCG 60.268 52.381 12.70 0.89 39.83 5.03
380 381 1.767289 GATACACATGTACCGAGCGG 58.233 55.000 7.48 7.48 42.03 5.52
409 410 4.069232 CCGCTCAGTTCGCCCAGA 62.069 66.667 0.00 0.00 0.00 3.86
410 411 2.185350 CGCTCAGTTCGCCCAGAT 59.815 61.111 0.00 0.00 0.00 2.90
411 412 1.437573 CGCTCAGTTCGCCCAGATA 59.562 57.895 0.00 0.00 0.00 1.98
412 413 0.872021 CGCTCAGTTCGCCCAGATAC 60.872 60.000 0.00 0.00 0.00 2.24
413 414 0.530870 GCTCAGTTCGCCCAGATACC 60.531 60.000 0.00 0.00 0.00 2.73
414 415 0.249073 CTCAGTTCGCCCAGATACCG 60.249 60.000 0.00 0.00 0.00 4.02
415 416 1.883084 CAGTTCGCCCAGATACCGC 60.883 63.158 0.00 0.00 0.00 5.68
417 418 4.884257 TTCGCCCAGATACCGCGC 62.884 66.667 0.00 0.00 45.34 6.86
423 424 2.961721 CAGATACCGCGCGTGCAT 60.962 61.111 29.95 17.95 42.97 3.96
424 425 2.202878 AGATACCGCGCGTGCATT 60.203 55.556 29.95 9.21 42.97 3.56
425 426 1.813753 AGATACCGCGCGTGCATTT 60.814 52.632 29.95 10.68 42.97 2.32
426 427 1.061887 GATACCGCGCGTGCATTTT 59.938 52.632 29.95 5.67 42.97 1.82
427 428 0.522495 GATACCGCGCGTGCATTTTT 60.522 50.000 29.95 3.94 42.97 1.94
509 510 9.841295 AAATAGCATCGTTTATAAGTAAAGGGA 57.159 29.630 0.00 0.00 36.69 4.20
513 514 9.269453 AGCATCGTTTATAAGTAAAGGGATAAC 57.731 33.333 0.00 0.00 36.69 1.89
514 515 8.501580 GCATCGTTTATAAGTAAAGGGATAACC 58.498 37.037 0.00 0.00 36.69 2.85
533 534 2.570135 CCTCATTAGGGAAAGCTCAGC 58.430 52.381 0.00 0.00 39.48 4.26
534 535 2.172293 CCTCATTAGGGAAAGCTCAGCT 59.828 50.000 0.00 0.00 38.98 4.24
535 536 3.465871 CTCATTAGGGAAAGCTCAGCTC 58.534 50.000 0.00 0.00 38.25 4.09
536 537 2.840038 TCATTAGGGAAAGCTCAGCTCA 59.160 45.455 0.00 0.00 38.25 4.26
537 538 2.770164 TTAGGGAAAGCTCAGCTCAC 57.230 50.000 0.00 0.00 38.25 3.51
538 539 0.532573 TAGGGAAAGCTCAGCTCACG 59.467 55.000 0.00 0.00 38.25 4.35
539 540 1.004440 GGGAAAGCTCAGCTCACGT 60.004 57.895 0.00 0.00 38.25 4.49
540 541 1.016653 GGGAAAGCTCAGCTCACGTC 61.017 60.000 0.00 0.00 38.25 4.34
541 542 0.037790 GGAAAGCTCAGCTCACGTCT 60.038 55.000 0.00 0.00 38.25 4.18
542 543 1.202582 GGAAAGCTCAGCTCACGTCTA 59.797 52.381 0.00 0.00 38.25 2.59
543 544 2.352814 GGAAAGCTCAGCTCACGTCTAA 60.353 50.000 0.00 0.00 38.25 2.10
544 545 3.318017 GAAAGCTCAGCTCACGTCTAAA 58.682 45.455 0.00 0.00 38.25 1.85
545 546 3.601443 AAGCTCAGCTCACGTCTAAAT 57.399 42.857 0.00 0.00 38.25 1.40
546 547 3.157932 AGCTCAGCTCACGTCTAAATC 57.842 47.619 0.00 0.00 30.62 2.17
547 548 2.757868 AGCTCAGCTCACGTCTAAATCT 59.242 45.455 0.00 0.00 30.62 2.40
548 549 2.857152 GCTCAGCTCACGTCTAAATCTG 59.143 50.000 0.00 0.00 0.00 2.90
549 550 3.443037 CTCAGCTCACGTCTAAATCTGG 58.557 50.000 0.00 0.00 0.00 3.86
550 551 2.166459 TCAGCTCACGTCTAAATCTGGG 59.834 50.000 0.00 0.00 0.00 4.45
551 552 1.482593 AGCTCACGTCTAAATCTGGGG 59.517 52.381 0.00 0.00 0.00 4.96
552 553 1.480954 GCTCACGTCTAAATCTGGGGA 59.519 52.381 0.00 0.00 0.00 4.81
553 554 2.103263 GCTCACGTCTAAATCTGGGGAT 59.897 50.000 0.00 0.00 0.00 3.85
554 555 3.800604 GCTCACGTCTAAATCTGGGGATC 60.801 52.174 0.00 0.00 0.00 3.36
555 556 3.371034 TCACGTCTAAATCTGGGGATCA 58.629 45.455 0.00 0.00 0.00 2.92
556 557 3.967326 TCACGTCTAAATCTGGGGATCAT 59.033 43.478 0.00 0.00 0.00 2.45
557 558 5.144832 TCACGTCTAAATCTGGGGATCATA 58.855 41.667 0.00 0.00 0.00 2.15
558 559 5.600898 TCACGTCTAAATCTGGGGATCATAA 59.399 40.000 0.00 0.00 0.00 1.90
559 560 6.270000 TCACGTCTAAATCTGGGGATCATAAT 59.730 38.462 0.00 0.00 0.00 1.28
560 561 7.453439 TCACGTCTAAATCTGGGGATCATAATA 59.547 37.037 0.00 0.00 0.00 0.98
561 562 8.260818 CACGTCTAAATCTGGGGATCATAATAT 58.739 37.037 0.00 0.00 0.00 1.28
562 563 8.478877 ACGTCTAAATCTGGGGATCATAATATC 58.521 37.037 0.00 0.00 0.00 1.63
563 564 8.478066 CGTCTAAATCTGGGGATCATAATATCA 58.522 37.037 0.00 0.00 0.00 2.15
581 582 6.819397 ATATCAAAGTCCAGATCATGCATG 57.181 37.500 21.07 21.07 0.00 4.06
611 612 0.178992 CCAAAAGGACAGCCACAGGA 60.179 55.000 0.00 0.00 36.29 3.86
654 656 6.656693 AGATCCAACTTAGAAAATCACCAGTG 59.343 38.462 0.00 0.00 0.00 3.66
689 707 3.880846 GGCCCATCGCGCTGAAAG 61.881 66.667 12.26 0.90 38.94 2.62
907 927 0.323542 CGAGTGGGAGGAGTAGTGGT 60.324 60.000 0.00 0.00 0.00 4.16
941 961 2.279069 CGAGACTGGCCAGTGGTCT 61.279 63.158 42.40 31.54 42.66 3.85
942 962 0.965866 CGAGACTGGCCAGTGGTCTA 60.966 60.000 42.40 0.00 42.66 2.59
980 1004 0.038159 CGGGTCCTTGTGTCTGTCTC 60.038 60.000 0.00 0.00 0.00 3.36
983 1007 2.243810 GGTCCTTGTGTCTGTCTCTCT 58.756 52.381 0.00 0.00 0.00 3.10
1263 1290 1.661112 GAGTTCATCAAGTGCTACGGC 59.339 52.381 0.00 0.00 39.26 5.68
1344 1382 3.009714 AAGGTCCGCTTCTCCCCC 61.010 66.667 0.00 0.00 0.00 5.40
1360 1401 1.673337 CCCCGACCCTCGTTTTTCC 60.673 63.158 0.00 0.00 38.40 3.13
1372 1413 4.290969 CTCGTTTTTCCTTTTCTCTTGGC 58.709 43.478 0.00 0.00 0.00 4.52
1434 1475 5.818136 TCCATGGAAAAAGATCGAATGTC 57.182 39.130 13.46 0.00 0.00 3.06
1478 1523 0.673333 AGATTCGCATGCGGTTGTCA 60.673 50.000 37.18 16.54 40.25 3.58
1514 1563 5.258841 TGTTCGGAGGAGTACTAGATTTGA 58.741 41.667 0.00 0.00 0.00 2.69
1532 1581 1.929494 TGAGGAATTTATGGCCTGGGT 59.071 47.619 3.32 0.00 30.70 4.51
1578 1627 3.888930 TGATCCACACTTCAAAGTTTCCC 59.111 43.478 0.00 0.00 37.08 3.97
1580 1629 1.686587 CCACACTTCAAAGTTTCCCCC 59.313 52.381 0.00 0.00 37.08 5.40
1582 1631 2.362077 CACACTTCAAAGTTTCCCCCAG 59.638 50.000 0.00 0.00 37.08 4.45
1619 1668 4.929211 GTCTTGGCAAAAACAAAAGACTGT 59.071 37.500 0.00 0.00 42.13 3.55
1634 1683 8.827677 ACAAAAGACTGTTGTTGTATCTAAGAC 58.172 33.333 5.10 0.00 35.70 3.01
1635 1684 7.964604 AAAGACTGTTGTTGTATCTAAGACC 57.035 36.000 0.00 0.00 0.00 3.85
1638 1687 7.506114 AGACTGTTGTTGTATCTAAGACCAAA 58.494 34.615 0.00 0.00 0.00 3.28
1639 1688 7.441458 AGACTGTTGTTGTATCTAAGACCAAAC 59.559 37.037 0.00 0.00 0.00 2.93
1640 1689 7.051623 ACTGTTGTTGTATCTAAGACCAAACA 58.948 34.615 0.00 0.00 0.00 2.83
1641 1690 7.554835 ACTGTTGTTGTATCTAAGACCAAACAA 59.445 33.333 0.00 0.00 0.00 2.83
1642 1691 8.458573 TGTTGTTGTATCTAAGACCAAACAAT 57.541 30.769 8.08 0.00 0.00 2.71
1646 1695 9.214957 TGTTGTATCTAAGACCAAACAATACAG 57.785 33.333 0.00 0.00 31.83 2.74
2016 2069 1.743394 CACAGCGGGTAAGGAATTTCC 59.257 52.381 7.39 7.39 36.58 3.13
2067 2259 3.117776 TGCTGCTAGTGATGGATGGATTT 60.118 43.478 0.00 0.00 0.00 2.17
2072 2264 7.555554 GCTGCTAGTGATGGATGGATTTATAAT 59.444 37.037 0.00 0.00 0.00 1.28
2098 2290 1.945394 GAGTTGCTGGATGATTGCGAT 59.055 47.619 0.00 0.00 0.00 4.58
2099 2291 1.674441 AGTTGCTGGATGATTGCGATG 59.326 47.619 0.00 0.00 0.00 3.84
2102 2294 2.916640 TGCTGGATGATTGCGATGTTA 58.083 42.857 0.00 0.00 0.00 2.41
2103 2295 2.874086 TGCTGGATGATTGCGATGTTAG 59.126 45.455 0.00 0.00 0.00 2.34
2104 2296 2.350197 GCTGGATGATTGCGATGTTAGC 60.350 50.000 0.00 0.00 0.00 3.09
2105 2297 3.136763 CTGGATGATTGCGATGTTAGCT 58.863 45.455 0.00 0.00 35.28 3.32
2106 2298 2.874086 TGGATGATTGCGATGTTAGCTG 59.126 45.455 0.00 0.00 35.28 4.24
2107 2299 2.350197 GGATGATTGCGATGTTAGCTGC 60.350 50.000 0.00 0.00 35.28 5.25
2108 2300 1.736612 TGATTGCGATGTTAGCTGCA 58.263 45.000 1.02 0.00 35.15 4.41
2109 2301 2.291365 TGATTGCGATGTTAGCTGCAT 58.709 42.857 1.02 0.02 37.17 3.96
2110 2302 2.032426 TGATTGCGATGTTAGCTGCATG 59.968 45.455 9.83 0.00 37.17 4.06
2111 2303 1.736612 TTGCGATGTTAGCTGCATGA 58.263 45.000 9.83 0.00 37.17 3.07
2112 2304 1.009078 TGCGATGTTAGCTGCATGAC 58.991 50.000 9.83 0.00 35.28 3.06
2113 2305 1.009078 GCGATGTTAGCTGCATGACA 58.991 50.000 9.83 3.78 0.00 3.58
2114 2306 1.267732 GCGATGTTAGCTGCATGACAC 60.268 52.381 9.83 0.00 0.00 3.67
2115 2307 1.328680 CGATGTTAGCTGCATGACACC 59.671 52.381 9.83 0.00 0.00 4.16
2116 2308 2.358957 GATGTTAGCTGCATGACACCA 58.641 47.619 9.83 0.00 0.00 4.17
2117 2309 2.268762 TGTTAGCTGCATGACACCAA 57.731 45.000 1.02 0.00 0.00 3.67
2118 2310 2.580962 TGTTAGCTGCATGACACCAAA 58.419 42.857 1.02 0.00 0.00 3.28
2119 2311 3.156293 TGTTAGCTGCATGACACCAAAT 58.844 40.909 1.02 0.00 0.00 2.32
2120 2312 4.331108 TGTTAGCTGCATGACACCAAATA 58.669 39.130 1.02 0.00 0.00 1.40
2121 2313 4.949238 TGTTAGCTGCATGACACCAAATAT 59.051 37.500 1.02 0.00 0.00 1.28
2122 2314 5.163632 TGTTAGCTGCATGACACCAAATATG 60.164 40.000 1.02 0.00 0.00 1.78
2123 2315 3.623703 AGCTGCATGACACCAAATATGA 58.376 40.909 1.02 0.00 0.00 2.15
2124 2316 3.379372 AGCTGCATGACACCAAATATGAC 59.621 43.478 1.02 0.00 0.00 3.06
2125 2317 3.379372 GCTGCATGACACCAAATATGACT 59.621 43.478 0.00 0.00 0.00 3.41
2126 2318 4.576053 GCTGCATGACACCAAATATGACTA 59.424 41.667 0.00 0.00 0.00 2.59
2127 2319 5.066375 GCTGCATGACACCAAATATGACTAA 59.934 40.000 0.00 0.00 0.00 2.24
2128 2320 6.404623 GCTGCATGACACCAAATATGACTAAA 60.405 38.462 0.00 0.00 0.00 1.85
2129 2321 7.459795 TGCATGACACCAAATATGACTAAAA 57.540 32.000 0.00 0.00 0.00 1.52
2130 2322 8.065473 TGCATGACACCAAATATGACTAAAAT 57.935 30.769 0.00 0.00 0.00 1.82
2131 2323 8.190122 TGCATGACACCAAATATGACTAAAATC 58.810 33.333 0.00 0.00 0.00 2.17
2132 2324 7.376866 GCATGACACCAAATATGACTAAAATCG 59.623 37.037 0.00 0.00 0.00 3.34
2133 2325 7.315247 TGACACCAAATATGACTAAAATCGG 57.685 36.000 0.00 0.00 0.00 4.18
2134 2326 6.882140 TGACACCAAATATGACTAAAATCGGT 59.118 34.615 0.00 0.00 0.00 4.69
2135 2327 8.041919 TGACACCAAATATGACTAAAATCGGTA 58.958 33.333 0.00 0.00 0.00 4.02
2136 2328 8.205131 ACACCAAATATGACTAAAATCGGTAC 57.795 34.615 0.00 0.00 0.00 3.34
2137 2329 7.281549 ACACCAAATATGACTAAAATCGGTACC 59.718 37.037 0.16 0.16 0.00 3.34
2138 2330 7.281324 CACCAAATATGACTAAAATCGGTACCA 59.719 37.037 13.54 0.00 0.00 3.25
2139 2331 7.830201 ACCAAATATGACTAAAATCGGTACCAA 59.170 33.333 13.54 0.00 0.00 3.67
2140 2332 8.846211 CCAAATATGACTAAAATCGGTACCAAT 58.154 33.333 13.54 0.00 0.00 3.16
2141 2333 9.663904 CAAATATGACTAAAATCGGTACCAATG 57.336 33.333 13.54 0.00 0.00 2.82
2142 2334 9.621629 AAATATGACTAAAATCGGTACCAATGA 57.378 29.630 13.54 1.05 0.00 2.57
2143 2335 9.621629 AATATGACTAAAATCGGTACCAATGAA 57.378 29.630 13.54 0.00 0.00 2.57
2144 2336 9.793259 ATATGACTAAAATCGGTACCAATGAAT 57.207 29.630 13.54 0.00 0.00 2.57
2146 2338 9.793259 ATGACTAAAATCGGTACCAATGAATAT 57.207 29.630 13.54 0.00 0.00 1.28
2147 2339 9.621629 TGACTAAAATCGGTACCAATGAATATT 57.378 29.630 13.54 0.00 0.00 1.28
2152 2344 7.979444 AATCGGTACCAATGAATATTAGTGG 57.021 36.000 13.54 9.09 0.00 4.00
2153 2345 5.860611 TCGGTACCAATGAATATTAGTGGG 58.139 41.667 13.54 4.57 0.00 4.61
2154 2346 5.001232 CGGTACCAATGAATATTAGTGGGG 58.999 45.833 13.54 4.51 0.00 4.96
2155 2347 5.321927 GGTACCAATGAATATTAGTGGGGG 58.678 45.833 7.15 3.67 0.00 5.40
2171 2363 1.422161 GGGGAGCTGCATGGGTCTAT 61.422 60.000 7.79 0.00 34.55 1.98
2182 2374 6.000246 TGCATGGGTCTATGTCTGAATTAA 58.000 37.500 0.00 0.00 0.00 1.40
2264 2780 9.643693 GGAATACATTTCTTTGTTCATCAACAT 57.356 29.630 0.00 0.00 42.28 2.71
2391 2908 5.750067 GCTGTGTTTCAATTCATGTGACTTT 59.250 36.000 0.00 0.00 0.00 2.66
2403 2920 8.947055 ATTCATGTGACTTTATTATTTTGGCC 57.053 30.769 0.00 0.00 0.00 5.36
2479 2997 8.608844 ACAACCTACAAGTCTTGAAGAAATAG 57.391 34.615 19.53 8.75 0.00 1.73
2499 3019 8.848474 AAATAGTAATGTGTGAACAGCTAAGT 57.152 30.769 0.00 0.00 0.00 2.24
2505 3025 5.984233 TGTGTGAACAGCTAAGTTACAAG 57.016 39.130 0.00 0.00 0.00 3.16
2511 3031 4.286297 ACAGCTAAGTTACAAGATGCCA 57.714 40.909 3.51 0.00 32.40 4.92
2523 3043 5.057843 ACAAGATGCCACATCTAATCCAT 57.942 39.130 10.33 0.00 0.00 3.41
2524 3044 5.452255 ACAAGATGCCACATCTAATCCATT 58.548 37.500 10.33 0.00 0.00 3.16
2556 3095 3.187227 CAGTTGTTGCTATGACCAGTGAC 59.813 47.826 0.00 0.00 0.00 3.67
2589 3140 8.687242 CATGACTACTCCACTGAACTTTATCTA 58.313 37.037 0.00 0.00 0.00 1.98
2909 3460 9.569167 CTGTTTATATCTTCTTCTGTCGTTACA 57.431 33.333 0.00 0.00 0.00 2.41
3044 3612 5.178096 TGAAATAGTTGAAGGATCTGGCA 57.822 39.130 0.00 0.00 0.00 4.92
3071 3639 0.179018 ACGGCAAGAAAGAAGGTGCT 60.179 50.000 0.00 0.00 37.17 4.40
3086 3654 1.571919 GTGCTGACGGATTCGCTTAT 58.428 50.000 0.00 0.00 40.63 1.73
3152 3720 4.406972 CCTCCCTGATGATCTTGTTCAGTA 59.593 45.833 11.75 3.28 36.06 2.74
3185 3753 5.008613 GTGAAAATAGTTGTGTTGAGCTGGA 59.991 40.000 0.00 0.00 0.00 3.86
3239 3807 1.013596 TCTTGCAAGTGTGGTGAACG 58.986 50.000 25.19 0.00 0.00 3.95
3255 3823 4.062991 GTGAACGTCCCTGAACTTGTTAT 58.937 43.478 0.00 0.00 0.00 1.89
3356 3926 7.452880 AGAAAAGTATGATTAAGCTTGTGCA 57.547 32.000 9.86 4.29 42.74 4.57
3491 4064 6.294286 CGTTTTAAACTTTGGGAGGATAGCAA 60.294 38.462 6.27 0.00 0.00 3.91
3571 4149 7.254852 TGAAAACACAGTTTAGACCATGAAAC 58.745 34.615 0.00 0.00 36.08 2.78
3739 4322 4.018597 AGCAAGGGAGTCTGATCTGAAAAT 60.019 41.667 3.59 0.00 0.00 1.82
3765 4348 5.192927 CCTAGAAGCCATTCAATAACCACA 58.807 41.667 0.00 0.00 37.94 4.17
3798 4381 5.438761 GTTGCAGAAACAACTGGAATACT 57.561 39.130 0.00 0.00 46.27 2.12
3799 4382 5.831997 GTTGCAGAAACAACTGGAATACTT 58.168 37.500 0.00 0.00 46.27 2.24
3803 4386 7.816640 TGCAGAAACAACTGGAATACTTAATC 58.183 34.615 0.00 0.00 35.47 1.75
3806 4389 7.611855 CAGAAACAACTGGAATACTTAATCCCT 59.388 37.037 0.00 0.00 34.68 4.20
3808 4391 9.457436 GAAACAACTGGAATACTTAATCCCTTA 57.543 33.333 0.00 0.00 34.68 2.69
3813 4396 8.568617 ACTGGAATACTTAATCCCTTAGACAT 57.431 34.615 0.00 0.00 34.68 3.06
3823 4406 9.626045 CTTAATCCCTTAGACATTCAAAAACAC 57.374 33.333 0.00 0.00 0.00 3.32
3844 4427 2.222796 CGACGCACGTCAAAATGATGAT 60.223 45.455 21.66 0.00 44.77 2.45
3857 4440 7.007725 GTCAAAATGATGATTCACAACACGATC 59.992 37.037 0.00 0.00 34.32 3.69
3881 4472 4.422073 TCAAAAGGACTGAAAGAGCTCA 57.578 40.909 17.77 0.00 37.43 4.26
3940 4531 1.524482 GAGCCTCCCAGATGGACAC 59.476 63.158 0.00 0.00 38.61 3.67
3952 4543 3.068165 CAGATGGACACTCGTAAGCCATA 59.932 47.826 0.00 0.00 39.32 2.74
3991 4582 3.570975 AGTTGTTGCAGATCATGAAAGCA 59.429 39.130 13.88 13.88 0.00 3.91
4064 4655 0.037326 CACGTCACTGTAGCCACCAT 60.037 55.000 0.00 0.00 0.00 3.55
4085 4676 3.245668 AAGAGAGCACCACCGCCAG 62.246 63.158 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.391597 CTTCCGTATGCCCCGTATGT 59.608 55.000 0.00 0.00 0.00 2.29
5 6 2.588877 CTGCTTCCGTATGCCCCG 60.589 66.667 0.00 0.00 0.00 5.73
6 7 2.203209 CCTGCTTCCGTATGCCCC 60.203 66.667 0.00 0.00 0.00 5.80
7 8 2.203209 CCCTGCTTCCGTATGCCC 60.203 66.667 0.00 0.00 0.00 5.36
8 9 2.203209 CCCCTGCTTCCGTATGCC 60.203 66.667 0.00 0.00 0.00 4.40
9 10 1.227674 CTCCCCTGCTTCCGTATGC 60.228 63.158 0.00 0.00 0.00 3.14
10 11 1.227674 GCTCCCCTGCTTCCGTATG 60.228 63.158 0.00 0.00 0.00 2.39
11 12 1.689233 TGCTCCCCTGCTTCCGTAT 60.689 57.895 0.00 0.00 0.00 3.06
12 13 2.284331 TGCTCCCCTGCTTCCGTA 60.284 61.111 0.00 0.00 0.00 4.02
13 14 3.710722 CTGCTCCCCTGCTTCCGT 61.711 66.667 0.00 0.00 0.00 4.69
14 15 4.479993 CCTGCTCCCCTGCTTCCG 62.480 72.222 0.00 0.00 0.00 4.30
15 16 4.811364 GCCTGCTCCCCTGCTTCC 62.811 72.222 0.00 0.00 0.00 3.46
16 17 4.811364 GGCCTGCTCCCCTGCTTC 62.811 72.222 0.00 0.00 0.00 3.86
74 75 3.807538 GTGCCCAGCATGCGTCAG 61.808 66.667 13.01 3.82 41.91 3.51
91 92 1.937846 CTTCCGATGACGTACGCCG 60.938 63.158 16.72 13.37 44.03 6.46
92 93 1.588139 CCTTCCGATGACGTACGCC 60.588 63.158 16.72 4.46 37.88 5.68
93 94 2.228914 GCCTTCCGATGACGTACGC 61.229 63.158 16.72 8.98 37.88 4.42
94 95 1.937846 CGCCTTCCGATGACGTACG 60.938 63.158 15.01 15.01 40.02 3.67
95 96 1.588139 CCGCCTTCCGATGACGTAC 60.588 63.158 0.00 0.00 40.02 3.67
96 97 2.802792 CCGCCTTCCGATGACGTA 59.197 61.111 0.00 0.00 40.02 3.57
97 98 4.814294 GCCGCCTTCCGATGACGT 62.814 66.667 0.00 0.00 40.02 4.34
137 138 4.880537 CTCCTGCTGCCGGCTACG 62.881 72.222 29.70 16.88 42.39 3.51
170 171 4.475135 GCTCCTCCTCCCGGCAAC 62.475 72.222 0.00 0.00 0.00 4.17
199 200 1.964373 TTCCTCTTTCGGGCAACGC 60.964 57.895 0.00 0.00 43.86 4.84
200 201 1.866925 GTTCCTCTTTCGGGCAACG 59.133 57.895 0.00 0.00 46.11 4.10
201 202 1.574702 CCGTTCCTCTTTCGGGCAAC 61.575 60.000 0.00 0.00 40.49 4.17
202 203 1.302192 CCGTTCCTCTTTCGGGCAA 60.302 57.895 0.00 0.00 40.49 4.52
203 204 2.345991 CCGTTCCTCTTTCGGGCA 59.654 61.111 0.00 0.00 40.49 5.36
204 205 3.125573 GCCGTTCCTCTTTCGGGC 61.126 66.667 5.06 0.00 43.77 6.13
205 206 2.813908 CGCCGTTCCTCTTTCGGG 60.814 66.667 5.06 0.00 43.77 5.14
206 207 2.048503 ACGCCGTTCCTCTTTCGG 60.049 61.111 0.00 0.00 45.94 4.30
207 208 2.380410 CCACGCCGTTCCTCTTTCG 61.380 63.158 0.00 0.00 0.00 3.46
208 209 2.677979 GCCACGCCGTTCCTCTTTC 61.678 63.158 0.00 0.00 0.00 2.62
209 210 2.668550 GCCACGCCGTTCCTCTTT 60.669 61.111 0.00 0.00 0.00 2.52
233 234 3.997064 CTTGCCTCCTCCTGCGACG 62.997 68.421 0.00 0.00 0.00 5.12
234 235 2.125350 CTTGCCTCCTCCTGCGAC 60.125 66.667 0.00 0.00 0.00 5.19
235 236 3.393970 CCTTGCCTCCTCCTGCGA 61.394 66.667 0.00 0.00 0.00 5.10
238 239 4.479993 CCGCCTTGCCTCCTCCTG 62.480 72.222 0.00 0.00 0.00 3.86
252 253 4.162690 CTACCCTCCCACTGCCGC 62.163 72.222 0.00 0.00 0.00 6.53
253 254 2.291043 AACTACCCTCCCACTGCCG 61.291 63.158 0.00 0.00 0.00 5.69
254 255 1.198759 TCAACTACCCTCCCACTGCC 61.199 60.000 0.00 0.00 0.00 4.85
255 256 0.250513 CTCAACTACCCTCCCACTGC 59.749 60.000 0.00 0.00 0.00 4.40
256 257 1.276421 CACTCAACTACCCTCCCACTG 59.724 57.143 0.00 0.00 0.00 3.66
257 258 1.645710 CACTCAACTACCCTCCCACT 58.354 55.000 0.00 0.00 0.00 4.00
258 259 0.613777 CCACTCAACTACCCTCCCAC 59.386 60.000 0.00 0.00 0.00 4.61
259 260 0.490017 TCCACTCAACTACCCTCCCA 59.510 55.000 0.00 0.00 0.00 4.37
260 261 1.880941 ATCCACTCAACTACCCTCCC 58.119 55.000 0.00 0.00 0.00 4.30
261 262 3.388350 CCTTATCCACTCAACTACCCTCC 59.612 52.174 0.00 0.00 0.00 4.30
262 263 4.287552 TCCTTATCCACTCAACTACCCTC 58.712 47.826 0.00 0.00 0.00 4.30
263 264 4.348020 TCCTTATCCACTCAACTACCCT 57.652 45.455 0.00 0.00 0.00 4.34
264 265 4.224370 TGTTCCTTATCCACTCAACTACCC 59.776 45.833 0.00 0.00 0.00 3.69
265 266 5.176592 GTGTTCCTTATCCACTCAACTACC 58.823 45.833 0.00 0.00 0.00 3.18
266 267 4.863131 CGTGTTCCTTATCCACTCAACTAC 59.137 45.833 0.00 0.00 0.00 2.73
267 268 4.768448 TCGTGTTCCTTATCCACTCAACTA 59.232 41.667 0.00 0.00 0.00 2.24
268 269 3.576982 TCGTGTTCCTTATCCACTCAACT 59.423 43.478 0.00 0.00 0.00 3.16
269 270 3.678548 GTCGTGTTCCTTATCCACTCAAC 59.321 47.826 0.00 0.00 0.00 3.18
270 271 3.613193 CGTCGTGTTCCTTATCCACTCAA 60.613 47.826 0.00 0.00 0.00 3.02
271 272 2.094906 CGTCGTGTTCCTTATCCACTCA 60.095 50.000 0.00 0.00 0.00 3.41
272 273 2.094854 ACGTCGTGTTCCTTATCCACTC 60.095 50.000 0.00 0.00 0.00 3.51
273 274 1.891150 ACGTCGTGTTCCTTATCCACT 59.109 47.619 0.00 0.00 0.00 4.00
274 275 1.990563 CACGTCGTGTTCCTTATCCAC 59.009 52.381 17.30 0.00 0.00 4.02
275 276 1.614903 ACACGTCGTGTTCCTTATCCA 59.385 47.619 24.87 0.00 45.08 3.41
276 277 2.358939 ACACGTCGTGTTCCTTATCC 57.641 50.000 24.87 0.00 45.08 2.59
286 287 2.177531 CGGGGTAGACACGTCGTG 59.822 66.667 23.40 23.40 39.75 4.35
287 288 3.058160 CCGGGGTAGACACGTCGT 61.058 66.667 0.00 0.00 34.09 4.34
288 289 3.818787 CCCGGGGTAGACACGTCG 61.819 72.222 14.71 0.00 34.09 5.12
289 290 2.677875 ACCCGGGGTAGACACGTC 60.678 66.667 27.92 0.00 32.11 4.34
290 291 2.993264 CACCCGGGGTAGACACGT 60.993 66.667 27.92 0.00 32.11 4.49
291 292 2.677524 TCACCCGGGGTAGACACG 60.678 66.667 27.92 5.41 32.11 4.49
292 293 3.015312 GCTCACCCGGGGTAGACAC 62.015 68.421 27.92 8.70 32.11 3.67
293 294 2.682494 GCTCACCCGGGGTAGACA 60.682 66.667 27.92 2.17 32.11 3.41
294 295 3.834799 CGCTCACCCGGGGTAGAC 61.835 72.222 27.92 15.38 32.11 2.59
295 296 3.369410 ATCGCTCACCCGGGGTAGA 62.369 63.158 27.92 18.43 32.11 2.59
296 297 2.838225 ATCGCTCACCCGGGGTAG 60.838 66.667 27.92 22.07 32.11 3.18
297 298 2.836360 GATCGCTCACCCGGGGTA 60.836 66.667 27.92 11.57 32.11 3.69
310 311 1.421410 CGGGAGAGTTTTGCGGATCG 61.421 60.000 0.00 0.00 0.00 3.69
311 312 0.108329 TCGGGAGAGTTTTGCGGATC 60.108 55.000 0.00 0.00 0.00 3.36
312 313 0.391263 GTCGGGAGAGTTTTGCGGAT 60.391 55.000 0.00 0.00 41.26 4.18
313 314 1.005394 GTCGGGAGAGTTTTGCGGA 60.005 57.895 0.00 0.00 41.26 5.54
314 315 2.033194 GGTCGGGAGAGTTTTGCGG 61.033 63.158 0.00 0.00 41.26 5.69
315 316 1.291877 CTGGTCGGGAGAGTTTTGCG 61.292 60.000 0.00 0.00 41.26 4.85
316 317 0.034896 TCTGGTCGGGAGAGTTTTGC 59.965 55.000 0.00 0.00 41.26 3.68
317 318 2.770164 ATCTGGTCGGGAGAGTTTTG 57.230 50.000 0.00 0.00 41.26 2.44
318 319 3.368116 CGTTATCTGGTCGGGAGAGTTTT 60.368 47.826 0.00 0.00 41.26 2.43
319 320 2.165845 CGTTATCTGGTCGGGAGAGTTT 59.834 50.000 0.00 0.00 41.26 2.66
320 321 1.749634 CGTTATCTGGTCGGGAGAGTT 59.250 52.381 0.00 0.00 41.26 3.01
321 322 1.390565 CGTTATCTGGTCGGGAGAGT 58.609 55.000 0.00 0.00 41.26 3.24
322 323 0.030908 GCGTTATCTGGTCGGGAGAG 59.969 60.000 0.00 0.00 41.26 3.20
323 324 1.389609 GGCGTTATCTGGTCGGGAGA 61.390 60.000 0.00 0.00 0.00 3.71
324 325 1.067582 GGCGTTATCTGGTCGGGAG 59.932 63.158 0.00 0.00 0.00 4.30
325 326 1.380785 AGGCGTTATCTGGTCGGGA 60.381 57.895 0.00 0.00 0.00 5.14
326 327 1.227263 CAGGCGTTATCTGGTCGGG 60.227 63.158 0.00 0.00 0.00 5.14
327 328 1.227263 CCAGGCGTTATCTGGTCGG 60.227 63.158 2.21 0.00 44.97 4.79
328 329 4.420143 CCAGGCGTTATCTGGTCG 57.580 61.111 2.21 0.00 44.97 4.79
332 333 1.709147 GCAGTGCCAGGCGTTATCTG 61.709 60.000 7.03 10.81 0.00 2.90
333 334 1.450312 GCAGTGCCAGGCGTTATCT 60.450 57.895 7.03 0.00 0.00 1.98
334 335 3.102097 GCAGTGCCAGGCGTTATC 58.898 61.111 7.03 0.00 0.00 1.75
346 347 3.128632 TATCGTACGGCCCGCAGTG 62.129 63.158 16.52 0.00 0.00 3.66
347 348 2.829914 TATCGTACGGCCCGCAGT 60.830 61.111 16.52 0.00 0.00 4.40
348 349 2.354305 GTATCGTACGGCCCGCAG 60.354 66.667 16.52 0.00 0.00 5.18
349 350 3.139469 TGTATCGTACGGCCCGCA 61.139 61.111 16.52 5.23 0.00 5.69
350 351 2.656328 GTGTATCGTACGGCCCGC 60.656 66.667 16.52 6.13 0.00 6.13
351 352 0.937699 CATGTGTATCGTACGGCCCG 60.938 60.000 16.52 0.00 0.00 6.13
352 353 0.103572 ACATGTGTATCGTACGGCCC 59.896 55.000 16.52 3.78 0.00 5.80
353 354 2.388121 GTACATGTGTATCGTACGGCC 58.612 52.381 16.52 4.15 32.54 6.13
354 355 2.388121 GGTACATGTGTATCGTACGGC 58.612 52.381 16.52 6.93 37.06 5.68
355 356 2.642995 CGGTACATGTGTATCGTACGG 58.357 52.381 16.52 0.00 46.66 4.02
361 362 1.767289 CCGCTCGGTACATGTGTATC 58.233 55.000 9.11 0.00 32.54 2.24
362 363 3.959478 CCGCTCGGTACATGTGTAT 57.041 52.632 9.11 0.00 32.54 2.29
392 393 2.016393 TATCTGGGCGAACTGAGCGG 62.016 60.000 0.00 0.00 35.00 5.52
393 394 0.872021 GTATCTGGGCGAACTGAGCG 60.872 60.000 0.00 0.00 35.00 5.03
394 395 0.530870 GGTATCTGGGCGAACTGAGC 60.531 60.000 0.00 0.00 0.00 4.26
395 396 0.249073 CGGTATCTGGGCGAACTGAG 60.249 60.000 0.00 0.00 0.00 3.35
396 397 1.813859 CGGTATCTGGGCGAACTGA 59.186 57.895 0.00 0.00 0.00 3.41
397 398 1.883084 GCGGTATCTGGGCGAACTG 60.883 63.158 0.00 0.00 0.00 3.16
398 399 2.499685 GCGGTATCTGGGCGAACT 59.500 61.111 0.00 0.00 0.00 3.01
406 407 2.035617 AAATGCACGCGCGGTATCTG 62.036 55.000 35.22 23.19 42.97 2.90
407 408 1.366111 AAAATGCACGCGCGGTATCT 61.366 50.000 35.22 11.92 42.97 1.98
408 409 0.522495 AAAAATGCACGCGCGGTATC 60.522 50.000 35.22 19.10 42.97 2.24
409 410 1.504446 AAAAATGCACGCGCGGTAT 59.496 47.368 35.22 23.27 42.97 2.73
410 411 2.947542 AAAAATGCACGCGCGGTA 59.052 50.000 35.22 22.05 42.97 4.02
483 484 9.841295 TCCCTTTACTTATAAACGATGCTATTT 57.159 29.630 0.00 0.00 0.00 1.40
487 488 9.269453 GTTATCCCTTTACTTATAAACGATGCT 57.731 33.333 0.00 0.00 0.00 3.79
488 489 8.501580 GGTTATCCCTTTACTTATAAACGATGC 58.498 37.037 0.00 0.00 0.00 3.91
489 490 9.774413 AGGTTATCCCTTTACTTATAAACGATG 57.226 33.333 0.00 0.00 42.73 3.84
490 491 9.993454 GAGGTTATCCCTTTACTTATAAACGAT 57.007 33.333 0.00 0.00 46.51 3.73
491 492 8.980596 TGAGGTTATCCCTTTACTTATAAACGA 58.019 33.333 0.00 0.00 46.51 3.85
492 493 9.774413 ATGAGGTTATCCCTTTACTTATAAACG 57.226 33.333 0.00 0.00 46.51 3.60
497 498 8.891501 CCCTAATGAGGTTATCCCTTTACTTAT 58.108 37.037 0.00 0.00 46.51 1.73
498 499 8.075621 TCCCTAATGAGGTTATCCCTTTACTTA 58.924 37.037 0.00 0.00 46.51 2.24
499 500 6.912561 TCCCTAATGAGGTTATCCCTTTACTT 59.087 38.462 0.00 0.00 46.51 2.24
500 501 6.458784 TCCCTAATGAGGTTATCCCTTTACT 58.541 40.000 0.00 0.00 46.51 2.24
501 502 6.758806 TCCCTAATGAGGTTATCCCTTTAC 57.241 41.667 0.00 0.00 46.51 2.01
502 503 7.639534 GCTTTCCCTAATGAGGTTATCCCTTTA 60.640 40.741 0.00 0.00 46.51 1.85
503 504 6.668133 TTTCCCTAATGAGGTTATCCCTTT 57.332 37.500 0.00 0.00 46.51 3.11
504 505 5.399152 GCTTTCCCTAATGAGGTTATCCCTT 60.399 44.000 0.00 0.00 46.51 3.95
506 507 4.104897 AGCTTTCCCTAATGAGGTTATCCC 59.895 45.833 0.00 0.00 41.95 3.85
507 508 5.163195 TGAGCTTTCCCTAATGAGGTTATCC 60.163 44.000 0.00 0.00 41.95 2.59
508 509 5.930135 TGAGCTTTCCCTAATGAGGTTATC 58.070 41.667 0.00 0.00 41.95 1.75
509 510 5.688766 GCTGAGCTTTCCCTAATGAGGTTAT 60.689 44.000 0.00 0.00 41.95 1.89
510 511 4.384208 GCTGAGCTTTCCCTAATGAGGTTA 60.384 45.833 0.00 0.00 41.95 2.85
511 512 3.623453 GCTGAGCTTTCCCTAATGAGGTT 60.623 47.826 0.00 0.00 41.95 3.50
512 513 2.092699 GCTGAGCTTTCCCTAATGAGGT 60.093 50.000 0.00 0.00 41.95 3.85
513 514 2.172293 AGCTGAGCTTTCCCTAATGAGG 59.828 50.000 0.00 0.00 38.00 3.86
514 515 3.118482 TGAGCTGAGCTTTCCCTAATGAG 60.118 47.826 9.00 0.00 39.88 2.90
515 516 2.840038 TGAGCTGAGCTTTCCCTAATGA 59.160 45.455 9.00 0.00 39.88 2.57
516 517 2.941720 GTGAGCTGAGCTTTCCCTAATG 59.058 50.000 9.00 0.00 39.88 1.90
517 518 2.419297 CGTGAGCTGAGCTTTCCCTAAT 60.419 50.000 9.00 0.00 39.88 1.73
518 519 1.066858 CGTGAGCTGAGCTTTCCCTAA 60.067 52.381 9.00 0.00 39.88 2.69
519 520 0.532573 CGTGAGCTGAGCTTTCCCTA 59.467 55.000 9.00 0.00 39.88 3.53
520 521 1.294780 CGTGAGCTGAGCTTTCCCT 59.705 57.895 9.00 0.00 39.88 4.20
521 522 1.004440 ACGTGAGCTGAGCTTTCCC 60.004 57.895 9.00 0.00 39.88 3.97
522 523 0.037790 AGACGTGAGCTGAGCTTTCC 60.038 55.000 9.00 0.00 39.88 3.13
523 524 2.638556 TAGACGTGAGCTGAGCTTTC 57.361 50.000 9.00 4.02 39.88 2.62
524 525 3.386768 TTTAGACGTGAGCTGAGCTTT 57.613 42.857 9.00 0.00 39.88 3.51
525 526 3.194542 AGATTTAGACGTGAGCTGAGCTT 59.805 43.478 9.00 0.00 39.88 3.74
526 527 2.757868 AGATTTAGACGTGAGCTGAGCT 59.242 45.455 6.69 6.69 43.88 4.09
527 528 2.857152 CAGATTTAGACGTGAGCTGAGC 59.143 50.000 0.00 0.00 0.00 4.26
528 529 3.443037 CCAGATTTAGACGTGAGCTGAG 58.557 50.000 0.00 0.00 0.00 3.35
529 530 2.166459 CCCAGATTTAGACGTGAGCTGA 59.834 50.000 0.00 0.00 0.00 4.26
530 531 2.544685 CCCAGATTTAGACGTGAGCTG 58.455 52.381 0.00 0.00 0.00 4.24
531 532 1.482593 CCCCAGATTTAGACGTGAGCT 59.517 52.381 0.00 0.00 0.00 4.09
532 533 1.480954 TCCCCAGATTTAGACGTGAGC 59.519 52.381 0.00 0.00 0.00 4.26
533 534 3.384789 TGATCCCCAGATTTAGACGTGAG 59.615 47.826 0.00 0.00 30.90 3.51
534 535 3.371034 TGATCCCCAGATTTAGACGTGA 58.629 45.455 0.00 0.00 30.90 4.35
535 536 3.819564 TGATCCCCAGATTTAGACGTG 57.180 47.619 0.00 0.00 30.90 4.49
536 537 6.688073 ATTATGATCCCCAGATTTAGACGT 57.312 37.500 0.00 0.00 30.90 4.34
537 538 8.478066 TGATATTATGATCCCCAGATTTAGACG 58.522 37.037 0.00 0.00 30.90 4.18
542 543 9.525826 GACTTTGATATTATGATCCCCAGATTT 57.474 33.333 0.00 0.00 30.90 2.17
543 544 8.112183 GGACTTTGATATTATGATCCCCAGATT 58.888 37.037 0.00 0.00 30.90 2.40
544 545 7.240405 TGGACTTTGATATTATGATCCCCAGAT 59.760 37.037 0.00 0.00 34.57 2.90
545 546 6.562223 TGGACTTTGATATTATGATCCCCAGA 59.438 38.462 0.00 0.00 0.00 3.86
546 547 6.782986 TGGACTTTGATATTATGATCCCCAG 58.217 40.000 0.00 0.00 0.00 4.45
547 548 6.562223 TCTGGACTTTGATATTATGATCCCCA 59.438 38.462 0.00 0.00 0.00 4.96
548 549 7.020827 TCTGGACTTTGATATTATGATCCCC 57.979 40.000 0.00 0.00 0.00 4.81
549 550 8.324306 TGATCTGGACTTTGATATTATGATCCC 58.676 37.037 0.00 0.00 0.00 3.85
550 551 9.902684 ATGATCTGGACTTTGATATTATGATCC 57.097 33.333 0.00 0.00 0.00 3.36
552 553 9.175312 GCATGATCTGGACTTTGATATTATGAT 57.825 33.333 0.00 0.00 0.00 2.45
553 554 8.158789 TGCATGATCTGGACTTTGATATTATGA 58.841 33.333 0.00 0.00 0.00 2.15
554 555 8.331730 TGCATGATCTGGACTTTGATATTATG 57.668 34.615 0.00 0.00 0.00 1.90
555 556 8.957466 CATGCATGATCTGGACTTTGATATTAT 58.043 33.333 22.59 0.00 0.00 1.28
556 557 7.940688 ACATGCATGATCTGGACTTTGATATTA 59.059 33.333 32.75 0.00 0.00 0.98
557 558 6.776116 ACATGCATGATCTGGACTTTGATATT 59.224 34.615 32.75 0.57 0.00 1.28
558 559 6.304624 ACATGCATGATCTGGACTTTGATAT 58.695 36.000 32.75 0.95 0.00 1.63
559 560 5.687780 ACATGCATGATCTGGACTTTGATA 58.312 37.500 32.75 0.00 0.00 2.15
560 561 4.533815 ACATGCATGATCTGGACTTTGAT 58.466 39.130 32.75 2.07 0.00 2.57
561 562 3.943381 GACATGCATGATCTGGACTTTGA 59.057 43.478 32.75 0.00 0.00 2.69
562 563 3.692593 TGACATGCATGATCTGGACTTTG 59.307 43.478 32.75 3.42 0.00 2.77
563 564 3.959293 TGACATGCATGATCTGGACTTT 58.041 40.909 32.75 6.24 0.00 2.66
611 612 2.359107 CACGTGCCACATGGAGCT 60.359 61.111 0.82 0.00 37.39 4.09
741 759 3.173240 GACGTCGTGCTCGCCTTC 61.173 66.667 0.63 0.00 36.96 3.46
853 873 2.223249 CCGTAATTTCTGTGGGATTGCG 60.223 50.000 0.00 0.00 38.19 4.85
854 874 3.013921 TCCGTAATTTCTGTGGGATTGC 58.986 45.455 0.00 0.00 0.00 3.56
855 875 3.063452 CGTCCGTAATTTCTGTGGGATTG 59.937 47.826 0.00 0.00 0.00 2.67
857 877 2.901249 CGTCCGTAATTTCTGTGGGAT 58.099 47.619 0.00 0.00 0.00 3.85
859 879 0.725117 GCGTCCGTAATTTCTGTGGG 59.275 55.000 0.00 0.00 0.00 4.61
860 880 0.368907 CGCGTCCGTAATTTCTGTGG 59.631 55.000 0.00 0.00 0.00 4.17
888 908 0.323542 ACCACTACTCCTCCCACTCG 60.324 60.000 0.00 0.00 0.00 4.18
941 961 2.356135 GCCCGCAAAAACAGAGAGATA 58.644 47.619 0.00 0.00 0.00 1.98
942 962 1.168714 GCCCGCAAAAACAGAGAGAT 58.831 50.000 0.00 0.00 0.00 2.75
1093 1120 1.864082 GTAGAGGTAGTAGTCGGACGC 59.136 57.143 1.89 0.15 0.00 5.19
1239 1266 0.674895 AGCACTTGATGAACTCGGCC 60.675 55.000 0.00 0.00 0.00 6.13
1249 1276 1.516386 CGTCGCCGTAGCACTTGAT 60.516 57.895 0.00 0.00 39.83 2.57
1263 1290 1.142185 AGAAGATGCGCATGACGTCG 61.142 55.000 30.76 0.00 46.11 5.12
1344 1382 1.601166 AAAGGAAAAACGAGGGTCGG 58.399 50.000 0.86 0.00 45.59 4.79
1360 1401 3.273434 TCATCATCCGCCAAGAGAAAAG 58.727 45.455 0.00 0.00 0.00 2.27
1372 1413 0.939419 TTGCGCAGATTCATCATCCG 59.061 50.000 11.31 0.00 31.20 4.18
1397 1438 1.688811 TGGAACCCCAAATCTCCGG 59.311 57.895 0.00 0.00 40.09 5.14
1434 1475 2.745100 ATGCCTGTCAGCGCTGTG 60.745 61.111 34.70 24.35 34.65 3.66
1478 1523 5.989477 TCCTCCGAACATACAGATCAAAAT 58.011 37.500 0.00 0.00 0.00 1.82
1514 1563 2.587307 AGAACCCAGGCCATAAATTCCT 59.413 45.455 5.01 0.00 0.00 3.36
1532 1581 2.173782 TGTACAGGGTTTTGGAGCAGAA 59.826 45.455 0.00 0.00 0.00 3.02
1565 1614 4.405680 AGAAAACTGGGGGAAACTTTGAAG 59.594 41.667 0.00 0.00 0.00 3.02
1578 1627 0.535102 ACTGCGTGGAGAAAACTGGG 60.535 55.000 0.00 0.00 0.00 4.45
1580 1629 1.871080 AGACTGCGTGGAGAAAACTG 58.129 50.000 0.00 0.00 0.00 3.16
1582 1631 1.264288 CCAAGACTGCGTGGAGAAAAC 59.736 52.381 0.00 0.00 45.22 2.43
1619 1668 9.562408 TGTATTGTTTGGTCTTAGATACAACAA 57.438 29.630 14.02 14.02 0.00 2.83
1662 1711 4.954202 ACCATCTGCAGTGATCAATCAAAT 59.046 37.500 14.67 0.00 38.75 2.32
1707 1760 3.965026 CTCCCCCAGAGACGGCAGA 62.965 68.421 0.00 0.00 46.50 4.26
1878 1931 0.253044 GTATGAGCACCTCTGCCCAA 59.747 55.000 0.00 0.00 45.53 4.12
2035 2088 6.038603 TCCATCACTAGCAGCAAAACATAATC 59.961 38.462 0.00 0.00 0.00 1.75
2036 2089 5.887598 TCCATCACTAGCAGCAAAACATAAT 59.112 36.000 0.00 0.00 0.00 1.28
2041 2228 3.181493 CCATCCATCACTAGCAGCAAAAC 60.181 47.826 0.00 0.00 0.00 2.43
2067 2259 9.812347 AATCATCCAGCAACTCCATTTATTATA 57.188 29.630 0.00 0.00 0.00 0.98
2072 2264 4.098349 GCAATCATCCAGCAACTCCATTTA 59.902 41.667 0.00 0.00 0.00 1.40
2098 2290 2.268762 TTGGTGTCATGCAGCTAACA 57.731 45.000 16.47 0.60 45.23 2.41
2099 2291 3.855689 ATTTGGTGTCATGCAGCTAAC 57.144 42.857 16.47 0.00 45.23 2.34
2102 2294 3.379372 GTCATATTTGGTGTCATGCAGCT 59.621 43.478 16.47 0.00 45.23 4.24
2103 2295 3.379372 AGTCATATTTGGTGTCATGCAGC 59.621 43.478 10.98 10.98 45.22 5.25
2104 2296 6.682423 TTAGTCATATTTGGTGTCATGCAG 57.318 37.500 0.00 0.00 0.00 4.41
2105 2297 7.459795 TTTTAGTCATATTTGGTGTCATGCA 57.540 32.000 0.00 0.00 0.00 3.96
2106 2298 7.376866 CGATTTTAGTCATATTTGGTGTCATGC 59.623 37.037 0.00 0.00 0.00 4.06
2107 2299 7.857389 CCGATTTTAGTCATATTTGGTGTCATG 59.143 37.037 0.00 0.00 0.00 3.07
2108 2300 7.556275 ACCGATTTTAGTCATATTTGGTGTCAT 59.444 33.333 0.00 0.00 0.00 3.06
2109 2301 6.882140 ACCGATTTTAGTCATATTTGGTGTCA 59.118 34.615 0.00 0.00 0.00 3.58
2110 2302 7.316544 ACCGATTTTAGTCATATTTGGTGTC 57.683 36.000 0.00 0.00 0.00 3.67
2111 2303 7.281549 GGTACCGATTTTAGTCATATTTGGTGT 59.718 37.037 0.00 0.00 0.00 4.16
2112 2304 7.281324 TGGTACCGATTTTAGTCATATTTGGTG 59.719 37.037 7.57 0.00 0.00 4.17
2113 2305 7.340256 TGGTACCGATTTTAGTCATATTTGGT 58.660 34.615 7.57 0.00 0.00 3.67
2114 2306 7.795482 TGGTACCGATTTTAGTCATATTTGG 57.205 36.000 7.57 0.00 0.00 3.28
2115 2307 9.663904 CATTGGTACCGATTTTAGTCATATTTG 57.336 33.333 12.36 0.00 0.00 2.32
2116 2308 9.621629 TCATTGGTACCGATTTTAGTCATATTT 57.378 29.630 12.36 0.00 0.00 1.40
2117 2309 9.621629 TTCATTGGTACCGATTTTAGTCATATT 57.378 29.630 12.36 0.00 0.00 1.28
2118 2310 9.793259 ATTCATTGGTACCGATTTTAGTCATAT 57.207 29.630 12.36 0.00 0.00 1.78
2120 2312 9.793259 ATATTCATTGGTACCGATTTTAGTCAT 57.207 29.630 12.36 2.04 0.00 3.06
2121 2313 9.621629 AATATTCATTGGTACCGATTTTAGTCA 57.378 29.630 12.36 0.00 0.00 3.41
2126 2318 8.846211 CCACTAATATTCATTGGTACCGATTTT 58.154 33.333 12.36 3.02 33.93 1.82
2127 2319 7.447238 CCCACTAATATTCATTGGTACCGATTT 59.553 37.037 12.36 6.57 33.93 2.17
2128 2320 6.940298 CCCACTAATATTCATTGGTACCGATT 59.060 38.462 12.36 0.89 33.93 3.34
2129 2321 6.472887 CCCACTAATATTCATTGGTACCGAT 58.527 40.000 9.03 9.03 33.93 4.18
2130 2322 5.221762 CCCCACTAATATTCATTGGTACCGA 60.222 44.000 3.71 3.71 33.93 4.69
2131 2323 5.001232 CCCCACTAATATTCATTGGTACCG 58.999 45.833 7.57 0.00 33.93 4.02
2132 2324 5.073965 TCCCCCACTAATATTCATTGGTACC 59.926 44.000 4.43 4.43 33.93 3.34
2133 2325 6.195600 TCCCCCACTAATATTCATTGGTAC 57.804 41.667 0.00 0.00 33.93 3.34
2134 2326 5.222048 GCTCCCCCACTAATATTCATTGGTA 60.222 44.000 0.00 0.00 33.93 3.25
2135 2327 4.447762 GCTCCCCCACTAATATTCATTGGT 60.448 45.833 0.00 0.00 36.37 3.67
2136 2328 4.082125 GCTCCCCCACTAATATTCATTGG 58.918 47.826 0.00 0.00 0.00 3.16
2137 2329 4.763793 CAGCTCCCCCACTAATATTCATTG 59.236 45.833 0.00 0.00 0.00 2.82
2138 2330 4.751028 GCAGCTCCCCCACTAATATTCATT 60.751 45.833 0.00 0.00 0.00 2.57
2139 2331 3.245052 GCAGCTCCCCCACTAATATTCAT 60.245 47.826 0.00 0.00 0.00 2.57
2140 2332 2.106511 GCAGCTCCCCCACTAATATTCA 59.893 50.000 0.00 0.00 0.00 2.57
2141 2333 2.106511 TGCAGCTCCCCCACTAATATTC 59.893 50.000 0.00 0.00 0.00 1.75
2142 2334 2.135189 TGCAGCTCCCCCACTAATATT 58.865 47.619 0.00 0.00 0.00 1.28
2143 2335 1.819753 TGCAGCTCCCCCACTAATAT 58.180 50.000 0.00 0.00 0.00 1.28
2144 2336 1.421268 CATGCAGCTCCCCCACTAATA 59.579 52.381 0.00 0.00 0.00 0.98
2145 2337 0.184451 CATGCAGCTCCCCCACTAAT 59.816 55.000 0.00 0.00 0.00 1.73
2146 2338 1.609239 CATGCAGCTCCCCCACTAA 59.391 57.895 0.00 0.00 0.00 2.24
2147 2339 2.377810 CCATGCAGCTCCCCCACTA 61.378 63.158 0.00 0.00 0.00 2.74
2148 2340 3.736224 CCATGCAGCTCCCCCACT 61.736 66.667 0.00 0.00 0.00 4.00
2149 2341 4.828296 CCCATGCAGCTCCCCCAC 62.828 72.222 0.00 0.00 0.00 4.61
2151 2343 4.512914 GACCCATGCAGCTCCCCC 62.513 72.222 0.00 0.00 0.00 5.40
2152 2344 1.422161 ATAGACCCATGCAGCTCCCC 61.422 60.000 0.00 0.00 0.00 4.81
2153 2345 0.250640 CATAGACCCATGCAGCTCCC 60.251 60.000 0.00 0.00 0.00 4.30
2154 2346 0.471617 ACATAGACCCATGCAGCTCC 59.528 55.000 0.00 0.00 0.00 4.70
2155 2347 1.415659 AGACATAGACCCATGCAGCTC 59.584 52.381 0.00 0.00 0.00 4.09
2260 2776 7.941238 CCAGGTTCTTCCATTCATATAGATGTT 59.059 37.037 0.00 0.00 39.02 2.71
2262 2778 7.456725 ACCAGGTTCTTCCATTCATATAGATG 58.543 38.462 0.00 0.00 39.02 2.90
2264 2780 8.561536 TTACCAGGTTCTTCCATTCATATAGA 57.438 34.615 0.00 0.00 39.02 1.98
2265 2781 9.224267 CATTACCAGGTTCTTCCATTCATATAG 57.776 37.037 0.00 0.00 39.02 1.31
2336 2852 8.515473 AAAAACCGAATAAATGTAGAGTTTGC 57.485 30.769 0.00 0.00 0.00 3.68
2440 2957 9.131791 ACTTGTAGGTTGTATCTTTTTCACAAT 57.868 29.630 0.00 0.00 34.89 2.71
2441 2958 8.514330 ACTTGTAGGTTGTATCTTTTTCACAA 57.486 30.769 0.00 0.00 0.00 3.33
2443 2960 8.379457 AGACTTGTAGGTTGTATCTTTTTCAC 57.621 34.615 0.00 0.00 0.00 3.18
2455 2973 8.608844 ACTATTTCTTCAAGACTTGTAGGTTG 57.391 34.615 18.45 10.38 0.00 3.77
2465 2983 9.813080 GTTCACACATTACTATTTCTTCAAGAC 57.187 33.333 0.00 0.00 0.00 3.01
2479 2997 7.416154 TGTAACTTAGCTGTTCACACATTAC 57.584 36.000 0.00 0.00 30.39 1.89
2499 3019 6.000246 TGGATTAGATGTGGCATCTTGTAA 58.000 37.500 15.57 6.20 0.00 2.41
2524 3044 7.422399 GTCATAGCAACAACTGTTCCTAAAAA 58.578 34.615 0.00 0.00 32.62 1.94
2533 3053 3.141398 CACTGGTCATAGCAACAACTGT 58.859 45.455 0.00 0.00 0.00 3.55
2534 3054 3.187227 GTCACTGGTCATAGCAACAACTG 59.813 47.826 0.00 0.00 0.00 3.16
2535 3055 3.181455 TGTCACTGGTCATAGCAACAACT 60.181 43.478 0.00 0.00 0.00 3.16
2556 3095 2.828520 AGTGGAGTAGTCATGGACAGTG 59.171 50.000 0.00 0.00 34.60 3.66
2589 3140 6.771749 TGGGAAATCAAAACTGCAAAATGAAT 59.228 30.769 0.00 0.00 0.00 2.57
2958 3523 4.098914 AGTCACCTTAACAGCCAATTCA 57.901 40.909 0.00 0.00 0.00 2.57
3044 3612 1.507141 CTTTCTTGCCGTCGCTTGGT 61.507 55.000 0.00 0.00 35.36 3.67
3057 3625 1.416401 TCCGTCAGCACCTTCTTTCTT 59.584 47.619 0.00 0.00 0.00 2.52
3071 3639 2.017138 TTGCATAAGCGAATCCGTCA 57.983 45.000 0.00 0.00 46.23 4.35
3086 3654 4.922206 AGACCATCTAATCCAACTTTGCA 58.078 39.130 0.00 0.00 0.00 4.08
3152 3720 6.523840 ACACAACTATTTTCACAATGCCATT 58.476 32.000 0.00 0.00 0.00 3.16
3185 3753 8.621532 AATCACATAACAAGAACTACACATGT 57.378 30.769 0.00 0.00 0.00 3.21
3239 3807 3.437049 GTCAGCATAACAAGTTCAGGGAC 59.563 47.826 0.00 0.00 0.00 4.46
3273 3841 4.576330 AGCTGCTTAAAGGTTATCTGGT 57.424 40.909 0.00 0.00 0.00 4.00
3491 4064 9.747898 TGTCAAATTTGGTAGTATGTCCTATTT 57.252 29.630 17.90 0.00 0.00 1.40
3571 4149 7.133891 AGCGCCTTATATTAATGCTTACAAG 57.866 36.000 2.29 0.00 0.00 3.16
3590 4168 3.118629 TGGATCTATATGAATGGAGCGCC 60.119 47.826 2.29 0.00 30.33 6.53
3591 4169 3.868077 GTGGATCTATATGAATGGAGCGC 59.132 47.826 0.00 0.00 30.33 5.92
3648 4231 8.232913 ACCAAGTGTTTATCTGTAAATTGTGT 57.767 30.769 0.00 0.00 32.76 3.72
3739 4322 5.430417 TGGTTATTGAATGGCTTCTAGGGTA 59.570 40.000 0.00 0.00 32.29 3.69
3765 4348 6.322491 GTTGTTTCTGCAACTTGTTAGTCTT 58.678 36.000 0.00 0.00 43.74 3.01
3798 4381 8.293867 CGTGTTTTTGAATGTCTAAGGGATTAA 58.706 33.333 0.00 0.00 0.00 1.40
3799 4382 7.662258 TCGTGTTTTTGAATGTCTAAGGGATTA 59.338 33.333 0.00 0.00 0.00 1.75
3803 4386 5.449304 GTCGTGTTTTTGAATGTCTAAGGG 58.551 41.667 0.00 0.00 0.00 3.95
3806 4389 4.034163 TGCGTCGTGTTTTTGAATGTCTAA 59.966 37.500 0.00 0.00 0.00 2.10
3808 4391 2.353269 TGCGTCGTGTTTTTGAATGTCT 59.647 40.909 0.00 0.00 0.00 3.41
3813 4396 3.206348 CGTGCGTCGTGTTTTTGAA 57.794 47.368 0.00 0.00 34.52 2.69
3836 4419 4.869861 TCGATCGTGTTGTGAATCATCATT 59.130 37.500 15.94 0.00 38.01 2.57
3844 4427 4.084066 CCTTTTGATCGATCGTGTTGTGAA 60.084 41.667 20.03 3.85 0.00 3.18
3857 4440 3.999663 AGCTCTTTCAGTCCTTTTGATCG 59.000 43.478 0.00 0.00 0.00 3.69
3881 4472 2.034305 GCCGATACTGAACGACTACCAT 59.966 50.000 0.00 0.00 0.00 3.55
3940 4531 2.394708 CGTGGTCATATGGCTTACGAG 58.605 52.381 23.62 4.58 34.19 4.18
3988 4579 2.034687 GACTGCATGGGTGGTGCT 59.965 61.111 0.00 0.00 42.92 4.40
3991 4582 2.032528 CGTGACTGCATGGGTGGT 59.967 61.111 0.00 0.00 0.00 4.16
4064 4655 3.059982 CGGTGGTGCTCTCTTCCA 58.940 61.111 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.