AutoCloner

Multiple sequence alignment - TraesCS1A01G203900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1A01G203900	chr1A	100.000	2864	0	0	1	2864	365619970	365617107	0.000000e+00	5289
1	TraesCS1A01G203900	chr1A	90.694	591	41	9	2263	2849	501996928	501996348	0.000000e+00	774
2	TraesCS1A01G203900	chr1A	91.026	78	6	1	2683	2760	481683626	481683550	1.400000e-18	104
3	TraesCS1A01G203900	chr1D	92.030	2296	123	22	1	2265	293616096	293613830	0.000000e+00	3171
4	TraesCS1A01G203900	chr1B	91.883	1774	73	35	518	2265	394894095	394892367	0.000000e+00	2412
5	TraesCS1A01G203900	chr1B	87.072	526	54	11	1	519	394896843	394896325	1.480000e-162	582
6	TraesCS1A01G203900	chr4A	91.167	634	26	17	2260	2864	624740317	624740949	0.000000e+00	833
7	TraesCS1A01G203900	chr6A	94.133	392	21	2	2263	2652	39133876	39134267	1.900000e-166	595
8	TraesCS1A01G203900	chr6A	97.156	211	6	0	2639	2849	39134314	39134524	9.760000e-95	357
9	TraesCS1A01G203900	chr6A	85.577	104	12	2	2677	2778	498542086	498542188	3.900000e-19	106
10	TraesCS1A01G203900	chr6A	96.667	60	2	0	2805	2864	39134523	39134582	1.820000e-17	100
11	TraesCS1A01G203900	chr6A	78.417	139	13	10	1707	1843	596229566	596229443	1.100000e-09	75
12	TraesCS1A01G203900	chr5A	85.306	490	55	14	2257	2743	20133603	20133128	9.220000e-135	490
13	TraesCS1A01G203900	chr5A	93.210	324	21	1	2263	2585	603055204	603054881	2.580000e-130	475
14	TraesCS1A01G203900	chr5A	97.087	206	6	0	2644	2849	603054552	603054347	5.870000e-92	348
15	TraesCS1A01G203900	chr5A	87.562	201	24	1	1008	1208	667197348	667197149	6.170000e-57	231
16	TraesCS1A01G203900	chr5A	96.667	60	2	0	2805	2864	603054348	603054289	1.820000e-17	100
17	TraesCS1A01G203900	chr2B	89.008	373	25	9	2267	2636	733841251	733840892	5.630000e-122	448
18	TraesCS1A01G203900	chr2B	94.444	234	11	1	2631	2864	733840366	733840135	2.710000e-95	359
19	TraesCS1A01G203900	chr4D	80.287	487	76	16	1008	1484	486918669	486918193	1.630000e-92	350
20	TraesCS1A01G203900	chr4B	80.165	484	72	16	1008	1484	621675778	621675312	9.830000e-90	340
21	TraesCS1A01G203900	chr7A	86.667	105	9	3	2683	2783	49059810	49059707	8.390000e-21	111

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1A01G203900	chr1A	365617107	365619970	2863	True	5289.000000	5289	100.000000	1	2864	1	chr1A.!!$R1	2863
1	TraesCS1A01G203900	chr1A	501996348	501996928	580	True	774.000000	774	90.694000	2263	2849	1	chr1A.!!$R3	586
2	TraesCS1A01G203900	chr1D	293613830	293616096	2266	True	3171.000000	3171	92.030000	1	2265	1	chr1D.!!$R1	2264
3	TraesCS1A01G203900	chr1B	394892367	394896843	4476	True	1497.000000	2412	89.477500	1	2265	2	chr1B.!!$R1	2264
4	TraesCS1A01G203900	chr4A	624740317	624740949	632	False	833.000000	833	91.167000	2260	2864	1	chr4A.!!$F1	604
5	TraesCS1A01G203900	chr6A	39133876	39134582	706	False	350.666667	595	95.985333	2263	2864	3	chr6A.!!$F2	601
6	TraesCS1A01G203900	chr5A	603054289	603055204	915	True	307.666667	475	95.654667	2263	2864	3	chr5A.!!$R3	601
7	TraesCS1A01G203900	chr2B	733840135	733841251	1116	True	403.500000	448	91.726000	2267	2864	2	chr2B.!!$R1	597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
644	2881	0.397535	CCTACCCAAAGGCATGCCAT	60.398	55.0	37.18	25.03	38.92	4.4	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1974	4240	0.238289	AATCCAAACTGTGAAGCGCG	59.762	50.0	0.0	0.0	0.0	6.86	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
27	28	4.320935	GCCCAGAAACACGAACATATTTGT	60.321	41.667	0.00	0.00	37.82	2.83
65	68	9.358872	CACATAGAATCTTATATACACGCACAT	57.641	33.333	0.00	0.00	0.00	3.21
66	69	9.574458	ACATAGAATCTTATATACACGCACATC	57.426	33.333	0.00	0.00	0.00	3.06
67	70	9.573133	CATAGAATCTTATATACACGCACATCA	57.427	33.333	0.00	0.00	0.00	3.07
81	84	5.178067	CACGCACATCATATTTCTATGAGCA	59.822	40.000	0.00	0.00	45.25	4.26
82	85	5.936372	ACGCACATCATATTTCTATGAGCAT	59.064	36.000	0.00	0.00	45.25	3.79
95	98	7.693969	TTCTATGAGCATCTTCGAGATATCA	57.306	36.000	5.32	11.06	35.45	2.15
97	100	8.115490	TCTATGAGCATCTTCGAGATATCAAA	57.885	34.615	5.32	0.00	34.98	2.69
104	107	6.144724	GCATCTTCGAGATATCAAACAGGTAC	59.855	42.308	5.32	0.00	32.12	3.34
112	115	9.347934	CGAGATATCAAACAGGTACAATATCTC	57.652	37.037	15.38	15.38	43.40	2.75
135	138	9.605275	TCTCAATATTAATGAAGTCAACAGAGG	57.395	33.333	0.00	0.00	0.00	3.69
147	150	0.462759	AACAGAGGCGCCTTCATAGC	60.463	55.000	33.34	17.04	0.00	2.97
153	156	2.411701	CGCCTTCATAGCCGACGA	59.588	61.111	0.00	0.00	0.00	4.20
158	161	2.343101	CCTTCATAGCCGACGAAAACA	58.657	47.619	0.00	0.00	0.00	2.83
168	171	1.641577	GACGAAAACATCTCCTCCCG	58.358	55.000	0.00	0.00	0.00	5.14
183	186	2.636830	CTCCCGCTGAAGAAACATCAT	58.363	47.619	0.00	0.00	0.00	2.45
198	201	7.930217	AGAAACATCATCGAAAAGTCTGAAAA	58.070	30.769	0.00	0.00	0.00	2.29
308	314	1.270550	GTTCACATGGTCAGGCCTTTG	59.729	52.381	0.00	0.00	38.35	2.77
345	351	4.082354	TCCACGGAAAGAGTAAAGAGCTAC	60.082	45.833	0.00	0.00	0.00	3.58
359	365	3.931578	AGAGCTACCAAACATCAGTCAC	58.068	45.455	0.00	0.00	0.00	3.67
376	382	5.699915	TCAGTCACTAGTCAGTACAGTACAC	59.300	44.000	13.37	3.47	32.21	2.90
430	436	8.043113	ACTGCATCTGATACTAAAAATCTGTCA	58.957	33.333	0.00	0.00	0.00	3.58
439	445	2.624316	AAAATCTGTCAGCGTGCATG	57.376	45.000	0.09	0.09	0.00	4.06
455	461	3.806521	GTGCATGCAGATTCAGTACCTAG	59.193	47.826	23.41	0.00	0.00	3.02
481	487	7.115095	GGCTACTCACTCAACGAATATATTCAC	59.885	40.741	22.22	0.79	36.61	3.18
535	2772	3.504906	CCAATGCATGACTTGTCTCTGTT	59.495	43.478	0.00	0.00	0.00	3.16
547	2784	3.950397	TGTCTCTGTTTGTTGTCACCTT	58.050	40.909	0.00	0.00	0.00	3.50
552	2789	3.126171	TCTGTTTGTTGTCACCTTCGTTG	59.874	43.478	0.00	0.00	0.00	4.10
560	2797	1.404035	GTCACCTTCGTTGCCTGTTTT	59.596	47.619	0.00	0.00	0.00	2.43
584	2821	0.727398	CTTGCTCGGGGTCGATTTTC	59.273	55.000	0.00	0.00	45.04	2.29
642	2879	3.939564	CCTACCCAAAGGCATGCC	58.060	61.111	30.12	30.12	36.11	4.40
644	2881	0.397535	CCTACCCAAAGGCATGCCAT	60.398	55.000	37.18	25.03	38.92	4.40
701	2938	6.616947	GCCAGTTGTTAATGCACTTTACATA	58.383	36.000	0.00	0.00	0.00	2.29
730	2967	4.499183	AGCAGTGCTATAACAGTTCAGTC	58.501	43.478	18.11	0.00	36.99	3.51
780	3017	6.454715	CGATATGATACATGATCGCACTTTGG	60.455	42.308	0.00	0.00	37.38	3.28
818	3056	7.897575	TTAGTTTTTGCTTTCTCTTTTGCAA	57.102	28.000	0.00	0.00	42.60	4.08
825	3063	4.202050	TGCTTTCTCTTTTGCAAGAACCTC	60.202	41.667	0.00	0.00	38.63	3.85
830	3068	0.951558	TTTTGCAAGAACCTCTCGCC	59.048	50.000	0.00	0.00	0.00	5.54
855	3093	1.146263	GGTATTGCTCCCAGACCCG	59.854	63.158	0.00	0.00	0.00	5.28
951	3189	2.753009	GATCTGCCACACAGCACCCA	62.753	60.000	0.00	0.00	46.76	4.51
952	3190	3.289834	CTGCCACACAGCACCCAC	61.290	66.667	0.00	0.00	40.19	4.61
976	3214	3.150848	TCGATCAACGATCAACTGAGG	57.849	47.619	4.95	0.00	46.45	3.86
979	3217	3.428180	CGATCAACGATCAACTGAGGAGT	60.428	47.826	4.95	0.00	45.77	3.85
1422	3666	3.753434	CAGACGGAGGCGCAGAGT	61.753	66.667	10.83	2.76	0.00	3.24
1502	3746	0.526524	CTCGACAGGAGGAATGACGC	60.527	60.000	0.00	0.00	39.22	5.19
1503	3747	1.519455	CGACAGGAGGAATGACGCC	60.519	63.158	0.00	0.00	0.00	5.68
1504	3748	1.519455	GACAGGAGGAATGACGCCG	60.519	63.158	0.00	0.00	0.00	6.46
1505	3749	2.202932	CAGGAGGAATGACGCCGG	60.203	66.667	0.00	0.00	0.00	6.13
1506	3750	4.162690	AGGAGGAATGACGCCGGC	62.163	66.667	19.07	19.07	0.00	6.13
1970	4236	2.341846	ATTATCCGTGGCATTTCCGT	57.658	45.000	0.00	0.00	37.80	4.69
1974	4240	2.696759	CCGTGGCATTTCCGTTCCC	61.697	63.158	0.00	0.00	37.80	3.97
1989	4255	1.781025	TTCCCGCGCTTCACAGTTTG	61.781	55.000	5.56	0.00	0.00	2.93
1995	4261	1.666888	GCGCTTCACAGTTTGGATTGG	60.667	52.381	0.00	0.00	0.00	3.16
2014	4280	3.571590	TGGTTTCTTTGCCCTGTAATGT	58.428	40.909	0.00	0.00	0.00	2.71
2025	4291	3.243267	GCCCTGTAATGTGTTTTCGTTGT	60.243	43.478	0.00	0.00	0.00	3.32
2044	4310	8.115491	TCGTTGTTTCTGAATAATCTCGTATG	57.885	34.615	0.00	0.00	0.00	2.39
2130	4403	7.796660	TCATTTGAATCGTGTAATAATAAGCGC	59.203	33.333	0.00	0.00	0.00	5.92
2140	4413	9.376171	CGTGTAATAATAAGCGCAATAAAATGA	57.624	29.630	11.47	0.00	0.00	2.57
2187	4461	1.364626	GCACTAGCAAGCACGAGCAT	61.365	55.000	7.77	0.00	41.72	3.79
2202	4476	4.507756	CACGAGCATGAATTTTCCGATCTA	59.492	41.667	0.00	0.00	0.00	1.98
2203	4477	4.508124	ACGAGCATGAATTTTCCGATCTAC	59.492	41.667	0.00	0.00	0.00	2.59
2217	4492	2.492088	CGATCTACACAGTCTGAACCCA	59.508	50.000	6.91	0.00	0.00	4.51
2252	4527	7.416664	GCTCTGGTGCAATTTTATTGGAGAATA	60.417	37.037	0.00	0.00	0.00	1.75
2284	4559	4.335315	TCGGATTTGCTATTTTACAGCTGG	59.665	41.667	19.93	0.00	39.83	4.85
2320	4595	9.651913	AATTTGTTTATGTTCAAGTTGTTGTCT	57.348	25.926	2.11	0.00	34.98	3.41
2323	4598	7.598278	TGTTTATGTTCAAGTTGTTGTCTGTT	58.402	30.769	2.11	0.00	34.98	3.16
2477	4752	1.559965	GCCTTCCCCGTTACCTCCTT	61.560	60.000	0.00	0.00	0.00	3.36
2564	4839	3.521529	CTCCCCGTCCATGGCGATC	62.522	68.421	24.22	7.77	0.00	3.69
2578	4854	2.427245	CGATCTGCGACCTTCCCCT	61.427	63.158	0.00	0.00	44.57	4.79
2579	4855	1.107538	CGATCTGCGACCTTCCCCTA	61.108	60.000	0.00	0.00	44.57	3.53
2586	4862	1.309006	GACCTTCCCCTACCGGAGA	59.691	63.158	9.46	0.00	32.13	3.71
2617	4893	1.687493	CCCTTCCTCTTCGCTCCCT	60.687	63.158	0.00	0.00	0.00	4.20
2623	4900	0.895530	CCTCTTCGCTCCCTGTTGTA	59.104	55.000	0.00	0.00	0.00	2.41
2652	4929	4.086457	GGTTGTTCCTCTCTCTCTCTCTT	58.914	47.826	0.00	0.00	0.00	2.85
2663	5469	2.126463	CTCTCTTTCCGTCGCGCA	60.126	61.111	8.75	0.00	0.00	6.09
2831	5637	2.024176	TTTCTGTAGGTGAGAGGGCA	57.976	50.000	0.00	0.00	0.00	5.36

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
16	17	6.200097	GTGTGTGTTTTCCCACAAATATGTTC	59.800	38.462	0.00	0.00	46.22	3.18
27	28	5.630121	AGATTCTATGTGTGTGTTTTCCCA	58.370	37.500	0.00	0.00	0.00	4.37
28	29	6.575162	AAGATTCTATGTGTGTGTTTTCCC	57.425	37.500	0.00	0.00	0.00	3.97
55	58	6.366061	GCTCATAGAAATATGATGTGCGTGTA	59.634	38.462	0.00	0.00	36.06	2.90
65	68	8.115490	TCTCGAAGATGCTCATAGAAATATGA	57.885	34.615	0.00	0.00	33.89	2.15
66	69	8.929827	ATCTCGAAGATGCTCATAGAAATATG	57.070	34.615	0.00	0.00	32.80	1.78
70	73	8.115490	TGATATCTCGAAGATGCTCATAGAAA	57.885	34.615	3.98	0.00	35.37	2.52
81	84	7.348080	TGTACCTGTTTGATATCTCGAAGAT	57.652	36.000	3.98	0.00	38.70	2.40
82	85	6.769134	TGTACCTGTTTGATATCTCGAAGA	57.231	37.500	3.98	0.00	0.00	2.87
112	115	7.128331	CGCCTCTGTTGACTTCATTAATATTG	58.872	38.462	0.00	0.00	0.00	1.90
115	118	4.570772	GCGCCTCTGTTGACTTCATTAATA	59.429	41.667	0.00	0.00	0.00	0.98
119	122	1.160137	GCGCCTCTGTTGACTTCATT	58.840	50.000	0.00	0.00	0.00	2.57
127	130	1.293924	CTATGAAGGCGCCTCTGTTG	58.706	55.000	32.93	16.50	0.00	3.33
129	132	1.144936	GCTATGAAGGCGCCTCTGT	59.855	57.895	32.93	20.30	0.00	3.41
147	150	1.641577	GGAGGAGATGTTTTCGTCGG	58.358	55.000	0.00	0.00	40.47	4.79
153	156	0.984230	TCAGCGGGAGGAGATGTTTT	59.016	50.000	0.00	0.00	0.00	2.43
158	161	1.208293	GTTTCTTCAGCGGGAGGAGAT	59.792	52.381	0.00	0.00	32.66	2.75
168	171	5.693814	ACTTTTCGATGATGTTTCTTCAGC	58.306	37.500	0.00	0.00	0.00	4.26
202	205	9.178758	GATACTAGGGTTCACATTTTTCTGATT	57.821	33.333	0.00	0.00	0.00	2.57
203	206	8.328758	TGATACTAGGGTTCACATTTTTCTGAT	58.671	33.333	0.00	0.00	0.00	2.90
247	250	0.541392	TGGTGGAACGATCCCATCAG	59.459	55.000	9.50	0.00	45.95	2.90
277	283	4.003648	GACCATGTGAACTGAGGTTAAGG	58.996	47.826	0.00	0.00	35.58	2.69
285	291	0.036732	GGCCTGACCATGTGAACTGA	59.963	55.000	0.00	0.00	38.86	3.41
308	314	1.153549	GTGGATCTGCAGTCCGACC	60.154	63.158	22.32	15.89	38.64	4.79
345	351	4.887748	ACTGACTAGTGACTGATGTTTGG	58.112	43.478	0.00	0.00	35.34	3.28
359	365	4.874396	TCATCGGTGTACTGTACTGACTAG	59.126	45.833	17.98	8.22	36.35	2.57
376	382	3.251729	CCATCAAGGTAAAGCATCATCGG	59.748	47.826	0.00	0.00	0.00	4.18
430	436	0.675837	ACTGAATCTGCATGCACGCT	60.676	50.000	18.46	2.98	0.00	5.07
439	445	3.892588	AGTAGCCTAGGTACTGAATCTGC	59.107	47.826	17.92	6.14	43.81	4.26
455	461	7.115095	GTGAATATATTCGTTGAGTGAGTAGCC	59.885	40.741	18.35	0.00	39.62	3.93
535	2772	0.736053	GGCAACGAAGGTGACAACAA	59.264	50.000	0.00	0.00	0.00	2.83
547	2784	3.188460	GCAAGATCTAAAACAGGCAACGA	59.812	43.478	0.00	0.00	46.39	3.85
552	2789	2.352960	CCGAGCAAGATCTAAAACAGGC	59.647	50.000	0.00	0.00	0.00	4.85
560	2797	0.106868	TCGACCCCGAGCAAGATCTA	60.107	55.000	0.00	0.00	40.30	1.98
602	2839	5.049405	GGCTTTATGCTATGTATGTGACACC	60.049	44.000	2.45	0.00	40.68	4.16
644	2881	9.119418	CCGAAAATATATGCATGGTAATATCCA	57.881	33.333	10.16	0.00	42.01	3.41
701	2938	1.048724	TTATAGCACTGCTCCCCGCT	61.049	55.000	6.86	0.00	40.44	5.52
717	2954	5.087323	TGGGAGAAGAGACTGAACTGTTAT	58.913	41.667	0.00	0.00	0.00	1.89
730	2967	2.234908	ACAACGAATCCTGGGAGAAGAG	59.765	50.000	0.00	0.00	0.00	2.85
780	3017	2.706555	AACTAAAGAGCAAAAGCGCC	57.293	45.000	2.29	0.00	0.00	6.53
818	3056	0.321122	CTTGCTTGGCGAGAGGTTCT	60.321	55.000	5.76	0.00	42.27	3.01
855	3093	3.712907	TTGTGTAGCCGGGAGCCC	61.713	66.667	2.18	0.00	45.47	5.19
976	3214	1.107945	GCTGGTCACTCCCTCTACTC	58.892	60.000	0.00	0.00	34.77	2.59
979	3217	0.680280	GTCGCTGGTCACTCCCTCTA	60.680	60.000	0.00	0.00	34.77	2.43
1489	3733	4.162690	GCCGGCGTCATTCCTCCT	62.163	66.667	12.58	0.00	0.00	3.69
1943	4209	6.092259	GGAAATGCCACGGATAATAGTGTATC	59.908	42.308	0.00	0.00	36.69	2.24
1970	4236	1.525077	AAACTGTGAAGCGCGGGAA	60.525	52.632	8.83	0.00	0.00	3.97
1974	4240	0.238289	AATCCAAACTGTGAAGCGCG	59.762	50.000	0.00	0.00	0.00	6.86
1989	4255	1.970640	ACAGGGCAAAGAAACCAATCC	59.029	47.619	0.00	0.00	0.00	3.01
1995	4261	4.584327	ACACATTACAGGGCAAAGAAAC	57.416	40.909	0.00	0.00	0.00	2.78
2014	4280	7.796660	CGAGATTATTCAGAAACAACGAAAACA	59.203	33.333	0.00	0.00	0.00	2.83
2025	4291	6.533723	ACAACGCATACGAGATTATTCAGAAA	59.466	34.615	0.00	0.00	43.93	2.52
2044	4310	0.452784	GCCGATGAAGAACACAACGC	60.453	55.000	0.00	0.00	0.00	4.84
2140	4413	3.320826	CCGAACCAAAAGACAAGGGAAAT	59.679	43.478	0.00	0.00	0.00	2.17
2184	4458	5.065218	ACTGTGTAGATCGGAAAATTCATGC	59.935	40.000	0.00	0.00	0.00	4.06
2187	4461	5.869344	CAGACTGTGTAGATCGGAAAATTCA	59.131	40.000	0.00	0.00	0.00	2.57
2202	4476	2.418746	GCGATATGGGTTCAGACTGTGT	60.419	50.000	1.59	0.00	0.00	3.72
2203	4477	2.205074	GCGATATGGGTTCAGACTGTG	58.795	52.381	1.59	0.00	0.00	3.66
2284	4559	9.766277	TTGAACATAAACAAATTGAAAAACAGC	57.234	25.926	0.00	0.00	0.00	4.40
2320	4595	2.279584	TCCGCGCAAGAACGAACA	60.280	55.556	8.75	0.00	43.02	3.18
2323	4598	1.076533	GAATCTCCGCGCAAGAACGA	61.077	55.000	8.75	0.00	43.02	3.85
2477	4752	6.317642	TCGAAACAGAGAGGACAAAATGAAAA	59.682	34.615	0.00	0.00	0.00	2.29
2564	4839	2.901042	GGTAGGGGAAGGTCGCAG	59.099	66.667	0.00	0.00	0.00	5.18
2586	4862	4.378961	AGAGGAAGGGGAGAGAAATCAAT	58.621	43.478	0.00	0.00	0.00	2.57
2617	4893	1.671845	GAACAACCAACCGCTACAACA	59.328	47.619	0.00	0.00	0.00	3.33
2623	4900	0.250338	GAGAGGAACAACCAACCGCT	60.250	55.000	0.00	0.00	42.04	5.52
2652	4929	3.334751	CACAAGTGCGCGACGGAA	61.335	61.111	12.10	0.00	0.00	4.30
2663	5469	0.108207	AAGAGCAGAGCAGCACAAGT	59.892	50.000	0.00	0.00	36.85	3.16
2831	5637	2.093711	GGGAACAAAACAACCACAAGCT	60.094	45.455	0.00	0.00	0.00	3.74

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.