AutoCloner

Multiple sequence alignment - TraesCS1A01G204300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1A01G204300	chr1A	100.000	6538	0	0	1	6538	366274751	366268214	0.000000e+00	12074
1	TraesCS1A01G204300	chr1A	95.062	243	11	1	1	242	496849625	496849383	1.330000e-101	381
2	TraesCS1A01G204300	chr1A	87.562	201	19	6	625	822	84438306	84438503	1.830000e-55	228
3	TraesCS1A01G204300	chr1A	87.958	191	16	5	634	819	435623792	435623604	1.100000e-52	219
4	TraesCS1A01G204300	chr1A	91.870	123	10	0	3691	3813	82078238	82078360	8.720000e-39	172
5	TraesCS1A01G204300	chr1A	88.356	146	10	5	5618	5758	366268996	366268853	1.130000e-37	169
6	TraesCS1A01G204300	chr1A	88.356	146	10	5	5756	5899	366269134	366268994	1.130000e-37	169
7	TraesCS1A01G204300	chr1D	95.332	2742	84	14	3812	6538	293909417	293906705	0.000000e+00	4314
8	TraesCS1A01G204300	chr1D	88.948	2461	124	44	794	3200	293912349	293909983	0.000000e+00	2902
9	TraesCS1A01G204300	chr1D	95.066	527	17	6	3187	3711	293909932	293909413	0.000000e+00	821
10	TraesCS1A01G204300	chr1D	91.400	407	14	9	244	633	293912750	293912348	7.460000e-149	538
11	TraesCS1A01G204300	chr1D	90.411	146	8	4	5756	5899	293907629	293907488	3.110000e-43	187
12	TraesCS1A01G204300	chr1B	94.412	2702	92	22	3855	6538	395248915	395246255	0.000000e+00	4098
13	TraesCS1A01G204300	chr1B	94.322	2448	80	22	4109	6538	395258167	395255761	0.000000e+00	3696
14	TraesCS1A01G204300	chr1B	89.594	2806	140	58	973	3711	395251779	395249059	0.000000e+00	3424
15	TraesCS1A01G204300	chr1B	91.133	406	17	8	244	631	395252598	395252194	3.470000e-147	532
16	TraesCS1A01G204300	chr1B	97.576	165	3	1	632	795	351535332	351535496	1.390000e-71	281
17	TraesCS1A01G204300	chr1B	96.552	116	3	1	3706	3821	632206598	632206484	2.410000e-44	191
18	TraesCS1A01G204300	chr1B	90.698	129	4	2	795	923	395252192	395252072	1.460000e-36	165
19	TraesCS1A01G204300	chr1B	86.897	145	7	8	5756	5899	395247175	395247042	1.140000e-32	152
20	TraesCS1A01G204300	chr1B	86.897	145	7	8	5756	5899	395256681	395256548	1.140000e-32	152
21	TraesCS1A01G204300	chrUn	94.404	2448	78	22	4109	6538	296013110	296010704	0.000000e+00	3707
22	TraesCS1A01G204300	chrUn	97.297	111	3	0	3704	3814	218481709	218481599	8.650000e-44	189
23	TraesCS1A01G204300	chrUn	86.897	145	7	8	5756	5899	296011624	296011491	1.140000e-32	152
24	TraesCS1A01G204300	chr2A	95.102	245	11	1	1	244	672789464	672789220	1.030000e-102	385
25	TraesCS1A01G204300	chr2A	94.958	238	11	1	1	237	373501651	373501888	8.010000e-99	372
26	TraesCS1A01G204300	chr5A	94.355	248	13	1	1	247	680361247	680361494	4.780000e-101	379
27	TraesCS1A01G204300	chr5A	94.979	239	11	1	1	238	4982531	4982769	2.230000e-99	374
28	TraesCS1A01G204300	chr5A	87.671	292	33	3	3866	4157	610458905	610459193	2.920000e-88	337
29	TraesCS1A01G204300	chr4A	95.041	242	11	1	2	242	601258553	601258312	4.780000e-101	379
30	TraesCS1A01G204300	chr4A	94.628	242	12	1	1	241	640211753	640211512	2.230000e-99	374
31	TraesCS1A01G204300	chr4A	94.215	242	13	1	2	242	216015556	216015315	1.040000e-97	368
32	TraesCS1A01G204300	chr4A	90.769	130	12	0	3686	3815	557549772	557549901	2.420000e-39	174
33	TraesCS1A01G204300	chr3A	93.902	246	14	1	1	245	89665186	89664941	2.880000e-98	370
34	TraesCS1A01G204300	chr3A	89.418	189	15	5	632	819	677843611	677843427	3.940000e-57	233
35	TraesCS1A01G204300	chr3A	88.830	188	18	3	632	819	677842938	677842754	1.830000e-55	228
36	TraesCS1A01G204300	chr3A	99.074	108	1	0	3707	3814	399421550	399421657	1.860000e-45	195
37	TraesCS1A01G204300	chr3A	98.165	109	2	0	3707	3815	606828483	606828375	2.410000e-44	191
38	TraesCS1A01G204300	chr5B	87.107	318	34	5	3841	4157	603454024	603454335	2.900000e-93	353
39	TraesCS1A01G204300	chr5B	91.538	130	9	2	3686	3814	278886859	278886987	1.870000e-40	178
40	TraesCS1A01G204300	chr6B	99.401	167	1	0	629	795	332417195	332417029	2.960000e-78	303
41	TraesCS1A01G204300	chr6B	96.471	170	6	0	631	800	575317559	575317728	1.390000e-71	281
42	TraesCS1A01G204300	chr6B	86.290	124	17	0	4186	4309	558825435	558825312	1.140000e-27	135
43	TraesCS1A01G204300	chr6B	86.290	124	17	0	4186	4309	558903791	558903668	1.140000e-27	135
44	TraesCS1A01G204300	chr6B	85.484	124	18	0	4186	4309	558742852	558742729	5.320000e-26	130
45	TraesCS1A01G204300	chr3B	97.647	170	3	1	631	800	748763169	748763337	2.310000e-74	291
46	TraesCS1A01G204300	chr3B	98.171	164	3	0	632	795	636250011	636249848	2.980000e-73	287
47	TraesCS1A01G204300	chr3B	94.475	181	8	2	617	796	52744121	52743942	1.800000e-70	278
48	TraesCS1A01G204300	chr6A	97.619	168	4	0	628	795	143704711	143704544	8.290000e-74	289
49	TraesCS1A01G204300	chr6A	95.954	173	7	0	627	799	537229486	537229314	1.390000e-71	281
50	TraesCS1A01G204300	chr4B	95.977	174	6	1	631	804	518678140	518678312	1.390000e-71	281
51	TraesCS1A01G204300	chr4B	84.190	253	37	3	3866	4117	624160885	624160635	6.550000e-60	243
52	TraesCS1A01G204300	chr7B	90.256	195	13	5	628	820	747167620	747167430	3.910000e-62	250
53	TraesCS1A01G204300	chr2D	87.245	196	22	3	626	819	517001576	517001770	3.070000e-53	220
54	TraesCS1A01G204300	chr3D	87.958	191	16	7	634	819	208253654	208253842	1.100000e-52	219
55	TraesCS1A01G204300	chr3D	87.958	191	16	5	634	819	434435765	434435577	1.100000e-52	219
56	TraesCS1A01G204300	chr7D	87.895	190	16	7	635	819	145026479	145026666	3.970000e-52	217
57	TraesCS1A01G204300	chr7D	96.522	115	4	0	3707	3821	4020212	4020098	2.410000e-44	191
58	TraesCS1A01G204300	chr7D	92.969	128	7	2	3697	3823	605904267	605904141	1.120000e-42	185
59	TraesCS1A01G204300	chr2B	82.258	124	22	0	4186	4309	746033838	746033961	2.490000e-19	108

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1A01G204300	chr1A	366268214	366274751	6537	True	12074.000000	12074	100.000000	1	6538	1	chr1A.!!$R1	6537
1	TraesCS1A01G204300	chr1D	293906705	293912750	6045	True	1752.400000	4314	92.231400	244	6538	5	chr1D.!!$R1	6294
2	TraesCS1A01G204300	chr1B	395246255	395258167	11912	True	1745.571429	4098	90.564714	244	6538	7	chr1B.!!$R2	6294
3	TraesCS1A01G204300	chrUn	296010704	296013110	2406	True	1929.500000	3707	90.650500	4109	6538	2	chrUn.!!$R2	2429
4	TraesCS1A01G204300	chr3A	677842754	677843611	857	True	230.500000	233	89.124000	632	819	2	chr3A.!!$R3	187

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
985	6577	0.100861	GAGAGGGGTTCATCGTCGAC	59.899	60.000	5.18	5.18	0.00	4.20	F
1544	7155	0.243095	GCTTCCTGCCTTTGCTTCTG	59.757	55.000	0.00	0.00	38.71	3.02	F
1593	7204	0.539051	CTCCACCACAGTCCCATCTC	59.461	60.000	0.00	0.00	0.00	2.75	F
2977	8652	0.100682	CTCAGCTGGATGCAATGCAC	59.899	55.000	11.23	4.58	40.85	4.57	F
2995	8674	0.759346	ACGGGTTGCTCTTTCTCTGT	59.241	50.000	0.00	0.00	0.00	3.41	F
3123	8802	0.989602	TCCTCTCCGTGTCCTCTACA	59.010	55.000	0.00	0.00	35.06	2.74	F
3475	9221	1.205655	CTCATTGGCTCAACGGAGAGA	59.794	52.381	10.15	0.00	44.26	3.10	F
3745	9535	1.645034	ACTCGTCGCAGAAATGGATG	58.355	50.000	0.00	0.00	39.69	3.51	F
4432	10334	2.026879	GCCTCTCTTAGCGCCGAG	59.973	66.667	2.29	8.29	0.00	4.63	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
2197	7850	0.238553	GGCAAAGCCTTCACGAAGAC	59.761	55.000	8.38	46.69	3.01	R
2906	8576	0.321671	TGAAAGTTGGCGAGAGAGGG	59.678	55.000	0.00	0.00	4.30	R
3234	8980	1.049289	GGACGAAGGCCCTCAGGTAT	61.049	60.000	0.00	34.57	2.73	R
3795	9585	0.038744	AGTACTCCCTCCGTTCCGAA	59.961	55.000	0.00	0.00	4.30	R
3796	9586	0.393537	GAGTACTCCCTCCGTTCCGA	60.394	60.000	12.13	0.00	4.55	R
4351	10253	1.608590	CCGCACCAAGTGAAATCAAGT	59.391	47.619	0.00	35.23	3.16	R
4704	10606	2.290514	ACAGCTTGCAGCAAGATAAGGA	60.291	45.455	34.93	45.56	3.36	R
5259	11164	3.097877	CCTTTGAAGTTGAAAGGTGCC	57.902	47.619	21.81	43.13	5.01	R
5780	11686	1.338674	CCCTATTGTCAACTGCACGGA	60.339	52.381	0.00	0.00	4.69	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
25	26	8.439993	GGAAGTAGATTTTTACTCTCATTCCC	57.560	38.462	0.00	0.00	34.48	3.97
28	29	9.454859	AAGTAGATTTTTACTCTCATTCCCTTG	57.545	33.333	0.00	0.00	32.84	3.61
29	30	8.606830	AGTAGATTTTTACTCTCATTCCCTTGT	58.393	33.333	0.00	0.00	0.00	3.16
30	31	9.232473	GTAGATTTTTACTCTCATTCCCTTGTT	57.768	33.333	0.00	0.00	0.00	2.83
31	32	8.712228	AGATTTTTACTCTCATTCCCTTGTTT	57.288	30.769	0.00	0.00	0.00	2.83
32	33	8.579863	AGATTTTTACTCTCATTCCCTTGTTTG	58.420	33.333	0.00	0.00	0.00	2.93
33	34	6.648879	TTTTACTCTCATTCCCTTGTTTGG	57.351	37.500	0.00	0.00	0.00	3.28
34	35	2.519013	ACTCTCATTCCCTTGTTTGGC	58.481	47.619	0.00	0.00	0.00	4.52
35	36	2.158475	ACTCTCATTCCCTTGTTTGGCA	60.158	45.455	0.00	0.00	0.00	4.92
36	37	3.094572	CTCTCATTCCCTTGTTTGGCAT	58.905	45.455	0.00	0.00	0.00	4.40
37	38	4.263905	ACTCTCATTCCCTTGTTTGGCATA	60.264	41.667	0.00	0.00	0.00	3.14
39	40	4.646040	TCTCATTCCCTTGTTTGGCATATG	59.354	41.667	0.00	0.00	0.00	1.78
40	41	4.608269	TCATTCCCTTGTTTGGCATATGA	58.392	39.130	6.97	0.00	0.00	2.15
41	42	5.210430	TCATTCCCTTGTTTGGCATATGAT	58.790	37.500	6.97	0.00	0.00	2.45
42	43	5.069383	TCATTCCCTTGTTTGGCATATGATG	59.931	40.000	6.97	0.00	0.00	3.07
46	47	3.705579	CCTTGTTTGGCATATGATGGGAA	59.294	43.478	6.97	0.00	0.00	3.97
47	48	4.345837	CCTTGTTTGGCATATGATGGGAAT	59.654	41.667	6.97	0.00	0.00	3.01
49	50	5.279255	TGTTTGGCATATGATGGGAATTG	57.721	39.130	6.97	0.00	0.00	2.32
50	51	4.961099	TGTTTGGCATATGATGGGAATTGA	59.039	37.500	6.97	0.00	0.00	2.57
51	52	5.163426	TGTTTGGCATATGATGGGAATTGAC	60.163	40.000	6.97	0.00	0.00	3.18
52	53	3.148412	TGGCATATGATGGGAATTGACG	58.852	45.455	6.97	0.00	0.00	4.35
53	54	3.149196	GGCATATGATGGGAATTGACGT	58.851	45.455	6.97	0.00	0.00	4.34
54	55	3.058016	GGCATATGATGGGAATTGACGTG	60.058	47.826	6.97	0.00	0.00	4.49
55	56	3.058016	GCATATGATGGGAATTGACGTGG	60.058	47.826	6.97	0.00	0.00	4.94
56	57	2.057137	ATGATGGGAATTGACGTGGG	57.943	50.000	0.00	0.00	0.00	4.61
57	58	0.988063	TGATGGGAATTGACGTGGGA	59.012	50.000	0.00	0.00	0.00	4.37
58	59	1.563879	TGATGGGAATTGACGTGGGAT	59.436	47.619	0.00	0.00	0.00	3.85
59	60	2.774809	TGATGGGAATTGACGTGGGATA	59.225	45.455	0.00	0.00	0.00	2.59
60	61	3.201045	TGATGGGAATTGACGTGGGATAA	59.799	43.478	0.00	0.00	0.00	1.75
61	62	3.722908	TGGGAATTGACGTGGGATAAA	57.277	42.857	0.00	0.00	0.00	1.40
62	63	4.035612	TGGGAATTGACGTGGGATAAAA	57.964	40.909	0.00	0.00	0.00	1.52
63	64	3.759618	TGGGAATTGACGTGGGATAAAAC	59.240	43.478	0.00	0.00	0.00	2.43
64	65	4.014406	GGGAATTGACGTGGGATAAAACT	58.986	43.478	0.00	0.00	0.00	2.66
68	69	2.695359	TGACGTGGGATAAAACTCTGC	58.305	47.619	0.00	0.00	0.00	4.26
70	71	2.930682	GACGTGGGATAAAACTCTGCTC	59.069	50.000	0.00	0.00	0.00	4.26
71	72	2.301870	ACGTGGGATAAAACTCTGCTCA	59.698	45.455	0.00	0.00	0.00	4.26
72	73	2.673368	CGTGGGATAAAACTCTGCTCAC	59.327	50.000	0.00	0.00	0.00	3.51
73	74	2.673368	GTGGGATAAAACTCTGCTCACG	59.327	50.000	0.00	0.00	0.00	4.35
74	75	2.565391	TGGGATAAAACTCTGCTCACGA	59.435	45.455	0.00	0.00	0.00	4.35
75	76	3.007506	TGGGATAAAACTCTGCTCACGAA	59.992	43.478	0.00	0.00	0.00	3.85
78	79	5.815740	GGGATAAAACTCTGCTCACGAATTA	59.184	40.000	0.00	0.00	0.00	1.40
79	80	6.315393	GGGATAAAACTCTGCTCACGAATTAA	59.685	38.462	0.00	0.00	0.00	1.40
80	81	7.180748	GGATAAAACTCTGCTCACGAATTAAC	58.819	38.462	0.00	0.00	0.00	2.01
81	82	7.148474	GGATAAAACTCTGCTCACGAATTAACA	60.148	37.037	0.00	0.00	0.00	2.41
82	83	5.597813	AAACTCTGCTCACGAATTAACAG	57.402	39.130	0.00	0.00	0.00	3.16
83	84	3.589988	ACTCTGCTCACGAATTAACAGG	58.410	45.455	0.00	0.00	0.00	4.00
84	85	2.932614	CTCTGCTCACGAATTAACAGGG	59.067	50.000	0.00	0.00	0.00	4.45
87	88	4.161565	TCTGCTCACGAATTAACAGGGTAT	59.838	41.667	0.00	0.00	0.00	2.73
88	89	4.439057	TGCTCACGAATTAACAGGGTATC	58.561	43.478	0.00	0.00	0.00	2.24
90	91	4.377897	CTCACGAATTAACAGGGTATCCC	58.622	47.826	0.00	0.00	45.90	3.85
105	106	2.307153	TCCCCTGGGAAGAAATCGG	58.693	57.895	16.20	0.00	42.05	4.18
106	107	0.549169	TCCCCTGGGAAGAAATCGGT	60.549	55.000	16.20	0.00	42.05	4.69
107	108	0.394352	CCCCTGGGAAGAAATCGGTG	60.394	60.000	16.20	0.00	37.50	4.94
109	110	0.394352	CCTGGGAAGAAATCGGTGGG	60.394	60.000	0.00	0.00	0.00	4.61
111	112	1.004277	CTGGGAAGAAATCGGTGGGAA	59.996	52.381	0.00	0.00	0.00	3.97
112	113	1.638589	TGGGAAGAAATCGGTGGGAAT	59.361	47.619	0.00	0.00	0.00	3.01
113	114	2.042433	TGGGAAGAAATCGGTGGGAATT	59.958	45.455	0.00	0.00	0.00	2.17
114	115	2.427095	GGGAAGAAATCGGTGGGAATTG	59.573	50.000	0.00	0.00	0.00	2.32
115	116	2.427095	GGAAGAAATCGGTGGGAATTGG	59.573	50.000	0.00	0.00	0.00	3.16
116	117	2.899303	AGAAATCGGTGGGAATTGGT	57.101	45.000	0.00	0.00	0.00	3.67
117	118	3.169512	AGAAATCGGTGGGAATTGGTT	57.830	42.857	0.00	0.00	0.00	3.67
121	122	2.668144	TCGGTGGGAATTGGTTTTCT	57.332	45.000	0.00	0.00	0.00	2.52
122	123	2.510613	TCGGTGGGAATTGGTTTTCTC	58.489	47.619	0.00	0.00	0.00	2.87
123	124	2.158593	TCGGTGGGAATTGGTTTTCTCA	60.159	45.455	0.00	0.00	33.72	3.27
124	125	2.625790	CGGTGGGAATTGGTTTTCTCAA	59.374	45.455	0.00	0.00	37.82	3.02
125	126	3.552068	CGGTGGGAATTGGTTTTCTCAAC	60.552	47.826	0.00	0.00	39.89	3.18
127	128	4.262036	GGTGGGAATTGGTTTTCTCAACTC	60.262	45.833	0.00	0.00	40.09	3.01
131	132	4.021981	GGAATTGGTTTTCTCAACTCCCAG	60.022	45.833	0.00	0.00	35.27	4.45
132	133	3.662759	TTGGTTTTCTCAACTCCCAGT	57.337	42.857	0.00	0.00	0.00	4.00
133	134	3.208747	TGGTTTTCTCAACTCCCAGTC	57.791	47.619	0.00	0.00	0.00	3.51
134	135	2.158667	TGGTTTTCTCAACTCCCAGTCC	60.159	50.000	0.00	0.00	0.00	3.85
137	138	0.193574	TTCTCAACTCCCAGTCCCCT	59.806	55.000	0.00	0.00	0.00	4.79
138	139	0.193574	TCTCAACTCCCAGTCCCCTT	59.806	55.000	0.00	0.00	0.00	3.95
139	140	0.615850	CTCAACTCCCAGTCCCCTTC	59.384	60.000	0.00	0.00	0.00	3.46
140	141	0.840722	TCAACTCCCAGTCCCCTTCC	60.841	60.000	0.00	0.00	0.00	3.46
141	142	1.133809	CAACTCCCAGTCCCCTTCCA	61.134	60.000	0.00	0.00	0.00	3.53
142	143	1.134438	AACTCCCAGTCCCCTTCCAC	61.134	60.000	0.00	0.00	0.00	4.02
143	144	1.229658	CTCCCAGTCCCCTTCCACT	60.230	63.158	0.00	0.00	0.00	4.00
147	148	1.708551	CCCAGTCCCCTTCCACTTAAA	59.291	52.381	0.00	0.00	0.00	1.52
148	149	2.554564	CCCAGTCCCCTTCCACTTAAAC	60.555	54.545	0.00	0.00	0.00	2.01
150	151	3.559384	CCAGTCCCCTTCCACTTAAACTC	60.559	52.174	0.00	0.00	0.00	3.01
151	152	2.643304	AGTCCCCTTCCACTTAAACTCC	59.357	50.000	0.00	0.00	0.00	3.85
152	153	1.990327	TCCCCTTCCACTTAAACTCCC	59.010	52.381	0.00	0.00	0.00	4.30
153	154	1.708551	CCCCTTCCACTTAAACTCCCA	59.291	52.381	0.00	0.00	0.00	4.37
154	155	2.311841	CCCCTTCCACTTAAACTCCCAT	59.688	50.000	0.00	0.00	0.00	4.00
156	157	4.017126	CCCTTCCACTTAAACTCCCATTC	58.983	47.826	0.00	0.00	0.00	2.67
157	158	4.017126	CCTTCCACTTAAACTCCCATTCC	58.983	47.826	0.00	0.00	0.00	3.01
158	159	3.732048	TCCACTTAAACTCCCATTCCC	57.268	47.619	0.00	0.00	0.00	3.97
160	161	3.265995	TCCACTTAAACTCCCATTCCCTC	59.734	47.826	0.00	0.00	0.00	4.30
162	163	4.473559	CCACTTAAACTCCCATTCCCTCTA	59.526	45.833	0.00	0.00	0.00	2.43
163	164	5.045140	CCACTTAAACTCCCATTCCCTCTAA	60.045	44.000	0.00	0.00	0.00	2.10
164	165	6.353951	CCACTTAAACTCCCATTCCCTCTAAT	60.354	42.308	0.00	0.00	0.00	1.73
165	166	7.119387	CACTTAAACTCCCATTCCCTCTAATT	58.881	38.462	0.00	0.00	0.00	1.40
167	168	8.842764	ACTTAAACTCCCATTCCCTCTAATTAA	58.157	33.333	0.00	0.00	0.00	1.40
168	169	9.695155	CTTAAACTCCCATTCCCTCTAATTAAA	57.305	33.333	0.00	0.00	0.00	1.52
169	170	7.956328	AAACTCCCATTCCCTCTAATTAAAC	57.044	36.000	0.00	0.00	0.00	2.01
170	171	6.652205	ACTCCCATTCCCTCTAATTAAACA	57.348	37.500	0.00	0.00	0.00	2.83
171	172	6.663734	ACTCCCATTCCCTCTAATTAAACAG	58.336	40.000	0.00	0.00	0.00	3.16
172	173	6.217693	ACTCCCATTCCCTCTAATTAAACAGT	59.782	38.462	0.00	0.00	0.00	3.55
176	177	7.561356	CCCATTCCCTCTAATTAAACAGTGAAT	59.439	37.037	0.00	0.00	0.00	2.57
193	194	8.349568	ACAGTGAATTTTTAATCTCCTTACCC	57.650	34.615	0.00	0.00	0.00	3.69
194	195	7.396339	ACAGTGAATTTTTAATCTCCTTACCCC	59.604	37.037	0.00	0.00	0.00	4.95
198	199	8.174085	TGAATTTTTAATCTCCTTACCCCTCAA	58.826	33.333	0.00	0.00	0.00	3.02
199	200	7.956328	ATTTTTAATCTCCTTACCCCTCAAC	57.044	36.000	0.00	0.00	0.00	3.18
201	202	5.952347	TTAATCTCCTTACCCCTCAACTC	57.048	43.478	0.00	0.00	0.00	3.01
202	203	2.249309	TCTCCTTACCCCTCAACTCC	57.751	55.000	0.00	0.00	0.00	3.85
205	206	1.082194	TCCTTACCCCTCAACTCCCAT	59.918	52.381	0.00	0.00	0.00	4.00
207	208	2.092375	CCTTACCCCTCAACTCCCATTC	60.092	54.545	0.00	0.00	0.00	2.67
208	209	1.591768	TACCCCTCAACTCCCATTCC	58.408	55.000	0.00	0.00	0.00	3.01
209	210	1.214992	ACCCCTCAACTCCCATTCCC	61.215	60.000	0.00	0.00	0.00	3.97
210	211	1.615262	CCCTCAACTCCCATTCCCC	59.385	63.158	0.00	0.00	0.00	4.81
211	212	1.224592	CCTCAACTCCCATTCCCCG	59.775	63.158	0.00	0.00	0.00	5.73
212	213	1.562672	CCTCAACTCCCATTCCCCGT	61.563	60.000	0.00	0.00	0.00	5.28
215	216	0.107654	CAACTCCCATTCCCCGTCTC	60.108	60.000	0.00	0.00	0.00	3.36
216	217	0.252742	AACTCCCATTCCCCGTCTCT	60.253	55.000	0.00	0.00	0.00	3.10
219	220	2.330216	CTCCCATTCCCCGTCTCTAAT	58.670	52.381	0.00	0.00	0.00	1.73
220	221	2.706190	CTCCCATTCCCCGTCTCTAATT	59.294	50.000	0.00	0.00	0.00	1.40
221	222	2.704065	TCCCATTCCCCGTCTCTAATTC	59.296	50.000	0.00	0.00	0.00	2.17
223	224	2.224548	CCATTCCCCGTCTCTAATTCCC	60.225	54.545	0.00	0.00	0.00	3.97
224	225	1.503800	TTCCCCGTCTCTAATTCCCC	58.496	55.000	0.00	0.00	0.00	4.81
225	226	0.640495	TCCCCGTCTCTAATTCCCCT	59.360	55.000	0.00	0.00	0.00	4.79
226	227	0.759346	CCCCGTCTCTAATTCCCCTG	59.241	60.000	0.00	0.00	0.00	4.45
228	229	2.116238	CCCGTCTCTAATTCCCCTGAA	58.884	52.381	0.00	0.00	34.33	3.02
229	230	2.158943	CCCGTCTCTAATTCCCCTGAAC	60.159	54.545	0.00	0.00	32.13	3.18
230	231	2.158943	CCGTCTCTAATTCCCCTGAACC	60.159	54.545	0.00	0.00	32.13	3.62
232	233	3.055385	CGTCTCTAATTCCCCTGAACCAA	60.055	47.826	0.00	0.00	32.13	3.67
233	234	4.564821	CGTCTCTAATTCCCCTGAACCAAA	60.565	45.833	0.00	0.00	32.13	3.28
234	235	4.700692	GTCTCTAATTCCCCTGAACCAAAC	59.299	45.833	0.00	0.00	32.13	2.93
235	236	4.352595	TCTCTAATTCCCCTGAACCAAACA	59.647	41.667	0.00	0.00	32.13	2.83
238	239	0.256464	TTCCCCTGAACCAAACACGT	59.744	50.000	0.00	0.00	0.00	4.49
240	241	0.383949	CCCCTGAACCAAACACGTTG	59.616	55.000	0.00	0.00	36.94	4.10
241	242	1.099689	CCCTGAACCAAACACGTTGT	58.900	50.000	0.00	0.00	35.23	3.32
242	243	1.202245	CCCTGAACCAAACACGTTGTG	60.202	52.381	0.00	0.00	39.75	3.33
256	5584	3.069980	TTGTGGGTGCGCGCTTTTT	62.070	52.632	33.29	0.00	0.00	1.94
260	5588	3.397317	GGTGCGCGCTTTTTGCTG	61.397	61.111	33.29	0.00	40.11	4.41
269	5597	2.099756	GCGCTTTTTGCTGGAGGAATAT	59.900	45.455	0.00	0.00	40.11	1.28
296	5624	4.075963	TGTAGCGTTTTAGGACTTTGGT	57.924	40.909	0.00	0.00	0.00	3.67
358	5688	3.081061	ACCATTGAAGCGTATGAAAGCA	58.919	40.909	0.00	0.00	35.48	3.91
416	5746	1.336795	CCAACCAAACCGCCTTTCATC	60.337	52.381	0.00	0.00	0.00	2.92
425	5761	2.073816	CCGCCTTTCATCTTGTTACGT	58.926	47.619	0.00	0.00	0.00	3.57
426	5762	3.255725	CCGCCTTTCATCTTGTTACGTA	58.744	45.455	0.00	0.00	0.00	3.57
427	5763	3.061697	CCGCCTTTCATCTTGTTACGTAC	59.938	47.826	0.00	0.00	0.00	3.67
440	5776	6.808212	TCTTGTTACGTACTACATGCTTTACC	59.192	38.462	0.00	0.00	0.00	2.85
460	5796	2.564771	CAGCTTCTCCACTTTGTCACA	58.435	47.619	0.00	0.00	0.00	3.58
536	5874	8.922058	ATCTGTGTTGATCAGAAATAAATTGC	57.078	30.769	0.00	0.00	43.65	3.56
537	5875	8.114331	TCTGTGTTGATCAGAAATAAATTGCT	57.886	30.769	0.00	0.00	38.71	3.91
538	5876	8.239314	TCTGTGTTGATCAGAAATAAATTGCTC	58.761	33.333	0.00	0.00	38.71	4.26
540	5878	6.470235	GTGTTGATCAGAAATAAATTGCTCCG	59.530	38.462	0.00	0.00	0.00	4.63
541	5879	5.173774	TGATCAGAAATAAATTGCTCCGC	57.826	39.130	0.00	0.00	0.00	5.54
581	5933	0.597118	TGTCGGTTTAACCACGTCGG	60.597	55.000	14.97	2.92	38.47	4.79
652	6004	5.961897	TCTACTCCCTCCGTTCCTAAATAT	58.038	41.667	0.00	0.00	0.00	1.28
665	6017	9.595823	CCGTTCCTAAATATTTGTCTTTCTAGA	57.404	33.333	11.05	0.00	0.00	2.43
690	6042	6.590292	AGATTTCAACAAGTGACTACATACGG	59.410	38.462	0.00	0.00	35.39	4.02
702	6054	3.871594	ACTACATACGGAGCAAAATGAGC	59.128	43.478	0.00	0.00	0.00	4.26
760	6112	8.190122	TCTATATGTTGTGTCCATTTGAAATGC	58.810	33.333	12.26	0.87	0.00	3.56
773	6125	6.810182	CCATTTGAAATGCCTAGAAAGACAAG	59.190	38.462	12.26	0.00	0.00	3.16
779	6131	9.077885	TGAAATGCCTAGAAAGACAAGTATTTT	57.922	29.630	0.00	0.00	0.00	1.82
789	6141	5.941948	AGACAAGTATTTTGAAACGGAGG	57.058	39.130	0.00	0.00	0.00	4.30
790	6142	4.760204	AGACAAGTATTTTGAAACGGAGGG	59.240	41.667	0.00	0.00	0.00	4.30
791	6143	4.721132	ACAAGTATTTTGAAACGGAGGGA	58.279	39.130	0.00	0.00	0.00	4.20
792	6144	4.760204	ACAAGTATTTTGAAACGGAGGGAG	59.240	41.667	0.00	0.00	0.00	4.30
911	6263	4.649954	GCACGTCACGCAGCACAC	62.650	66.667	10.08	0.00	32.86	3.82
913	6265	2.280119	ACGTCACGCAGCACACAT	60.280	55.556	0.00	0.00	0.00	3.21
923	6275	2.411904	GCAGCACACATATAGGAGAGC	58.588	52.381	0.00	0.00	0.00	4.09
925	6277	3.742327	GCAGCACACATATAGGAGAGCAA	60.742	47.826	6.95	0.00	0.00	3.91
926	6278	4.056740	CAGCACACATATAGGAGAGCAAG	58.943	47.826	6.95	0.00	0.00	4.01
927	6279	3.963374	AGCACACATATAGGAGAGCAAGA	59.037	43.478	6.95	0.00	0.00	3.02
928	6280	4.039004	AGCACACATATAGGAGAGCAAGAG	59.961	45.833	6.95	0.00	0.00	2.85
929	6281	4.202202	GCACACATATAGGAGAGCAAGAGT	60.202	45.833	0.01	0.00	0.00	3.24
930	6282	5.288015	CACACATATAGGAGAGCAAGAGTG	58.712	45.833	0.00	0.00	0.00	3.51
945	6297	5.093169	CAAGAGTGCTCAAACAGAAAGAG	57.907	43.478	1.82	0.00	0.00	2.85
946	6298	4.679373	AGAGTGCTCAAACAGAAAGAGA	57.321	40.909	1.82	0.00	0.00	3.10
947	6299	5.028549	AGAGTGCTCAAACAGAAAGAGAA	57.971	39.130	1.82	0.00	0.00	2.87
948	6300	5.431765	AGAGTGCTCAAACAGAAAGAGAAA	58.568	37.500	1.82	0.00	0.00	2.52
949	6301	5.882557	AGAGTGCTCAAACAGAAAGAGAAAA	59.117	36.000	1.82	0.00	0.00	2.29
950	6302	6.375455	AGAGTGCTCAAACAGAAAGAGAAAAA	59.625	34.615	1.82	0.00	0.00	1.94
951	6303	7.067981	AGAGTGCTCAAACAGAAAGAGAAAAAT	59.932	33.333	1.82	0.00	0.00	1.82
952	6304	8.225603	AGTGCTCAAACAGAAAGAGAAAAATA	57.774	30.769	0.00	0.00	0.00	1.40
953	6305	8.348507	AGTGCTCAAACAGAAAGAGAAAAATAG	58.651	33.333	0.00	0.00	0.00	1.73
954	6306	7.592903	GTGCTCAAACAGAAAGAGAAAAATAGG	59.407	37.037	0.00	0.00	0.00	2.57
955	6307	7.502226	TGCTCAAACAGAAAGAGAAAAATAGGA	59.498	33.333	0.00	0.00	0.00	2.94
956	6308	8.020244	GCTCAAACAGAAAGAGAAAAATAGGAG	58.980	37.037	0.00	0.00	0.00	3.69
957	6309	8.396272	TCAAACAGAAAGAGAAAAATAGGAGG	57.604	34.615	0.00	0.00	0.00	4.30
958	6310	7.448469	TCAAACAGAAAGAGAAAAATAGGAGGG	59.552	37.037	0.00	0.00	0.00	4.30
959	6311	5.821097	ACAGAAAGAGAAAAATAGGAGGGG	58.179	41.667	0.00	0.00	0.00	4.79
960	6312	5.551977	ACAGAAAGAGAAAAATAGGAGGGGA	59.448	40.000	0.00	0.00	0.00	4.81
974	6326	2.788589	GGGAAGAGGGAGAGGGGT	59.211	66.667	0.00	0.00	0.00	4.95
975	6327	1.083141	GGGAAGAGGGAGAGGGGTT	59.917	63.158	0.00	0.00	0.00	4.11
976	6328	0.983905	GGGAAGAGGGAGAGGGGTTC	60.984	65.000	0.00	0.00	0.00	3.62
980	6572	0.397816	AGAGGGAGAGGGGTTCATCG	60.398	60.000	0.00	0.00	0.00	3.84
983	6575	1.437986	GGAGAGGGGTTCATCGTCG	59.562	63.158	0.00	0.00	0.00	5.12
985	6577	0.100861	GAGAGGGGTTCATCGTCGAC	59.899	60.000	5.18	5.18	0.00	4.20
993	6585	3.319755	GGTTCATCGTCGACTGGTAAAA	58.680	45.455	14.70	0.00	0.00	1.52
994	6586	3.367025	GGTTCATCGTCGACTGGTAAAAG	59.633	47.826	14.70	0.00	0.00	2.27
1015	6607	2.298158	GAAGATGAAGGAGGCCGCGA	62.298	60.000	8.23	0.00	0.00	5.87
1174	6766	3.015293	CTGCAGCAAGCCGTACGTG	62.015	63.158	15.21	7.27	44.83	4.49
1219	6811	1.219522	CGCGTCCGTTTCTTGGTTCT	61.220	55.000	0.00	0.00	0.00	3.01
1224	6816	2.033151	GTCCGTTTCTTGGTTCTTCGTG	60.033	50.000	0.00	0.00	0.00	4.35
1230	6822	0.433492	CTTGGTTCTTCGTGTACGCG	59.567	55.000	22.43	22.43	39.60	6.01
1232	6824	0.935831	TGGTTCTTCGTGTACGCGTG	60.936	55.000	26.44	19.88	39.60	5.34
1233	6825	1.127225	GTTCTTCGTGTACGCGTGC	59.873	57.895	26.44	22.71	39.60	5.34
1234	6826	1.299240	TTCTTCGTGTACGCGTGCA	60.299	52.632	26.35	26.35	39.60	4.57
1235	6827	1.542272	TTCTTCGTGTACGCGTGCAC	61.542	55.000	39.44	39.44	41.76	4.57
1258	6850	0.387750	GCTTTTTGAGCCAGGCTTCG	60.388	55.000	17.46	1.94	46.01	3.79
1329	6940	1.381463	GGCCGGTACCTCCCTTTTT	59.619	57.895	10.90	0.00	0.00	1.94
1335	6946	3.102204	CGGTACCTCCCTTTTTCTAGGA	58.898	50.000	10.90	0.00	37.50	2.94
1336	6947	3.516700	CGGTACCTCCCTTTTTCTAGGAA	59.483	47.826	10.90	0.00	37.50	3.36
1371	6982	2.513897	GGTGTGGCCGTATCCTGC	60.514	66.667	0.00	0.00	0.00	4.85
1407	7018	3.572682	TCGTTAGCTTCTTCTTCCTGTGA	59.427	43.478	0.00	0.00	0.00	3.58
1430	7041	0.737715	CTTGAGCAGTACGTGAGGCC	60.738	60.000	0.00	0.00	0.00	5.19
1452	7063	1.133407	GTGAGACTGTAGGAAGGAGCG	59.867	57.143	0.00	0.00	0.00	5.03
1485	7096	2.199535	GGGGATGGCATGAAGGGG	59.800	66.667	3.81	0.00	0.00	4.79
1544	7155	0.243095	GCTTCCTGCCTTTGCTTCTG	59.757	55.000	0.00	0.00	38.71	3.02
1572	7183	3.244146	CCTCCACCATCAGATGAAGCTAG	60.244	52.174	12.41	2.95	0.00	3.42
1591	7202	1.604378	CCTCCACCACAGTCCCATC	59.396	63.158	0.00	0.00	0.00	3.51
1592	7203	0.911525	CCTCCACCACAGTCCCATCT	60.912	60.000	0.00	0.00	0.00	2.90
1593	7204	0.539051	CTCCACCACAGTCCCATCTC	59.461	60.000	0.00	0.00	0.00	2.75
1594	7205	0.909610	TCCACCACAGTCCCATCTCC	60.910	60.000	0.00	0.00	0.00	3.71
1595	7206	1.604378	CACCACAGTCCCATCTCCC	59.396	63.158	0.00	0.00	0.00	4.30
1596	7207	1.990060	ACCACAGTCCCATCTCCCG	60.990	63.158	0.00	0.00	0.00	5.14
1597	7208	1.990060	CCACAGTCCCATCTCCCGT	60.990	63.158	0.00	0.00	0.00	5.28
1612	7223	1.274167	TCCCGTGTGTGTGGAATAGTC	59.726	52.381	0.00	0.00	0.00	2.59
1620	7231	1.661112	GTGTGGAATAGTCGCTTCTGC	59.339	52.381	0.00	0.00	0.00	4.26
1636	7247	2.047179	GCCCACCGTCTGGAACTC	60.047	66.667	0.00	0.00	43.95	3.01
1637	7248	2.879233	GCCCACCGTCTGGAACTCA	61.879	63.158	0.00	0.00	43.95	3.41
1651	7262	1.489560	AACTCAGGAAACCTCCCCGG	61.490	60.000	0.00	0.00	43.64	5.73
1696	7307	3.342377	TTCCGTGAGCCATTGAATGTA	57.658	42.857	4.27	0.00	0.00	2.29
1698	7309	3.006940	TCCGTGAGCCATTGAATGTAAC	58.993	45.455	4.27	0.00	0.00	2.50
1732	7343	1.520564	GTCATATGCGCACCGTCCA	60.521	57.895	14.90	0.00	0.00	4.02
1915	7541	1.727022	AACCGTCGTAAGTGTCGCG	60.727	57.895	0.00	0.00	39.48	5.87
1972	7598	3.116079	ACCCGACGATACACTTTTGTT	57.884	42.857	0.00	0.00	37.15	2.83
1986	7612	7.986085	ACACTTTTGTTAGTAGATCTTGCAT	57.014	32.000	0.00	0.00	28.43	3.96
1991	7617	9.160496	CTTTTGTTAGTAGATCTTGCATCTCTT	57.840	33.333	0.00	0.00	0.00	2.85
1994	7620	4.953940	AGTAGATCTTGCATCTCTTCCC	57.046	45.455	0.00	0.00	0.00	3.97
1995	7621	4.293494	AGTAGATCTTGCATCTCTTCCCA	58.707	43.478	0.00	0.00	0.00	4.37
1996	7622	4.906664	AGTAGATCTTGCATCTCTTCCCAT	59.093	41.667	0.00	0.00	0.00	4.00
1997	7623	4.088056	AGATCTTGCATCTCTTCCCATG	57.912	45.455	0.00	0.00	0.00	3.66
1998	7624	3.458857	AGATCTTGCATCTCTTCCCATGT	59.541	43.478	0.00	0.00	0.00	3.21
1999	7625	4.657504	AGATCTTGCATCTCTTCCCATGTA	59.342	41.667	0.00	0.00	0.00	2.29
2000	7626	4.412796	TCTTGCATCTCTTCCCATGTAG	57.587	45.455	0.00	0.00	0.00	2.74
2001	7627	3.776969	TCTTGCATCTCTTCCCATGTAGT	59.223	43.478	0.00	0.00	0.00	2.73
2002	7628	3.548745	TGCATCTCTTCCCATGTAGTG	57.451	47.619	0.00	0.00	0.00	2.74
2053	7688	2.993899	CGTTGCTTCCCAAGTAGTAGTG	59.006	50.000	0.00	0.00	33.21	2.74
2057	7692	3.512724	TGCTTCCCAAGTAGTAGTGGTAC	59.487	47.826	0.28	0.00	32.60	3.34
2058	7693	3.768215	GCTTCCCAAGTAGTAGTGGTACT	59.232	47.826	0.00	0.00	42.49	2.73
2059	7694	4.952335	GCTTCCCAAGTAGTAGTGGTACTA	59.048	45.833	0.00	0.00	40.23	1.82
2060	7695	5.067544	GCTTCCCAAGTAGTAGTGGTACTAG	59.932	48.000	0.00	0.00	41.53	2.57
2061	7696	5.786121	TCCCAAGTAGTAGTGGTACTAGT	57.214	43.478	0.00	0.00	44.26	2.57
2062	7697	6.891306	TCCCAAGTAGTAGTGGTACTAGTA	57.109	41.667	0.00	0.00	42.38	1.82
2103	7738	4.569564	ACAAGAAAAGTCGTTGGTACTGAC	59.430	41.667	0.00	0.00	0.00	3.51
2104	7739	4.667519	AGAAAAGTCGTTGGTACTGACT	57.332	40.909	0.00	0.00	38.70	3.41
2105	7740	5.779529	AGAAAAGTCGTTGGTACTGACTA	57.220	39.130	9.75	0.00	37.25	2.59
2106	7741	5.770417	AGAAAAGTCGTTGGTACTGACTAG	58.230	41.667	9.75	0.00	37.25	2.57
2107	7742	5.301298	AGAAAAGTCGTTGGTACTGACTAGT	59.699	40.000	0.00	0.00	37.25	2.57
2108	7743	4.500603	AAGTCGTTGGTACTGACTAGTG	57.499	45.455	0.00	0.00	37.25	2.74
2408	8065	2.588034	GACGCGTGCCCCTTATCC	60.588	66.667	20.70	0.00	0.00	2.59
2455	8112	3.759766	GACGGGTCGCTCTAGCAGC	62.760	68.421	2.44	4.62	45.85	5.25
2467	8124	3.992643	CTCTAGCAGCAGCAGAATATGT	58.007	45.455	3.17	0.00	45.49	2.29
2473	8130	3.528532	CAGCAGCAGAATATGTGAGTGA	58.471	45.455	0.00	0.00	0.00	3.41
2534	8191	1.419374	GTACAAGCGACACTGTGAGG	58.581	55.000	15.86	6.64	0.00	3.86
2538	8195	1.399744	AAGCGACACTGTGAGGGTGA	61.400	55.000	15.86	0.00	38.01	4.02
2584	8252	4.181010	CAGATCACCGGGCTGGGG	62.181	72.222	18.49	14.09	45.54	4.96
2691	8359	2.140717	CGTTCCACTGGGTAAACTCAC	58.859	52.381	0.00	0.00	34.93	3.51
2711	8379	4.915667	TCACGAGTTAATCTTTCACGTCAG	59.084	41.667	0.00	0.00	0.00	3.51
2730	8398	2.558286	CCACAGCCACAGGTTGCAG	61.558	63.158	0.00	0.00	37.43	4.41
2739	8407	2.513753	CACAGGTTGCAGGTGGAATTA	58.486	47.619	0.00	0.00	0.00	1.40
2740	8408	2.228822	CACAGGTTGCAGGTGGAATTAC	59.771	50.000	0.00	0.00	0.00	1.89
2806	8475	1.076332	CTTTTAACCAGACGAGGCCG	58.924	55.000	0.00	0.00	42.50	6.13
2906	8576	0.462047	CGTGGTAACCAGCTCCATCC	60.462	60.000	0.00	0.00	32.34	3.51
2977	8652	0.100682	CTCAGCTGGATGCAATGCAC	59.899	55.000	11.23	4.58	40.85	4.57
2980	8655	2.802792	CTGGATGCAATGCACGGG	59.197	61.111	11.23	0.00	40.85	5.28
2995	8674	0.759346	ACGGGTTGCTCTTTCTCTGT	59.241	50.000	0.00	0.00	0.00	3.41
3123	8802	0.989602	TCCTCTCCGTGTCCTCTACA	59.010	55.000	0.00	0.00	35.06	2.74
3137	8816	6.097839	GTGTCCTCTACATTCCAGGTATGTTA	59.902	42.308	16.30	5.60	41.10	2.41
3138	8817	6.670464	TGTCCTCTACATTCCAGGTATGTTAA	59.330	38.462	16.30	5.30	37.42	2.01
3139	8818	7.147724	TGTCCTCTACATTCCAGGTATGTTAAG	60.148	40.741	16.30	13.14	37.42	1.85
3140	8819	6.901300	TCCTCTACATTCCAGGTATGTTAAGT	59.099	38.462	16.30	0.00	37.42	2.24
3142	8821	6.346096	TCTACATTCCAGGTATGTTAAGTGC	58.654	40.000	16.30	0.00	37.42	4.40
3475	9221	1.205655	CTCATTGGCTCAACGGAGAGA	59.794	52.381	10.15	0.00	44.26	3.10
3476	9222	1.205655	TCATTGGCTCAACGGAGAGAG	59.794	52.381	10.15	1.54	44.26	3.20
3502	9248	5.758784	AGAAACTGTACTAACCTTTGACAGC	59.241	40.000	0.00	0.00	40.97	4.40
3543	9290	5.299531	GGTTTCTCTTTCTGTTAAACAGGCT	59.700	40.000	0.00	0.00	45.94	4.58
3544	9291	6.485648	GGTTTCTCTTTCTGTTAAACAGGCTA	59.514	38.462	0.00	0.00	45.94	3.93
3601	9348	3.195661	CTCCTTCCGCTTGGTGTATAAC	58.804	50.000	0.00	0.00	0.00	1.89
3638	9385	8.849168	TGAATTGAGTTTCTTTAGCTTTCATCA	58.151	29.630	0.00	0.00	0.00	3.07
3639	9386	9.339492	GAATTGAGTTTCTTTAGCTTTCATCAG	57.661	33.333	0.00	0.00	0.00	2.90
3671	9418	3.441222	TGTGCATTATCTTGCTGTGGAAG	59.559	43.478	0.00	0.00	43.18	3.46
3686	9435	1.833630	TGGAAGCCACAGACCTATCAG	59.166	52.381	0.00	0.00	0.00	2.90
3718	9467	5.642165	ACACTGATATATACTCCCTCCGTT	58.358	41.667	0.00	0.00	0.00	4.44
3720	9469	5.125739	CACTGATATATACTCCCTCCGTTCC	59.874	48.000	0.00	0.00	0.00	3.62
3721	9470	5.222275	ACTGATATATACTCCCTCCGTTCCA	60.222	44.000	0.00	0.00	0.00	3.53
3722	9471	5.647230	TGATATATACTCCCTCCGTTCCAA	58.353	41.667	0.00	0.00	0.00	3.53
3723	9472	6.079336	TGATATATACTCCCTCCGTTCCAAA	58.921	40.000	0.00	0.00	0.00	3.28
3724	9473	6.729100	TGATATATACTCCCTCCGTTCCAAAT	59.271	38.462	0.00	0.00	0.00	2.32
3726	9475	8.674925	ATATATACTCCCTCCGTTCCAAATTA	57.325	34.615	0.00	0.00	0.00	1.40
3727	9476	3.345508	ACTCCCTCCGTTCCAAATTAC	57.654	47.619	0.00	0.00	0.00	1.89
3729	9478	3.055312	ACTCCCTCCGTTCCAAATTACTC	60.055	47.826	0.00	0.00	0.00	2.59
3730	9479	2.093869	TCCCTCCGTTCCAAATTACTCG	60.094	50.000	0.00	0.00	0.00	4.18
3731	9480	2.354403	CCCTCCGTTCCAAATTACTCGT	60.354	50.000	0.00	0.00	0.00	4.18
3732	9481	2.928116	CCTCCGTTCCAAATTACTCGTC	59.072	50.000	0.00	0.00	0.00	4.20
3735	9484	1.722464	CGTTCCAAATTACTCGTCGCA	59.278	47.619	0.00	0.00	0.00	5.10
3736	9485	2.222508	CGTTCCAAATTACTCGTCGCAG	60.223	50.000	0.00	0.00	0.00	5.18
3737	9486	2.991190	GTTCCAAATTACTCGTCGCAGA	59.009	45.455	0.00	0.00	0.00	4.26
3738	9487	3.306917	TCCAAATTACTCGTCGCAGAA	57.693	42.857	0.00	0.00	39.69	3.02
3740	9489	4.250464	TCCAAATTACTCGTCGCAGAAAT	58.750	39.130	0.00	0.00	39.69	2.17
3741	9490	4.092821	TCCAAATTACTCGTCGCAGAAATG	59.907	41.667	0.00	0.00	39.69	2.32
3743	9533	3.520290	ATTACTCGTCGCAGAAATGGA	57.480	42.857	0.00	0.00	39.69	3.41
3745	9535	1.645034	ACTCGTCGCAGAAATGGATG	58.355	50.000	0.00	0.00	39.69	3.51
3751	9541	4.277423	TCGTCGCAGAAATGGATGTATCTA	59.723	41.667	0.00	0.00	39.69	1.98
3753	9543	5.562890	CGTCGCAGAAATGGATGTATCTAGA	60.563	44.000	0.00	0.00	39.69	2.43
3759	9549	9.547753	GCAGAAATGGATGTATCTAGAACTAAA	57.452	33.333	0.00	0.00	0.00	1.85
3788	9578	9.900710	ACATCTAGATACATTCATTTCTACGAC	57.099	33.333	4.54	0.00	0.00	4.34
3789	9579	9.056306	CATCTAGATACATTCATTTCTACGACG	57.944	37.037	4.54	0.00	0.00	5.12
3790	9580	8.374327	TCTAGATACATTCATTTCTACGACGA	57.626	34.615	0.00	0.00	0.00	4.20
3791	9581	8.496751	TCTAGATACATTCATTTCTACGACGAG	58.503	37.037	0.00	0.00	0.00	4.18
3792	9582	7.028926	AGATACATTCATTTCTACGACGAGT	57.971	36.000	0.00	0.00	0.00	4.18
3793	9583	8.151141	AGATACATTCATTTCTACGACGAGTA	57.849	34.615	0.00	0.00	0.00	2.59
3794	9584	8.618677	AGATACATTCATTTCTACGACGAGTAA	58.381	33.333	0.00	0.00	34.45	2.24
3795	9585	9.395707	GATACATTCATTTCTACGACGAGTAAT	57.604	33.333	0.00	0.00	34.45	1.89
3796	9586	9.745880	ATACATTCATTTCTACGACGAGTAATT	57.254	29.630	0.00	0.00	34.45	1.40
3797	9587	8.116624	ACATTCATTTCTACGACGAGTAATTC	57.883	34.615	0.00	0.00	34.45	2.17
3853	9644	6.220881	AGGATAGCTTAGTTCCTCCTATCA	57.779	41.667	0.00	0.00	34.80	2.15
3901	9797	6.557633	ACCAAGATATTAACCTCGGATTACCT	59.442	38.462	0.00	0.00	0.00	3.08
4009	9905	4.342352	GCAAACTGCATTACTGGTACTC	57.658	45.455	0.00	0.00	44.26	2.59
4025	9921	5.258051	TGGTACTCCATTTTATCCACCAAC	58.742	41.667	0.00	0.00	39.03	3.77
4036	9932	9.357652	CATTTTATCCACCAACATACTTTTCAG	57.642	33.333	0.00	0.00	0.00	3.02
4043	9939	6.086222	CACCAACATACTTTTCAGCATACAC	58.914	40.000	0.00	0.00	0.00	2.90
4075	9971	6.853872	TGCAATGTTGTAAATTCTACACGAAC	59.146	34.615	0.00	0.00	33.72	3.95
4104	10000	6.025749	TCTTTGAAGAACTCGATAAGCTGA	57.974	37.500	0.00	0.00	30.73	4.26
4107	10003	5.242069	TGAAGAACTCGATAAGCTGAGAG	57.758	43.478	5.84	6.20	36.11	3.20
4112	10008	2.954989	ACTCGATAAGCTGAGAGCATGA	59.045	45.455	5.84	0.00	45.56	3.07
4142	10039	8.256611	TCTATCTCTTGCATGTTTTCAACTAC	57.743	34.615	0.00	0.00	0.00	2.73
4158	10055	9.513906	TTTTCAACTACACTTCATGGATATCAA	57.486	29.630	4.83	0.00	0.00	2.57
4159	10056	8.492673	TTCAACTACACTTCATGGATATCAAC	57.507	34.615	4.83	0.00	0.00	3.18
4164	10061	9.466497	ACTACACTTCATGGATATCAACAAATT	57.534	29.630	4.83	0.00	0.00	1.82
4198	10097	9.651913	AACTGTTTTGTCTTTTGTGATACAATT	57.348	25.926	0.00	0.00	38.00	2.32
4250	10149	5.927281	TCCACTATACCAAGAACCAGTAC	57.073	43.478	0.00	0.00	0.00	2.73
4299	10198	6.681729	TTACAGGAAGTTTCTCACAGGTAT	57.318	37.500	0.00	0.00	0.00	2.73
4432	10334	2.026879	GCCTCTCTTAGCGCCGAG	59.973	66.667	2.29	8.29	0.00	4.63
4686	10588	9.615295	TTTTTGGTATTAGTCGTGCTAAATTTC	57.385	29.630	0.00	0.00	42.35	2.17
4800	10702	7.116805	CGATTGCCTCTTTTGCTTTTATTTTCT	59.883	33.333	0.00	0.00	0.00	2.52
4826	10728	9.508642	TGTTCATGTAACCATGTCAATAGTTTA	57.491	29.630	2.91	0.00	46.99	2.01
5145	11048	7.807977	AAACTCACAACAGATTATGTCTTGT	57.192	32.000	0.00	0.00	43.00	3.16
5259	11164	2.363680	AGCATGGTTCCTATCAGAGACG	59.636	50.000	0.00	0.00	0.00	4.18
5651	11556	1.208052	GCTGTTCCATCCTCTGCAGTA	59.792	52.381	14.67	0.81	0.00	2.74
5711	11616	2.826488	AGTAGAAGCAGATCCACAGGT	58.174	47.619	0.00	0.00	0.00	4.00
5713	11618	2.486472	AGAAGCAGATCCACAGGTTG	57.514	50.000	0.00	0.00	0.00	3.77
5719	11625	1.197721	CAGATCCACAGGTTGCGTTTC	59.802	52.381	0.00	0.00	0.00	2.78
5780	11686	6.152831	GGTCAATTAAAGGTAGCTGTTCCATT	59.847	38.462	0.00	0.00	0.00	3.16
5848	11754	2.826488	AGTAGAAGCAGATCCACAGGT	58.174	47.619	0.00	0.00	0.00	4.00
5868	11774	7.434013	CACAGGTTTCAGTTTGTAAATTGTACC	59.566	37.037	13.45	13.45	34.74	3.34
5869	11775	7.122948	ACAGGTTTCAGTTTGTAAATTGTACCA	59.877	33.333	18.61	0.00	35.77	3.25
5870	11776	7.434013	CAGGTTTCAGTTTGTAAATTGTACCAC	59.566	37.037	18.61	7.00	35.77	4.16
5912	11818	5.661458	AGTACAAGGTTGATTCGACATAGG	58.339	41.667	6.39	0.00	0.00	2.57
5956	11862	4.035675	GCTGGAGTAAACCAAGTATGCATC	59.964	45.833	0.19	0.00	39.59	3.91
6178	12085	4.772100	ACATCCAATTCTGTAAACCCAAGG	59.228	41.667	0.00	0.00	0.00	3.61
6332	12245	8.662781	TTCATCAGACCATTATAGCTTAACAC	57.337	34.615	0.00	0.00	0.00	3.32
6438	12411	4.402155	TGAAGAACACAGGTGCAATTTTCT	59.598	37.500	0.00	0.00	0.00	2.52

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	8.268605	AGGGAATGAGAGTAAAAATCTACTTCC	58.731	37.037	8.06	8.06	37.04	3.46
1	2	9.674068	AAGGGAATGAGAGTAAAAATCTACTTC	57.326	33.333	0.00	0.00	32.14	3.01
2	3	9.454859	CAAGGGAATGAGAGTAAAAATCTACTT	57.545	33.333	0.00	0.00	32.14	2.24
3	4	8.606830	ACAAGGGAATGAGAGTAAAAATCTACT	58.393	33.333	0.00	0.00	34.76	2.57
5	6	9.807921	AAACAAGGGAATGAGAGTAAAAATCTA	57.192	29.630	0.00	0.00	0.00	1.98
6	7	8.579863	CAAACAAGGGAATGAGAGTAAAAATCT	58.420	33.333	0.00	0.00	0.00	2.40
7	8	7.814587	CCAAACAAGGGAATGAGAGTAAAAATC	59.185	37.037	0.00	0.00	0.00	2.17
10	11	5.010617	GCCAAACAAGGGAATGAGAGTAAAA	59.989	40.000	0.00	0.00	0.00	1.52
11	12	4.522789	GCCAAACAAGGGAATGAGAGTAAA	59.477	41.667	0.00	0.00	0.00	2.01
12	13	4.079253	GCCAAACAAGGGAATGAGAGTAA	58.921	43.478	0.00	0.00	0.00	2.24
14	15	2.158475	TGCCAAACAAGGGAATGAGAGT	60.158	45.455	0.00	0.00	0.00	3.24
15	16	2.517959	TGCCAAACAAGGGAATGAGAG	58.482	47.619	0.00	0.00	0.00	3.20
16	17	2.673775	TGCCAAACAAGGGAATGAGA	57.326	45.000	0.00	0.00	0.00	3.27
17	18	4.646040	TCATATGCCAAACAAGGGAATGAG	59.354	41.667	0.00	0.00	30.71	2.90
19	20	5.294356	CATCATATGCCAAACAAGGGAATG	58.706	41.667	0.00	0.00	30.71	2.67
20	21	4.345837	CCATCATATGCCAAACAAGGGAAT	59.654	41.667	0.00	0.00	30.71	3.01
21	22	3.705579	CCATCATATGCCAAACAAGGGAA	59.294	43.478	0.00	0.00	30.71	3.97
23	24	2.366266	CCCATCATATGCCAAACAAGGG	59.634	50.000	0.00	0.00	0.00	3.95
24	25	3.298619	TCCCATCATATGCCAAACAAGG	58.701	45.455	0.00	0.00	0.00	3.61
25	26	5.540400	ATTCCCATCATATGCCAAACAAG	57.460	39.130	0.00	0.00	0.00	3.16
28	29	5.291971	GTCAATTCCCATCATATGCCAAAC	58.708	41.667	0.00	0.00	0.00	2.93
29	30	4.037803	CGTCAATTCCCATCATATGCCAAA	59.962	41.667	0.00	0.00	0.00	3.28
30	31	3.569277	CGTCAATTCCCATCATATGCCAA	59.431	43.478	0.00	0.00	0.00	4.52
31	32	3.148412	CGTCAATTCCCATCATATGCCA	58.852	45.455	0.00	0.00	0.00	4.92
32	33	3.058016	CACGTCAATTCCCATCATATGCC	60.058	47.826	0.00	0.00	0.00	4.40
33	34	3.058016	CCACGTCAATTCCCATCATATGC	60.058	47.826	0.00	0.00	0.00	3.14
34	35	3.503363	CCCACGTCAATTCCCATCATATG	59.497	47.826	0.00	0.00	0.00	1.78
35	36	3.394274	TCCCACGTCAATTCCCATCATAT	59.606	43.478	0.00	0.00	0.00	1.78
36	37	2.774809	TCCCACGTCAATTCCCATCATA	59.225	45.455	0.00	0.00	0.00	2.15
37	38	1.563879	TCCCACGTCAATTCCCATCAT	59.436	47.619	0.00	0.00	0.00	2.45
39	40	2.348411	ATCCCACGTCAATTCCCATC	57.652	50.000	0.00	0.00	0.00	3.51
40	41	3.943671	TTATCCCACGTCAATTCCCAT	57.056	42.857	0.00	0.00	0.00	4.00
41	42	3.722908	TTTATCCCACGTCAATTCCCA	57.277	42.857	0.00	0.00	0.00	4.37
42	43	4.014406	AGTTTTATCCCACGTCAATTCCC	58.986	43.478	0.00	0.00	0.00	3.97
46	47	3.689649	GCAGAGTTTTATCCCACGTCAAT	59.310	43.478	0.00	0.00	0.00	2.57
47	48	3.071479	GCAGAGTTTTATCCCACGTCAA	58.929	45.455	0.00	0.00	0.00	3.18
49	50	2.930682	GAGCAGAGTTTTATCCCACGTC	59.069	50.000	0.00	0.00	0.00	4.34
50	51	2.301870	TGAGCAGAGTTTTATCCCACGT	59.698	45.455	0.00	0.00	0.00	4.49
51	52	2.673368	GTGAGCAGAGTTTTATCCCACG	59.327	50.000	0.00	0.00	0.00	4.94
52	53	2.673368	CGTGAGCAGAGTTTTATCCCAC	59.327	50.000	0.00	0.00	0.00	4.61
53	54	2.565391	TCGTGAGCAGAGTTTTATCCCA	59.435	45.455	0.00	0.00	0.00	4.37
54	55	3.247006	TCGTGAGCAGAGTTTTATCCC	57.753	47.619	0.00	0.00	0.00	3.85
55	56	5.803020	AATTCGTGAGCAGAGTTTTATCC	57.197	39.130	0.00	0.00	0.00	2.59
56	57	7.739295	TGTTAATTCGTGAGCAGAGTTTTATC	58.261	34.615	0.00	0.00	0.00	1.75
57	58	7.148407	CCTGTTAATTCGTGAGCAGAGTTTTAT	60.148	37.037	0.00	0.00	0.00	1.40
58	59	6.147164	CCTGTTAATTCGTGAGCAGAGTTTTA	59.853	38.462	0.00	0.00	0.00	1.52
59	60	5.049405	CCTGTTAATTCGTGAGCAGAGTTTT	60.049	40.000	0.00	0.00	0.00	2.43
60	61	4.452455	CCTGTTAATTCGTGAGCAGAGTTT	59.548	41.667	0.00	0.00	0.00	2.66
61	62	3.997021	CCTGTTAATTCGTGAGCAGAGTT	59.003	43.478	0.00	0.00	0.00	3.01
62	63	3.589988	CCTGTTAATTCGTGAGCAGAGT	58.410	45.455	0.00	0.00	0.00	3.24
63	64	2.932614	CCCTGTTAATTCGTGAGCAGAG	59.067	50.000	0.00	0.00	0.00	3.35
64	65	2.301870	ACCCTGTTAATTCGTGAGCAGA	59.698	45.455	0.00	0.00	0.00	4.26
84	85	2.224548	CCGATTTCTTCCCAGGGGATAC	60.225	54.545	8.12	0.00	44.74	2.24
87	88	0.549169	ACCGATTTCTTCCCAGGGGA	60.549	55.000	5.33	2.02	43.52	4.81
88	89	0.394352	CACCGATTTCTTCCCAGGGG	60.394	60.000	5.33	0.92	0.00	4.79
90	91	0.394352	CCCACCGATTTCTTCCCAGG	60.394	60.000	0.00	0.00	0.00	4.45
92	93	1.068948	TTCCCACCGATTTCTTCCCA	58.931	50.000	0.00	0.00	0.00	4.37
93	94	2.427095	CAATTCCCACCGATTTCTTCCC	59.573	50.000	0.00	0.00	0.00	3.97
94	95	2.427095	CCAATTCCCACCGATTTCTTCC	59.573	50.000	0.00	0.00	0.00	3.46
95	96	3.089284	ACCAATTCCCACCGATTTCTTC	58.911	45.455	0.00	0.00	0.00	2.87
96	97	3.169512	ACCAATTCCCACCGATTTCTT	57.830	42.857	0.00	0.00	0.00	2.52
97	98	2.899303	ACCAATTCCCACCGATTTCT	57.101	45.000	0.00	0.00	0.00	2.52
98	99	3.953712	AAACCAATTCCCACCGATTTC	57.046	42.857	0.00	0.00	0.00	2.17
99	100	3.901222	AGAAAACCAATTCCCACCGATTT	59.099	39.130	0.00	0.00	0.00	2.17
100	101	3.506398	AGAAAACCAATTCCCACCGATT	58.494	40.909	0.00	0.00	0.00	3.34
103	104	2.235016	TGAGAAAACCAATTCCCACCG	58.765	47.619	0.00	0.00	0.00	4.94
104	105	3.641436	AGTTGAGAAAACCAATTCCCACC	59.359	43.478	0.00	0.00	0.00	4.61
105	106	4.262036	GGAGTTGAGAAAACCAATTCCCAC	60.262	45.833	0.00	0.00	41.64	4.61
106	107	3.895041	GGAGTTGAGAAAACCAATTCCCA	59.105	43.478	0.00	0.00	41.64	4.37
107	108	4.521130	GGAGTTGAGAAAACCAATTCCC	57.479	45.455	0.00	0.00	41.64	3.97
109	110	4.584743	ACTGGGAGTTGAGAAAACCAATTC	59.415	41.667	0.00	0.00	31.90	2.17
111	112	4.145052	GACTGGGAGTTGAGAAAACCAAT	58.855	43.478	0.00	0.00	0.00	3.16
112	113	3.551846	GACTGGGAGTTGAGAAAACCAA	58.448	45.455	0.00	0.00	0.00	3.67
113	114	2.158667	GGACTGGGAGTTGAGAAAACCA	60.159	50.000	0.00	0.00	0.00	3.67
114	115	2.505405	GGACTGGGAGTTGAGAAAACC	58.495	52.381	0.00	0.00	0.00	3.27
115	116	2.505405	GGGACTGGGAGTTGAGAAAAC	58.495	52.381	0.00	0.00	0.00	2.43
116	117	1.423921	GGGGACTGGGAGTTGAGAAAA	59.576	52.381	0.00	0.00	0.00	2.29
117	118	1.064825	GGGGACTGGGAGTTGAGAAA	58.935	55.000	0.00	0.00	0.00	2.52
121	122	0.840722	GGAAGGGGACTGGGAGTTGA	60.841	60.000	0.00	0.00	42.68	3.18
122	123	1.133809	TGGAAGGGGACTGGGAGTTG	61.134	60.000	0.00	0.00	42.68	3.16
123	124	1.134438	GTGGAAGGGGACTGGGAGTT	61.134	60.000	0.00	0.00	42.68	3.01
124	125	1.539124	GTGGAAGGGGACTGGGAGT	60.539	63.158	0.00	0.00	42.68	3.85
125	126	0.842467	AAGTGGAAGGGGACTGGGAG	60.842	60.000	0.00	0.00	42.68	4.30
127	128	1.368374	TTAAGTGGAAGGGGACTGGG	58.632	55.000	0.00	0.00	42.68	4.45
131	132	2.290768	GGGAGTTTAAGTGGAAGGGGAC	60.291	54.545	0.00	0.00	0.00	4.46
132	133	1.990327	GGGAGTTTAAGTGGAAGGGGA	59.010	52.381	0.00	0.00	0.00	4.81
133	134	1.708551	TGGGAGTTTAAGTGGAAGGGG	59.291	52.381	0.00	0.00	0.00	4.79
134	135	3.739401	ATGGGAGTTTAAGTGGAAGGG	57.261	47.619	0.00	0.00	0.00	3.95
137	138	3.660669	AGGGAATGGGAGTTTAAGTGGAA	59.339	43.478	0.00	0.00	0.00	3.53
138	139	3.265489	AGGGAATGGGAGTTTAAGTGGA	58.735	45.455	0.00	0.00	0.00	4.02
139	140	3.267031	AGAGGGAATGGGAGTTTAAGTGG	59.733	47.826	0.00	0.00	0.00	4.00
140	141	4.576330	AGAGGGAATGGGAGTTTAAGTG	57.424	45.455	0.00	0.00	0.00	3.16
141	142	6.910259	ATTAGAGGGAATGGGAGTTTAAGT	57.090	37.500	0.00	0.00	0.00	2.24
142	143	9.695155	TTTAATTAGAGGGAATGGGAGTTTAAG	57.305	33.333	0.00	0.00	0.00	1.85
143	144	9.470399	GTTTAATTAGAGGGAATGGGAGTTTAA	57.530	33.333	0.00	0.00	0.00	1.52
147	148	6.217693	ACTGTTTAATTAGAGGGAATGGGAGT	59.782	38.462	0.00	0.00	0.00	3.85
148	149	6.543831	CACTGTTTAATTAGAGGGAATGGGAG	59.456	42.308	0.00	0.00	0.00	4.30
150	151	6.423182	TCACTGTTTAATTAGAGGGAATGGG	58.577	40.000	0.00	0.00	0.00	4.00
151	152	7.938140	TTCACTGTTTAATTAGAGGGAATGG	57.062	36.000	3.12	0.00	0.00	3.16
167	168	8.803235	GGGTAAGGAGATTAAAAATTCACTGTT	58.197	33.333	0.00	0.00	0.00	3.16
168	169	7.396339	GGGGTAAGGAGATTAAAAATTCACTGT	59.604	37.037	0.00	0.00	0.00	3.55
169	170	7.615757	AGGGGTAAGGAGATTAAAAATTCACTG	59.384	37.037	0.00	0.00	0.00	3.66
170	171	7.709601	AGGGGTAAGGAGATTAAAAATTCACT	58.290	34.615	0.00	0.00	0.00	3.41
171	172	7.614192	TGAGGGGTAAGGAGATTAAAAATTCAC	59.386	37.037	0.00	0.00	0.00	3.18
172	173	7.704727	TGAGGGGTAAGGAGATTAAAAATTCA	58.295	34.615	0.00	0.00	0.00	2.57
176	177	7.098845	AGTTGAGGGGTAAGGAGATTAAAAA	57.901	36.000	0.00	0.00	0.00	1.94
180	181	4.296056	GGAGTTGAGGGGTAAGGAGATTA	58.704	47.826	0.00	0.00	0.00	1.75
181	182	3.116174	GGAGTTGAGGGGTAAGGAGATT	58.884	50.000	0.00	0.00	0.00	2.40
182	183	2.629909	GGGAGTTGAGGGGTAAGGAGAT	60.630	54.545	0.00	0.00	0.00	2.75
183	184	1.273666	GGGAGTTGAGGGGTAAGGAGA	60.274	57.143	0.00	0.00	0.00	3.71
185	186	0.494551	TGGGAGTTGAGGGGTAAGGA	59.505	55.000	0.00	0.00	0.00	3.36
186	187	1.596496	ATGGGAGTTGAGGGGTAAGG	58.404	55.000	0.00	0.00	0.00	2.69
187	188	2.092375	GGAATGGGAGTTGAGGGGTAAG	60.092	54.545	0.00	0.00	0.00	2.34
189	190	1.591768	GGAATGGGAGTTGAGGGGTA	58.408	55.000	0.00	0.00	0.00	3.69
190	191	1.214992	GGGAATGGGAGTTGAGGGGT	61.215	60.000	0.00	0.00	0.00	4.95
191	192	1.615262	GGGAATGGGAGTTGAGGGG	59.385	63.158	0.00	0.00	0.00	4.79
192	193	1.615262	GGGGAATGGGAGTTGAGGG	59.385	63.158	0.00	0.00	0.00	4.30
193	194	1.224592	CGGGGAATGGGAGTTGAGG	59.775	63.158	0.00	0.00	0.00	3.86
194	195	0.107654	GACGGGGAATGGGAGTTGAG	60.108	60.000	0.00	0.00	0.00	3.02
198	199	0.635009	TAGAGACGGGGAATGGGAGT	59.365	55.000	0.00	0.00	0.00	3.85
199	200	1.789523	TTAGAGACGGGGAATGGGAG	58.210	55.000	0.00	0.00	0.00	4.30
201	202	2.224548	GGAATTAGAGACGGGGAATGGG	60.225	54.545	0.00	0.00	0.00	4.00
202	203	2.224548	GGGAATTAGAGACGGGGAATGG	60.225	54.545	0.00	0.00	0.00	3.16
205	206	1.009183	AGGGGAATTAGAGACGGGGAA	59.991	52.381	0.00	0.00	0.00	3.97
207	208	0.759346	CAGGGGAATTAGAGACGGGG	59.241	60.000	0.00	0.00	0.00	5.73
208	209	1.789523	TCAGGGGAATTAGAGACGGG	58.210	55.000	0.00	0.00	0.00	5.28
209	210	2.158943	GGTTCAGGGGAATTAGAGACGG	60.159	54.545	0.00	0.00	35.05	4.79
210	211	2.500098	TGGTTCAGGGGAATTAGAGACG	59.500	50.000	0.00	0.00	35.05	4.18
211	212	4.569719	TTGGTTCAGGGGAATTAGAGAC	57.430	45.455	0.00	0.00	35.05	3.36
212	213	4.352595	TGTTTGGTTCAGGGGAATTAGAGA	59.647	41.667	0.00	0.00	35.05	3.10
215	216	3.190535	CGTGTTTGGTTCAGGGGAATTAG	59.809	47.826	0.00	0.00	35.05	1.73
216	217	3.150767	CGTGTTTGGTTCAGGGGAATTA	58.849	45.455	0.00	0.00	35.05	1.40
219	220	0.256464	ACGTGTTTGGTTCAGGGGAA	59.744	50.000	0.00	0.00	0.00	3.97
220	221	0.256464	AACGTGTTTGGTTCAGGGGA	59.744	50.000	0.00	0.00	0.00	4.81
221	222	0.383949	CAACGTGTTTGGTTCAGGGG	59.616	55.000	0.00	0.00	0.00	4.79
223	224	1.202245	CCACAACGTGTTTGGTTCAGG	60.202	52.381	0.00	0.00	39.84	3.86
224	225	1.202245	CCCACAACGTGTTTGGTTCAG	60.202	52.381	8.97	0.00	39.84	3.02
225	226	0.811915	CCCACAACGTGTTTGGTTCA	59.188	50.000	8.97	0.00	39.84	3.18
226	227	0.812549	ACCCACAACGTGTTTGGTTC	59.187	50.000	8.97	0.00	39.84	3.62
228	229	1.939769	GCACCCACAACGTGTTTGGT	61.940	55.000	8.97	2.58	39.84	3.67
229	230	1.226831	GCACCCACAACGTGTTTGG	60.227	57.895	0.00	0.00	39.84	3.28
230	231	1.585002	CGCACCCACAACGTGTTTG	60.585	57.895	0.00	0.00	41.49	2.93
232	233	3.883180	GCGCACCCACAACGTGTT	61.883	61.111	0.30	0.00	33.61	3.32
238	239	3.069980	AAAAAGCGCGCACCCACAA	62.070	52.632	35.10	0.00	0.00	3.33
240	241	3.029735	CAAAAAGCGCGCACCCAC	61.030	61.111	35.10	1.61	0.00	4.61
241	242	4.940593	GCAAAAAGCGCGCACCCA	62.941	61.111	35.10	0.00	0.00	4.51
256	5584	7.041721	CGCTACAAATATATATTCCTCCAGCA	58.958	38.462	8.42	0.00	0.00	4.41
269	5597	8.885722	CCAAAGTCCTAAAACGCTACAAATATA	58.114	33.333	0.00	0.00	0.00	0.86
286	5614	4.447138	TTTACATGACCACCAAAGTCCT	57.553	40.909	0.00	0.00	33.09	3.85
296	5624	5.818336	TGACTCTTTTCGTTTTACATGACCA	59.182	36.000	0.00	0.00	0.00	4.02
358	5688	1.600916	GTCTGGTGCCTCCGCTTTT	60.601	57.895	0.00	0.00	39.52	2.27
416	5746	6.587226	TGGTAAAGCATGTAGTACGTAACAAG	59.413	38.462	4.31	1.80	0.00	3.16
440	5776	2.564771	TGTGACAAAGTGGAGAAGCTG	58.435	47.619	0.00	0.00	0.00	4.24
540	5878	1.606480	GGCAGGAAAAGAAGCAAAGGC	60.606	52.381	0.00	0.00	41.61	4.35
541	5879	1.966354	AGGCAGGAAAAGAAGCAAAGG	59.034	47.619	0.00	0.00	0.00	3.11
581	5933	2.289506	ACTTCTCGGGCCTTACAAAGAC	60.290	50.000	0.84	0.00	0.00	3.01
652	6004	9.396022	ACTTGTTGAAATCTCTAGAAAGACAAA	57.604	29.630	0.00	0.00	0.00	2.83
665	6017	6.590292	CCGTATGTAGTCACTTGTTGAAATCT	59.410	38.462	0.00	0.00	35.39	2.40
666	6018	6.588756	TCCGTATGTAGTCACTTGTTGAAATC	59.411	38.462	0.00	0.00	35.39	2.17
677	6029	4.868171	TCATTTTGCTCCGTATGTAGTCAC	59.132	41.667	0.00	0.00	0.00	3.67
690	6042	4.331168	AGTGTAGATTCGCTCATTTTGCTC	59.669	41.667	0.00	0.00	0.00	4.26
736	6088	7.123997	AGGCATTTCAAATGGACACAACATATA	59.876	33.333	12.14	0.00	0.00	0.86
743	6095	4.661222	TCTAGGCATTTCAAATGGACACA	58.339	39.130	12.14	0.00	0.00	3.72
746	6098	6.071952	TGTCTTTCTAGGCATTTCAAATGGAC	60.072	38.462	12.14	8.23	29.10	4.02
747	6099	6.009589	TGTCTTTCTAGGCATTTCAAATGGA	58.990	36.000	12.14	0.00	29.10	3.41
748	6100	6.271488	TGTCTTTCTAGGCATTTCAAATGG	57.729	37.500	12.14	0.00	29.10	3.16
760	6112	8.015658	CCGTTTCAAAATACTTGTCTTTCTAGG	58.984	37.037	0.00	0.00	0.00	3.02
773	6125	4.331992	GCTACTCCCTCCGTTTCAAAATAC	59.668	45.833	0.00	0.00	0.00	1.89
779	6131	1.275291	CTTGCTACTCCCTCCGTTTCA	59.725	52.381	0.00	0.00	0.00	2.69
789	6141	7.600960	AGTACTTACTGTTAACTTGCTACTCC	58.399	38.462	7.22	0.00	34.72	3.85
790	6142	9.473640	AAAGTACTTACTGTTAACTTGCTACTC	57.526	33.333	8.92	0.00	36.50	2.59
791	6143	9.257651	CAAAGTACTTACTGTTAACTTGCTACT	57.742	33.333	8.92	2.13	36.50	2.57
792	6144	9.038803	ACAAAGTACTTACTGTTAACTTGCTAC	57.961	33.333	8.92	0.00	36.50	3.58
909	6261	4.305769	GCACTCTTGCTCTCCTATATGTG	58.694	47.826	0.00	0.00	46.17	3.21
923	6275	4.813161	TCTCTTTCTGTTTGAGCACTCTTG	59.187	41.667	0.00	0.00	0.00	3.02
925	6277	4.679373	TCTCTTTCTGTTTGAGCACTCT	57.321	40.909	0.00	0.00	0.00	3.24
926	6278	5.741388	TTTCTCTTTCTGTTTGAGCACTC	57.259	39.130	0.00	0.00	0.00	3.51
927	6279	6.515272	TTTTTCTCTTTCTGTTTGAGCACT	57.485	33.333	0.00	0.00	0.00	4.40
928	6280	7.592903	CCTATTTTTCTCTTTCTGTTTGAGCAC	59.407	37.037	0.00	0.00	0.00	4.40
929	6281	7.502226	TCCTATTTTTCTCTTTCTGTTTGAGCA	59.498	33.333	0.00	0.00	0.00	4.26
930	6282	7.875971	TCCTATTTTTCTCTTTCTGTTTGAGC	58.124	34.615	0.00	0.00	0.00	4.26
931	6283	8.510505	CCTCCTATTTTTCTCTTTCTGTTTGAG	58.489	37.037	0.00	0.00	0.00	3.02
932	6284	7.448469	CCCTCCTATTTTTCTCTTTCTGTTTGA	59.552	37.037	0.00	0.00	0.00	2.69
933	6285	7.309438	CCCCTCCTATTTTTCTCTTTCTGTTTG	60.309	40.741	0.00	0.00	0.00	2.93
934	6286	6.721668	CCCCTCCTATTTTTCTCTTTCTGTTT	59.278	38.462	0.00	0.00	0.00	2.83
935	6287	6.045577	TCCCCTCCTATTTTTCTCTTTCTGTT	59.954	38.462	0.00	0.00	0.00	3.16
936	6288	5.551977	TCCCCTCCTATTTTTCTCTTTCTGT	59.448	40.000	0.00	0.00	0.00	3.41
937	6289	6.067217	TCCCCTCCTATTTTTCTCTTTCTG	57.933	41.667	0.00	0.00	0.00	3.02
938	6290	6.505700	TCTTCCCCTCCTATTTTTCTCTTTCT	59.494	38.462	0.00	0.00	0.00	2.52
939	6291	6.722328	TCTTCCCCTCCTATTTTTCTCTTTC	58.278	40.000	0.00	0.00	0.00	2.62
940	6292	6.297301	CCTCTTCCCCTCCTATTTTTCTCTTT	60.297	42.308	0.00	0.00	0.00	2.52
941	6293	5.192722	CCTCTTCCCCTCCTATTTTTCTCTT	59.807	44.000	0.00	0.00	0.00	2.85
942	6294	4.724293	CCTCTTCCCCTCCTATTTTTCTCT	59.276	45.833	0.00	0.00	0.00	3.10
943	6295	4.141367	CCCTCTTCCCCTCCTATTTTTCTC	60.141	50.000	0.00	0.00	0.00	2.87
944	6296	3.788708	CCCTCTTCCCCTCCTATTTTTCT	59.211	47.826	0.00	0.00	0.00	2.52
945	6297	3.786450	TCCCTCTTCCCCTCCTATTTTTC	59.214	47.826	0.00	0.00	0.00	2.29
946	6298	3.788708	CTCCCTCTTCCCCTCCTATTTTT	59.211	47.826	0.00	0.00	0.00	1.94
947	6299	3.015275	TCTCCCTCTTCCCCTCCTATTTT	59.985	47.826	0.00	0.00	0.00	1.82
948	6300	2.597304	TCTCCCTCTTCCCCTCCTATTT	59.403	50.000	0.00	0.00	0.00	1.40
949	6301	2.181196	CTCTCCCTCTTCCCCTCCTATT	59.819	54.545	0.00	0.00	0.00	1.73
950	6302	1.792651	CTCTCCCTCTTCCCCTCCTAT	59.207	57.143	0.00	0.00	0.00	2.57
951	6303	1.236708	CTCTCCCTCTTCCCCTCCTA	58.763	60.000	0.00	0.00	0.00	2.94
952	6304	1.598856	CCTCTCCCTCTTCCCCTCCT	61.599	65.000	0.00	0.00	0.00	3.69
953	6305	1.074850	CCTCTCCCTCTTCCCCTCC	60.075	68.421	0.00	0.00	0.00	4.30
954	6306	1.074850	CCCTCTCCCTCTTCCCCTC	60.075	68.421	0.00	0.00	0.00	4.30
955	6307	2.652113	CCCCTCTCCCTCTTCCCCT	61.652	68.421	0.00	0.00	0.00	4.79
956	6308	2.040359	CCCCTCTCCCTCTTCCCC	60.040	72.222	0.00	0.00	0.00	4.81
957	6309	0.983905	GAACCCCTCTCCCTCTTCCC	60.984	65.000	0.00	0.00	0.00	3.97
958	6310	0.252742	TGAACCCCTCTCCCTCTTCC	60.253	60.000	0.00	0.00	0.00	3.46
959	6311	1.765904	GATGAACCCCTCTCCCTCTTC	59.234	57.143	0.00	0.00	0.00	2.87
960	6312	1.886422	GATGAACCCCTCTCCCTCTT	58.114	55.000	0.00	0.00	0.00	2.85
974	6326	3.985279	CACTTTTACCAGTCGACGATGAA	59.015	43.478	10.46	0.87	0.00	2.57
975	6327	3.253921	TCACTTTTACCAGTCGACGATGA	59.746	43.478	10.46	2.28	0.00	2.92
976	6328	3.571571	TCACTTTTACCAGTCGACGATG	58.428	45.455	10.46	3.68	0.00	3.84
980	6572	5.227908	TCATCTTCACTTTTACCAGTCGAC	58.772	41.667	7.70	7.70	0.00	4.20
983	6575	6.231211	TCCTTCATCTTCACTTTTACCAGTC	58.769	40.000	0.00	0.00	0.00	3.51
985	6577	5.645497	CCTCCTTCATCTTCACTTTTACCAG	59.355	44.000	0.00	0.00	0.00	4.00
993	6585	0.539051	CGGCCTCCTTCATCTTCACT	59.461	55.000	0.00	0.00	0.00	3.41
994	6586	1.092345	GCGGCCTCCTTCATCTTCAC	61.092	60.000	0.00	0.00	0.00	3.18
1015	6607	3.402681	CAGGTGCCCCAGATCCGT	61.403	66.667	0.00	0.00	0.00	4.69
1176	6768	4.818863	TGCACGCATGGGATGGGG	62.819	66.667	17.76	1.75	46.33	4.96
1203	6795	2.033151	CACGAAGAACCAAGAAACGGAC	60.033	50.000	0.00	0.00	0.00	4.79
1230	6822	2.498892	CTCAAAAAGCTGCGTGCAC	58.501	52.632	6.82	6.82	45.94	4.57
1258	6850	2.501610	GATCACCTGGACTCGGCC	59.498	66.667	0.00	0.00	0.00	6.13
1312	6923	0.327259	AGAAAAAGGGAGGTACCGGC	59.673	55.000	6.18	2.50	40.11	6.13
1314	6925	3.102204	TCCTAGAAAAAGGGAGGTACCG	58.898	50.000	6.18	0.00	40.11	4.02
1316	6927	9.696572	ATATTTTTCCTAGAAAAAGGGAGGTAC	57.303	33.333	17.34	0.00	37.24	3.34
1329	6940	7.661437	CCACATTGATCCGATATTTTTCCTAGA	59.339	37.037	0.00	0.00	0.00	2.43
1335	6946	6.405731	CCACACCACATTGATCCGATATTTTT	60.406	38.462	0.00	0.00	0.00	1.94
1336	6947	5.067674	CCACACCACATTGATCCGATATTTT	59.932	40.000	0.00	0.00	0.00	1.82
1371	6982	6.477033	AGAAGCTAACGAGTATAGCAAACATG	59.523	38.462	8.13	0.00	46.49	3.21
1384	6995	3.923461	CACAGGAAGAAGAAGCTAACGAG	59.077	47.826	0.00	0.00	0.00	4.18
1390	7001	2.676463	GCGATCACAGGAAGAAGAAGCT	60.676	50.000	0.00	0.00	0.00	3.74
1407	7018	0.526211	TCACGTACTGCTCAAGCGAT	59.474	50.000	0.00	0.00	45.83	4.58
1430	7041	1.746220	CTCCTTCCTACAGTCTCACCG	59.254	57.143	0.00	0.00	0.00	4.94
1485	7096	0.616111	TTCCACTCTCCTCTCCCTGC	60.616	60.000	0.00	0.00	0.00	4.85
1544	7155	1.751927	CTGATGGTGGAGGCTTGCC	60.752	63.158	2.97	2.97	0.00	4.52
1547	7158	1.588239	TCATCTGATGGTGGAGGCTT	58.412	50.000	17.06	0.00	0.00	4.35
1572	7183	2.543067	GATGGGACTGTGGTGGAGGC	62.543	65.000	0.00	0.00	0.00	4.70
1591	7202	1.275291	ACTATTCCACACACACGGGAG	59.725	52.381	0.00	0.00	31.19	4.30
1592	7203	1.274167	GACTATTCCACACACACGGGA	59.726	52.381	0.00	0.00	0.00	5.14
1593	7204	1.722011	GACTATTCCACACACACGGG	58.278	55.000	0.00	0.00	0.00	5.28
1594	7205	1.346365	CGACTATTCCACACACACGG	58.654	55.000	0.00	0.00	0.00	4.94
1595	7206	0.713883	GCGACTATTCCACACACACG	59.286	55.000	0.00	0.00	0.00	4.49
1596	7207	2.080286	AGCGACTATTCCACACACAC	57.920	50.000	0.00	0.00	0.00	3.82
1597	7208	2.299013	AGAAGCGACTATTCCACACACA	59.701	45.455	0.00	0.00	0.00	3.72
1612	7223	4.379243	AGACGGTGGGCAGAAGCG	62.379	66.667	4.48	4.48	43.41	4.68
1651	7262	2.273179	GGCCGGTTTTCCCAGGAAC	61.273	63.158	1.90	0.00	36.42	3.62
1657	7268	2.139323	AATTCTAGGCCGGTTTTCCC	57.861	50.000	1.90	0.00	36.42	3.97
1696	7307	3.006940	TGACGAGAGCAAACTTGTTGTT	58.993	40.909	0.00	0.00	41.29	2.83
1698	7309	3.885484	ATGACGAGAGCAAACTTGTTG	57.115	42.857	0.00	0.00	35.00	3.33
1732	7343	3.066190	TTCGCTGGGTCGACGGAT	61.066	61.111	9.92	0.00	38.30	4.18
1972	7598	5.458595	TGGGAAGAGATGCAAGATCTACTA	58.541	41.667	0.00	0.00	0.00	1.82
1994	7620	7.718314	TGACCATACTACTACTACCACTACATG	59.282	40.741	0.00	0.00	0.00	3.21
1995	7621	7.809238	TGACCATACTACTACTACCACTACAT	58.191	38.462	0.00	0.00	0.00	2.29
1996	7622	7.199167	TGACCATACTACTACTACCACTACA	57.801	40.000	0.00	0.00	0.00	2.74
1997	7623	8.511604	TTTGACCATACTACTACTACCACTAC	57.488	38.462	0.00	0.00	0.00	2.73
1998	7624	9.182214	CTTTTGACCATACTACTACTACCACTA	57.818	37.037	0.00	0.00	0.00	2.74
1999	7625	7.363617	GCTTTTGACCATACTACTACTACCACT	60.364	40.741	0.00	0.00	0.00	4.00
2000	7626	6.755607	GCTTTTGACCATACTACTACTACCAC	59.244	42.308	0.00	0.00	0.00	4.16
2001	7627	6.666546	AGCTTTTGACCATACTACTACTACCA	59.333	38.462	0.00	0.00	0.00	3.25
2002	7628	7.110043	AGCTTTTGACCATACTACTACTACC	57.890	40.000	0.00	0.00	0.00	3.18
2003	7629	8.351461	CCTAGCTTTTGACCATACTACTACTAC	58.649	40.741	0.00	0.00	0.00	2.73
2004	7630	8.277197	TCCTAGCTTTTGACCATACTACTACTA	58.723	37.037	0.00	0.00	0.00	1.82
2005	7631	7.124052	TCCTAGCTTTTGACCATACTACTACT	58.876	38.462	0.00	0.00	0.00	2.57
2006	7632	7.344095	TCCTAGCTTTTGACCATACTACTAC	57.656	40.000	0.00	0.00	0.00	2.73
2007	7633	6.040616	GCTCCTAGCTTTTGACCATACTACTA	59.959	42.308	0.00	0.00	38.45	1.82
2008	7634	5.163395	GCTCCTAGCTTTTGACCATACTACT	60.163	44.000	0.00	0.00	38.45	2.57
2009	7635	5.051153	GCTCCTAGCTTTTGACCATACTAC	58.949	45.833	0.00	0.00	38.45	2.73
2010	7636	4.202121	CGCTCCTAGCTTTTGACCATACTA	60.202	45.833	0.00	0.00	39.60	1.82
2011	7637	3.430929	CGCTCCTAGCTTTTGACCATACT	60.431	47.826	0.00	0.00	39.60	2.12
2012	7638	2.866762	CGCTCCTAGCTTTTGACCATAC	59.133	50.000	0.00	0.00	39.60	2.39
2013	7639	2.500098	ACGCTCCTAGCTTTTGACCATA	59.500	45.455	0.00	0.00	39.60	2.74
2014	7640	1.279271	ACGCTCCTAGCTTTTGACCAT	59.721	47.619	0.00	0.00	39.60	3.55
2015	7641	0.685097	ACGCTCCTAGCTTTTGACCA	59.315	50.000	0.00	0.00	39.60	4.02
2016	7642	1.464997	CAACGCTCCTAGCTTTTGACC	59.535	52.381	0.00	0.00	39.60	4.02
2033	7659	3.244457	ACCACTACTACTTGGGAAGCAAC	60.244	47.826	0.00	0.00	37.18	4.17
2053	7688	6.602406	TCTCAACTCTCAACCATACTAGTACC	59.398	42.308	4.31	0.00	0.00	3.34
2057	7692	6.071896	TGTGTCTCAACTCTCAACCATACTAG	60.072	42.308	0.00	0.00	0.00	2.57
2058	7693	5.773176	TGTGTCTCAACTCTCAACCATACTA	59.227	40.000	0.00	0.00	0.00	1.82
2059	7694	4.588951	TGTGTCTCAACTCTCAACCATACT	59.411	41.667	0.00	0.00	0.00	2.12
2060	7695	4.883083	TGTGTCTCAACTCTCAACCATAC	58.117	43.478	0.00	0.00	0.00	2.39
2061	7696	5.304357	TCTTGTGTCTCAACTCTCAACCATA	59.696	40.000	0.00	0.00	32.18	2.74
2062	7697	4.101585	TCTTGTGTCTCAACTCTCAACCAT	59.898	41.667	0.00	0.00	32.18	3.55
2103	7738	6.116806	AGATGACACTGGTAGTAGTCACTAG	58.883	44.000	12.81	0.00	38.27	2.57
2104	7739	6.063496	AGATGACACTGGTAGTAGTCACTA	57.937	41.667	12.81	0.00	38.27	2.74
2105	7740	4.924625	AGATGACACTGGTAGTAGTCACT	58.075	43.478	12.81	10.49	38.27	3.41
2106	7741	4.700692	TGAGATGACACTGGTAGTAGTCAC	59.299	45.833	12.81	9.18	38.27	3.67
2107	7742	4.918588	TGAGATGACACTGGTAGTAGTCA	58.081	43.478	12.88	12.88	39.07	3.41
2108	7743	7.569639	TTATGAGATGACACTGGTAGTAGTC	57.430	40.000	0.00	0.00	31.49	2.59
2154	7804	0.622665	AGAATGAGGTCTGCTTGGGG	59.377	55.000	0.00	0.00	0.00	4.96
2190	7843	3.139077	AGCCTTCACGAAGACGAAAAAT	58.861	40.909	8.38	0.00	40.79	1.82
2197	7850	0.238553	GGCAAAGCCTTCACGAAGAC	59.761	55.000	8.38	0.00	46.69	3.01
2416	8073	2.157834	TCGGTGCAAGTTAACGTCAT	57.842	45.000	0.00	0.00	0.00	3.06
2455	8112	2.538861	CGCTCACTCACATATTCTGCTG	59.461	50.000	0.00	0.00	0.00	4.41
2457	8114	1.260033	GCGCTCACTCACATATTCTGC	59.740	52.381	0.00	0.00	0.00	4.26
2458	8115	1.863454	GGCGCTCACTCACATATTCTG	59.137	52.381	7.64	0.00	0.00	3.02
2464	8121	2.433145	CGTGGCGCTCACTCACAT	60.433	61.111	21.36	0.00	43.94	3.21
2465	8122	4.662961	CCGTGGCGCTCACTCACA	62.663	66.667	21.36	2.18	43.94	3.58
2513	8170	0.747852	TCACAGTGTCGCTTGTACCA	59.252	50.000	0.00	0.00	0.00	3.25
2514	8171	1.419374	CTCACAGTGTCGCTTGTACC	58.581	55.000	0.00	0.00	0.00	3.34
2534	8191	0.605319	TGAATTGTCACGGGCTCACC	60.605	55.000	0.00	0.00	0.00	4.02
2538	8195	2.290260	TGAGAATGAATTGTCACGGGCT	60.290	45.455	0.00	0.00	35.47	5.19
2691	8359	3.060895	GGCTGACGTGAAAGATTAACTCG	59.939	47.826	0.00	0.00	0.00	4.18
2711	8379	3.982241	GCAACCTGTGGCTGTGGC	61.982	66.667	0.00	0.00	37.82	5.01
2730	8398	5.615925	AGGTGATCAGTAGTAATTCCACC	57.384	43.478	0.00	0.00	42.13	4.61
2739	8407	5.070685	GGAAACCAAAAGGTGATCAGTAGT	58.929	41.667	0.00	0.00	0.00	2.73
2740	8408	5.316987	AGGAAACCAAAAGGTGATCAGTAG	58.683	41.667	0.00	0.00	0.00	2.57
2806	8475	3.543070	CGACGTAGAAGGCGTAGAAGTAC	60.543	52.174	0.00	0.00	43.04	2.73
2906	8576	0.321671	TGAAAGTTGGCGAGAGAGGG	59.678	55.000	0.00	0.00	0.00	4.30
2977	8652	1.151668	CACAGAGAAAGAGCAACCCG	58.848	55.000	0.00	0.00	0.00	5.28
2980	8655	1.265365	GCCACACAGAGAAAGAGCAAC	59.735	52.381	0.00	0.00	0.00	4.17
3123	8802	2.943033	GCGCACTTAACATACCTGGAAT	59.057	45.455	0.30	0.00	0.00	3.01
3165	8844	5.182001	ACAGATGAAGAAACAACCTATGTGC	59.818	40.000	0.00	0.00	42.99	4.57
3234	8980	1.049289	GGACGAAGGCCCTCAGGTAT	61.049	60.000	0.00	0.00	34.57	2.73
3475	9221	8.015185	TGTCAAAGGTTAGTACAGTTTCTACT	57.985	34.615	0.00	0.00	34.00	2.57
3476	9222	7.095732	GCTGTCAAAGGTTAGTACAGTTTCTAC	60.096	40.741	0.00	0.00	39.74	2.59
3502	9248	2.457366	ACCCTGTTCGCTTACTTGAG	57.543	50.000	0.00	0.00	0.00	3.02
3543	9290	6.897966	AGAACTGATGAACTGGGAGTCTTATA	59.102	38.462	0.00	0.00	0.00	0.98
3544	9291	5.723887	AGAACTGATGAACTGGGAGTCTTAT	59.276	40.000	0.00	0.00	0.00	1.73
3601	9348	6.789262	AGAAACTCAATTCATTGCTAATCCG	58.211	36.000	0.00	0.00	37.68	4.18
3638	9385	6.294010	GCAAGATAATGCACATCATCATGTCT	60.294	38.462	11.60	0.00	41.69	3.41
3639	9386	5.856986	GCAAGATAATGCACATCATCATGTC	59.143	40.000	11.60	0.46	41.69	3.06
3674	9421	7.680730	AGTGTATTTTTCACTGATAGGTCTGT	58.319	34.615	0.00	0.00	43.32	3.41
3711	9460	2.928116	GACGAGTAATTTGGAACGGAGG	59.072	50.000	0.00	0.00	0.00	4.30
3712	9461	2.597305	CGACGAGTAATTTGGAACGGAG	59.403	50.000	0.00	0.00	0.00	4.63
3713	9462	2.598589	CGACGAGTAATTTGGAACGGA	58.401	47.619	0.00	0.00	0.00	4.69
3715	9464	1.722464	TGCGACGAGTAATTTGGAACG	59.278	47.619	0.00	0.00	0.00	3.95
3718	9467	3.306917	TTCTGCGACGAGTAATTTGGA	57.693	42.857	0.00	0.00	0.00	3.53
3720	9469	4.092821	TCCATTTCTGCGACGAGTAATTTG	59.907	41.667	0.00	0.00	0.00	2.32
3721	9470	4.250464	TCCATTTCTGCGACGAGTAATTT	58.750	39.130	0.00	0.00	0.00	1.82
3722	9471	3.857052	TCCATTTCTGCGACGAGTAATT	58.143	40.909	0.00	0.00	0.00	1.40
3723	9472	3.520290	TCCATTTCTGCGACGAGTAAT	57.480	42.857	0.00	0.00	0.00	1.89
3724	9473	3.186909	CATCCATTTCTGCGACGAGTAA	58.813	45.455	0.00	0.00	0.00	2.24
3726	9475	1.066858	ACATCCATTTCTGCGACGAGT	60.067	47.619	0.00	0.00	0.00	4.18
3727	9476	1.645034	ACATCCATTTCTGCGACGAG	58.355	50.000	0.00	0.00	0.00	4.18
3729	9478	3.384668	AGATACATCCATTTCTGCGACG	58.615	45.455	0.00	0.00	0.00	5.12
3730	9479	5.773575	TCTAGATACATCCATTTCTGCGAC	58.226	41.667	0.00	0.00	0.00	5.19
3731	9480	6.040955	AGTTCTAGATACATCCATTTCTGCGA	59.959	38.462	0.00	0.00	0.00	5.10
3732	9481	6.219473	AGTTCTAGATACATCCATTTCTGCG	58.781	40.000	0.00	0.00	0.00	5.18
3763	9553	9.056306	CGTCGTAGAAATGAATGTATCTAGATG	57.944	37.037	15.79	0.00	39.69	2.90
3765	9555	8.374327	TCGTCGTAGAAATGAATGTATCTAGA	57.626	34.615	0.00	0.00	39.69	2.43
3766	9556	8.283992	ACTCGTCGTAGAAATGAATGTATCTAG	58.716	37.037	0.00	0.00	39.69	2.43
3767	9557	8.151141	ACTCGTCGTAGAAATGAATGTATCTA	57.849	34.615	0.00	0.00	39.69	1.98
3769	9559	8.778141	TTACTCGTCGTAGAAATGAATGTATC	57.222	34.615	0.00	0.00	39.69	2.24
3770	9560	9.745880	AATTACTCGTCGTAGAAATGAATGTAT	57.254	29.630	0.00	0.00	39.69	2.29
3771	9561	9.229784	GAATTACTCGTCGTAGAAATGAATGTA	57.770	33.333	0.00	0.00	39.69	2.29
3772	9562	7.044249	CGAATTACTCGTCGTAGAAATGAATGT	60.044	37.037	0.00	0.00	42.89	2.71
3773	9563	7.267318	CGAATTACTCGTCGTAGAAATGAATG	58.733	38.462	0.00	0.00	42.89	2.67
3774	9564	6.417044	CCGAATTACTCGTCGTAGAAATGAAT	59.583	38.462	0.00	0.00	46.65	2.57
3775	9565	5.740569	CCGAATTACTCGTCGTAGAAATGAA	59.259	40.000	0.00	0.00	46.65	2.57
3776	9566	5.065090	TCCGAATTACTCGTCGTAGAAATGA	59.935	40.000	0.00	0.00	46.65	2.57
3777	9567	5.268544	TCCGAATTACTCGTCGTAGAAATG	58.731	41.667	0.00	0.00	46.65	2.32
3778	9568	5.490139	TCCGAATTACTCGTCGTAGAAAT	57.510	39.130	0.00	0.00	46.65	2.17
3779	9569	4.944962	TCCGAATTACTCGTCGTAGAAA	57.055	40.909	0.00	0.00	46.65	2.52
3780	9570	4.651994	GTTCCGAATTACTCGTCGTAGAA	58.348	43.478	0.00	0.00	46.65	2.10
3781	9571	3.242091	CGTTCCGAATTACTCGTCGTAGA	60.242	47.826	0.00	0.00	46.65	2.59
3782	9572	3.024991	CGTTCCGAATTACTCGTCGTAG	58.975	50.000	0.00	0.00	46.65	3.51
3783	9573	2.223021	CCGTTCCGAATTACTCGTCGTA	60.223	50.000	0.00	0.00	46.65	3.43
3784	9574	1.466360	CCGTTCCGAATTACTCGTCGT	60.466	52.381	0.00	0.00	46.65	4.34
3785	9575	1.186030	CCGTTCCGAATTACTCGTCG	58.814	55.000	0.00	0.00	46.65	5.12
3786	9576	2.448219	CTCCGTTCCGAATTACTCGTC	58.552	52.381	0.00	0.00	46.65	4.20
3787	9577	1.133790	CCTCCGTTCCGAATTACTCGT	59.866	52.381	0.00	0.00	46.65	4.18
3789	9579	1.753073	TCCCTCCGTTCCGAATTACTC	59.247	52.381	0.00	0.00	0.00	2.59
3790	9580	1.755380	CTCCCTCCGTTCCGAATTACT	59.245	52.381	0.00	0.00	0.00	2.24
3791	9581	1.479730	ACTCCCTCCGTTCCGAATTAC	59.520	52.381	0.00	0.00	0.00	1.89
3792	9582	1.856629	ACTCCCTCCGTTCCGAATTA	58.143	50.000	0.00	0.00	0.00	1.40
3793	9583	1.479730	GTACTCCCTCCGTTCCGAATT	59.520	52.381	0.00	0.00	0.00	2.17
3794	9584	1.109609	GTACTCCCTCCGTTCCGAAT	58.890	55.000	0.00	0.00	0.00	3.34
3795	9585	0.038744	AGTACTCCCTCCGTTCCGAA	59.961	55.000	0.00	0.00	0.00	4.30
3796	9586	0.393537	GAGTACTCCCTCCGTTCCGA	60.394	60.000	12.13	0.00	0.00	4.55
3797	9587	0.394080	AGAGTACTCCCTCCGTTCCG	60.394	60.000	19.38	0.00	31.53	4.30
3798	9588	1.750206	GAAGAGTACTCCCTCCGTTCC	59.250	57.143	19.38	0.00	31.53	3.62
3799	9589	2.725637	AGAAGAGTACTCCCTCCGTTC	58.274	52.381	19.38	14.37	31.53	3.95
3800	9590	2.903375	AGAAGAGTACTCCCTCCGTT	57.097	50.000	19.38	5.89	31.53	4.44
3801	9591	3.458857	TCATAGAAGAGTACTCCCTCCGT	59.541	47.826	19.38	5.58	31.53	4.69
3802	9592	4.088056	TCATAGAAGAGTACTCCCTCCG	57.912	50.000	19.38	10.93	31.53	4.63
3803	9593	6.793505	TTTTCATAGAAGAGTACTCCCTCC	57.206	41.667	19.38	6.32	31.53	4.30
3878	9774	6.369065	GCAGGTAATCCGAGGTTAATATCTTG	59.631	42.308	0.00	0.00	39.05	3.02
4009	9905	8.310382	TGAAAAGTATGTTGGTGGATAAAATGG	58.690	33.333	0.00	0.00	0.00	3.16
4025	9921	7.688167	CAGTTTACGTGTATGCTGAAAAGTATG	59.312	37.037	0.00	0.00	0.00	2.39
4036	9932	4.078363	ACATTGCAGTTTACGTGTATGC	57.922	40.909	0.00	4.03	37.40	3.14
4043	9939	7.851822	AGAATTTACAACATTGCAGTTTACG	57.148	32.000	0.00	0.00	0.00	3.18
4104	10000	5.759273	GCAAGAGATAGATTGTTCATGCTCT	59.241	40.000	0.00	0.00	33.27	4.09
4107	10003	5.746307	TGCAAGAGATAGATTGTTCATGC	57.254	39.130	0.00	0.00	0.00	4.06
4112	10008	8.114331	TGAAAACATGCAAGAGATAGATTGTT	57.886	30.769	0.00	0.00	0.00	2.83
4142	10039	8.627403	AGCTAATTTGTTGATATCCATGAAGTG	58.373	33.333	0.00	0.00	0.00	3.16
4158	10055	8.903820	AGACAAAACAGTTAGAAGCTAATTTGT	58.096	29.630	12.66	12.66	37.00	2.83
4159	10056	9.736023	AAGACAAAACAGTTAGAAGCTAATTTG	57.264	29.630	0.00	0.00	32.13	2.32
4164	10061	8.181573	CACAAAAGACAAAACAGTTAGAAGCTA	58.818	33.333	0.00	0.00	0.00	3.32
4165	10062	7.029563	CACAAAAGACAAAACAGTTAGAAGCT	58.970	34.615	0.00	0.00	0.00	3.74
4198	10097	5.125417	GCCTTCAGGAAATACTGCATTTGTA	59.875	40.000	0.00	0.00	36.96	2.41
4250	10149	6.475076	TGCCAATAATAAGCAACAAATTAGCG	59.525	34.615	0.00	0.00	32.56	4.26
4351	10253	1.608590	CCGCACCAAGTGAAATCAAGT	59.391	47.619	0.00	0.00	35.23	3.16
4686	10588	9.014297	AGATAAGGAACCTTCAACAAAACATAG	57.986	33.333	9.50	0.00	37.47	2.23
4704	10606	2.290514	ACAGCTTGCAGCAAGATAAGGA	60.291	45.455	34.93	0.00	45.56	3.36
4968	10871	7.835822	TGGAAAAGAGAAACTGATTCACAAAA	58.164	30.769	0.44	0.00	40.72	2.44
5145	11048	7.403231	AGGGATGAAAGAAGTAAGAAGGACATA	59.597	37.037	0.00	0.00	0.00	2.29
5259	11164	3.097877	CCTTTGAAGTTGAAAGGTGCC	57.902	47.619	21.81	0.00	43.13	5.01
5361	11266	6.016276	AGTGTGCAGTAAGGTTTAAATTCCAG	60.016	38.462	0.00	0.00	0.00	3.86
5651	11556	5.882557	CACTATTTGCTGTCCCTATTTGTCT	59.117	40.000	0.00	0.00	0.00	3.41
5683	11588	7.044181	TGTGGATCTGCTTCTACTTTTGATAG	58.956	38.462	0.00	0.00	0.00	2.08
5711	11616	6.243811	ACCGAATACAATTTAGAAACGCAA	57.756	33.333	0.00	0.00	0.00	4.85
5713	11618	7.424452	CAGTTACCGAATACAATTTAGAAACGC	59.576	37.037	0.00	0.00	0.00	4.84
5719	11625	8.475331	AGTGTCAGTTACCGAATACAATTTAG	57.525	34.615	0.00	0.00	0.00	1.85
5780	11686	1.338674	CCCTATTGTCAACTGCACGGA	60.339	52.381	0.00	0.00	0.00	4.69
5848	11754	8.282455	TGAGTGGTACAATTTACAAACTGAAA	57.718	30.769	0.00	0.00	44.16	2.69
5868	11774	7.865889	TGTACTTGTAGTGTCAGTTATTGAGTG	59.134	37.037	0.00	0.00	36.21	3.51
5869	11775	7.948357	TGTACTTGTAGTGTCAGTTATTGAGT	58.052	34.615	0.00	0.00	36.21	3.41
5870	11776	8.812147	TTGTACTTGTAGTGTCAGTTATTGAG	57.188	34.615	0.00	0.00	36.21	3.02
5912	11818	4.868734	AGCCTTACACTCGCAACTAATTAC	59.131	41.667	0.00	0.00	0.00	1.89
5978	11884	2.096248	TCCGTGCAAAAGGTCTGTTTT	58.904	42.857	0.00	0.00	0.00	2.43
6025	11931	5.890334	ACGTGTGACAGAAAAATCAATGTT	58.110	33.333	0.00	0.00	0.00	2.71
6149	12056	7.093552	TGGGTTTACAGAATTGGATGTTAATGG	60.094	37.037	0.00	0.00	0.00	3.16
6332	12245	7.606131	CATTTGTTTGATTCATATCTGTTGCG	58.394	34.615	0.00	0.00	0.00	4.85
6398	12313	4.741781	AATGTCGCGCGCTTGCAC	62.742	61.111	30.48	18.57	39.07	4.57
6409	12324	2.349817	GCACCTGTGTTCTTCAATGTCG	60.350	50.000	0.00	0.00	0.00	4.35

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.