Multiple sequence alignment - TraesCS1A01G203700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G203700 chr1A 100.000 3199 0 0 1 3199 365506499 365509697 0.000000e+00 5908
1 TraesCS1A01G203700 chr1A 85.578 1366 122 34 845 2203 365492136 365493433 0.000000e+00 1362
2 TraesCS1A01G203700 chr1A 98.575 421 6 0 1 421 569254321 569254741 0.000000e+00 745
3 TraesCS1A01G203700 chr1D 92.546 1905 84 22 419 2304 293523488 293525353 0.000000e+00 2678
4 TraesCS1A01G203700 chr1D 88.256 843 81 13 1364 2203 293459113 293459940 0.000000e+00 992
5 TraesCS1A01G203700 chr1D 84.894 470 40 17 837 1297 293458626 293459073 2.260000e-121 446
6 TraesCS1A01G203700 chr1B 89.712 2051 120 36 548 2548 394637192 394639201 0.000000e+00 2534
7 TraesCS1A01G203700 chr1B 89.216 612 60 3 1694 2304 394508569 394509175 0.000000e+00 760
8 TraesCS1A01G203700 chr1B 79.912 911 100 43 747 1641 394507703 394508546 2.750000e-165 592
9 TraesCS1A01G203700 chr6B 97.217 539 15 0 2661 3199 550371149 550370611 0.000000e+00 913
10 TraesCS1A01G203700 chr7D 94.881 547 13 2 2570 3101 140296980 140297526 0.000000e+00 841
11 TraesCS1A01G203700 chr7D 95.238 105 4 1 3095 3199 140300031 140300134 7.100000e-37 165
12 TraesCS1A01G203700 chr2B 91.055 559 35 5 2569 3112 691532143 691532701 0.000000e+00 741
13 TraesCS1A01G203700 chr2B 91.304 92 6 2 3109 3199 691691551 691691641 1.200000e-24 124
14 TraesCS1A01G203700 chr5A 98.337 421 7 0 1 421 119956845 119957265 0.000000e+00 739
15 TraesCS1A01G203700 chr5A 93.062 418 28 1 5 421 34375885 34376302 7.590000e-171 610
16 TraesCS1A01G203700 chr4A 97.625 421 10 0 1 421 624835981 624835561 0.000000e+00 723
17 TraesCS1A01G203700 chr7A 97.625 421 9 1 1 421 90024065 90023646 0.000000e+00 721
18 TraesCS1A01G203700 chr7A 97.387 421 11 0 1 421 139097218 139097638 0.000000e+00 717
19 TraesCS1A01G203700 chr7A 97.387 421 11 0 1 421 695922452 695922032 0.000000e+00 717
20 TraesCS1A01G203700 chr7A 86.301 146 14 6 1145 1287 722767986 722768128 1.540000e-33 154
21 TraesCS1A01G203700 chr3A 92.435 423 30 2 1 421 359576561 359576983 1.270000e-168 603
22 TraesCS1A01G203700 chr6A 91.169 419 36 1 4 421 358608519 358608101 4.630000e-158 568
23 TraesCS1A01G203700 chr5D 79.858 844 109 35 857 1672 472802661 472803471 7.750000e-156 560
24 TraesCS1A01G203700 chr5D 83.434 495 75 4 1738 2228 472803479 472803970 1.350000e-123 453
25 TraesCS1A01G203700 chr4B 84.982 566 49 6 2634 3199 460253724 460254253 2.810000e-150 542
26 TraesCS1A01G203700 chr4B 91.525 177 14 1 3023 3199 581522725 581522550 3.190000e-60 243
27 TraesCS1A01G203700 chr5B 84.735 452 62 4 1781 2228 580165870 580166318 2.260000e-121 446
28 TraesCS1A01G203700 chr5B 81.273 550 73 12 1001 1545 580165047 580165571 4.940000e-113 418


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G203700 chr1A 365506499 365509697 3198 False 5908.0 5908 100.0000 1 3199 1 chr1A.!!$F2 3198
1 TraesCS1A01G203700 chr1A 365492136 365493433 1297 False 1362.0 1362 85.5780 845 2203 1 chr1A.!!$F1 1358
2 TraesCS1A01G203700 chr1D 293523488 293525353 1865 False 2678.0 2678 92.5460 419 2304 1 chr1D.!!$F1 1885
3 TraesCS1A01G203700 chr1D 293458626 293459940 1314 False 719.0 992 86.5750 837 2203 2 chr1D.!!$F2 1366
4 TraesCS1A01G203700 chr1B 394637192 394639201 2009 False 2534.0 2534 89.7120 548 2548 1 chr1B.!!$F1 2000
5 TraesCS1A01G203700 chr1B 394507703 394509175 1472 False 676.0 760 84.5640 747 2304 2 chr1B.!!$F2 1557
6 TraesCS1A01G203700 chr6B 550370611 550371149 538 True 913.0 913 97.2170 2661 3199 1 chr6B.!!$R1 538
7 TraesCS1A01G203700 chr7D 140296980 140300134 3154 False 503.0 841 95.0595 2570 3199 2 chr7D.!!$F1 629
8 TraesCS1A01G203700 chr2B 691532143 691532701 558 False 741.0 741 91.0550 2569 3112 1 chr2B.!!$F1 543
9 TraesCS1A01G203700 chr5D 472802661 472803970 1309 False 506.5 560 81.6460 857 2228 2 chr5D.!!$F1 1371
10 TraesCS1A01G203700 chr4B 460253724 460254253 529 False 542.0 542 84.9820 2634 3199 1 chr4B.!!$F1 565
11 TraesCS1A01G203700 chr5B 580165047 580166318 1271 False 432.0 446 83.0040 1001 2228 2 chr5B.!!$F1 1227

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
307 308 0.032952 TTCGGCCGGTAGCATGTATC 59.967 55.000 27.83 0.0 46.50 2.24 F
376 377 0.106569 TGGATGCTGCCTTATGTGGG 60.107 55.000 0.00 0.0 0.00 4.61 F
404 405 0.746923 ATTTAAAGCCGGACGCCTCC 60.747 55.000 5.05 0.0 38.78 4.30 F
998 1037 1.073897 AGCTGAAGGTGAGTTGGCC 59.926 57.895 0.00 0.0 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1361 1430 0.036765 ACGATTAACCAAGGCAGCGA 60.037 50.0 0.00 0.0 0.0 4.93 R
1804 2042 0.108804 GGTCAATCGCACGAGGAAGA 60.109 55.0 0.00 0.0 0.0 2.87 R
1805 2043 0.389817 TGGTCAATCGCACGAGGAAG 60.390 55.0 0.00 0.0 0.0 3.46 R
2563 2841 0.179026 CTGGCCCAGGAGTCATGATG 60.179 60.0 6.31 0.0 0.0 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.272334 CGGGTCTTATGGCGCTGC 61.272 66.667 7.64 0.00 0.00 5.25
18 19 3.272334 GGGTCTTATGGCGCTGCG 61.272 66.667 19.17 19.17 0.00 5.18
19 20 2.511600 GGTCTTATGGCGCTGCGT 60.512 61.111 24.04 6.38 0.00 5.24
20 21 2.703409 GTCTTATGGCGCTGCGTG 59.297 61.111 24.04 7.33 0.00 5.34
21 22 2.511373 TCTTATGGCGCTGCGTGG 60.511 61.111 24.04 7.65 0.00 4.94
22 23 3.576356 CTTATGGCGCTGCGTGGG 61.576 66.667 24.04 4.75 0.00 4.61
23 24 4.089239 TTATGGCGCTGCGTGGGA 62.089 61.111 24.04 5.44 0.00 4.37
24 25 4.529219 TATGGCGCTGCGTGGGAG 62.529 66.667 24.04 0.00 0.00 4.30
31 32 4.711949 CTGCGTGGGAGCCTTGCT 62.712 66.667 0.00 0.00 43.88 3.91
34 35 3.052082 CGTGGGAGCCTTGCTGTG 61.052 66.667 0.00 0.00 39.88 3.66
35 36 2.674380 GTGGGAGCCTTGCTGTGG 60.674 66.667 0.00 0.00 39.88 4.17
36 37 3.177884 TGGGAGCCTTGCTGTGGT 61.178 61.111 0.00 0.00 39.88 4.16
37 38 2.360475 GGGAGCCTTGCTGTGGTC 60.360 66.667 0.00 0.00 39.88 4.02
38 39 2.360475 GGAGCCTTGCTGTGGTCC 60.360 66.667 0.00 3.13 39.88 4.46
39 40 2.431683 GAGCCTTGCTGTGGTCCA 59.568 61.111 0.00 0.00 39.88 4.02
40 41 1.001641 GAGCCTTGCTGTGGTCCAT 60.002 57.895 0.00 0.00 39.88 3.41
41 42 0.610232 GAGCCTTGCTGTGGTCCATT 60.610 55.000 0.00 0.00 39.88 3.16
42 43 0.178953 AGCCTTGCTGTGGTCCATTT 60.179 50.000 0.00 0.00 37.57 2.32
43 44 0.037975 GCCTTGCTGTGGTCCATTTG 60.038 55.000 0.00 0.00 0.00 2.32
44 45 0.604578 CCTTGCTGTGGTCCATTTGG 59.395 55.000 0.00 0.00 0.00 3.28
45 46 1.619654 CTTGCTGTGGTCCATTTGGA 58.380 50.000 0.00 0.00 43.08 3.53
53 54 2.034999 TCCATTTGGACCACCCGC 59.965 61.111 0.00 0.00 39.78 6.13
54 55 2.282816 CCATTTGGACCACCCGCA 60.283 61.111 0.00 0.00 37.93 5.69
55 56 1.905843 CCATTTGGACCACCCGCAA 60.906 57.895 0.00 0.00 37.93 4.85
56 57 1.257055 CCATTTGGACCACCCGCAAT 61.257 55.000 0.00 0.00 37.93 3.56
57 58 1.468985 CATTTGGACCACCCGCAATA 58.531 50.000 0.00 0.00 37.93 1.90
58 59 1.821753 CATTTGGACCACCCGCAATAA 59.178 47.619 0.00 0.00 37.93 1.40
59 60 1.540267 TTTGGACCACCCGCAATAAG 58.460 50.000 0.00 0.00 37.93 1.73
60 61 0.693622 TTGGACCACCCGCAATAAGA 59.306 50.000 0.00 0.00 37.93 2.10
61 62 0.916086 TGGACCACCCGCAATAAGAT 59.084 50.000 0.00 0.00 37.93 2.40
62 63 1.308998 GGACCACCCGCAATAAGATG 58.691 55.000 0.00 0.00 0.00 2.90
63 64 1.134220 GGACCACCCGCAATAAGATGA 60.134 52.381 0.00 0.00 0.00 2.92
64 65 1.940613 GACCACCCGCAATAAGATGAC 59.059 52.381 0.00 0.00 0.00 3.06
65 66 1.559682 ACCACCCGCAATAAGATGACT 59.440 47.619 0.00 0.00 0.00 3.41
66 67 2.769663 ACCACCCGCAATAAGATGACTA 59.230 45.455 0.00 0.00 0.00 2.59
67 68 3.391296 ACCACCCGCAATAAGATGACTAT 59.609 43.478 0.00 0.00 0.00 2.12
68 69 3.997021 CCACCCGCAATAAGATGACTATC 59.003 47.826 0.00 0.00 0.00 2.08
69 70 3.675225 CACCCGCAATAAGATGACTATCG 59.325 47.826 0.00 0.00 38.38 2.92
70 71 3.572682 ACCCGCAATAAGATGACTATCGA 59.427 43.478 0.00 0.00 38.38 3.59
71 72 4.169508 CCCGCAATAAGATGACTATCGAG 58.830 47.826 0.00 0.00 38.38 4.04
72 73 3.610242 CCGCAATAAGATGACTATCGAGC 59.390 47.826 0.00 0.00 38.38 5.03
73 74 4.229876 CGCAATAAGATGACTATCGAGCA 58.770 43.478 0.00 0.00 38.38 4.26
74 75 4.089208 CGCAATAAGATGACTATCGAGCAC 59.911 45.833 0.00 0.00 38.38 4.40
75 76 4.984785 GCAATAAGATGACTATCGAGCACA 59.015 41.667 0.00 0.00 38.38 4.57
76 77 5.463392 GCAATAAGATGACTATCGAGCACAA 59.537 40.000 0.00 0.00 38.38 3.33
77 78 6.018751 GCAATAAGATGACTATCGAGCACAAA 60.019 38.462 0.00 0.00 38.38 2.83
78 79 7.307632 GCAATAAGATGACTATCGAGCACAAAT 60.308 37.037 0.00 0.00 38.38 2.32
79 80 8.554528 CAATAAGATGACTATCGAGCACAAATT 58.445 33.333 0.00 0.00 38.38 1.82
80 81 6.992063 AAGATGACTATCGAGCACAAATTT 57.008 33.333 0.00 0.00 38.38 1.82
81 82 6.595772 AGATGACTATCGAGCACAAATTTC 57.404 37.500 0.00 0.00 38.38 2.17
82 83 5.525378 AGATGACTATCGAGCACAAATTTCC 59.475 40.000 0.00 0.00 38.38 3.13
83 84 4.832248 TGACTATCGAGCACAAATTTCCT 58.168 39.130 0.00 0.00 0.00 3.36
84 85 5.245531 TGACTATCGAGCACAAATTTCCTT 58.754 37.500 0.00 0.00 0.00 3.36
85 86 5.351465 TGACTATCGAGCACAAATTTCCTTC 59.649 40.000 0.00 0.00 0.00 3.46
86 87 5.491982 ACTATCGAGCACAAATTTCCTTCT 58.508 37.500 0.00 0.00 0.00 2.85
87 88 4.954092 ATCGAGCACAAATTTCCTTCTC 57.046 40.909 0.00 0.00 0.00 2.87
88 89 3.738982 TCGAGCACAAATTTCCTTCTCA 58.261 40.909 0.00 0.00 0.00 3.27
89 90 3.498397 TCGAGCACAAATTTCCTTCTCAC 59.502 43.478 0.00 0.00 0.00 3.51
90 91 3.365364 CGAGCACAAATTTCCTTCTCACC 60.365 47.826 0.00 0.00 0.00 4.02
91 92 2.893489 AGCACAAATTTCCTTCTCACCC 59.107 45.455 0.00 0.00 0.00 4.61
92 93 2.351738 GCACAAATTTCCTTCTCACCCG 60.352 50.000 0.00 0.00 0.00 5.28
93 94 2.228822 CACAAATTTCCTTCTCACCCGG 59.771 50.000 0.00 0.00 0.00 5.73
94 95 1.202348 CAAATTTCCTTCTCACCCGGC 59.798 52.381 0.00 0.00 0.00 6.13
95 96 0.698818 AATTTCCTTCTCACCCGGCT 59.301 50.000 0.00 0.00 0.00 5.52
96 97 0.035056 ATTTCCTTCTCACCCGGCTG 60.035 55.000 0.00 0.00 0.00 4.85
97 98 1.125093 TTTCCTTCTCACCCGGCTGA 61.125 55.000 0.00 0.00 0.00 4.26
98 99 1.827399 TTCCTTCTCACCCGGCTGAC 61.827 60.000 0.00 0.00 0.00 3.51
99 100 2.583441 CCTTCTCACCCGGCTGACA 61.583 63.158 0.00 0.00 0.00 3.58
100 101 1.599047 CTTCTCACCCGGCTGACAT 59.401 57.895 0.00 0.00 0.00 3.06
101 102 0.036010 CTTCTCACCCGGCTGACATT 60.036 55.000 0.00 0.00 0.00 2.71
102 103 1.207089 CTTCTCACCCGGCTGACATTA 59.793 52.381 0.00 0.00 0.00 1.90
103 104 1.496060 TCTCACCCGGCTGACATTAT 58.504 50.000 0.00 0.00 0.00 1.28
104 105 1.837439 TCTCACCCGGCTGACATTATT 59.163 47.619 0.00 0.00 0.00 1.40
105 106 2.238646 TCTCACCCGGCTGACATTATTT 59.761 45.455 0.00 0.00 0.00 1.40
106 107 3.016736 CTCACCCGGCTGACATTATTTT 58.983 45.455 0.00 0.00 0.00 1.82
107 108 3.426615 TCACCCGGCTGACATTATTTTT 58.573 40.909 0.00 0.00 0.00 1.94
108 109 4.590918 TCACCCGGCTGACATTATTTTTA 58.409 39.130 0.00 0.00 0.00 1.52
109 110 5.010933 TCACCCGGCTGACATTATTTTTAA 58.989 37.500 0.00 0.00 0.00 1.52
110 111 5.477291 TCACCCGGCTGACATTATTTTTAAA 59.523 36.000 0.00 0.00 0.00 1.52
111 112 6.153680 TCACCCGGCTGACATTATTTTTAAAT 59.846 34.615 0.00 0.00 0.00 1.40
112 113 6.255453 CACCCGGCTGACATTATTTTTAAATG 59.745 38.462 0.00 0.00 39.68 2.32
113 114 5.234116 CCCGGCTGACATTATTTTTAAATGC 59.766 40.000 0.00 0.00 37.77 3.56
114 115 5.234116 CCGGCTGACATTATTTTTAAATGCC 59.766 40.000 0.00 0.00 37.77 4.40
115 116 5.809562 CGGCTGACATTATTTTTAAATGCCA 59.190 36.000 0.00 0.00 37.77 4.92
116 117 6.237808 CGGCTGACATTATTTTTAAATGCCAC 60.238 38.462 0.00 0.00 37.77 5.01
117 118 6.818142 GGCTGACATTATTTTTAAATGCCACT 59.182 34.615 0.00 0.00 37.77 4.00
118 119 7.334171 GGCTGACATTATTTTTAAATGCCACTT 59.666 33.333 0.00 0.00 37.77 3.16
119 120 9.364989 GCTGACATTATTTTTAAATGCCACTTA 57.635 29.630 0.00 0.00 37.77 2.24
130 131 9.691362 TTTTAAATGCCACTTATTTCTTCAGAC 57.309 29.630 0.00 0.00 0.00 3.51
131 132 6.899393 AAATGCCACTTATTTCTTCAGACA 57.101 33.333 0.00 0.00 0.00 3.41
132 133 7.472334 AAATGCCACTTATTTCTTCAGACAT 57.528 32.000 0.00 0.00 0.00 3.06
133 134 5.885230 TGCCACTTATTTCTTCAGACATG 57.115 39.130 0.00 0.00 0.00 3.21
134 135 4.701651 TGCCACTTATTTCTTCAGACATGG 59.298 41.667 0.00 0.00 0.00 3.66
135 136 4.943705 GCCACTTATTTCTTCAGACATGGA 59.056 41.667 0.00 0.00 0.00 3.41
136 137 5.163713 GCCACTTATTTCTTCAGACATGGAC 60.164 44.000 0.00 0.00 0.00 4.02
137 138 5.939883 CCACTTATTTCTTCAGACATGGACA 59.060 40.000 0.00 0.00 0.00 4.02
138 139 6.128172 CCACTTATTTCTTCAGACATGGACAC 60.128 42.308 0.00 0.00 0.00 3.67
139 140 5.940470 ACTTATTTCTTCAGACATGGACACC 59.060 40.000 0.00 0.00 0.00 4.16
140 141 2.455674 TTCTTCAGACATGGACACCG 57.544 50.000 0.00 0.00 0.00 4.94
141 142 1.338107 TCTTCAGACATGGACACCGT 58.662 50.000 0.00 0.00 0.00 4.83
142 143 1.691976 TCTTCAGACATGGACACCGTT 59.308 47.619 0.00 0.00 0.00 4.44
143 144 1.800586 CTTCAGACATGGACACCGTTG 59.199 52.381 0.00 0.00 0.00 4.10
144 145 0.034756 TCAGACATGGACACCGTTGG 59.965 55.000 0.00 0.00 0.00 3.77
145 146 0.955428 CAGACATGGACACCGTTGGG 60.955 60.000 0.00 0.00 40.11 4.12
146 147 1.674322 GACATGGACACCGTTGGGG 60.674 63.158 0.00 0.00 43.62 4.96
147 148 2.119484 GACATGGACACCGTTGGGGA 62.119 60.000 0.00 0.00 39.97 4.81
148 149 1.074072 CATGGACACCGTTGGGGAA 59.926 57.895 0.00 0.00 39.97 3.97
149 150 0.538516 CATGGACACCGTTGGGGAAA 60.539 55.000 0.00 0.00 39.97 3.13
150 151 0.538746 ATGGACACCGTTGGGGAAAC 60.539 55.000 0.00 0.00 39.97 2.78
157 158 2.592287 GTTGGGGAAACGGCGTGA 60.592 61.111 15.70 0.00 0.00 4.35
158 159 1.969589 GTTGGGGAAACGGCGTGAT 60.970 57.895 15.70 5.63 0.00 3.06
159 160 1.969064 TTGGGGAAACGGCGTGATG 60.969 57.895 15.70 0.00 0.00 3.07
160 161 3.810896 GGGGAAACGGCGTGATGC 61.811 66.667 15.70 11.42 45.38 3.91
169 170 2.356313 GCGTGATGCGGATCGGAT 60.356 61.111 12.54 0.00 41.25 4.18
170 171 2.661566 GCGTGATGCGGATCGGATG 61.662 63.158 12.54 2.43 38.17 3.51
171 172 1.300156 CGTGATGCGGATCGGATGT 60.300 57.895 12.54 0.00 38.17 3.06
172 173 1.278172 CGTGATGCGGATCGGATGTC 61.278 60.000 12.54 0.00 38.17 3.06
173 174 1.007387 TGATGCGGATCGGATGTCG 60.007 57.895 12.54 0.48 38.17 4.35
188 189 4.207281 TCGAAGGCGATGGAGCGG 62.207 66.667 0.00 0.00 42.51 5.52
189 190 4.207281 CGAAGGCGATGGAGCGGA 62.207 66.667 0.00 0.00 40.82 5.54
190 191 2.423446 GAAGGCGATGGAGCGGAT 59.577 61.111 0.00 0.00 38.18 4.18
191 192 1.227674 GAAGGCGATGGAGCGGATT 60.228 57.895 0.00 0.00 38.18 3.01
192 193 1.224722 GAAGGCGATGGAGCGGATTC 61.225 60.000 0.00 0.00 38.18 2.52
193 194 2.978452 AAGGCGATGGAGCGGATTCG 62.978 60.000 0.00 0.00 38.18 3.34
194 195 3.038417 GCGATGGAGCGGATTCGG 61.038 66.667 0.00 0.00 36.79 4.30
195 196 2.728180 CGATGGAGCGGATTCGGA 59.272 61.111 0.00 0.00 36.79 4.55
196 197 1.661821 CGATGGAGCGGATTCGGAC 60.662 63.158 0.00 0.00 36.79 4.79
197 198 1.661821 GATGGAGCGGATTCGGACG 60.662 63.158 0.00 0.00 36.79 4.79
198 199 2.071844 GATGGAGCGGATTCGGACGA 62.072 60.000 0.00 0.00 36.79 4.20
199 200 1.464376 ATGGAGCGGATTCGGACGAT 61.464 55.000 0.00 0.00 36.79 3.73
200 201 1.371881 GGAGCGGATTCGGACGATC 60.372 63.158 0.00 0.00 43.95 3.69
201 202 1.371881 GAGCGGATTCGGACGATCC 60.372 63.158 0.00 10.91 39.36 3.36
202 203 2.071844 GAGCGGATTCGGACGATCCA 62.072 60.000 17.13 0.00 39.36 3.41
203 204 1.661821 GCGGATTCGGACGATCCAG 60.662 63.158 17.13 12.69 35.91 3.86
204 205 2.030551 CGGATTCGGACGATCCAGA 58.969 57.895 17.13 0.00 35.91 3.86
205 206 0.598562 CGGATTCGGACGATCCAGAT 59.401 55.000 17.13 1.18 35.91 2.90
206 207 1.000163 CGGATTCGGACGATCCAGATT 60.000 52.381 17.13 0.00 35.91 2.40
207 208 2.408050 GGATTCGGACGATCCAGATTG 58.592 52.381 14.15 0.00 35.91 2.67
208 209 2.035961 GGATTCGGACGATCCAGATTGA 59.964 50.000 14.15 0.00 35.91 2.57
209 210 3.306364 GGATTCGGACGATCCAGATTGAT 60.306 47.826 14.15 0.00 35.91 2.57
210 211 2.800881 TCGGACGATCCAGATTGATG 57.199 50.000 1.79 0.00 35.91 3.07
211 212 1.143305 CGGACGATCCAGATTGATGC 58.857 55.000 1.79 0.00 35.91 3.91
212 213 1.517242 GGACGATCCAGATTGATGCC 58.483 55.000 1.79 0.00 36.28 4.40
213 214 1.517242 GACGATCCAGATTGATGCCC 58.483 55.000 1.79 0.00 0.00 5.36
214 215 0.250038 ACGATCCAGATTGATGCCCG 60.250 55.000 1.79 0.00 0.00 6.13
215 216 1.572085 CGATCCAGATTGATGCCCGC 61.572 60.000 0.00 0.00 0.00 6.13
216 217 1.228367 ATCCAGATTGATGCCCGCC 60.228 57.895 0.00 0.00 0.00 6.13
217 218 1.998444 ATCCAGATTGATGCCCGCCA 61.998 55.000 0.00 0.00 0.00 5.69
218 219 2.484062 CCAGATTGATGCCCGCCAC 61.484 63.158 0.00 0.00 0.00 5.01
219 220 1.452651 CAGATTGATGCCCGCCACT 60.453 57.895 0.00 0.00 0.00 4.00
220 221 0.179048 CAGATTGATGCCCGCCACTA 60.179 55.000 0.00 0.00 0.00 2.74
221 222 0.107456 AGATTGATGCCCGCCACTAG 59.893 55.000 0.00 0.00 0.00 2.57
222 223 1.510480 GATTGATGCCCGCCACTAGC 61.510 60.000 0.00 0.00 38.52 3.42
223 224 2.965716 ATTGATGCCCGCCACTAGCC 62.966 60.000 0.00 0.00 38.78 3.93
224 225 3.866582 GATGCCCGCCACTAGCCT 61.867 66.667 0.00 0.00 38.78 4.58
225 226 4.181010 ATGCCCGCCACTAGCCTG 62.181 66.667 0.00 0.00 38.78 4.85
230 231 3.833645 CGCCACTAGCCTGCCGTA 61.834 66.667 0.00 0.00 38.78 4.02
231 232 2.107141 GCCACTAGCCTGCCGTAG 59.893 66.667 0.00 0.00 34.35 3.51
246 247 2.555199 CCGTAGGCTCTGATCTTTTGG 58.445 52.381 0.00 0.00 46.14 3.28
247 248 2.168521 CCGTAGGCTCTGATCTTTTGGA 59.831 50.000 0.00 0.00 46.14 3.53
248 249 3.190874 CGTAGGCTCTGATCTTTTGGAC 58.809 50.000 0.00 0.00 0.00 4.02
249 250 2.797177 AGGCTCTGATCTTTTGGACC 57.203 50.000 0.00 0.00 0.00 4.46
250 251 1.065854 AGGCTCTGATCTTTTGGACCG 60.066 52.381 0.00 0.00 0.00 4.79
251 252 1.373570 GCTCTGATCTTTTGGACCGG 58.626 55.000 0.00 0.00 0.00 5.28
252 253 1.373570 CTCTGATCTTTTGGACCGGC 58.626 55.000 0.00 0.00 0.00 6.13
253 254 0.690192 TCTGATCTTTTGGACCGGCA 59.310 50.000 0.00 0.00 0.00 5.69
254 255 0.804989 CTGATCTTTTGGACCGGCAC 59.195 55.000 0.00 0.00 0.00 5.01
255 256 0.109532 TGATCTTTTGGACCGGCACA 59.890 50.000 0.00 0.00 0.00 4.57
256 257 1.271871 TGATCTTTTGGACCGGCACAT 60.272 47.619 0.00 0.00 0.00 3.21
257 258 1.818674 GATCTTTTGGACCGGCACATT 59.181 47.619 0.00 0.00 0.00 2.71
258 259 0.958091 TCTTTTGGACCGGCACATTG 59.042 50.000 0.00 0.00 0.00 2.82
259 260 0.667184 CTTTTGGACCGGCACATTGC 60.667 55.000 0.00 0.00 44.08 3.56
260 261 1.112315 TTTTGGACCGGCACATTGCT 61.112 50.000 0.00 0.00 44.28 3.91
261 262 1.523154 TTTGGACCGGCACATTGCTC 61.523 55.000 0.00 0.00 44.28 4.26
262 263 2.045926 GGACCGGCACATTGCTCT 60.046 61.111 0.00 0.00 44.28 4.09
263 264 1.220749 GGACCGGCACATTGCTCTA 59.779 57.895 0.00 0.00 44.28 2.43
264 265 0.179045 GGACCGGCACATTGCTCTAT 60.179 55.000 0.00 0.00 44.28 1.98
265 266 0.940126 GACCGGCACATTGCTCTATG 59.060 55.000 0.00 0.00 44.28 2.23
266 267 0.253044 ACCGGCACATTGCTCTATGT 59.747 50.000 0.00 0.00 44.28 2.29
267 268 1.340017 ACCGGCACATTGCTCTATGTT 60.340 47.619 0.00 0.00 44.28 2.71
268 269 1.064505 CCGGCACATTGCTCTATGTTG 59.935 52.381 0.00 0.00 44.28 3.33
269 270 1.532505 CGGCACATTGCTCTATGTTGC 60.533 52.381 0.00 0.00 44.28 4.17
270 271 1.747355 GGCACATTGCTCTATGTTGCT 59.253 47.619 0.00 0.00 44.28 3.91
271 272 2.165030 GGCACATTGCTCTATGTTGCTT 59.835 45.455 0.00 0.00 44.28 3.91
272 273 3.378112 GGCACATTGCTCTATGTTGCTTA 59.622 43.478 0.00 0.00 44.28 3.09
273 274 4.037208 GGCACATTGCTCTATGTTGCTTAT 59.963 41.667 0.00 0.00 44.28 1.73
274 275 5.210715 GCACATTGCTCTATGTTGCTTATC 58.789 41.667 0.00 0.00 40.96 1.75
275 276 5.008415 GCACATTGCTCTATGTTGCTTATCT 59.992 40.000 0.00 0.00 40.96 1.98
276 277 6.656945 CACATTGCTCTATGTTGCTTATCTC 58.343 40.000 0.00 0.00 36.64 2.75
277 278 5.762218 ACATTGCTCTATGTTGCTTATCTCC 59.238 40.000 0.00 0.00 35.24 3.71
278 279 5.620738 TTGCTCTATGTTGCTTATCTCCT 57.379 39.130 0.00 0.00 0.00 3.69
279 280 5.207110 TGCTCTATGTTGCTTATCTCCTC 57.793 43.478 0.00 0.00 0.00 3.71
280 281 4.898265 TGCTCTATGTTGCTTATCTCCTCT 59.102 41.667 0.00 0.00 0.00 3.69
281 282 5.365025 TGCTCTATGTTGCTTATCTCCTCTT 59.635 40.000 0.00 0.00 0.00 2.85
282 283 5.695816 GCTCTATGTTGCTTATCTCCTCTTG 59.304 44.000 0.00 0.00 0.00 3.02
283 284 5.605534 TCTATGTTGCTTATCTCCTCTTGC 58.394 41.667 0.00 0.00 0.00 4.01
284 285 3.701205 TGTTGCTTATCTCCTCTTGCA 57.299 42.857 0.00 0.00 0.00 4.08
285 286 3.603532 TGTTGCTTATCTCCTCTTGCAG 58.396 45.455 0.00 0.00 0.00 4.41
286 287 2.941720 GTTGCTTATCTCCTCTTGCAGG 59.058 50.000 0.00 0.00 45.15 4.85
287 288 1.134280 TGCTTATCTCCTCTTGCAGGC 60.134 52.381 0.00 0.00 43.08 4.85
288 289 1.140652 GCTTATCTCCTCTTGCAGGCT 59.859 52.381 0.00 0.00 43.08 4.58
289 290 2.421248 GCTTATCTCCTCTTGCAGGCTT 60.421 50.000 0.00 0.00 43.08 4.35
290 291 3.465871 CTTATCTCCTCTTGCAGGCTTC 58.534 50.000 0.00 0.00 43.08 3.86
291 292 0.177604 ATCTCCTCTTGCAGGCTTCG 59.822 55.000 0.00 0.00 43.08 3.79
292 293 1.449246 CTCCTCTTGCAGGCTTCGG 60.449 63.158 0.00 0.00 43.08 4.30
293 294 3.130160 CCTCTTGCAGGCTTCGGC 61.130 66.667 0.00 0.00 34.56 5.54
303 304 3.272334 GCTTCGGCCGGTAGCATG 61.272 66.667 33.66 17.06 46.50 4.06
304 305 2.186903 CTTCGGCCGGTAGCATGT 59.813 61.111 27.83 0.00 46.50 3.21
305 306 1.440060 CTTCGGCCGGTAGCATGTA 59.560 57.895 27.83 0.00 46.50 2.29
306 307 0.033504 CTTCGGCCGGTAGCATGTAT 59.966 55.000 27.83 0.00 46.50 2.29
307 308 0.032952 TTCGGCCGGTAGCATGTATC 59.967 55.000 27.83 0.00 46.50 2.24
308 309 1.733041 CGGCCGGTAGCATGTATCG 60.733 63.158 20.10 0.00 46.50 2.92
309 310 1.366366 GGCCGGTAGCATGTATCGT 59.634 57.895 1.90 0.00 46.50 3.73
310 311 0.599558 GGCCGGTAGCATGTATCGTA 59.400 55.000 1.90 0.00 46.50 3.43
311 312 1.668047 GGCCGGTAGCATGTATCGTAC 60.668 57.143 1.90 0.00 46.50 3.67
312 313 1.668047 GCCGGTAGCATGTATCGTACC 60.668 57.143 1.90 0.00 42.97 3.34
313 314 1.884579 CCGGTAGCATGTATCGTACCT 59.115 52.381 0.00 0.00 33.96 3.08
314 315 2.295349 CCGGTAGCATGTATCGTACCTT 59.705 50.000 0.00 0.00 33.96 3.50
315 316 3.305964 CGGTAGCATGTATCGTACCTTG 58.694 50.000 0.00 0.00 33.96 3.61
316 317 3.650139 GGTAGCATGTATCGTACCTTGG 58.350 50.000 0.00 0.00 33.43 3.61
317 318 2.240493 AGCATGTATCGTACCTTGGC 57.760 50.000 0.00 0.00 0.00 4.52
318 319 1.762957 AGCATGTATCGTACCTTGGCT 59.237 47.619 0.00 0.00 0.00 4.75
319 320 2.963101 AGCATGTATCGTACCTTGGCTA 59.037 45.455 0.00 0.00 0.00 3.93
320 321 3.057734 GCATGTATCGTACCTTGGCTAC 58.942 50.000 0.00 0.00 0.00 3.58
321 322 3.305964 CATGTATCGTACCTTGGCTACG 58.694 50.000 12.28 12.28 38.67 3.51
322 323 1.677576 TGTATCGTACCTTGGCTACGG 59.322 52.381 15.88 0.00 38.02 4.02
323 324 0.670162 TATCGTACCTTGGCTACGGC 59.330 55.000 15.88 0.00 38.02 5.68
336 337 3.047613 GCTACGGCCGTTTTATCTTTG 57.952 47.619 38.94 10.80 0.00 2.77
337 338 2.417586 GCTACGGCCGTTTTATCTTTGT 59.582 45.455 38.94 9.19 0.00 2.83
338 339 3.120095 GCTACGGCCGTTTTATCTTTGTT 60.120 43.478 38.94 8.95 0.00 2.83
339 340 3.276882 ACGGCCGTTTTATCTTTGTTG 57.723 42.857 28.70 0.00 0.00 3.33
340 341 2.619646 ACGGCCGTTTTATCTTTGTTGT 59.380 40.909 28.70 0.00 0.00 3.32
341 342 3.067040 ACGGCCGTTTTATCTTTGTTGTT 59.933 39.130 28.70 0.00 0.00 2.83
342 343 4.275443 ACGGCCGTTTTATCTTTGTTGTTA 59.725 37.500 28.70 0.00 0.00 2.41
343 344 5.048573 ACGGCCGTTTTATCTTTGTTGTTAT 60.049 36.000 28.70 0.00 0.00 1.89
344 345 5.285134 CGGCCGTTTTATCTTTGTTGTTATG 59.715 40.000 19.50 0.00 0.00 1.90
345 346 6.153756 GGCCGTTTTATCTTTGTTGTTATGT 58.846 36.000 0.00 0.00 0.00 2.29
346 347 6.088883 GGCCGTTTTATCTTTGTTGTTATGTG 59.911 38.462 0.00 0.00 0.00 3.21
347 348 6.639279 GCCGTTTTATCTTTGTTGTTATGTGT 59.361 34.615 0.00 0.00 0.00 3.72
348 349 7.168469 GCCGTTTTATCTTTGTTGTTATGTGTT 59.832 33.333 0.00 0.00 0.00 3.32
349 350 8.476142 CCGTTTTATCTTTGTTGTTATGTGTTG 58.524 33.333 0.00 0.00 0.00 3.33
350 351 9.227490 CGTTTTATCTTTGTTGTTATGTGTTGA 57.773 29.630 0.00 0.00 0.00 3.18
353 354 9.522804 TTTATCTTTGTTGTTATGTGTTGAACC 57.477 29.630 0.00 0.00 0.00 3.62
354 355 6.767524 TCTTTGTTGTTATGTGTTGAACCT 57.232 33.333 0.00 0.00 0.00 3.50
355 356 6.559810 TCTTTGTTGTTATGTGTTGAACCTG 58.440 36.000 0.00 0.00 0.00 4.00
356 357 5.906113 TTGTTGTTATGTGTTGAACCTGT 57.094 34.783 0.00 0.00 0.00 4.00
357 358 5.906113 TGTTGTTATGTGTTGAACCTGTT 57.094 34.783 0.00 0.00 0.00 3.16
358 359 5.645624 TGTTGTTATGTGTTGAACCTGTTG 58.354 37.500 0.00 0.00 0.00 3.33
359 360 4.909696 TGTTATGTGTTGAACCTGTTGG 57.090 40.909 0.00 0.00 39.83 3.77
360 361 4.527944 TGTTATGTGTTGAACCTGTTGGA 58.472 39.130 0.00 0.00 37.04 3.53
361 362 5.136828 TGTTATGTGTTGAACCTGTTGGAT 58.863 37.500 0.00 0.00 37.04 3.41
362 363 5.009510 TGTTATGTGTTGAACCTGTTGGATG 59.990 40.000 0.00 0.00 37.04 3.51
363 364 1.680735 TGTGTTGAACCTGTTGGATGC 59.319 47.619 0.00 0.00 37.04 3.91
364 365 1.956477 GTGTTGAACCTGTTGGATGCT 59.044 47.619 0.00 0.00 37.04 3.79
365 366 1.955778 TGTTGAACCTGTTGGATGCTG 59.044 47.619 0.00 0.00 37.04 4.41
366 367 0.961019 TTGAACCTGTTGGATGCTGC 59.039 50.000 0.00 0.00 37.04 5.25
367 368 0.895100 TGAACCTGTTGGATGCTGCC 60.895 55.000 0.00 0.00 37.04 4.85
368 369 0.610232 GAACCTGTTGGATGCTGCCT 60.610 55.000 0.00 0.00 37.04 4.75
369 370 0.178953 AACCTGTTGGATGCTGCCTT 60.179 50.000 0.00 0.00 37.04 4.35
370 371 0.698238 ACCTGTTGGATGCTGCCTTA 59.302 50.000 0.00 0.00 37.04 2.69
371 372 1.285962 ACCTGTTGGATGCTGCCTTAT 59.714 47.619 0.00 0.00 37.04 1.73
372 373 1.679680 CCTGTTGGATGCTGCCTTATG 59.320 52.381 0.00 0.00 34.57 1.90
373 374 2.372264 CTGTTGGATGCTGCCTTATGT 58.628 47.619 0.00 0.00 0.00 2.29
374 375 2.093890 TGTTGGATGCTGCCTTATGTG 58.906 47.619 0.00 0.00 0.00 3.21
375 376 1.406539 GTTGGATGCTGCCTTATGTGG 59.593 52.381 0.00 0.00 0.00 4.17
376 377 0.106569 TGGATGCTGCCTTATGTGGG 60.107 55.000 0.00 0.00 0.00 4.61
391 392 9.825109 GCCTTATGTGGGCTTTATTAATTTAAA 57.175 29.630 0.00 0.00 45.57 1.52
400 401 6.727569 CTTTATTAATTTAAAGCCGGACGC 57.272 37.500 5.05 0.00 33.69 5.19
401 402 3.703286 ATTAATTTAAAGCCGGACGCC 57.297 42.857 5.05 0.00 38.78 5.68
402 403 2.406596 TAATTTAAAGCCGGACGCCT 57.593 45.000 5.05 0.00 38.78 5.52
403 404 1.092348 AATTTAAAGCCGGACGCCTC 58.908 50.000 5.05 0.00 38.78 4.70
404 405 0.746923 ATTTAAAGCCGGACGCCTCC 60.747 55.000 5.05 0.00 38.78 4.30
416 417 4.736896 GCCTCCGGCGTCTTCGTT 62.737 66.667 6.01 0.00 39.62 3.85
417 418 2.506438 CCTCCGGCGTCTTCGTTC 60.506 66.667 6.01 0.00 39.49 3.95
425 426 3.120442 CCGGCGTCTTCGTTCTAATTTTT 60.120 43.478 6.01 0.00 39.49 1.94
492 493 1.631072 CAGCGTATTTCCACGAGCG 59.369 57.895 0.00 0.00 44.69 5.03
535 537 2.681097 GCTTATTTTCAGCCTCCCGTCT 60.681 50.000 0.00 0.00 0.00 4.18
536 538 3.431766 GCTTATTTTCAGCCTCCCGTCTA 60.432 47.826 0.00 0.00 0.00 2.59
537 539 4.743955 GCTTATTTTCAGCCTCCCGTCTAT 60.744 45.833 0.00 0.00 0.00 1.98
843 866 3.818387 CCTGATGTGAATTATGCATCGC 58.182 45.455 0.19 0.00 41.17 4.58
940 973 3.011517 TCCTGCAAGCCCTCCTCC 61.012 66.667 0.00 0.00 0.00 4.30
948 981 4.228567 GCCCTCCTCCTGCGCTAC 62.229 72.222 9.73 0.00 0.00 3.58
952 985 3.417275 CTCCTCCTGCGCTACACCG 62.417 68.421 9.73 0.00 0.00 4.94
998 1037 1.073897 AGCTGAAGGTGAGTTGGCC 59.926 57.895 0.00 0.00 0.00 5.36
999 1038 1.073897 GCTGAAGGTGAGTTGGCCT 59.926 57.895 3.32 0.00 36.51 5.19
1314 1377 1.873591 GTCAGCCACTGTTGATTTCGT 59.126 47.619 0.00 0.00 34.05 3.85
1318 1381 2.948979 AGCCACTGTTGATTTCGTTTGA 59.051 40.909 0.00 0.00 0.00 2.69
1358 1427 3.742369 GTGGCACTTTTGATTTGGACATG 59.258 43.478 11.13 0.00 0.00 3.21
1359 1428 2.738314 GGCACTTTTGATTTGGACATGC 59.262 45.455 0.00 0.00 0.00 4.06
1360 1429 3.391965 GCACTTTTGATTTGGACATGCA 58.608 40.909 0.00 0.00 0.00 3.96
1361 1430 3.998341 GCACTTTTGATTTGGACATGCAT 59.002 39.130 0.00 0.00 0.00 3.96
1383 1454 1.539827 GCTGCCTTGGTTAATCGTGTT 59.460 47.619 0.00 0.00 0.00 3.32
1534 1607 3.420893 TCCAATTGACAGGGTAAGCAAG 58.579 45.455 7.12 0.00 0.00 4.01
1573 1782 6.913673 GGTCTATAAGACGATCTCTGAAACAC 59.086 42.308 0.00 0.00 45.96 3.32
1680 1915 5.114780 CAGCTGTGTTGACATTCTAGCTAT 58.885 41.667 5.25 0.00 29.88 2.97
1730 1966 2.220315 TTCGTTTTCGCGTGCAATAG 57.780 45.000 5.77 0.00 43.73 1.73
1736 1972 4.029625 CGTTTTCGCGTGCAATAGTTATTG 60.030 41.667 5.77 7.37 40.20 1.90
1741 1977 6.779115 TCGCGTGCAATAGTTATTGATAAT 57.221 33.333 14.41 0.00 44.40 1.28
1760 1996 1.310904 TAACAAAGACACGGTTGGGC 58.689 50.000 0.00 0.00 0.00 5.36
1778 2014 1.978617 CCTTGGTTGCCTTGGCGAT 60.979 57.895 4.73 0.00 0.00 4.58
2305 2547 6.316390 GTCGTGGAATAAAGGATTCAACATCT 59.684 38.462 5.82 0.00 45.15 2.90
2332 2574 1.003118 AGTTGATGGTGCCGTGTGTAT 59.997 47.619 0.00 0.00 0.00 2.29
2339 2581 1.657094 GGTGCCGTGTGTATTACGAAG 59.343 52.381 0.00 0.00 43.82 3.79
2340 2582 1.657094 GTGCCGTGTGTATTACGAAGG 59.343 52.381 0.00 0.00 43.82 3.46
2341 2583 1.273048 TGCCGTGTGTATTACGAAGGT 59.727 47.619 0.00 0.00 43.82 3.50
2342 2584 2.491298 TGCCGTGTGTATTACGAAGGTA 59.509 45.455 0.00 0.00 43.82 3.08
2344 2586 4.337836 TGCCGTGTGTATTACGAAGGTATA 59.662 41.667 0.00 0.00 43.82 1.47
2345 2587 5.163571 TGCCGTGTGTATTACGAAGGTATAA 60.164 40.000 0.00 0.00 43.82 0.98
2346 2588 5.173854 GCCGTGTGTATTACGAAGGTATAAC 59.826 44.000 0.00 0.00 43.82 1.89
2347 2589 6.264832 CCGTGTGTATTACGAAGGTATAACA 58.735 40.000 0.00 0.00 43.82 2.41
2348 2590 6.415867 CCGTGTGTATTACGAAGGTATAACAG 59.584 42.308 0.00 0.00 43.82 3.16
2349 2591 6.415867 CGTGTGTATTACGAAGGTATAACAGG 59.584 42.308 0.00 0.00 43.82 4.00
2350 2592 6.199719 GTGTGTATTACGAAGGTATAACAGGC 59.800 42.308 0.00 0.00 29.47 4.85
2351 2593 5.693555 GTGTATTACGAAGGTATAACAGGCC 59.306 44.000 0.00 0.00 29.47 5.19
2352 2594 5.363292 TGTATTACGAAGGTATAACAGGCCA 59.637 40.000 5.01 0.00 0.00 5.36
2353 2595 2.685850 ACGAAGGTATAACAGGCCAC 57.314 50.000 5.01 0.00 0.00 5.01
2354 2596 1.903860 ACGAAGGTATAACAGGCCACA 59.096 47.619 5.01 0.00 0.00 4.17
2355 2597 2.303600 ACGAAGGTATAACAGGCCACAA 59.696 45.455 5.01 0.00 0.00 3.33
2429 2687 7.792967 TGTTGTACACAAAACGAATGTATAACG 59.207 33.333 14.42 0.00 45.97 3.18
2434 2692 1.574134 AACGAATGTATAACGGGCCG 58.426 50.000 27.06 27.06 0.00 6.13
2509 2787 3.081804 AGGATGGAAAAACTACTTGCCG 58.918 45.455 0.00 0.00 0.00 5.69
2516 2794 3.492421 AAAACTACTTGCCGCATCATG 57.508 42.857 0.00 0.00 0.00 3.07
2540 2818 4.968812 TGATGCACACAATCATAACTGG 57.031 40.909 0.00 0.00 0.00 4.00
2542 2820 2.794103 TGCACACAATCATAACTGGCT 58.206 42.857 0.00 0.00 0.00 4.75
2548 2826 4.697352 ACACAATCATAACTGGCTGAAGTC 59.303 41.667 0.00 0.00 0.00 3.01
2549 2827 4.095483 CACAATCATAACTGGCTGAAGTCC 59.905 45.833 0.00 0.00 0.00 3.85
2550 2828 4.018960 ACAATCATAACTGGCTGAAGTCCT 60.019 41.667 0.00 0.00 0.00 3.85
2551 2829 3.616956 TCATAACTGGCTGAAGTCCTG 57.383 47.619 0.00 0.00 0.00 3.86
2552 2830 2.237143 TCATAACTGGCTGAAGTCCTGG 59.763 50.000 0.00 0.00 0.00 4.45
2553 2831 0.984230 TAACTGGCTGAAGTCCTGGG 59.016 55.000 0.00 0.00 0.00 4.45
2554 2832 2.045536 CTGGCTGAAGTCCTGGGC 60.046 66.667 0.00 0.00 0.00 5.36
2555 2833 3.635268 CTGGCTGAAGTCCTGGGCC 62.635 68.421 0.00 0.00 42.73 5.80
2556 2834 3.650950 GGCTGAAGTCCTGGGCCA 61.651 66.667 5.85 5.85 42.08 5.36
2557 2835 2.045536 GCTGAAGTCCTGGGCCAG 60.046 66.667 27.04 27.04 0.00 4.85
2565 2843 3.341629 CCTGGGCCAGGTCCACAT 61.342 66.667 39.34 0.00 45.82 3.21
2566 2844 2.273449 CTGGGCCAGGTCCACATC 59.727 66.667 26.34 0.00 32.12 3.06
2567 2845 2.531428 TGGGCCAGGTCCACATCA 60.531 61.111 9.47 0.00 29.54 3.07
2568 2846 1.929860 CTGGGCCAGGTCCACATCAT 61.930 60.000 26.34 0.00 32.12 2.45
3042 3335 4.751767 TTTCAACTGGGACAATTTTGCT 57.248 36.364 0.00 0.00 38.70 3.91
3102 5905 2.634940 TGAGGAGAAAGAGGTGTTGGAG 59.365 50.000 0.00 0.00 0.00 3.86
3112 5915 1.076549 GTGTTGGAGGCCATTGGGA 59.923 57.895 5.01 0.00 35.59 4.37
3180 5983 1.627864 TTTTTAAGGCCTGCTGGGAC 58.372 50.000 5.69 2.65 45.71 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.272334 GCAGCGCCATAAGACCCG 61.272 66.667 2.29 0.00 0.00 5.28
3 4 2.703409 CACGCAGCGCCATAAGAC 59.297 61.111 16.61 0.00 0.00 3.01
4 5 2.511373 CCACGCAGCGCCATAAGA 60.511 61.111 16.61 0.00 0.00 2.10
5 6 3.576356 CCCACGCAGCGCCATAAG 61.576 66.667 16.61 0.00 0.00 1.73
6 7 4.089239 TCCCACGCAGCGCCATAA 62.089 61.111 16.61 0.00 0.00 1.90
7 8 4.529219 CTCCCACGCAGCGCCATA 62.529 66.667 16.61 0.00 0.00 2.74
14 15 4.711949 AGCAAGGCTCCCACGCAG 62.712 66.667 0.00 0.00 30.62 5.18
17 18 3.052082 CACAGCAAGGCTCCCACG 61.052 66.667 0.00 0.00 36.40 4.94
18 19 2.674380 CCACAGCAAGGCTCCCAC 60.674 66.667 0.00 0.00 36.40 4.61
19 20 3.177884 ACCACAGCAAGGCTCCCA 61.178 61.111 0.00 0.00 36.40 4.37
20 21 2.360475 GACCACAGCAAGGCTCCC 60.360 66.667 0.00 0.00 36.40 4.30
21 22 2.360475 GGACCACAGCAAGGCTCC 60.360 66.667 0.00 0.00 36.40 4.70
22 23 0.610232 AATGGACCACAGCAAGGCTC 60.610 55.000 0.00 0.00 36.40 4.70
23 24 0.178953 AAATGGACCACAGCAAGGCT 60.179 50.000 0.00 0.00 40.77 4.58
24 25 0.037975 CAAATGGACCACAGCAAGGC 60.038 55.000 0.00 0.00 0.00 4.35
25 26 0.604578 CCAAATGGACCACAGCAAGG 59.395 55.000 0.00 0.00 37.39 3.61
26 27 1.619654 TCCAAATGGACCACAGCAAG 58.380 50.000 0.00 0.00 39.78 4.01
27 28 3.837893 TCCAAATGGACCACAGCAA 57.162 47.368 0.00 0.00 39.78 3.91
36 37 2.034999 GCGGGTGGTCCAAATGGA 59.965 61.111 0.00 0.00 43.08 3.41
37 38 1.257055 ATTGCGGGTGGTCCAAATGG 61.257 55.000 0.00 0.00 34.36 3.16
38 39 1.468985 TATTGCGGGTGGTCCAAATG 58.531 50.000 0.00 0.00 34.36 2.32
39 40 2.099405 CTTATTGCGGGTGGTCCAAAT 58.901 47.619 0.00 0.00 34.36 2.32
40 41 1.074084 TCTTATTGCGGGTGGTCCAAA 59.926 47.619 0.00 0.00 34.36 3.28
41 42 0.693622 TCTTATTGCGGGTGGTCCAA 59.306 50.000 0.00 0.00 34.36 3.53
42 43 0.916086 ATCTTATTGCGGGTGGTCCA 59.084 50.000 0.00 0.00 34.36 4.02
43 44 1.134220 TCATCTTATTGCGGGTGGTCC 60.134 52.381 0.00 0.00 0.00 4.46
44 45 1.940613 GTCATCTTATTGCGGGTGGTC 59.059 52.381 0.00 0.00 0.00 4.02
45 46 1.559682 AGTCATCTTATTGCGGGTGGT 59.440 47.619 0.00 0.00 0.00 4.16
46 47 2.332063 AGTCATCTTATTGCGGGTGG 57.668 50.000 0.00 0.00 0.00 4.61
47 48 3.675225 CGATAGTCATCTTATTGCGGGTG 59.325 47.826 0.00 0.00 0.00 4.61
48 49 3.572682 TCGATAGTCATCTTATTGCGGGT 59.427 43.478 0.00 0.00 37.40 5.28
49 50 4.169508 CTCGATAGTCATCTTATTGCGGG 58.830 47.826 0.00 0.00 37.40 6.13
50 51 3.610242 GCTCGATAGTCATCTTATTGCGG 59.390 47.826 0.00 0.00 37.40 5.69
51 52 4.089208 GTGCTCGATAGTCATCTTATTGCG 59.911 45.833 0.00 0.00 37.40 4.85
52 53 4.984785 TGTGCTCGATAGTCATCTTATTGC 59.015 41.667 0.00 0.00 37.40 3.56
53 54 7.468922 TTTGTGCTCGATAGTCATCTTATTG 57.531 36.000 0.00 0.00 37.40 1.90
54 55 8.668510 AATTTGTGCTCGATAGTCATCTTATT 57.331 30.769 0.00 0.00 37.40 1.40
55 56 8.668510 AAATTTGTGCTCGATAGTCATCTTAT 57.331 30.769 0.00 0.00 37.40 1.73
56 57 7.224753 GGAAATTTGTGCTCGATAGTCATCTTA 59.775 37.037 0.00 0.00 37.40 2.10
57 58 6.037610 GGAAATTTGTGCTCGATAGTCATCTT 59.962 38.462 0.00 0.00 37.40 2.40
58 59 5.525378 GGAAATTTGTGCTCGATAGTCATCT 59.475 40.000 0.00 0.00 37.40 2.90
59 60 5.525378 AGGAAATTTGTGCTCGATAGTCATC 59.475 40.000 0.00 0.00 37.40 2.92
60 61 5.431765 AGGAAATTTGTGCTCGATAGTCAT 58.568 37.500 0.00 0.00 37.40 3.06
61 62 4.832248 AGGAAATTTGTGCTCGATAGTCA 58.168 39.130 0.00 0.00 37.40 3.41
62 63 5.582665 AGAAGGAAATTTGTGCTCGATAGTC 59.417 40.000 0.00 0.00 37.40 2.59
63 64 5.491982 AGAAGGAAATTTGTGCTCGATAGT 58.508 37.500 0.00 0.00 37.40 2.12
64 65 5.582269 TGAGAAGGAAATTTGTGCTCGATAG 59.418 40.000 0.00 0.00 0.00 2.08
65 66 5.351465 GTGAGAAGGAAATTTGTGCTCGATA 59.649 40.000 0.00 0.00 0.00 2.92
66 67 4.154918 GTGAGAAGGAAATTTGTGCTCGAT 59.845 41.667 0.00 0.00 0.00 3.59
67 68 3.498397 GTGAGAAGGAAATTTGTGCTCGA 59.502 43.478 0.00 0.00 0.00 4.04
68 69 3.365364 GGTGAGAAGGAAATTTGTGCTCG 60.365 47.826 0.00 0.00 0.00 5.03
69 70 3.057245 GGGTGAGAAGGAAATTTGTGCTC 60.057 47.826 0.00 0.00 0.00 4.26
70 71 2.893489 GGGTGAGAAGGAAATTTGTGCT 59.107 45.455 0.00 0.00 0.00 4.40
71 72 2.351738 CGGGTGAGAAGGAAATTTGTGC 60.352 50.000 0.00 0.00 0.00 4.57
72 73 2.228822 CCGGGTGAGAAGGAAATTTGTG 59.771 50.000 0.00 0.00 0.00 3.33
73 74 2.514803 CCGGGTGAGAAGGAAATTTGT 58.485 47.619 0.00 0.00 0.00 2.83
74 75 1.202348 GCCGGGTGAGAAGGAAATTTG 59.798 52.381 2.18 0.00 0.00 2.32
75 76 1.075536 AGCCGGGTGAGAAGGAAATTT 59.924 47.619 4.72 0.00 0.00 1.82
76 77 0.698818 AGCCGGGTGAGAAGGAAATT 59.301 50.000 4.72 0.00 0.00 1.82
77 78 0.035056 CAGCCGGGTGAGAAGGAAAT 60.035 55.000 29.63 0.00 0.00 2.17
78 79 1.125093 TCAGCCGGGTGAGAAGGAAA 61.125 55.000 31.67 7.83 0.00 3.13
79 80 1.535444 TCAGCCGGGTGAGAAGGAA 60.535 57.895 31.67 8.65 0.00 3.36
80 81 2.119611 TCAGCCGGGTGAGAAGGA 59.880 61.111 31.67 9.46 0.00 3.36
81 82 1.903877 ATGTCAGCCGGGTGAGAAGG 61.904 60.000 35.42 8.45 0.00 3.46
82 83 0.036010 AATGTCAGCCGGGTGAGAAG 60.036 55.000 35.42 9.27 0.00 2.85
83 84 1.271856 TAATGTCAGCCGGGTGAGAA 58.728 50.000 35.42 26.12 0.00 2.87
84 85 1.496060 ATAATGTCAGCCGGGTGAGA 58.504 50.000 35.42 33.77 0.00 3.27
85 86 2.332063 AATAATGTCAGCCGGGTGAG 57.668 50.000 35.42 10.94 0.00 3.51
86 87 2.799126 AAATAATGTCAGCCGGGTGA 57.201 45.000 31.67 31.67 0.00 4.02
87 88 3.866883 AAAAATAATGTCAGCCGGGTG 57.133 42.857 27.73 27.73 0.00 4.61
88 89 5.986501 TTTAAAAATAATGTCAGCCGGGT 57.013 34.783 0.00 0.00 0.00 5.28
89 90 5.234116 GCATTTAAAAATAATGTCAGCCGGG 59.766 40.000 2.18 0.00 35.82 5.73
90 91 5.234116 GGCATTTAAAAATAATGTCAGCCGG 59.766 40.000 0.00 0.00 37.50 6.13
91 92 5.809562 TGGCATTTAAAAATAATGTCAGCCG 59.190 36.000 0.00 0.00 41.28 5.52
92 93 6.818142 AGTGGCATTTAAAAATAATGTCAGCC 59.182 34.615 3.37 0.00 45.25 4.85
93 94 7.832503 AGTGGCATTTAAAAATAATGTCAGC 57.167 32.000 3.37 0.63 45.25 4.26
104 105 9.691362 GTCTGAAGAAATAAGTGGCATTTAAAA 57.309 29.630 6.54 0.00 0.00 1.52
105 106 8.855110 TGTCTGAAGAAATAAGTGGCATTTAAA 58.145 29.630 6.54 0.00 0.00 1.52
106 107 8.402798 TGTCTGAAGAAATAAGTGGCATTTAA 57.597 30.769 6.54 0.00 0.00 1.52
107 108 7.994425 TGTCTGAAGAAATAAGTGGCATTTA 57.006 32.000 4.86 4.86 0.00 1.40
108 109 6.899393 TGTCTGAAGAAATAAGTGGCATTT 57.101 33.333 0.00 0.00 0.00 2.32
109 110 6.127535 CCATGTCTGAAGAAATAAGTGGCATT 60.128 38.462 0.00 0.00 0.00 3.56
110 111 5.359009 CCATGTCTGAAGAAATAAGTGGCAT 59.641 40.000 0.00 0.00 0.00 4.40
111 112 4.701651 CCATGTCTGAAGAAATAAGTGGCA 59.298 41.667 0.00 0.00 0.00 4.92
112 113 4.943705 TCCATGTCTGAAGAAATAAGTGGC 59.056 41.667 0.00 0.00 0.00 5.01
113 114 5.939883 TGTCCATGTCTGAAGAAATAAGTGG 59.060 40.000 0.00 0.00 0.00 4.00
114 115 6.128172 GGTGTCCATGTCTGAAGAAATAAGTG 60.128 42.308 0.00 0.00 0.00 3.16
115 116 5.940470 GGTGTCCATGTCTGAAGAAATAAGT 59.060 40.000 0.00 0.00 0.00 2.24
116 117 5.063944 CGGTGTCCATGTCTGAAGAAATAAG 59.936 44.000 0.00 0.00 0.00 1.73
117 118 4.935205 CGGTGTCCATGTCTGAAGAAATAA 59.065 41.667 0.00 0.00 0.00 1.40
118 119 4.020573 ACGGTGTCCATGTCTGAAGAAATA 60.021 41.667 0.00 0.00 0.00 1.40
119 120 3.244561 ACGGTGTCCATGTCTGAAGAAAT 60.245 43.478 0.00 0.00 0.00 2.17
120 121 2.104111 ACGGTGTCCATGTCTGAAGAAA 59.896 45.455 0.00 0.00 0.00 2.52
121 122 1.691976 ACGGTGTCCATGTCTGAAGAA 59.308 47.619 0.00 0.00 0.00 2.52
122 123 1.338107 ACGGTGTCCATGTCTGAAGA 58.662 50.000 0.00 0.00 0.00 2.87
123 124 1.800586 CAACGGTGTCCATGTCTGAAG 59.199 52.381 0.00 0.00 0.00 3.02
124 125 1.542328 CCAACGGTGTCCATGTCTGAA 60.542 52.381 0.00 0.00 0.00 3.02
125 126 0.034756 CCAACGGTGTCCATGTCTGA 59.965 55.000 0.00 0.00 0.00 3.27
126 127 0.955428 CCCAACGGTGTCCATGTCTG 60.955 60.000 0.00 0.00 0.00 3.51
127 128 1.374947 CCCAACGGTGTCCATGTCT 59.625 57.895 0.00 0.00 0.00 3.41
128 129 1.674322 CCCCAACGGTGTCCATGTC 60.674 63.158 0.00 0.00 0.00 3.06
129 130 1.710996 TTCCCCAACGGTGTCCATGT 61.711 55.000 0.00 0.00 0.00 3.21
130 131 0.538516 TTTCCCCAACGGTGTCCATG 60.539 55.000 0.00 0.00 0.00 3.66
131 132 0.538746 GTTTCCCCAACGGTGTCCAT 60.539 55.000 0.00 0.00 0.00 3.41
132 133 1.152922 GTTTCCCCAACGGTGTCCA 60.153 57.895 0.00 0.00 0.00 4.02
133 134 3.754068 GTTTCCCCAACGGTGTCC 58.246 61.111 0.00 0.00 0.00 4.02
140 141 1.969589 ATCACGCCGTTTCCCCAAC 60.970 57.895 0.00 0.00 0.00 3.77
141 142 1.969064 CATCACGCCGTTTCCCCAA 60.969 57.895 0.00 0.00 0.00 4.12
142 143 2.359354 CATCACGCCGTTTCCCCA 60.359 61.111 0.00 0.00 0.00 4.96
143 144 3.810896 GCATCACGCCGTTTCCCC 61.811 66.667 0.00 0.00 32.94 4.81
144 145 4.160635 CGCATCACGCCGTTTCCC 62.161 66.667 0.00 0.00 37.30 3.97
145 146 4.160635 CCGCATCACGCCGTTTCC 62.161 66.667 0.00 0.00 41.76 3.13
146 147 2.361427 GATCCGCATCACGCCGTTTC 62.361 60.000 0.00 0.00 41.76 2.78
147 148 2.435938 ATCCGCATCACGCCGTTT 60.436 55.556 0.00 0.00 41.76 3.60
148 149 2.890474 GATCCGCATCACGCCGTT 60.890 61.111 0.00 0.00 41.76 4.44
151 152 3.865929 ATCCGATCCGCATCACGCC 62.866 63.158 0.00 0.00 41.76 5.68
152 153 2.356313 ATCCGATCCGCATCACGC 60.356 61.111 0.00 0.00 41.76 5.34
153 154 1.278172 GACATCCGATCCGCATCACG 61.278 60.000 0.00 0.00 43.15 4.35
154 155 1.278172 CGACATCCGATCCGCATCAC 61.278 60.000 0.00 0.00 41.76 3.06
155 156 1.007387 CGACATCCGATCCGCATCA 60.007 57.895 0.00 0.00 41.76 3.07
156 157 1.285950 TCGACATCCGATCCGCATC 59.714 57.895 0.00 0.00 43.23 3.91
157 158 3.443588 TCGACATCCGATCCGCAT 58.556 55.556 0.00 0.00 43.23 4.73
172 173 2.978452 AATCCGCTCCATCGCCTTCG 62.978 60.000 0.00 0.00 0.00 3.79
173 174 1.224722 GAATCCGCTCCATCGCCTTC 61.225 60.000 0.00 0.00 0.00 3.46
174 175 1.227674 GAATCCGCTCCATCGCCTT 60.228 57.895 0.00 0.00 0.00 4.35
175 176 2.423446 GAATCCGCTCCATCGCCT 59.577 61.111 0.00 0.00 0.00 5.52
176 177 3.038417 CGAATCCGCTCCATCGCC 61.038 66.667 0.00 0.00 0.00 5.54
177 178 3.038417 CCGAATCCGCTCCATCGC 61.038 66.667 0.00 0.00 34.13 4.58
178 179 1.661821 GTCCGAATCCGCTCCATCG 60.662 63.158 0.00 0.00 35.19 3.84
179 180 1.661821 CGTCCGAATCCGCTCCATC 60.662 63.158 0.00 0.00 0.00 3.51
180 181 1.464376 ATCGTCCGAATCCGCTCCAT 61.464 55.000 0.00 0.00 0.00 3.41
181 182 2.071844 GATCGTCCGAATCCGCTCCA 62.072 60.000 0.00 0.00 0.00 3.86
182 183 1.371881 GATCGTCCGAATCCGCTCC 60.372 63.158 0.00 0.00 0.00 4.70
183 184 1.371881 GGATCGTCCGAATCCGCTC 60.372 63.158 0.00 0.00 0.00 5.03
184 185 2.076622 CTGGATCGTCCGAATCCGCT 62.077 60.000 0.00 0.00 40.17 5.52
185 186 1.661821 CTGGATCGTCCGAATCCGC 60.662 63.158 0.00 0.00 40.17 5.54
186 187 0.598562 ATCTGGATCGTCCGAATCCG 59.401 55.000 0.00 0.00 40.17 4.18
187 188 2.035961 TCAATCTGGATCGTCCGAATCC 59.964 50.000 0.00 2.80 40.17 3.01
188 189 3.371102 TCAATCTGGATCGTCCGAATC 57.629 47.619 0.00 0.00 40.17 2.52
189 190 3.657634 CATCAATCTGGATCGTCCGAAT 58.342 45.455 0.00 0.00 40.17 3.34
190 191 2.803133 GCATCAATCTGGATCGTCCGAA 60.803 50.000 0.00 0.00 40.17 4.30
191 192 1.269778 GCATCAATCTGGATCGTCCGA 60.270 52.381 0.00 0.00 40.17 4.55
192 193 1.143305 GCATCAATCTGGATCGTCCG 58.857 55.000 0.59 0.00 40.17 4.79
193 194 1.517242 GGCATCAATCTGGATCGTCC 58.483 55.000 0.00 0.00 36.96 4.79
194 195 1.517242 GGGCATCAATCTGGATCGTC 58.483 55.000 0.00 0.00 0.00 4.20
195 196 0.250038 CGGGCATCAATCTGGATCGT 60.250 55.000 0.00 0.00 0.00 3.73
196 197 1.572085 GCGGGCATCAATCTGGATCG 61.572 60.000 0.00 0.00 0.00 3.69
197 198 1.239968 GGCGGGCATCAATCTGGATC 61.240 60.000 0.00 0.00 0.00 3.36
198 199 1.228367 GGCGGGCATCAATCTGGAT 60.228 57.895 0.00 0.00 0.00 3.41
199 200 2.192979 GGCGGGCATCAATCTGGA 59.807 61.111 0.00 0.00 0.00 3.86
200 201 2.124193 TGGCGGGCATCAATCTGG 60.124 61.111 0.00 0.00 0.00 3.86
201 202 0.179048 TAGTGGCGGGCATCAATCTG 60.179 55.000 7.75 0.00 0.00 2.90
202 203 0.107456 CTAGTGGCGGGCATCAATCT 59.893 55.000 7.75 2.00 0.00 2.40
203 204 1.510480 GCTAGTGGCGGGCATCAATC 61.510 60.000 7.75 0.00 0.00 2.67
204 205 1.526917 GCTAGTGGCGGGCATCAAT 60.527 57.895 7.75 0.00 0.00 2.57
205 206 2.124736 GCTAGTGGCGGGCATCAA 60.125 61.111 7.75 0.00 0.00 2.57
206 207 4.175337 GGCTAGTGGCGGGCATCA 62.175 66.667 7.75 0.00 42.94 3.07
207 208 3.866582 AGGCTAGTGGCGGGCATC 61.867 66.667 7.75 1.71 44.18 3.91
208 209 4.181010 CAGGCTAGTGGCGGGCAT 62.181 66.667 7.75 0.00 44.18 4.40
214 215 2.107141 CTACGGCAGGCTAGTGGC 59.893 66.667 0.00 0.00 39.60 5.01
215 216 2.815308 CCTACGGCAGGCTAGTGG 59.185 66.667 0.00 0.00 37.70 4.00
226 227 2.168521 TCCAAAAGATCAGAGCCTACGG 59.831 50.000 0.00 0.00 0.00 4.02
227 228 3.190874 GTCCAAAAGATCAGAGCCTACG 58.809 50.000 0.00 0.00 0.00 3.51
228 229 3.536570 GGTCCAAAAGATCAGAGCCTAC 58.463 50.000 0.00 0.00 0.00 3.18
229 230 2.168521 CGGTCCAAAAGATCAGAGCCTA 59.831 50.000 0.00 0.00 0.00 3.93
230 231 1.065854 CGGTCCAAAAGATCAGAGCCT 60.066 52.381 0.00 0.00 0.00 4.58
231 232 1.373570 CGGTCCAAAAGATCAGAGCC 58.626 55.000 0.00 0.00 0.00 4.70
232 233 1.373570 CCGGTCCAAAAGATCAGAGC 58.626 55.000 0.00 0.00 0.00 4.09
233 234 1.339055 TGCCGGTCCAAAAGATCAGAG 60.339 52.381 1.90 0.00 0.00 3.35
234 235 0.690192 TGCCGGTCCAAAAGATCAGA 59.310 50.000 1.90 0.00 0.00 3.27
235 236 0.804989 GTGCCGGTCCAAAAGATCAG 59.195 55.000 1.90 0.00 0.00 2.90
236 237 0.109532 TGTGCCGGTCCAAAAGATCA 59.890 50.000 1.90 0.00 0.00 2.92
237 238 1.463674 ATGTGCCGGTCCAAAAGATC 58.536 50.000 1.90 0.00 0.00 2.75
238 239 1.545582 CAATGTGCCGGTCCAAAAGAT 59.454 47.619 1.90 0.00 0.00 2.40
239 240 0.958091 CAATGTGCCGGTCCAAAAGA 59.042 50.000 1.90 0.00 0.00 2.52
240 241 0.667184 GCAATGTGCCGGTCCAAAAG 60.667 55.000 1.90 0.00 37.42 2.27
241 242 1.112315 AGCAATGTGCCGGTCCAAAA 61.112 50.000 1.90 0.00 46.52 2.44
242 243 1.523154 GAGCAATGTGCCGGTCCAAA 61.523 55.000 1.90 0.00 46.52 3.28
243 244 1.971167 GAGCAATGTGCCGGTCCAA 60.971 57.895 1.90 0.00 46.52 3.53
244 245 1.549243 TAGAGCAATGTGCCGGTCCA 61.549 55.000 1.90 0.00 46.52 4.02
245 246 0.179045 ATAGAGCAATGTGCCGGTCC 60.179 55.000 1.90 0.00 46.52 4.46
246 247 0.940126 CATAGAGCAATGTGCCGGTC 59.060 55.000 1.90 0.00 46.52 4.79
247 248 0.253044 ACATAGAGCAATGTGCCGGT 59.747 50.000 1.90 0.00 46.52 5.28
248 249 1.064505 CAACATAGAGCAATGTGCCGG 59.935 52.381 0.00 0.00 46.52 6.13
249 250 1.532505 GCAACATAGAGCAATGTGCCG 60.533 52.381 0.00 0.00 46.52 5.69
250 251 1.747355 AGCAACATAGAGCAATGTGCC 59.253 47.619 0.00 0.00 46.52 5.01
251 252 3.498927 AAGCAACATAGAGCAATGTGC 57.501 42.857 0.77 6.63 45.46 4.57
252 253 6.293298 GGAGATAAGCAACATAGAGCAATGTG 60.293 42.308 0.77 0.00 39.98 3.21
253 254 5.762218 GGAGATAAGCAACATAGAGCAATGT 59.238 40.000 0.00 0.00 41.87 2.71
254 255 5.996513 AGGAGATAAGCAACATAGAGCAATG 59.003 40.000 0.00 0.00 0.00 2.82
255 256 6.043012 AGAGGAGATAAGCAACATAGAGCAAT 59.957 38.462 0.00 0.00 0.00 3.56
256 257 5.365025 AGAGGAGATAAGCAACATAGAGCAA 59.635 40.000 0.00 0.00 0.00 3.91
257 258 4.898265 AGAGGAGATAAGCAACATAGAGCA 59.102 41.667 0.00 0.00 0.00 4.26
258 259 5.467035 AGAGGAGATAAGCAACATAGAGC 57.533 43.478 0.00 0.00 0.00 4.09
259 260 5.695816 GCAAGAGGAGATAAGCAACATAGAG 59.304 44.000 0.00 0.00 0.00 2.43
260 261 5.129320 TGCAAGAGGAGATAAGCAACATAGA 59.871 40.000 0.00 0.00 0.00 1.98
261 262 5.363101 TGCAAGAGGAGATAAGCAACATAG 58.637 41.667 0.00 0.00 0.00 2.23
262 263 5.357742 TGCAAGAGGAGATAAGCAACATA 57.642 39.130 0.00 0.00 0.00 2.29
263 264 4.197750 CTGCAAGAGGAGATAAGCAACAT 58.802 43.478 0.00 0.00 34.74 2.71
264 265 3.603532 CTGCAAGAGGAGATAAGCAACA 58.396 45.455 0.00 0.00 34.74 3.33
265 266 2.941720 CCTGCAAGAGGAGATAAGCAAC 59.058 50.000 0.00 0.00 46.33 4.17
266 267 2.681976 GCCTGCAAGAGGAGATAAGCAA 60.682 50.000 0.00 0.00 46.33 3.91
267 268 1.134280 GCCTGCAAGAGGAGATAAGCA 60.134 52.381 0.00 0.00 46.33 3.91
268 269 1.140652 AGCCTGCAAGAGGAGATAAGC 59.859 52.381 0.00 0.00 46.33 3.09
269 270 3.465871 GAAGCCTGCAAGAGGAGATAAG 58.534 50.000 0.00 0.00 46.33 1.73
270 271 2.159043 CGAAGCCTGCAAGAGGAGATAA 60.159 50.000 0.00 0.00 46.33 1.75
271 272 1.410517 CGAAGCCTGCAAGAGGAGATA 59.589 52.381 0.00 0.00 46.33 1.98
272 273 0.177604 CGAAGCCTGCAAGAGGAGAT 59.822 55.000 0.00 0.00 46.33 2.75
273 274 1.593787 CGAAGCCTGCAAGAGGAGA 59.406 57.895 0.00 0.00 46.33 3.71
274 275 1.449246 CCGAAGCCTGCAAGAGGAG 60.449 63.158 0.00 0.00 46.33 3.69
275 276 2.665000 CCGAAGCCTGCAAGAGGA 59.335 61.111 0.00 0.00 46.33 3.71
276 277 3.130160 GCCGAAGCCTGCAAGAGG 61.130 66.667 0.00 0.00 46.13 3.69
286 287 2.638330 TACATGCTACCGGCCGAAGC 62.638 60.000 32.92 32.92 40.92 3.86
287 288 0.033504 ATACATGCTACCGGCCGAAG 59.966 55.000 30.73 24.03 40.92 3.79
288 289 0.032952 GATACATGCTACCGGCCGAA 59.967 55.000 30.73 13.89 40.92 4.30
289 290 1.663739 GATACATGCTACCGGCCGA 59.336 57.895 30.73 6.25 40.92 5.54
290 291 1.733041 CGATACATGCTACCGGCCG 60.733 63.158 21.04 21.04 40.92 6.13
291 292 0.599558 TACGATACATGCTACCGGCC 59.400 55.000 0.00 0.00 40.92 6.13
292 293 1.668047 GGTACGATACATGCTACCGGC 60.668 57.143 0.00 0.00 42.22 6.13
293 294 1.884579 AGGTACGATACATGCTACCGG 59.115 52.381 0.00 0.00 34.86 5.28
294 295 3.305964 CAAGGTACGATACATGCTACCG 58.694 50.000 0.00 0.00 34.86 4.02
295 296 3.650139 CCAAGGTACGATACATGCTACC 58.350 50.000 0.00 0.00 0.00 3.18
296 297 3.057734 GCCAAGGTACGATACATGCTAC 58.942 50.000 0.00 0.00 0.00 3.58
297 298 2.963101 AGCCAAGGTACGATACATGCTA 59.037 45.455 0.00 0.00 0.00 3.49
298 299 1.762957 AGCCAAGGTACGATACATGCT 59.237 47.619 0.00 0.00 0.00 3.79
299 300 2.240493 AGCCAAGGTACGATACATGC 57.760 50.000 0.00 0.00 0.00 4.06
316 317 2.417586 ACAAAGATAAAACGGCCGTAGC 59.582 45.455 34.44 19.84 38.76 3.58
317 318 4.083696 ACAACAAAGATAAAACGGCCGTAG 60.084 41.667 34.44 14.58 0.00 3.51
318 319 3.814283 ACAACAAAGATAAAACGGCCGTA 59.186 39.130 34.44 17.84 0.00 4.02
319 320 2.619646 ACAACAAAGATAAAACGGCCGT 59.380 40.909 28.70 28.70 0.00 5.68
320 321 3.276882 ACAACAAAGATAAAACGGCCG 57.723 42.857 26.86 26.86 0.00 6.13
321 322 6.088883 CACATAACAACAAAGATAAAACGGCC 59.911 38.462 0.00 0.00 0.00 6.13
322 323 6.639279 ACACATAACAACAAAGATAAAACGGC 59.361 34.615 0.00 0.00 0.00 5.68
323 324 8.476142 CAACACATAACAACAAAGATAAAACGG 58.524 33.333 0.00 0.00 0.00 4.44
324 325 9.227490 TCAACACATAACAACAAAGATAAAACG 57.773 29.630 0.00 0.00 0.00 3.60
327 328 9.522804 GGTTCAACACATAACAACAAAGATAAA 57.477 29.630 0.00 0.00 0.00 1.40
328 329 8.908903 AGGTTCAACACATAACAACAAAGATAA 58.091 29.630 0.00 0.00 0.00 1.75
329 330 8.349245 CAGGTTCAACACATAACAACAAAGATA 58.651 33.333 0.00 0.00 0.00 1.98
330 331 7.147915 ACAGGTTCAACACATAACAACAAAGAT 60.148 33.333 0.00 0.00 0.00 2.40
331 332 6.151985 ACAGGTTCAACACATAACAACAAAGA 59.848 34.615 0.00 0.00 0.00 2.52
332 333 6.329496 ACAGGTTCAACACATAACAACAAAG 58.671 36.000 0.00 0.00 0.00 2.77
333 334 6.274157 ACAGGTTCAACACATAACAACAAA 57.726 33.333 0.00 0.00 0.00 2.83
334 335 5.906113 ACAGGTTCAACACATAACAACAA 57.094 34.783 0.00 0.00 0.00 2.83
335 336 5.393569 CCAACAGGTTCAACACATAACAACA 60.394 40.000 0.00 0.00 0.00 3.33
336 337 5.040635 CCAACAGGTTCAACACATAACAAC 58.959 41.667 0.00 0.00 0.00 3.32
337 338 4.950475 TCCAACAGGTTCAACACATAACAA 59.050 37.500 0.00 0.00 0.00 2.83
338 339 4.527944 TCCAACAGGTTCAACACATAACA 58.472 39.130 0.00 0.00 0.00 2.41
339 340 5.460646 CATCCAACAGGTTCAACACATAAC 58.539 41.667 0.00 0.00 0.00 1.89
340 341 4.022416 GCATCCAACAGGTTCAACACATAA 60.022 41.667 0.00 0.00 0.00 1.90
341 342 3.505680 GCATCCAACAGGTTCAACACATA 59.494 43.478 0.00 0.00 0.00 2.29
342 343 2.297033 GCATCCAACAGGTTCAACACAT 59.703 45.455 0.00 0.00 0.00 3.21
343 344 1.680735 GCATCCAACAGGTTCAACACA 59.319 47.619 0.00 0.00 0.00 3.72
344 345 1.956477 AGCATCCAACAGGTTCAACAC 59.044 47.619 0.00 0.00 0.00 3.32
345 346 1.955778 CAGCATCCAACAGGTTCAACA 59.044 47.619 0.00 0.00 0.00 3.33
346 347 1.336240 GCAGCATCCAACAGGTTCAAC 60.336 52.381 0.00 0.00 0.00 3.18
347 348 0.961019 GCAGCATCCAACAGGTTCAA 59.039 50.000 0.00 0.00 0.00 2.69
348 349 0.895100 GGCAGCATCCAACAGGTTCA 60.895 55.000 0.00 0.00 0.00 3.18
349 350 0.610232 AGGCAGCATCCAACAGGTTC 60.610 55.000 0.00 0.00 0.00 3.62
350 351 0.178953 AAGGCAGCATCCAACAGGTT 60.179 50.000 0.00 0.00 0.00 3.50
351 352 0.698238 TAAGGCAGCATCCAACAGGT 59.302 50.000 0.00 0.00 0.00 4.00
352 353 1.679680 CATAAGGCAGCATCCAACAGG 59.320 52.381 0.00 0.00 0.00 4.00
353 354 2.098607 CACATAAGGCAGCATCCAACAG 59.901 50.000 0.00 0.00 0.00 3.16
354 355 2.093890 CACATAAGGCAGCATCCAACA 58.906 47.619 0.00 0.00 0.00 3.33
355 356 1.406539 CCACATAAGGCAGCATCCAAC 59.593 52.381 0.00 0.00 0.00 3.77
356 357 1.685803 CCCACATAAGGCAGCATCCAA 60.686 52.381 0.00 0.00 0.00 3.53
357 358 0.106569 CCCACATAAGGCAGCATCCA 60.107 55.000 0.00 0.00 0.00 3.41
358 359 2.724520 CCCACATAAGGCAGCATCC 58.275 57.895 0.00 0.00 0.00 3.51
377 378 5.684184 GGCGTCCGGCTTTAAATTAATAAAG 59.316 40.000 5.95 6.41 42.93 1.85
378 379 5.580661 GGCGTCCGGCTTTAAATTAATAAA 58.419 37.500 5.95 0.00 42.94 1.40
379 380 5.172460 GGCGTCCGGCTTTAAATTAATAA 57.828 39.130 5.95 0.00 42.94 1.40
380 381 4.816786 GGCGTCCGGCTTTAAATTAATA 57.183 40.909 5.95 0.00 42.94 0.98
381 382 3.703286 GGCGTCCGGCTTTAAATTAAT 57.297 42.857 5.95 0.00 42.94 1.40
401 402 0.169672 TTAGAACGAAGACGCCGGAG 59.830 55.000 5.05 3.72 43.96 4.63
402 403 0.813184 ATTAGAACGAAGACGCCGGA 59.187 50.000 5.05 0.00 43.96 5.14
403 404 1.636988 AATTAGAACGAAGACGCCGG 58.363 50.000 0.00 0.00 43.96 6.13
404 405 3.717350 AAAATTAGAACGAAGACGCCG 57.283 42.857 0.00 0.00 43.96 6.46
426 427 4.761739 AGATCGAACTCAAGCCATCAAAAA 59.238 37.500 0.00 0.00 0.00 1.94
427 428 4.154737 CAGATCGAACTCAAGCCATCAAAA 59.845 41.667 0.00 0.00 0.00 2.44
446 447 3.840991 CACCCAATGATCCAATCCAGAT 58.159 45.455 0.00 0.00 0.00 2.90
492 493 4.194720 ATGTCGTCCTCGCGGCTC 62.195 66.667 6.13 0.00 37.38 4.70
508 510 3.879892 GGAGGCTGAAAATAAGCTTCGAT 59.120 43.478 0.00 0.00 45.11 3.59
552 554 0.179048 TCATATGGTTCTGGCCTGCG 60.179 55.000 3.32 0.00 0.00 5.18
599 602 2.406401 CATGCTGCAGCTAACGCC 59.594 61.111 36.61 9.26 42.66 5.68
600 603 2.277756 GCATGCTGCAGCTAACGC 60.278 61.111 36.61 27.61 44.26 4.84
632 635 4.183686 CGCGGGCTTCTTGGCATG 62.184 66.667 0.00 0.00 43.83 4.06
678 681 2.042520 TTCCACGCGTCTGCACAAAC 62.043 55.000 9.86 0.00 42.97 2.93
778 795 4.776795 TCTTTATTTGCGGGGAGAAAAC 57.223 40.909 0.00 0.00 28.26 2.43
998 1037 1.718757 GGCAGCAAACCTCGCCATAG 61.719 60.000 0.00 0.00 44.25 2.23
999 1038 1.748879 GGCAGCAAACCTCGCCATA 60.749 57.895 0.00 0.00 44.25 2.74
1155 1196 0.798776 CGTCGTACGTGTAGAACCCT 59.201 55.000 16.05 0.00 36.74 4.34
1358 1427 0.740737 ATTAACCAAGGCAGCGATGC 59.259 50.000 19.23 19.23 0.00 3.91
1359 1428 1.003545 CGATTAACCAAGGCAGCGATG 60.004 52.381 0.00 0.00 0.00 3.84
1360 1429 1.299541 CGATTAACCAAGGCAGCGAT 58.700 50.000 0.00 0.00 0.00 4.58
1361 1430 0.036765 ACGATTAACCAAGGCAGCGA 60.037 50.000 0.00 0.00 0.00 4.93
1493 1566 0.564171 TGGGTCCCCGTCCATAGTAT 59.436 55.000 5.13 0.00 39.42 2.12
1534 1607 7.599245 CGTCTTATAGACCATAAACTTGGGATC 59.401 40.741 1.52 0.00 42.12 3.36
1573 1782 7.922278 CCAATATACTGTTTTTCATGTGGATGG 59.078 37.037 0.00 0.00 0.00 3.51
1680 1915 1.337071 GATCAGGTCGTGATTAGCGGA 59.663 52.381 9.31 0.00 46.64 5.54
1736 1972 5.675323 GCCCAACCGTGTCTTTGTTATTATC 60.675 44.000 0.00 0.00 0.00 1.75
1741 1977 1.310904 GCCCAACCGTGTCTTTGTTA 58.689 50.000 0.00 0.00 0.00 2.41
1751 1987 2.520741 CAACCAAGGCCCAACCGT 60.521 61.111 0.00 0.00 46.52 4.83
1760 1996 1.978617 ATCGCCAAGGCAACCAAGG 60.979 57.895 12.19 0.00 42.06 3.61
1770 2006 3.264947 TCAGAACAATCTCATCGCCAAG 58.735 45.455 0.00 0.00 32.03 3.61
1803 2041 1.272781 GTCAATCGCACGAGGAAGAG 58.727 55.000 0.00 0.00 0.00 2.85
1804 2042 0.108804 GGTCAATCGCACGAGGAAGA 60.109 55.000 0.00 0.00 0.00 2.87
1805 2043 0.389817 TGGTCAATCGCACGAGGAAG 60.390 55.000 0.00 0.00 0.00 3.46
1883 2125 0.959372 CGTCCGTGGACACTAGGTCT 60.959 60.000 18.54 0.00 46.16 3.85
1952 2194 2.515057 TGGCACGACGGCTTGTTT 60.515 55.556 0.00 0.00 41.89 2.83
2305 2547 2.236146 ACGGCACCATCAACTAGATCAA 59.764 45.455 0.00 0.00 33.72 2.57
2312 2554 0.394938 TACACACGGCACCATCAACT 59.605 50.000 0.00 0.00 0.00 3.16
2332 2574 3.514706 TGTGGCCTGTTATACCTTCGTAA 59.485 43.478 3.32 0.00 0.00 3.18
2339 2581 3.067684 ACAGTTGTGGCCTGTTATACC 57.932 47.619 3.32 0.00 40.14 2.73
2340 2582 7.270047 TCTATTACAGTTGTGGCCTGTTATAC 58.730 38.462 3.32 0.00 42.83 1.47
2341 2583 7.426606 TCTATTACAGTTGTGGCCTGTTATA 57.573 36.000 3.32 2.53 42.83 0.98
2342 2584 6.308015 TCTATTACAGTTGTGGCCTGTTAT 57.692 37.500 3.32 1.32 42.83 1.89
2344 2586 4.634012 TCTATTACAGTTGTGGCCTGTT 57.366 40.909 3.32 0.00 42.83 3.16
2345 2587 4.844349 ATCTATTACAGTTGTGGCCTGT 57.156 40.909 3.32 1.26 44.90 4.00
2346 2588 6.767902 ACATAATCTATTACAGTTGTGGCCTG 59.232 38.462 3.32 0.00 36.01 4.85
2347 2589 6.900194 ACATAATCTATTACAGTTGTGGCCT 58.100 36.000 3.32 0.00 0.00 5.19
2348 2590 8.671384 TTACATAATCTATTACAGTTGTGGCC 57.329 34.615 0.00 0.00 0.00 5.36
2349 2591 9.931210 GTTTACATAATCTATTACAGTTGTGGC 57.069 33.333 0.00 0.00 0.00 5.01
2388 2630 7.315890 TGTGTACAACAAAACAATTGACATGA 58.684 30.769 13.59 0.00 35.24 3.07
2389 2631 7.517343 TGTGTACAACAAAACAATTGACATG 57.483 32.000 13.59 9.67 35.24 3.21
2407 2660 6.242829 CCCGTTATACATTCGTTTTGTGTAC 58.757 40.000 0.00 0.00 31.79 2.90
2425 2683 3.067480 GACACCGATCGGCCCGTTA 62.067 63.158 33.62 0.00 39.32 3.18
2429 2687 3.615509 TTTGGACACCGATCGGCCC 62.616 63.158 33.62 28.71 39.32 5.80
2434 2692 1.396996 CGAATGGTTTGGACACCGATC 59.603 52.381 0.00 0.00 40.09 3.69
2485 2763 5.182380 CGGCAAGTAGTTTTTCCATCCTTTA 59.818 40.000 0.00 0.00 0.00 1.85
2516 2794 4.738252 CAGTTATGATTGTGTGCATCATGC 59.262 41.667 1.35 1.35 45.29 4.06
2523 2801 2.749076 TCAGCCAGTTATGATTGTGTGC 59.251 45.455 0.00 0.00 0.00 4.57
2537 2815 2.045536 GCCCAGGACTTCAGCCAG 60.046 66.667 0.00 0.00 0.00 4.85
2540 2818 2.045536 CTGGCCCAGGACTTCAGC 60.046 66.667 1.63 0.00 0.00 4.26
2549 2827 1.929860 ATGATGTGGACCTGGCCCAG 61.930 60.000 0.33 2.91 33.75 4.45
2550 2828 1.930133 ATGATGTGGACCTGGCCCA 60.930 57.895 0.00 0.00 0.00 5.36
2551 2829 1.454479 CATGATGTGGACCTGGCCC 60.454 63.158 0.00 0.00 0.00 5.80
2552 2830 0.749454 GTCATGATGTGGACCTGGCC 60.749 60.000 0.00 0.00 0.00 5.36
2553 2831 0.254178 AGTCATGATGTGGACCTGGC 59.746 55.000 0.00 0.00 34.58 4.85
2554 2832 1.134280 GGAGTCATGATGTGGACCTGG 60.134 57.143 0.00 0.00 34.58 4.45
2555 2833 1.836166 AGGAGTCATGATGTGGACCTG 59.164 52.381 0.00 0.00 34.58 4.00
2556 2834 1.836166 CAGGAGTCATGATGTGGACCT 59.164 52.381 0.00 0.00 34.58 3.85
2557 2835 1.134280 CCAGGAGTCATGATGTGGACC 60.134 57.143 6.31 0.00 34.58 4.46
2558 2836 1.134280 CCCAGGAGTCATGATGTGGAC 60.134 57.143 6.31 0.00 0.00 4.02
2559 2837 1.206878 CCCAGGAGTCATGATGTGGA 58.793 55.000 6.31 0.00 0.00 4.02
2560 2838 0.465097 GCCCAGGAGTCATGATGTGG 60.465 60.000 6.31 3.73 0.00 4.17
2561 2839 0.465097 GGCCCAGGAGTCATGATGTG 60.465 60.000 6.31 0.00 0.00 3.21
2562 2840 0.915872 TGGCCCAGGAGTCATGATGT 60.916 55.000 6.31 0.00 0.00 3.06
2563 2841 0.179026 CTGGCCCAGGAGTCATGATG 60.179 60.000 6.31 0.00 0.00 3.07
2564 2842 2.228711 CTGGCCCAGGAGTCATGAT 58.771 57.895 6.31 0.00 0.00 2.45
2565 2843 3.731547 CTGGCCCAGGAGTCATGA 58.268 61.111 6.31 0.00 0.00 3.07
2819 3112 0.678048 ATTCGCAACCTGAGAAGCCC 60.678 55.000 0.00 0.00 39.41 5.19
2828 3121 3.545703 CCATCCTTTAGATTCGCAACCT 58.454 45.455 0.00 0.00 30.59 3.50
3042 3335 3.554934 AGCCAAATCACACTGACTGAAA 58.445 40.909 0.00 0.00 0.00 2.69
3102 5905 0.977108 TTGGCATCTTCCCAATGGCC 60.977 55.000 0.00 0.00 46.13 5.36
3112 5915 1.260544 GCCTTGTCCTTTGGCATCTT 58.739 50.000 0.00 0.00 45.46 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.