Multiple sequence alignment - TraesCS1A01G203500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G203500 chr1A 100.000 3347 0 0 1 3347 365450060 365453406 0.000000e+00 6181.0
1 TraesCS1A01G203500 chr1A 91.835 943 62 5 2402 3344 223327833 223328760 0.000000e+00 1301.0
2 TraesCS1A01G203500 chr1A 91.304 943 67 5 2402 3344 223276088 223277015 0.000000e+00 1273.0
3 TraesCS1A01G203500 chr1D 96.004 926 25 4 1480 2402 293456299 293457215 0.000000e+00 1495.0
4 TraesCS1A01G203500 chr1D 93.000 300 20 1 1 300 293456001 293456299 1.430000e-118 436.0
5 TraesCS1A01G203500 chr7A 92.495 946 67 2 2400 3345 398953257 398954198 0.000000e+00 1351.0
6 TraesCS1A01G203500 chr7A 89.601 952 85 12 2400 3344 370028532 370027588 0.000000e+00 1197.0
7 TraesCS1A01G203500 chr7A 88.971 952 87 16 2402 3344 350802622 350801680 0.000000e+00 1160.0
8 TraesCS1A01G203500 chr3A 92.487 945 67 3 2402 3345 297561400 297562341 0.000000e+00 1349.0
9 TraesCS1A01G203500 chr6A 89.915 942 89 5 2402 3343 274265385 274264450 0.000000e+00 1208.0
10 TraesCS1A01G203500 chr4A 88.679 954 88 18 2402 3345 273809506 273810449 0.000000e+00 1146.0
11 TraesCS1A01G203500 chr2A 88.353 953 93 14 2402 3345 331496159 331495216 0.000000e+00 1129.0
12 TraesCS1A01G203500 chr1B 89.273 839 79 9 1 830 394444732 394445568 0.000000e+00 1040.0
13 TraesCS1A01G203500 chr1B 85.542 83 12 0 559 641 95368047 95368129 1.650000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G203500 chr1A 365450060 365453406 3346 False 6181.0 6181 100.000 1 3347 1 chr1A.!!$F3 3346
1 TraesCS1A01G203500 chr1A 223327833 223328760 927 False 1301.0 1301 91.835 2402 3344 1 chr1A.!!$F2 942
2 TraesCS1A01G203500 chr1A 223276088 223277015 927 False 1273.0 1273 91.304 2402 3344 1 chr1A.!!$F1 942
3 TraesCS1A01G203500 chr1D 293456001 293457215 1214 False 965.5 1495 94.502 1 2402 2 chr1D.!!$F1 2401
4 TraesCS1A01G203500 chr7A 398953257 398954198 941 False 1351.0 1351 92.495 2400 3345 1 chr7A.!!$F1 945
5 TraesCS1A01G203500 chr7A 370027588 370028532 944 True 1197.0 1197 89.601 2400 3344 1 chr7A.!!$R2 944
6 TraesCS1A01G203500 chr7A 350801680 350802622 942 True 1160.0 1160 88.971 2402 3344 1 chr7A.!!$R1 942
7 TraesCS1A01G203500 chr3A 297561400 297562341 941 False 1349.0 1349 92.487 2402 3345 1 chr3A.!!$F1 943
8 TraesCS1A01G203500 chr6A 274264450 274265385 935 True 1208.0 1208 89.915 2402 3343 1 chr6A.!!$R1 941
9 TraesCS1A01G203500 chr4A 273809506 273810449 943 False 1146.0 1146 88.679 2402 3345 1 chr4A.!!$F1 943
10 TraesCS1A01G203500 chr2A 331495216 331496159 943 True 1129.0 1129 88.353 2402 3345 1 chr2A.!!$R1 943
11 TraesCS1A01G203500 chr1B 394444732 394445568 836 False 1040.0 1040 89.273 1 830 1 chr1B.!!$F2 829

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
990 1000 0.107831 CCTGTCGTTTGTCCCTTGGA 59.892 55.0 0.0 0.0 0.00 3.53 F
1048 1058 0.034198 TGCCAGCTACAACGTGCTTA 59.966 50.0 0.0 0.0 37.44 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2110 2123 0.107703 TCAGATAGGCGCAGTTTGGG 60.108 55.0 10.83 0.0 0.0 4.12 R
2486 2500 0.178846 TCCCCTTGTGATTCCCCTCA 60.179 55.0 0.00 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 3.027412 TGGAAAGCTTTGCCACAAACTA 58.973 40.909 25.53 3.77 0.00 2.24
86 87 2.028337 TAAGCAGTGCGCACGTGA 59.972 55.556 32.94 16.08 46.13 4.35
102 103 1.026182 GTGATGCATGCGTCCTTCCA 61.026 55.000 31.77 14.76 0.00 3.53
111 112 1.003118 TGCGTCCTTCCAAGTTAGCAT 59.997 47.619 0.00 0.00 0.00 3.79
165 166 7.138736 TCACAAATTTCCTAAGAAAAGAAGCG 58.861 34.615 0.00 0.00 44.91 4.68
200 201 2.363306 ACACATTGAAAGGTGGCAGA 57.637 45.000 11.98 0.00 44.34 4.26
203 204 4.406456 ACACATTGAAAGGTGGCAGATAA 58.594 39.130 11.98 0.00 44.34 1.75
215 216 0.817654 GCAGATAAGTTTGCCACCCC 59.182 55.000 0.00 0.00 34.28 4.95
222 223 1.303317 GTTTGCCACCCCAGACGAT 60.303 57.895 0.00 0.00 0.00 3.73
271 272 1.548986 GTGTGTGCAACTGAAGCAAC 58.451 50.000 0.00 0.00 44.64 4.17
274 275 0.740149 TGTGCAACTGAAGCAACCTG 59.260 50.000 0.00 0.00 44.64 4.00
286 287 3.105959 AGCAACCTGGGCTTTGATTAT 57.894 42.857 0.00 0.00 38.81 1.28
300 301 7.606073 GGGCTTTGATTATTAATTGTGGTGTTT 59.394 33.333 0.00 0.00 0.00 2.83
305 306 7.531716 TGATTATTAATTGTGGTGTTTCGGTC 58.468 34.615 0.00 0.00 0.00 4.79
358 359 8.054572 TGAGAAATTTGGGATGATGAATAGACA 58.945 33.333 0.00 0.00 0.00 3.41
363 364 4.450976 TGGGATGATGAATAGACAAACGG 58.549 43.478 0.00 0.00 0.00 4.44
364 365 4.163268 TGGGATGATGAATAGACAAACGGA 59.837 41.667 0.00 0.00 0.00 4.69
368 369 6.538742 GGATGATGAATAGACAAACGGAAAGA 59.461 38.462 0.00 0.00 0.00 2.52
437 438 3.127030 GCAACATACCCTTCACAGCTAAC 59.873 47.826 0.00 0.00 0.00 2.34
465 466 7.819900 GCTACACCATATATTCTAGTTCCCTTG 59.180 40.741 0.00 0.00 0.00 3.61
469 470 7.023120 ACCATATATTCTAGTTCCCTTGCCTA 58.977 38.462 0.00 0.00 0.00 3.93
529 530 3.791245 AGCTAGCTCATACTTTGCTCAC 58.209 45.455 12.68 0.00 38.15 3.51
534 535 5.867903 AGCTCATACTTTGCTCACTCTAT 57.132 39.130 0.00 0.00 30.41 1.98
537 538 5.920273 GCTCATACTTTGCTCACTCTATCTC 59.080 44.000 0.00 0.00 0.00 2.75
549 550 5.944013 TCACTCTATCTCGTTTTCTGTCTG 58.056 41.667 0.00 0.00 0.00 3.51
560 561 1.361204 TTCTGTCTGCTCAATGGGGA 58.639 50.000 0.00 0.00 0.00 4.81
564 565 1.918262 TGTCTGCTCAATGGGGAGAAT 59.082 47.619 5.75 0.00 37.05 2.40
568 569 3.007290 TCTGCTCAATGGGGAGAATATCG 59.993 47.826 0.58 0.00 37.05 2.92
577 578 1.603172 GGGAGAATATCGTGTGCTCCG 60.603 57.143 0.00 0.00 44.71 4.63
590 591 3.221222 CTCCGGGAGCACCTAAGG 58.779 66.667 11.83 1.98 36.97 2.69
602 603 2.683916 CCTAAGGACAGGTGCTCCA 58.316 57.895 7.70 0.00 35.89 3.86
646 647 9.403382 GGATCTAGGTCCAATGCTGATCTACAG 62.403 48.148 17.72 0.00 42.23 2.74
672 673 4.814771 GCGCTGGACCTAAATGTAATTACT 59.185 41.667 16.33 0.00 33.67 2.24
673 674 5.277345 GCGCTGGACCTAAATGTAATTACTG 60.277 44.000 16.33 2.62 33.67 2.74
678 679 7.924541 TGGACCTAAATGTAATTACTGGACTT 58.075 34.615 16.33 5.60 33.67 3.01
684 685 6.759497 AATGTAATTACTGGACTTCTTGGC 57.241 37.500 16.33 0.00 32.46 4.52
732 733 1.142262 TGACCATGGATGCTGGATCTG 59.858 52.381 21.47 0.69 37.22 2.90
736 737 2.306219 CCATGGATGCTGGATCTGAGAT 59.694 50.000 5.56 0.00 35.70 2.75
742 743 2.382882 TGCTGGATCTGAGATCGAACT 58.617 47.619 15.64 0.00 0.00 3.01
772 782 2.625790 ACTCCGGAGCTCAGATATTGTC 59.374 50.000 31.56 0.00 0.00 3.18
780 790 2.549778 GCTCAGATATTGTCCCCTGCTC 60.550 54.545 0.00 0.00 0.00 4.26
785 795 0.911769 TATTGTCCCCTGCTCAGTGG 59.088 55.000 0.00 0.00 0.00 4.00
804 814 1.532604 GGTCCCCTTTTCTTTGCCGG 61.533 60.000 0.00 0.00 0.00 6.13
811 821 0.820871 TTTTCTTTGCCGGCACACTT 59.179 45.000 32.95 0.00 0.00 3.16
830 840 2.368192 CCATAGAGGTGGGGCCCA 60.368 66.667 24.76 24.76 38.26 5.36
831 841 2.455565 CCATAGAGGTGGGGCCCAG 61.456 68.421 29.66 12.62 38.26 4.45
832 842 1.694169 CATAGAGGTGGGGCCCAGT 60.694 63.158 29.66 17.53 38.26 4.00
833 843 1.694169 ATAGAGGTGGGGCCCAGTG 60.694 63.158 29.66 0.00 38.26 3.66
834 844 2.194951 ATAGAGGTGGGGCCCAGTGA 62.195 60.000 29.66 10.47 38.26 3.41
835 845 4.035102 GAGGTGGGGCCCAGTGAC 62.035 72.222 29.66 14.71 38.26 3.67
836 846 4.599500 AGGTGGGGCCCAGTGACT 62.599 66.667 29.66 18.98 38.26 3.41
837 847 4.035102 GGTGGGGCCCAGTGACTC 62.035 72.222 29.66 13.41 32.34 3.36
838 848 4.394712 GTGGGGCCCAGTGACTCG 62.395 72.222 29.66 0.00 32.34 4.18
841 851 4.394712 GGGCCCAGTGACTCGGTG 62.395 72.222 19.95 0.00 0.00 4.94
842 852 3.626924 GGCCCAGTGACTCGGTGT 61.627 66.667 0.00 0.00 0.00 4.16
843 853 2.048127 GCCCAGTGACTCGGTGTC 60.048 66.667 0.00 3.34 45.54 3.67
851 861 3.347411 GACTCGGTGTCAGCCATAC 57.653 57.895 5.39 0.00 44.73 2.39
852 862 0.179108 GACTCGGTGTCAGCCATACC 60.179 60.000 5.39 0.00 44.73 2.73
855 865 3.305314 GGTGTCAGCCATACCGGA 58.695 61.111 9.46 0.00 36.56 5.14
856 866 1.600107 GGTGTCAGCCATACCGGAA 59.400 57.895 9.46 0.00 36.56 4.30
857 867 0.462047 GGTGTCAGCCATACCGGAAG 60.462 60.000 9.46 0.00 36.56 3.46
869 879 2.125912 CGGAAGGAGGCGTGACAG 60.126 66.667 0.00 0.00 0.00 3.51
870 880 2.266055 GGAAGGAGGCGTGACAGG 59.734 66.667 0.00 0.00 0.00 4.00
871 881 2.435059 GAAGGAGGCGTGACAGGC 60.435 66.667 11.67 11.67 0.00 4.85
872 882 3.240134 GAAGGAGGCGTGACAGGCA 62.240 63.158 20.74 0.00 39.37 4.75
873 883 2.731691 GAAGGAGGCGTGACAGGCAA 62.732 60.000 20.74 0.00 39.37 4.52
874 884 2.281484 GGAGGCGTGACAGGCAAA 60.281 61.111 20.74 0.00 39.37 3.68
875 885 2.617274 GGAGGCGTGACAGGCAAAC 61.617 63.158 20.74 11.07 39.37 2.93
876 886 1.891919 GAGGCGTGACAGGCAAACA 60.892 57.895 20.74 0.00 39.37 2.83
877 887 2.117941 GAGGCGTGACAGGCAAACAC 62.118 60.000 20.74 4.08 39.37 3.32
878 888 2.477176 GGCGTGACAGGCAAACACA 61.477 57.895 20.74 0.00 34.69 3.72
879 889 1.654220 GCGTGACAGGCAAACACAT 59.346 52.632 15.01 0.00 34.69 3.21
880 890 0.661187 GCGTGACAGGCAAACACATG 60.661 55.000 15.01 0.00 34.69 3.21
881 891 0.943673 CGTGACAGGCAAACACATGA 59.056 50.000 0.00 0.00 34.69 3.07
882 892 1.334059 CGTGACAGGCAAACACATGAC 60.334 52.381 0.00 0.00 34.69 3.06
883 893 1.001378 GTGACAGGCAAACACATGACC 60.001 52.381 0.00 0.00 35.06 4.02
884 894 1.133823 TGACAGGCAAACACATGACCT 60.134 47.619 0.00 0.00 0.00 3.85
885 895 1.267806 GACAGGCAAACACATGACCTG 59.732 52.381 0.00 8.67 43.84 4.00
886 896 1.133823 ACAGGCAAACACATGACCTGA 60.134 47.619 13.94 0.00 42.34 3.86
887 897 1.538512 CAGGCAAACACATGACCTGAG 59.461 52.381 0.00 0.00 42.34 3.35
888 898 1.421268 AGGCAAACACATGACCTGAGA 59.579 47.619 0.00 0.00 0.00 3.27
889 899 2.158623 AGGCAAACACATGACCTGAGAA 60.159 45.455 0.00 0.00 0.00 2.87
890 900 2.622942 GGCAAACACATGACCTGAGAAA 59.377 45.455 0.00 0.00 0.00 2.52
891 901 3.304928 GGCAAACACATGACCTGAGAAAG 60.305 47.826 0.00 0.00 0.00 2.62
892 902 3.565482 GCAAACACATGACCTGAGAAAGA 59.435 43.478 0.00 0.00 0.00 2.52
893 903 4.036734 GCAAACACATGACCTGAGAAAGAA 59.963 41.667 0.00 0.00 0.00 2.52
894 904 5.755813 CAAACACATGACCTGAGAAAGAAG 58.244 41.667 0.00 0.00 0.00 2.85
895 905 4.963318 ACACATGACCTGAGAAAGAAGA 57.037 40.909 0.00 0.00 0.00 2.87
896 906 5.495926 ACACATGACCTGAGAAAGAAGAT 57.504 39.130 0.00 0.00 0.00 2.40
897 907 5.243981 ACACATGACCTGAGAAAGAAGATG 58.756 41.667 0.00 0.00 0.00 2.90
898 908 4.094590 CACATGACCTGAGAAAGAAGATGC 59.905 45.833 0.00 0.00 0.00 3.91
899 909 4.259356 CATGACCTGAGAAAGAAGATGCA 58.741 43.478 0.00 0.00 0.00 3.96
900 910 4.564782 TGACCTGAGAAAGAAGATGCAT 57.435 40.909 0.00 0.00 0.00 3.96
901 911 4.914983 TGACCTGAGAAAGAAGATGCATT 58.085 39.130 0.00 0.00 0.00 3.56
902 912 4.940046 TGACCTGAGAAAGAAGATGCATTC 59.060 41.667 0.00 0.00 0.00 2.67
903 913 5.176741 ACCTGAGAAAGAAGATGCATTCT 57.823 39.130 0.00 0.00 41.31 2.40
904 914 6.070596 TGACCTGAGAAAGAAGATGCATTCTA 60.071 38.462 0.00 0.00 38.59 2.10
905 915 6.347696 ACCTGAGAAAGAAGATGCATTCTAG 58.652 40.000 0.00 0.00 38.59 2.43
906 916 5.236911 CCTGAGAAAGAAGATGCATTCTAGC 59.763 44.000 0.00 0.00 38.59 3.42
907 917 5.121811 TGAGAAAGAAGATGCATTCTAGCC 58.878 41.667 0.00 0.00 38.59 3.93
908 918 4.125703 AGAAAGAAGATGCATTCTAGCCG 58.874 43.478 0.00 0.00 38.59 5.52
909 919 3.550437 AAGAAGATGCATTCTAGCCGT 57.450 42.857 0.00 0.00 38.59 5.68
910 920 3.550437 AGAAGATGCATTCTAGCCGTT 57.450 42.857 0.00 0.00 37.76 4.44
911 921 4.672587 AGAAGATGCATTCTAGCCGTTA 57.327 40.909 0.00 0.00 37.76 3.18
912 922 4.626042 AGAAGATGCATTCTAGCCGTTAG 58.374 43.478 0.00 0.00 37.76 2.34
913 923 4.342378 AGAAGATGCATTCTAGCCGTTAGA 59.658 41.667 0.00 0.00 37.76 2.10
914 924 4.881019 AGATGCATTCTAGCCGTTAGAT 57.119 40.909 0.00 0.00 38.19 1.98
915 925 5.220710 AGATGCATTCTAGCCGTTAGATT 57.779 39.130 0.00 0.00 38.19 2.40
916 926 5.615289 AGATGCATTCTAGCCGTTAGATTT 58.385 37.500 0.00 0.00 38.19 2.17
917 927 5.698545 AGATGCATTCTAGCCGTTAGATTTC 59.301 40.000 0.00 0.00 38.19 2.17
918 928 4.765273 TGCATTCTAGCCGTTAGATTTCA 58.235 39.130 0.00 0.00 38.19 2.69
919 929 5.182487 TGCATTCTAGCCGTTAGATTTCAA 58.818 37.500 0.00 0.00 38.19 2.69
920 930 5.822519 TGCATTCTAGCCGTTAGATTTCAAT 59.177 36.000 0.00 0.00 38.19 2.57
921 931 6.017934 TGCATTCTAGCCGTTAGATTTCAATC 60.018 38.462 0.00 0.00 38.19 2.67
922 932 6.566753 GCATTCTAGCCGTTAGATTTCAATCC 60.567 42.308 0.00 0.00 38.19 3.01
923 933 5.607939 TCTAGCCGTTAGATTTCAATCCA 57.392 39.130 0.00 0.00 36.04 3.41
924 934 5.601662 TCTAGCCGTTAGATTTCAATCCAG 58.398 41.667 0.00 0.00 36.04 3.86
925 935 2.945668 AGCCGTTAGATTTCAATCCAGC 59.054 45.455 0.00 0.00 36.04 4.85
926 936 2.682856 GCCGTTAGATTTCAATCCAGCA 59.317 45.455 0.00 0.00 36.04 4.41
927 937 3.242870 GCCGTTAGATTTCAATCCAGCAG 60.243 47.826 0.00 0.00 36.04 4.24
928 938 3.941483 CCGTTAGATTTCAATCCAGCAGT 59.059 43.478 0.00 0.00 36.04 4.40
929 939 4.034510 CCGTTAGATTTCAATCCAGCAGTC 59.965 45.833 0.00 0.00 36.04 3.51
930 940 4.259970 CGTTAGATTTCAATCCAGCAGTCG 60.260 45.833 0.00 0.00 36.04 4.18
931 941 2.636830 AGATTTCAATCCAGCAGTCGG 58.363 47.619 0.00 0.00 36.04 4.79
932 942 2.237143 AGATTTCAATCCAGCAGTCGGA 59.763 45.455 0.00 0.00 36.04 4.55
933 943 2.559698 TTTCAATCCAGCAGTCGGAA 57.440 45.000 0.00 0.00 35.77 4.30
934 944 2.559698 TTCAATCCAGCAGTCGGAAA 57.440 45.000 0.00 0.00 35.77 3.13
935 945 2.559698 TCAATCCAGCAGTCGGAAAA 57.440 45.000 0.00 0.00 35.77 2.29
936 946 2.426522 TCAATCCAGCAGTCGGAAAAG 58.573 47.619 0.00 0.00 35.77 2.27
937 947 2.154462 CAATCCAGCAGTCGGAAAAGT 58.846 47.619 0.00 0.00 35.77 2.66
938 948 2.100605 ATCCAGCAGTCGGAAAAGTC 57.899 50.000 0.00 0.00 35.77 3.01
939 949 0.319555 TCCAGCAGTCGGAAAAGTCG 60.320 55.000 0.00 0.00 0.00 4.18
940 950 0.319555 CCAGCAGTCGGAAAAGTCGA 60.320 55.000 0.00 0.00 0.00 4.20
951 961 6.701432 TCGGAAAAGTCGACTCTAATTTTC 57.299 37.500 20.33 21.86 38.52 2.29
952 962 6.453092 TCGGAAAAGTCGACTCTAATTTTCT 58.547 36.000 26.65 7.10 38.99 2.52
953 963 6.927381 TCGGAAAAGTCGACTCTAATTTTCTT 59.073 34.615 26.65 11.87 38.99 2.52
954 964 7.440255 TCGGAAAAGTCGACTCTAATTTTCTTT 59.560 33.333 26.65 17.87 38.99 2.52
955 965 8.706035 CGGAAAAGTCGACTCTAATTTTCTTTA 58.294 33.333 26.65 0.00 38.99 1.85
960 970 9.827411 AAGTCGACTCTAATTTTCTTTATTTGC 57.173 29.630 20.33 0.00 0.00 3.68
961 971 8.451748 AGTCGACTCTAATTTTCTTTATTTGCC 58.548 33.333 13.58 0.00 0.00 4.52
962 972 8.234546 GTCGACTCTAATTTTCTTTATTTGCCA 58.765 33.333 8.70 0.00 0.00 4.92
963 973 8.788806 TCGACTCTAATTTTCTTTATTTGCCAA 58.211 29.630 0.00 0.00 0.00 4.52
964 974 9.405587 CGACTCTAATTTTCTTTATTTGCCAAA 57.594 29.630 0.00 0.00 0.00 3.28
984 994 4.499037 AAAAATAGCCTGTCGTTTGTCC 57.501 40.909 0.00 0.00 0.00 4.02
985 995 2.109425 AATAGCCTGTCGTTTGTCCC 57.891 50.000 0.00 0.00 0.00 4.46
986 996 1.276622 ATAGCCTGTCGTTTGTCCCT 58.723 50.000 0.00 0.00 0.00 4.20
987 997 1.053424 TAGCCTGTCGTTTGTCCCTT 58.947 50.000 0.00 0.00 0.00 3.95
988 998 0.535102 AGCCTGTCGTTTGTCCCTTG 60.535 55.000 0.00 0.00 0.00 3.61
989 999 1.515521 GCCTGTCGTTTGTCCCTTGG 61.516 60.000 0.00 0.00 0.00 3.61
990 1000 0.107831 CCTGTCGTTTGTCCCTTGGA 59.892 55.000 0.00 0.00 0.00 3.53
991 1001 1.271379 CCTGTCGTTTGTCCCTTGGAT 60.271 52.381 0.00 0.00 32.73 3.41
992 1002 2.504367 CTGTCGTTTGTCCCTTGGATT 58.496 47.619 0.00 0.00 32.73 3.01
993 1003 2.884639 CTGTCGTTTGTCCCTTGGATTT 59.115 45.455 0.00 0.00 32.73 2.17
994 1004 4.069304 CTGTCGTTTGTCCCTTGGATTTA 58.931 43.478 0.00 0.00 32.73 1.40
995 1005 4.462133 TGTCGTTTGTCCCTTGGATTTAA 58.538 39.130 0.00 0.00 32.73 1.52
996 1006 5.074115 TGTCGTTTGTCCCTTGGATTTAAT 58.926 37.500 0.00 0.00 32.73 1.40
997 1007 5.182380 TGTCGTTTGTCCCTTGGATTTAATC 59.818 40.000 0.00 0.00 32.73 1.75
998 1008 5.414765 GTCGTTTGTCCCTTGGATTTAATCT 59.585 40.000 4.87 0.00 32.73 2.40
999 1009 5.414454 TCGTTTGTCCCTTGGATTTAATCTG 59.586 40.000 4.87 0.00 32.73 2.90
1000 1010 5.414454 CGTTTGTCCCTTGGATTTAATCTGA 59.586 40.000 4.87 0.00 32.73 3.27
1001 1011 6.095440 CGTTTGTCCCTTGGATTTAATCTGAT 59.905 38.462 4.87 0.00 32.73 2.90
1002 1012 7.282224 CGTTTGTCCCTTGGATTTAATCTGATA 59.718 37.037 4.87 0.00 32.73 2.15
1003 1013 9.136323 GTTTGTCCCTTGGATTTAATCTGATAT 57.864 33.333 4.87 0.00 32.73 1.63
1013 1023 9.056005 TGGATTTAATCTGATATATATTGCGGC 57.944 33.333 4.87 0.00 0.00 6.53
1014 1024 8.223769 GGATTTAATCTGATATATATTGCGGCG 58.776 37.037 0.51 0.51 0.00 6.46
1015 1025 6.525121 TTAATCTGATATATATTGCGGCGC 57.475 37.500 27.44 27.44 0.00 6.53
1016 1026 2.821546 TCTGATATATATTGCGGCGCC 58.178 47.619 30.82 19.07 0.00 6.53
1017 1027 1.522676 CTGATATATATTGCGGCGCCG 59.477 52.381 43.13 43.13 43.09 6.46
1028 1038 3.551915 GGCGCCGCGAAACTAGAC 61.552 66.667 18.91 0.00 0.00 2.59
1029 1039 2.506438 GCGCCGCGAAACTAGACT 60.506 61.111 18.91 0.00 0.00 3.24
1030 1040 2.789203 GCGCCGCGAAACTAGACTG 61.789 63.158 18.91 0.00 0.00 3.51
1031 1041 2.789203 CGCCGCGAAACTAGACTGC 61.789 63.158 8.23 0.00 0.00 4.40
1032 1042 2.453638 GCCGCGAAACTAGACTGCC 61.454 63.158 8.23 0.00 0.00 4.85
1033 1043 1.080093 CCGCGAAACTAGACTGCCA 60.080 57.895 8.23 0.00 0.00 4.92
1034 1044 1.078759 CCGCGAAACTAGACTGCCAG 61.079 60.000 8.23 0.00 0.00 4.85
1035 1045 1.687494 CGCGAAACTAGACTGCCAGC 61.687 60.000 0.00 0.00 0.00 4.85
1036 1046 0.390472 GCGAAACTAGACTGCCAGCT 60.390 55.000 0.00 0.00 0.00 4.24
1037 1047 1.135083 GCGAAACTAGACTGCCAGCTA 60.135 52.381 0.00 0.00 0.00 3.32
1038 1048 2.531206 CGAAACTAGACTGCCAGCTAC 58.469 52.381 0.00 0.00 0.00 3.58
1039 1049 2.094700 CGAAACTAGACTGCCAGCTACA 60.095 50.000 0.00 0.00 0.00 2.74
1040 1050 3.614150 CGAAACTAGACTGCCAGCTACAA 60.614 47.826 0.00 0.00 0.00 2.41
1041 1051 3.320673 AACTAGACTGCCAGCTACAAC 57.679 47.619 0.00 0.00 0.00 3.32
1042 1052 1.202582 ACTAGACTGCCAGCTACAACG 59.797 52.381 0.00 0.00 0.00 4.10
1043 1053 1.202582 CTAGACTGCCAGCTACAACGT 59.797 52.381 0.00 0.00 0.00 3.99
1044 1054 0.319900 AGACTGCCAGCTACAACGTG 60.320 55.000 0.00 0.00 0.00 4.49
1045 1055 1.901650 GACTGCCAGCTACAACGTGC 61.902 60.000 0.00 0.00 0.00 5.34
1046 1056 1.669115 CTGCCAGCTACAACGTGCT 60.669 57.895 0.00 0.00 40.54 4.40
1047 1057 1.227823 TGCCAGCTACAACGTGCTT 60.228 52.632 0.00 0.00 37.44 3.91
1048 1058 0.034198 TGCCAGCTACAACGTGCTTA 59.966 50.000 0.00 0.00 37.44 3.09
1049 1059 0.442699 GCCAGCTACAACGTGCTTAC 59.557 55.000 0.00 0.00 37.44 2.34
1050 1060 0.713883 CCAGCTACAACGTGCTTACG 59.286 55.000 0.00 0.00 37.44 3.18
1052 1062 1.124297 CAGCTACAACGTGCTTACGTG 59.876 52.381 6.22 4.02 46.41 4.49
1053 1063 0.179258 GCTACAACGTGCTTACGTGC 60.179 55.000 6.22 2.11 46.41 5.34
1054 1064 0.090676 CTACAACGTGCTTACGTGCG 59.909 55.000 6.22 4.01 46.41 5.34
1055 1065 1.878524 TACAACGTGCTTACGTGCGC 61.879 55.000 0.00 0.00 46.41 6.09
1056 1066 3.708734 AACGTGCTTACGTGCGCC 61.709 61.111 4.18 0.00 46.41 6.53
1131 1141 3.519930 GGACCTCCTCCTCGTCGC 61.520 72.222 0.00 0.00 35.89 5.19
1132 1142 3.519930 GACCTCCTCCTCGTCGCC 61.520 72.222 0.00 0.00 0.00 5.54
1133 1143 4.361971 ACCTCCTCCTCGTCGCCA 62.362 66.667 0.00 0.00 0.00 5.69
1134 1144 2.835431 CCTCCTCCTCGTCGCCAT 60.835 66.667 0.00 0.00 0.00 4.40
1135 1145 2.415010 CTCCTCCTCGTCGCCATG 59.585 66.667 0.00 0.00 0.00 3.66
1136 1146 3.144120 CTCCTCCTCGTCGCCATGG 62.144 68.421 7.63 7.63 0.00 3.66
1137 1147 4.899239 CCTCCTCGTCGCCATGGC 62.899 72.222 27.67 27.67 37.85 4.40
1138 1148 4.899239 CTCCTCGTCGCCATGGCC 62.899 72.222 30.79 16.77 37.98 5.36
1143 1153 4.969196 CGTCGCCATGGCCGCTAT 62.969 66.667 30.79 0.00 37.98 2.97
1144 1154 3.349006 GTCGCCATGGCCGCTATG 61.349 66.667 30.79 15.66 37.98 2.23
1145 1155 4.624364 TCGCCATGGCCGCTATGG 62.624 66.667 30.79 27.08 46.28 2.74
1146 1156 4.624364 CGCCATGGCCGCTATGGA 62.624 66.667 33.41 0.00 46.42 3.41
1147 1157 2.203337 GCCATGGCCGCTATGGAA 60.203 61.111 33.41 0.00 46.42 3.53
1148 1158 2.263741 GCCATGGCCGCTATGGAAG 61.264 63.158 33.41 12.44 46.42 3.46
1149 1159 1.149174 CCATGGCCGCTATGGAAGT 59.851 57.895 27.32 0.00 46.42 3.01
1150 1160 0.886490 CCATGGCCGCTATGGAAGTC 60.886 60.000 27.32 0.00 46.42 3.01
1151 1161 0.886490 CATGGCCGCTATGGAAGTCC 60.886 60.000 8.80 0.00 42.00 3.85
1152 1162 2.056906 ATGGCCGCTATGGAAGTCCC 62.057 60.000 0.00 0.00 42.00 4.46
1153 1163 2.111251 GCCGCTATGGAAGTCCCC 59.889 66.667 0.00 0.00 42.00 4.81
1154 1164 2.421739 CCGCTATGGAAGTCCCCG 59.578 66.667 0.00 0.00 42.00 5.73
1155 1165 2.131709 CCGCTATGGAAGTCCCCGA 61.132 63.158 0.00 0.00 42.00 5.14
1156 1166 1.067582 CGCTATGGAAGTCCCCGAC 59.932 63.158 0.00 0.00 34.29 4.79
1157 1167 1.067582 GCTATGGAAGTCCCCGACG 59.932 63.158 0.00 0.00 37.67 5.12
1158 1168 1.673808 GCTATGGAAGTCCCCGACGT 61.674 60.000 0.00 0.00 37.67 4.34
1159 1169 0.384669 CTATGGAAGTCCCCGACGTC 59.615 60.000 5.18 5.18 39.59 4.34
1162 1172 2.883621 GAAGTCCCCGACGTCCTC 59.116 66.667 10.58 0.00 35.60 3.71
1163 1173 2.679287 AAGTCCCCGACGTCCTCC 60.679 66.667 10.58 0.00 37.67 4.30
1218 1228 4.695231 CGCCACGTTCCGTCGTCT 62.695 66.667 0.00 0.00 42.27 4.18
1219 1229 2.804090 GCCACGTTCCGTCGTCTC 60.804 66.667 0.00 0.00 42.27 3.36
1220 1230 2.126580 CCACGTTCCGTCGTCTCC 60.127 66.667 0.00 0.00 42.27 3.71
1221 1231 2.501222 CACGTTCCGTCGTCTCCG 60.501 66.667 0.00 0.00 42.27 4.63
1222 1232 2.974698 ACGTTCCGTCGTCTCCGT 60.975 61.111 0.00 0.00 40.04 4.69
1223 1233 2.202272 CGTTCCGTCGTCTCCGTC 60.202 66.667 0.00 0.00 35.01 4.79
1224 1234 2.675056 CGTTCCGTCGTCTCCGTCT 61.675 63.158 0.00 0.00 35.01 4.18
1225 1235 1.134281 GTTCCGTCGTCTCCGTCTC 59.866 63.158 0.00 0.00 35.01 3.36
1226 1236 2.037136 TTCCGTCGTCTCCGTCTCC 61.037 63.158 0.00 0.00 35.01 3.71
1227 1237 3.507009 CCGTCGTCTCCGTCTCCC 61.507 72.222 0.00 0.00 35.01 4.30
1228 1238 3.507009 CGTCGTCTCCGTCTCCCC 61.507 72.222 0.00 0.00 35.01 4.81
1229 1239 2.045143 GTCGTCTCCGTCTCCCCT 60.045 66.667 0.00 0.00 35.01 4.79
1230 1240 2.114051 GTCGTCTCCGTCTCCCCTC 61.114 68.421 0.00 0.00 35.01 4.30
1231 1241 2.829458 CGTCTCCGTCTCCCCTCC 60.829 72.222 0.00 0.00 0.00 4.30
1232 1242 2.359404 GTCTCCGTCTCCCCTCCA 59.641 66.667 0.00 0.00 0.00 3.86
1233 1243 2.053277 GTCTCCGTCTCCCCTCCAC 61.053 68.421 0.00 0.00 0.00 4.02
1234 1244 3.141488 CTCCGTCTCCCCTCCACG 61.141 72.222 0.00 0.00 0.00 4.94
1245 1255 4.680237 CTCCACGGCGCTGAACCA 62.680 66.667 25.98 2.34 0.00 3.67
1246 1256 4.680237 TCCACGGCGCTGAACCAG 62.680 66.667 25.98 6.31 34.12 4.00
1255 1265 2.743928 CTGAACCAGCCTCCGTGC 60.744 66.667 0.00 0.00 0.00 5.34
1256 1266 4.329545 TGAACCAGCCTCCGTGCC 62.330 66.667 0.00 0.00 0.00 5.01
1257 1267 4.021925 GAACCAGCCTCCGTGCCT 62.022 66.667 0.00 0.00 0.00 4.75
1258 1268 4.335647 AACCAGCCTCCGTGCCTG 62.336 66.667 0.00 0.00 0.00 4.85
1261 1271 3.774528 CAGCCTCCGTGCCTGCTA 61.775 66.667 0.00 0.00 31.69 3.49
1262 1272 2.765807 AGCCTCCGTGCCTGCTAT 60.766 61.111 0.00 0.00 30.97 2.97
1263 1273 1.457643 AGCCTCCGTGCCTGCTATA 60.458 57.895 0.00 0.00 30.97 1.31
1264 1274 1.301009 GCCTCCGTGCCTGCTATAC 60.301 63.158 0.00 0.00 0.00 1.47
1265 1275 1.007271 CCTCCGTGCCTGCTATACG 60.007 63.158 0.00 0.00 37.55 3.06
1266 1276 1.661821 CTCCGTGCCTGCTATACGC 60.662 63.158 0.00 0.00 36.56 4.42
1267 1277 3.030308 CCGTGCCTGCTATACGCG 61.030 66.667 3.53 3.53 43.27 6.01
1268 1278 2.278596 CGTGCCTGCTATACGCGT 60.279 61.111 19.17 19.17 43.27 6.01
1269 1279 2.576893 CGTGCCTGCTATACGCGTG 61.577 63.158 24.59 6.31 43.27 5.34
1270 1280 2.584970 TGCCTGCTATACGCGTGC 60.585 61.111 24.59 17.94 43.27 5.34
1271 1281 3.692367 GCCTGCTATACGCGTGCG 61.692 66.667 24.59 13.39 43.27 5.34
1272 1282 2.025584 CCTGCTATACGCGTGCGA 59.974 61.111 24.59 1.10 43.27 5.10
1273 1283 1.371758 CCTGCTATACGCGTGCGAT 60.372 57.895 24.59 10.44 43.27 4.58
1274 1284 1.608966 CCTGCTATACGCGTGCGATG 61.609 60.000 24.59 10.73 43.27 3.84
1275 1285 2.203140 CTGCTATACGCGTGCGATGC 62.203 60.000 24.59 18.15 43.27 3.91
1276 1286 3.000080 GCTATACGCGTGCGATGCC 62.000 63.158 24.59 0.00 42.83 4.40
1277 1287 1.371758 CTATACGCGTGCGATGCCT 60.372 57.895 24.59 0.00 42.83 4.75
1278 1288 0.109919 CTATACGCGTGCGATGCCTA 60.110 55.000 24.59 0.00 42.83 3.93
1279 1289 0.386352 TATACGCGTGCGATGCCTAC 60.386 55.000 24.59 0.00 42.83 3.18
1280 1290 3.943858 TATACGCGTGCGATGCCTACG 62.944 57.143 24.59 0.00 42.83 3.51
1282 1292 4.865761 GCGTGCGATGCCTACGGA 62.866 66.667 0.00 0.00 38.20 4.69
1283 1293 2.655364 CGTGCGATGCCTACGGAG 60.655 66.667 0.00 0.00 34.43 4.63
1284 1294 2.962253 GTGCGATGCCTACGGAGC 60.962 66.667 0.00 0.00 0.00 4.70
1285 1295 3.457263 TGCGATGCCTACGGAGCA 61.457 61.111 0.00 0.00 45.94 4.26
1286 1296 2.659897 GCGATGCCTACGGAGCAG 60.660 66.667 0.00 0.00 44.90 4.24
1287 1297 3.120105 CGATGCCTACGGAGCAGA 58.880 61.111 0.00 0.00 44.90 4.26
1288 1298 1.299468 CGATGCCTACGGAGCAGAC 60.299 63.158 0.00 0.00 44.90 3.51
1289 1299 1.299468 GATGCCTACGGAGCAGACG 60.299 63.158 0.00 0.00 44.90 4.18
1290 1300 1.725557 GATGCCTACGGAGCAGACGA 61.726 60.000 0.00 0.00 44.90 4.20
1291 1301 2.005960 ATGCCTACGGAGCAGACGAC 62.006 60.000 0.00 0.00 44.90 4.34
1292 1302 2.403987 CCTACGGAGCAGACGACG 59.596 66.667 0.00 0.00 34.93 5.12
1293 1303 2.277373 CTACGGAGCAGACGACGC 60.277 66.667 0.00 0.00 34.93 5.19
1294 1304 3.736482 CTACGGAGCAGACGACGCC 62.736 68.421 0.00 0.00 34.93 5.68
1309 1319 4.874977 GCCACGGCGCTCTACTCC 62.875 72.222 6.90 0.00 0.00 3.85
1310 1320 4.208686 CCACGGCGCTCTACTCCC 62.209 72.222 6.90 0.00 0.00 4.30
1311 1321 4.208686 CACGGCGCTCTACTCCCC 62.209 72.222 6.90 0.00 0.00 4.81
1314 1324 3.228017 GGCGCTCTACTCCCCCTC 61.228 72.222 7.64 0.00 0.00 4.30
1315 1325 2.123640 GCGCTCTACTCCCCCTCT 60.124 66.667 0.00 0.00 0.00 3.69
1316 1326 2.494530 GCGCTCTACTCCCCCTCTG 61.495 68.421 0.00 0.00 0.00 3.35
1317 1327 2.494530 CGCTCTACTCCCCCTCTGC 61.495 68.421 0.00 0.00 0.00 4.26
1318 1328 2.137528 GCTCTACTCCCCCTCTGCC 61.138 68.421 0.00 0.00 0.00 4.85
1319 1329 1.311403 CTCTACTCCCCCTCTGCCA 59.689 63.158 0.00 0.00 0.00 4.92
1320 1330 0.325671 CTCTACTCCCCCTCTGCCAA 60.326 60.000 0.00 0.00 0.00 4.52
1321 1331 0.617820 TCTACTCCCCCTCTGCCAAC 60.618 60.000 0.00 0.00 0.00 3.77
1322 1332 1.961180 CTACTCCCCCTCTGCCAACG 61.961 65.000 0.00 0.00 0.00 4.10
1323 1333 4.785453 CTCCCCCTCTGCCAACGC 62.785 72.222 0.00 0.00 0.00 4.84
1328 1338 4.335647 CCTCTGCCAACGCCACCT 62.336 66.667 0.00 0.00 0.00 4.00
1329 1339 2.281761 CTCTGCCAACGCCACCTT 60.282 61.111 0.00 0.00 0.00 3.50
1330 1340 2.281484 TCTGCCAACGCCACCTTC 60.281 61.111 0.00 0.00 0.00 3.46
1331 1341 3.365265 CTGCCAACGCCACCTTCC 61.365 66.667 0.00 0.00 0.00 3.46
1340 1350 4.431131 CCACCTTCCGCCTGCCAT 62.431 66.667 0.00 0.00 0.00 4.40
1341 1351 2.825836 CACCTTCCGCCTGCCATC 60.826 66.667 0.00 0.00 0.00 3.51
1342 1352 4.115199 ACCTTCCGCCTGCCATCC 62.115 66.667 0.00 0.00 0.00 3.51
1343 1353 3.801997 CCTTCCGCCTGCCATCCT 61.802 66.667 0.00 0.00 0.00 3.24
1344 1354 2.203126 CTTCCGCCTGCCATCCTC 60.203 66.667 0.00 0.00 0.00 3.71
1345 1355 4.161295 TTCCGCCTGCCATCCTCG 62.161 66.667 0.00 0.00 0.00 4.63
1349 1359 4.925861 GCCTGCCATCCTCGCTCC 62.926 72.222 0.00 0.00 0.00 4.70
1350 1360 4.598894 CCTGCCATCCTCGCTCCG 62.599 72.222 0.00 0.00 0.00 4.63
1385 1395 4.680237 CGCACGGGTGGCTCTTCA 62.680 66.667 0.43 0.00 0.00 3.02
1386 1396 3.050275 GCACGGGTGGCTCTTCAC 61.050 66.667 0.43 0.00 36.95 3.18
1387 1397 2.743718 CACGGGTGGCTCTTCACT 59.256 61.111 0.00 0.00 37.75 3.41
1388 1398 1.972198 CACGGGTGGCTCTTCACTA 59.028 57.895 0.00 0.00 37.75 2.74
1389 1399 0.389948 CACGGGTGGCTCTTCACTAC 60.390 60.000 0.00 0.00 37.75 2.73
1390 1400 1.218316 CGGGTGGCTCTTCACTACC 59.782 63.158 0.00 0.00 37.75 3.18
1391 1401 1.218316 GGGTGGCTCTTCACTACCG 59.782 63.158 0.00 0.00 37.75 4.02
1392 1402 1.255667 GGGTGGCTCTTCACTACCGA 61.256 60.000 0.00 0.00 37.75 4.69
1393 1403 0.108756 GGTGGCTCTTCACTACCGAC 60.109 60.000 0.00 0.00 37.75 4.79
1394 1404 0.456312 GTGGCTCTTCACTACCGACG 60.456 60.000 0.00 0.00 34.98 5.12
1395 1405 0.607217 TGGCTCTTCACTACCGACGA 60.607 55.000 0.00 0.00 0.00 4.20
1396 1406 0.099082 GGCTCTTCACTACCGACGAG 59.901 60.000 0.00 0.00 35.09 4.18
1398 1408 0.099082 CTCTTCACTACCGACGAGGC 59.901 60.000 0.00 0.00 46.52 4.70
1399 1409 1.226323 CTTCACTACCGACGAGGCG 60.226 63.158 0.00 0.00 46.52 5.52
1411 1421 4.484872 GAGGCGGCCAACCCCTAC 62.485 72.222 23.09 0.00 36.91 3.18
1414 1424 4.484872 GCGGCCAACCCCTACCTC 62.485 72.222 2.24 0.00 0.00 3.85
1415 1425 3.793888 CGGCCAACCCCTACCTCC 61.794 72.222 2.24 0.00 0.00 4.30
1416 1426 2.286197 GGCCAACCCCTACCTCCT 60.286 66.667 0.00 0.00 0.00 3.69
1417 1427 2.376165 GGCCAACCCCTACCTCCTC 61.376 68.421 0.00 0.00 0.00 3.71
1418 1428 1.615424 GCCAACCCCTACCTCCTCA 60.615 63.158 0.00 0.00 0.00 3.86
1419 1429 1.205460 GCCAACCCCTACCTCCTCAA 61.205 60.000 0.00 0.00 0.00 3.02
1420 1430 0.618981 CCAACCCCTACCTCCTCAAC 59.381 60.000 0.00 0.00 0.00 3.18
1421 1431 0.618981 CAACCCCTACCTCCTCAACC 59.381 60.000 0.00 0.00 0.00 3.77
1422 1432 0.549413 AACCCCTACCTCCTCAACCC 60.549 60.000 0.00 0.00 0.00 4.11
1423 1433 1.396594 CCCCTACCTCCTCAACCCT 59.603 63.158 0.00 0.00 0.00 4.34
1424 1434 0.691413 CCCCTACCTCCTCAACCCTC 60.691 65.000 0.00 0.00 0.00 4.30
1425 1435 0.340208 CCCTACCTCCTCAACCCTCT 59.660 60.000 0.00 0.00 0.00 3.69
1426 1436 1.689892 CCCTACCTCCTCAACCCTCTC 60.690 61.905 0.00 0.00 0.00 3.20
1427 1437 1.007238 CCTACCTCCTCAACCCTCTCA 59.993 57.143 0.00 0.00 0.00 3.27
1428 1438 2.104170 CTACCTCCTCAACCCTCTCAC 58.896 57.143 0.00 0.00 0.00 3.51
1429 1439 0.545548 ACCTCCTCAACCCTCTCACC 60.546 60.000 0.00 0.00 0.00 4.02
1430 1440 1.608717 CCTCCTCAACCCTCTCACCG 61.609 65.000 0.00 0.00 0.00 4.94
1431 1441 1.608717 CTCCTCAACCCTCTCACCGG 61.609 65.000 0.00 0.00 0.00 5.28
1432 1442 2.266055 CTCAACCCTCTCACCGGC 59.734 66.667 0.00 0.00 0.00 6.13
1433 1443 3.649277 CTCAACCCTCTCACCGGCG 62.649 68.421 0.00 0.00 0.00 6.46
1462 1472 3.402681 CTCCCGCCCATCACCACT 61.403 66.667 0.00 0.00 0.00 4.00
1463 1473 3.391665 CTCCCGCCCATCACCACTC 62.392 68.421 0.00 0.00 0.00 3.51
1464 1474 3.402681 CCCGCCCATCACCACTCT 61.403 66.667 0.00 0.00 0.00 3.24
1465 1475 2.187946 CCGCCCATCACCACTCTC 59.812 66.667 0.00 0.00 0.00 3.20
1466 1476 2.202797 CGCCCATCACCACTCTCG 60.203 66.667 0.00 0.00 0.00 4.04
1467 1477 2.710902 CGCCCATCACCACTCTCGA 61.711 63.158 0.00 0.00 0.00 4.04
1468 1478 1.142748 GCCCATCACCACTCTCGAG 59.857 63.158 5.93 5.93 0.00 4.04
1469 1479 1.819229 CCCATCACCACTCTCGAGG 59.181 63.158 13.56 5.96 0.00 4.63
1470 1480 1.680522 CCCATCACCACTCTCGAGGG 61.681 65.000 11.78 11.78 0.00 4.30
1471 1481 1.142748 CATCACCACTCTCGAGGGC 59.857 63.158 13.59 0.00 0.00 5.19
1472 1482 2.418910 ATCACCACTCTCGAGGGCG 61.419 63.158 13.59 1.75 39.35 6.13
1473 1483 3.374402 CACCACTCTCGAGGGCGT 61.374 66.667 13.59 5.95 38.98 5.68
1474 1484 3.374402 ACCACTCTCGAGGGCGTG 61.374 66.667 13.59 16.28 38.98 5.34
1475 1485 3.062466 CCACTCTCGAGGGCGTGA 61.062 66.667 22.98 1.63 37.65 4.35
1476 1486 2.636412 CCACTCTCGAGGGCGTGAA 61.636 63.158 22.98 0.73 39.23 3.18
1477 1487 1.153939 CACTCTCGAGGGCGTGAAG 60.154 63.158 13.59 2.56 39.23 3.02
1478 1488 1.303398 ACTCTCGAGGGCGTGAAGA 60.303 57.895 13.59 0.00 39.23 2.87
1479 1489 0.681564 ACTCTCGAGGGCGTGAAGAT 60.682 55.000 13.59 0.00 39.23 2.40
1488 1498 0.955428 GGCGTGAAGATCCACAGCAA 60.955 55.000 15.09 0.00 37.87 3.91
1561 1571 0.536460 TCCCGAAAGTGAAACAGGCC 60.536 55.000 0.00 0.00 41.43 5.19
1562 1572 0.821711 CCCGAAAGTGAAACAGGCCA 60.822 55.000 5.01 0.00 41.43 5.36
1563 1573 1.028905 CCGAAAGTGAAACAGGCCAA 58.971 50.000 5.01 0.00 41.43 4.52
1564 1574 1.613437 CCGAAAGTGAAACAGGCCAAT 59.387 47.619 5.01 0.00 41.43 3.16
1565 1575 2.607771 CCGAAAGTGAAACAGGCCAATG 60.608 50.000 5.01 0.00 41.43 2.82
1916 1929 2.558554 CTACCTCCTGTTCACGCCGG 62.559 65.000 0.00 0.00 0.00 6.13
1939 1952 2.436646 GCCATCCTGGTGGTGACG 60.437 66.667 14.18 0.00 40.46 4.35
2033 2046 4.436998 GCGGTCGGGACTGGACAG 62.437 72.222 9.53 0.00 38.13 3.51
2047 2060 0.251341 GGACAGGCTTGGGTGACAAT 60.251 55.000 0.00 0.00 38.65 2.71
2110 2123 0.179045 AGGACTATCCCATGTTGCGC 60.179 55.000 0.00 0.00 37.19 6.09
2146 2159 0.171231 TGACGGACGATCTTCAGCAG 59.829 55.000 1.23 0.00 0.00 4.24
2225 2238 1.273327 TGCAGAAGCTTGACGATCTCA 59.727 47.619 2.10 0.00 42.74 3.27
2248 2261 0.987294 CTCTCCTTCCTTGGCTGGAA 59.013 55.000 10.99 10.99 43.16 3.53
2260 2273 1.454847 GCTGGAAACACCACCACCA 60.455 57.895 0.00 0.00 44.64 4.17
2308 2321 5.280654 AGACTTGGCACATGAACATTTTT 57.719 34.783 0.00 0.00 39.30 1.94
2358 2371 2.552373 CCTTGCTCGGTTAAACCCTTCT 60.552 50.000 0.00 0.00 33.75 2.85
2363 2376 1.556451 TCGGTTAAACCCTTCTAGGCC 59.444 52.381 0.00 0.00 33.75 5.19
2366 2379 0.108041 TTAAACCCTTCTAGGCCGCG 60.108 55.000 0.00 0.00 32.73 6.46
2367 2380 1.963464 TAAACCCTTCTAGGCCGCGG 61.963 60.000 24.05 24.05 32.73 6.46
2371 2384 2.264794 CTTCTAGGCCGCGGTTGT 59.735 61.111 28.70 14.12 0.00 3.32
2372 2385 2.047655 TTCTAGGCCGCGGTTGTG 60.048 61.111 28.70 14.98 0.00 3.33
2383 2396 1.010125 CGGTTGTGGTTTCAGTGCG 60.010 57.895 0.00 0.00 0.00 5.34
2384 2397 1.299089 GGTTGTGGTTTCAGTGCGC 60.299 57.895 0.00 0.00 0.00 6.09
2385 2398 1.724582 GGTTGTGGTTTCAGTGCGCT 61.725 55.000 9.73 0.00 0.00 5.92
2386 2399 0.592247 GTTGTGGTTTCAGTGCGCTG 60.592 55.000 21.43 21.43 43.87 5.18
2413 2426 3.208570 TGGGGTCTTGATGTAGGGTAA 57.791 47.619 0.00 0.00 0.00 2.85
2486 2500 1.985895 AGAAACACGAGAGGGGGAAAT 59.014 47.619 0.00 0.00 40.46 2.17
2492 2506 1.700042 CGAGAGGGGGAAATGAGGGG 61.700 65.000 0.00 0.00 0.00 4.79
2601 2627 1.100510 CGATCCACGGTCAACTAGGA 58.899 55.000 0.00 0.00 38.46 2.94
2761 2798 9.709495 AATGCTCTATCTCTAAAATGAGCTAAG 57.291 33.333 12.84 0.00 44.80 2.18
2785 2822 5.253330 CCAATGCTAACCCTAGAAAGTTGA 58.747 41.667 0.00 0.00 0.00 3.18
2792 2829 1.825474 CCCTAGAAAGTTGAGCGAGGA 59.175 52.381 0.00 0.00 0.00 3.71
2801 2838 3.482436 AGTTGAGCGAGGAGGAGTATAG 58.518 50.000 0.00 0.00 0.00 1.31
2874 2911 4.095400 AGGGGAGGCCGGATGTCT 62.095 66.667 5.05 0.00 0.00 3.41
3093 3132 2.670934 CTTCTGGCGGCTGTGCTT 60.671 61.111 11.43 0.00 34.52 3.91
3103 3142 0.035458 GGCTGTGCTTCTGTAGTGGT 59.965 55.000 0.00 0.00 0.00 4.16
3214 3253 1.862827 CATCTTCATGCGCATCTTCGA 59.137 47.619 22.51 12.29 0.00 3.71
3285 3324 3.404224 AGCCATGTCTCATGCATAGAG 57.596 47.619 15.80 15.80 34.42 2.43
3286 3325 2.038689 AGCCATGTCTCATGCATAGAGG 59.961 50.000 19.47 12.46 33.92 3.69
3309 3348 1.202817 GGAAGTTCGGAGAGGAGTGAC 59.797 57.143 0.00 0.00 38.43 3.67
3310 3349 0.882474 AAGTTCGGAGAGGAGTGACG 59.118 55.000 0.00 0.00 38.43 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 7.007723 TGTTCTTTTGGGAAGTGGTGTATATT 58.992 34.615 0.00 0.00 0.00 1.28
12 13 3.976015 TCCAAGTGTTCTTTTGGGAAGT 58.024 40.909 3.66 0.00 43.22 3.01
51 52 6.095440 ACTGCTTACAAAACTCAAACAGACAT 59.905 34.615 0.00 0.00 0.00 3.06
86 87 0.322816 ACTTGGAAGGACGCATGCAT 60.323 50.000 19.57 0.36 0.00 3.96
161 162 4.332819 GTGTTATGAATGTAGCCTTCGCTT 59.667 41.667 0.00 0.00 45.55 4.68
165 166 7.320443 TCAATGTGTTATGAATGTAGCCTTC 57.680 36.000 0.00 0.00 0.00 3.46
200 201 1.613255 CGTCTGGGGTGGCAAACTTAT 60.613 52.381 0.00 0.00 0.00 1.73
203 204 1.779061 ATCGTCTGGGGTGGCAAACT 61.779 55.000 0.00 0.00 0.00 2.66
215 216 7.276438 TCAATCTGTGACTTTCAATATCGTCTG 59.724 37.037 0.00 0.00 0.00 3.51
222 223 8.534496 TCTGAGATCAATCTGTGACTTTCAATA 58.466 33.333 0.00 0.00 39.72 1.90
271 272 6.127083 ACCACAATTAATAATCAAAGCCCAGG 60.127 38.462 0.00 0.00 0.00 4.45
274 275 6.639563 ACACCACAATTAATAATCAAAGCCC 58.360 36.000 0.00 0.00 0.00 5.19
286 287 3.464907 TCGACCGAAACACCACAATTAA 58.535 40.909 0.00 0.00 0.00 1.40
358 359 7.897864 TCTCTCTAAGAAATCTCTTTCCGTTT 58.102 34.615 0.00 0.00 42.17 3.60
407 408 6.007076 TGTGAAGGGTATGTTGCTTATGAAA 58.993 36.000 0.00 0.00 0.00 2.69
437 438 6.331061 GGAACTAGAATATATGGTGTAGCCG 58.669 44.000 0.00 0.00 41.21 5.52
445 446 6.380079 AGGCAAGGGAACTAGAATATATGG 57.620 41.667 0.00 0.00 42.68 2.74
446 447 8.140112 AGTAGGCAAGGGAACTAGAATATATG 57.860 38.462 0.00 0.00 42.68 1.78
469 470 3.418047 GTGTTGTGGCCCACTTATAAGT 58.582 45.455 16.23 12.50 40.60 2.24
488 489 3.579709 CTCTACAAGCTGTACAGTGGTG 58.420 50.000 23.44 19.31 0.00 4.17
515 516 5.590663 ACGAGATAGAGTGAGCAAAGTATGA 59.409 40.000 0.00 0.00 0.00 2.15
529 530 4.992688 AGCAGACAGAAAACGAGATAGAG 58.007 43.478 0.00 0.00 0.00 2.43
534 535 3.452755 TTGAGCAGACAGAAAACGAGA 57.547 42.857 0.00 0.00 0.00 4.04
537 538 2.095567 CCCATTGAGCAGACAGAAAACG 60.096 50.000 0.00 0.00 0.00 3.60
549 550 3.070018 CACGATATTCTCCCCATTGAGC 58.930 50.000 0.00 0.00 32.22 4.26
560 561 0.389391 CCCGGAGCACACGATATTCT 59.611 55.000 0.73 0.00 0.00 2.40
564 565 3.521605 CTCCCGGAGCACACGATA 58.478 61.111 0.73 0.00 0.00 2.92
577 578 1.908483 CCTGTCCTTAGGTGCTCCC 59.092 63.158 0.00 0.00 32.99 4.30
586 587 1.888436 CGCTGGAGCACCTGTCCTTA 61.888 60.000 8.75 0.00 42.21 2.69
634 635 0.749049 AGCGCATCTGTAGATCAGCA 59.251 50.000 11.47 0.00 43.32 4.41
646 647 1.668419 ACATTTAGGTCCAGCGCATC 58.332 50.000 11.47 0.00 0.00 3.91
652 653 7.565680 AGTCCAGTAATTACATTTAGGTCCAG 58.434 38.462 17.65 0.00 0.00 3.86
653 654 7.504926 AGTCCAGTAATTACATTTAGGTCCA 57.495 36.000 17.65 0.00 0.00 4.02
661 662 5.354234 CGCCAAGAAGTCCAGTAATTACATT 59.646 40.000 17.65 4.45 0.00 2.71
672 673 1.416401 AGAAAGACGCCAAGAAGTCCA 59.584 47.619 0.00 0.00 38.08 4.02
673 674 1.801178 CAGAAAGACGCCAAGAAGTCC 59.199 52.381 0.00 0.00 38.08 3.85
678 679 1.674359 TTTGCAGAAAGACGCCAAGA 58.326 45.000 0.00 0.00 0.00 3.02
713 714 1.419012 TCAGATCCAGCATCCATGGTC 59.581 52.381 12.58 0.00 39.01 4.02
732 733 0.174389 TGCCTCAGCAGTTCGATCTC 59.826 55.000 0.00 0.00 46.52 2.75
754 755 1.001406 GGGACAATATCTGAGCTCCGG 59.999 57.143 12.15 0.00 0.00 5.14
756 757 2.038295 CAGGGGACAATATCTGAGCTCC 59.962 54.545 12.15 0.00 0.00 4.70
758 759 1.419387 GCAGGGGACAATATCTGAGCT 59.581 52.381 0.00 0.00 0.00 4.09
759 760 1.419387 AGCAGGGGACAATATCTGAGC 59.581 52.381 0.00 0.00 0.00 4.26
760 761 2.702478 TGAGCAGGGGACAATATCTGAG 59.298 50.000 0.00 0.00 0.00 3.35
761 762 2.702478 CTGAGCAGGGGACAATATCTGA 59.298 50.000 0.00 0.00 0.00 3.27
762 763 2.437281 ACTGAGCAGGGGACAATATCTG 59.563 50.000 2.20 0.00 0.00 2.90
811 821 3.096495 GGCCCCACCTCTATGGCA 61.096 66.667 0.00 0.00 45.83 4.92
813 823 2.368192 TGGGCCCCACCTCTATGG 60.368 66.667 22.27 0.00 42.93 2.74
818 828 4.035102 GTCACTGGGCCCCACCTC 62.035 72.222 22.27 3.18 39.10 3.85
834 844 1.898154 GGTATGGCTGACACCGAGT 59.102 57.895 0.00 0.00 0.00 4.18
835 845 4.835927 GGTATGGCTGACACCGAG 57.164 61.111 0.00 0.00 0.00 4.63
838 848 0.462047 CTTCCGGTATGGCTGACACC 60.462 60.000 0.00 0.00 37.80 4.16
839 849 0.462047 CCTTCCGGTATGGCTGACAC 60.462 60.000 0.00 0.00 37.80 3.67
840 850 0.616395 TCCTTCCGGTATGGCTGACA 60.616 55.000 0.00 0.00 37.80 3.58
841 851 0.105039 CTCCTTCCGGTATGGCTGAC 59.895 60.000 0.00 0.00 37.80 3.51
842 852 1.048724 CCTCCTTCCGGTATGGCTGA 61.049 60.000 0.00 0.00 37.80 4.26
843 853 1.447643 CCTCCTTCCGGTATGGCTG 59.552 63.158 0.00 0.00 37.80 4.85
844 854 2.444256 GCCTCCTTCCGGTATGGCT 61.444 63.158 0.00 0.00 38.35 4.75
845 855 2.111251 GCCTCCTTCCGGTATGGC 59.889 66.667 0.00 6.15 37.80 4.40
846 856 2.421739 CGCCTCCTTCCGGTATGG 59.578 66.667 0.00 2.26 40.09 2.74
847 857 1.227263 CACGCCTCCTTCCGGTATG 60.227 63.158 0.00 0.00 0.00 2.39
848 858 1.380785 TCACGCCTCCTTCCGGTAT 60.381 57.895 0.00 0.00 0.00 2.73
849 859 2.036098 TCACGCCTCCTTCCGGTA 59.964 61.111 0.00 0.00 0.00 4.02
850 860 3.692406 GTCACGCCTCCTTCCGGT 61.692 66.667 0.00 0.00 0.00 5.28
851 861 3.649277 CTGTCACGCCTCCTTCCGG 62.649 68.421 0.00 0.00 0.00 5.14
852 862 2.125912 CTGTCACGCCTCCTTCCG 60.126 66.667 0.00 0.00 0.00 4.30
853 863 2.266055 CCTGTCACGCCTCCTTCC 59.734 66.667 0.00 0.00 0.00 3.46
854 864 2.435059 GCCTGTCACGCCTCCTTC 60.435 66.667 0.00 0.00 0.00 3.46
855 865 2.337879 TTTGCCTGTCACGCCTCCTT 62.338 55.000 0.00 0.00 0.00 3.36
856 866 2.818169 TTTGCCTGTCACGCCTCCT 61.818 57.895 0.00 0.00 0.00 3.69
857 867 2.281484 TTTGCCTGTCACGCCTCC 60.281 61.111 0.00 0.00 0.00 4.30
858 868 1.891919 TGTTTGCCTGTCACGCCTC 60.892 57.895 0.00 0.00 0.00 4.70
859 869 2.186826 GTGTTTGCCTGTCACGCCT 61.187 57.895 0.00 0.00 0.00 5.52
860 870 1.795170 ATGTGTTTGCCTGTCACGCC 61.795 55.000 0.00 0.00 35.20 5.68
861 871 0.661187 CATGTGTTTGCCTGTCACGC 60.661 55.000 0.00 0.00 35.20 5.34
862 872 0.943673 TCATGTGTTTGCCTGTCACG 59.056 50.000 0.00 0.00 35.20 4.35
863 873 1.001378 GGTCATGTGTTTGCCTGTCAC 60.001 52.381 0.00 0.00 0.00 3.67
864 874 1.133823 AGGTCATGTGTTTGCCTGTCA 60.134 47.619 0.00 0.00 0.00 3.58
865 875 1.267806 CAGGTCATGTGTTTGCCTGTC 59.732 52.381 0.00 0.00 41.15 3.51
866 876 1.133823 TCAGGTCATGTGTTTGCCTGT 60.134 47.619 8.49 0.00 44.99 4.00
867 877 1.538512 CTCAGGTCATGTGTTTGCCTG 59.461 52.381 0.00 0.00 45.82 4.85
868 878 1.421268 TCTCAGGTCATGTGTTTGCCT 59.579 47.619 0.00 0.00 0.00 4.75
869 879 1.896220 TCTCAGGTCATGTGTTTGCC 58.104 50.000 0.00 0.00 0.00 4.52
870 880 3.565482 TCTTTCTCAGGTCATGTGTTTGC 59.435 43.478 0.00 0.00 0.00 3.68
871 881 5.528690 TCTTCTTTCTCAGGTCATGTGTTTG 59.471 40.000 0.00 0.00 0.00 2.93
872 882 5.684704 TCTTCTTTCTCAGGTCATGTGTTT 58.315 37.500 0.00 0.00 0.00 2.83
873 883 5.296151 TCTTCTTTCTCAGGTCATGTGTT 57.704 39.130 0.00 0.00 0.00 3.32
874 884 4.963318 TCTTCTTTCTCAGGTCATGTGT 57.037 40.909 0.00 0.00 0.00 3.72
875 885 4.094590 GCATCTTCTTTCTCAGGTCATGTG 59.905 45.833 0.00 0.00 0.00 3.21
876 886 4.260170 GCATCTTCTTTCTCAGGTCATGT 58.740 43.478 0.00 0.00 0.00 3.21
877 887 4.259356 TGCATCTTCTTTCTCAGGTCATG 58.741 43.478 0.00 0.00 0.00 3.07
878 888 4.564782 TGCATCTTCTTTCTCAGGTCAT 57.435 40.909 0.00 0.00 0.00 3.06
879 889 4.564782 ATGCATCTTCTTTCTCAGGTCA 57.435 40.909 0.00 0.00 0.00 4.02
880 890 5.184711 AGAATGCATCTTCTTTCTCAGGTC 58.815 41.667 0.00 0.00 33.39 3.85
881 891 5.176741 AGAATGCATCTTCTTTCTCAGGT 57.823 39.130 0.00 0.00 33.39 4.00
882 892 5.236911 GCTAGAATGCATCTTCTTTCTCAGG 59.763 44.000 7.83 0.02 39.71 3.86
883 893 5.236911 GGCTAGAATGCATCTTCTTTCTCAG 59.763 44.000 7.83 1.10 39.71 3.35
884 894 5.121811 GGCTAGAATGCATCTTCTTTCTCA 58.878 41.667 7.83 0.00 39.71 3.27
885 895 4.210955 CGGCTAGAATGCATCTTCTTTCTC 59.789 45.833 7.83 0.00 39.71 2.87
886 896 4.125703 CGGCTAGAATGCATCTTCTTTCT 58.874 43.478 7.83 5.64 39.71 2.52
887 897 3.873952 ACGGCTAGAATGCATCTTCTTTC 59.126 43.478 7.83 0.00 39.71 2.62
888 898 3.878778 ACGGCTAGAATGCATCTTCTTT 58.121 40.909 7.83 0.00 39.71 2.52
889 899 3.550437 ACGGCTAGAATGCATCTTCTT 57.450 42.857 7.83 0.00 39.71 2.52
890 900 3.550437 AACGGCTAGAATGCATCTTCT 57.450 42.857 0.00 3.40 39.71 2.85
891 901 4.621991 TCTAACGGCTAGAATGCATCTTC 58.378 43.478 0.00 0.00 39.71 2.87
892 902 4.672587 TCTAACGGCTAGAATGCATCTT 57.327 40.909 0.00 0.00 39.71 2.40
893 903 4.881019 ATCTAACGGCTAGAATGCATCT 57.119 40.909 0.00 1.57 40.12 2.90
894 904 5.466728 TGAAATCTAACGGCTAGAATGCATC 59.533 40.000 0.00 0.00 40.12 3.91
895 905 5.368145 TGAAATCTAACGGCTAGAATGCAT 58.632 37.500 0.00 0.00 40.12 3.96
896 906 4.765273 TGAAATCTAACGGCTAGAATGCA 58.235 39.130 0.00 0.00 40.12 3.96
897 907 5.734855 TTGAAATCTAACGGCTAGAATGC 57.265 39.130 0.00 0.00 40.12 3.56
898 908 6.483307 TGGATTGAAATCTAACGGCTAGAATG 59.517 38.462 0.00 0.00 40.12 2.67
899 909 6.591935 TGGATTGAAATCTAACGGCTAGAAT 58.408 36.000 0.00 0.00 40.12 2.40
900 910 5.984725 TGGATTGAAATCTAACGGCTAGAA 58.015 37.500 0.00 0.00 40.12 2.10
901 911 5.601662 CTGGATTGAAATCTAACGGCTAGA 58.398 41.667 0.00 0.00 41.00 2.43
902 912 4.212214 GCTGGATTGAAATCTAACGGCTAG 59.788 45.833 3.21 0.00 35.73 3.42
903 913 4.127171 GCTGGATTGAAATCTAACGGCTA 58.873 43.478 3.21 0.00 35.73 3.93
904 914 2.945668 GCTGGATTGAAATCTAACGGCT 59.054 45.455 3.21 0.00 35.73 5.52
905 915 2.682856 TGCTGGATTGAAATCTAACGGC 59.317 45.455 3.21 4.37 35.73 5.68
906 916 3.941483 ACTGCTGGATTGAAATCTAACGG 59.059 43.478 3.21 0.92 35.73 4.44
907 917 4.259970 CGACTGCTGGATTGAAATCTAACG 60.260 45.833 3.21 0.00 35.73 3.18
908 918 4.034510 CCGACTGCTGGATTGAAATCTAAC 59.965 45.833 3.21 0.00 35.73 2.34
909 919 4.081142 TCCGACTGCTGGATTGAAATCTAA 60.081 41.667 3.21 0.00 35.73 2.10
910 920 3.450817 TCCGACTGCTGGATTGAAATCTA 59.549 43.478 3.21 0.00 35.73 1.98
911 921 2.237143 TCCGACTGCTGGATTGAAATCT 59.763 45.455 3.21 0.00 35.73 2.40
912 922 2.632377 TCCGACTGCTGGATTGAAATC 58.368 47.619 0.00 0.00 34.66 2.17
913 923 2.787473 TCCGACTGCTGGATTGAAAT 57.213 45.000 0.00 0.00 0.00 2.17
914 924 2.559698 TTCCGACTGCTGGATTGAAA 57.440 45.000 0.00 0.00 34.91 2.69
915 925 2.559698 TTTCCGACTGCTGGATTGAA 57.440 45.000 0.00 0.00 34.91 2.69
916 926 2.224523 ACTTTTCCGACTGCTGGATTGA 60.225 45.455 0.00 0.00 34.91 2.57
917 927 2.154462 ACTTTTCCGACTGCTGGATTG 58.846 47.619 0.00 0.00 34.91 2.67
918 928 2.427506 GACTTTTCCGACTGCTGGATT 58.572 47.619 0.00 0.00 34.91 3.01
919 929 1.673033 CGACTTTTCCGACTGCTGGAT 60.673 52.381 0.00 0.00 34.91 3.41
920 930 0.319555 CGACTTTTCCGACTGCTGGA 60.320 55.000 0.00 0.00 0.00 3.86
921 931 0.319555 TCGACTTTTCCGACTGCTGG 60.320 55.000 0.00 0.00 0.00 4.85
922 932 3.195041 TCGACTTTTCCGACTGCTG 57.805 52.632 0.00 0.00 0.00 4.41
928 938 6.453092 AGAAAATTAGAGTCGACTTTTCCGA 58.547 36.000 25.30 8.01 36.80 4.55
929 939 6.707599 AGAAAATTAGAGTCGACTTTTCCG 57.292 37.500 25.30 0.00 36.80 4.30
934 944 9.827411 GCAAATAAAGAAAATTAGAGTCGACTT 57.173 29.630 21.08 12.03 0.00 3.01
935 945 8.451748 GGCAAATAAAGAAAATTAGAGTCGACT 58.548 33.333 20.18 20.18 0.00 4.18
936 946 8.234546 TGGCAAATAAAGAAAATTAGAGTCGAC 58.765 33.333 7.70 7.70 0.00 4.20
937 947 8.330466 TGGCAAATAAAGAAAATTAGAGTCGA 57.670 30.769 0.00 0.00 0.00 4.20
938 948 8.964420 TTGGCAAATAAAGAAAATTAGAGTCG 57.036 30.769 0.00 0.00 0.00 4.18
963 973 3.254903 GGGACAAACGACAGGCTATTTTT 59.745 43.478 0.00 0.00 0.00 1.94
964 974 2.817844 GGGACAAACGACAGGCTATTTT 59.182 45.455 0.00 0.00 0.00 1.82
965 975 2.039879 AGGGACAAACGACAGGCTATTT 59.960 45.455 0.00 0.00 0.00 1.40
966 976 1.628846 AGGGACAAACGACAGGCTATT 59.371 47.619 0.00 0.00 0.00 1.73
967 977 1.276622 AGGGACAAACGACAGGCTAT 58.723 50.000 0.00 0.00 0.00 2.97
968 978 1.053424 AAGGGACAAACGACAGGCTA 58.947 50.000 0.00 0.00 0.00 3.93
969 979 0.535102 CAAGGGACAAACGACAGGCT 60.535 55.000 0.00 0.00 0.00 4.58
970 980 1.515521 CCAAGGGACAAACGACAGGC 61.516 60.000 0.00 0.00 0.00 4.85
971 981 0.107831 TCCAAGGGACAAACGACAGG 59.892 55.000 0.00 0.00 0.00 4.00
972 982 2.185004 ATCCAAGGGACAAACGACAG 57.815 50.000 0.00 0.00 32.98 3.51
973 983 2.649531 AATCCAAGGGACAAACGACA 57.350 45.000 0.00 0.00 32.98 4.35
974 984 5.414765 AGATTAAATCCAAGGGACAAACGAC 59.585 40.000 0.00 0.00 32.98 4.34
975 985 5.414454 CAGATTAAATCCAAGGGACAAACGA 59.586 40.000 0.00 0.00 32.98 3.85
976 986 5.414454 TCAGATTAAATCCAAGGGACAAACG 59.586 40.000 0.00 0.00 32.98 3.60
977 987 6.834168 TCAGATTAAATCCAAGGGACAAAC 57.166 37.500 0.00 0.00 32.98 2.93
987 997 9.056005 GCCGCAATATATATCAGATTAAATCCA 57.944 33.333 0.00 0.00 0.00 3.41
988 998 8.223769 CGCCGCAATATATATCAGATTAAATCC 58.776 37.037 0.00 0.00 0.00 3.01
989 999 7.742089 GCGCCGCAATATATATCAGATTAAATC 59.258 37.037 3.15 0.00 0.00 2.17
990 1000 7.307989 GGCGCCGCAATATATATCAGATTAAAT 60.308 37.037 12.58 0.00 0.00 1.40
991 1001 6.018262 GGCGCCGCAATATATATCAGATTAAA 60.018 38.462 12.58 0.00 0.00 1.52
992 1002 5.465390 GGCGCCGCAATATATATCAGATTAA 59.535 40.000 12.58 0.00 0.00 1.40
993 1003 4.988540 GGCGCCGCAATATATATCAGATTA 59.011 41.667 12.58 0.00 0.00 1.75
994 1004 3.809832 GGCGCCGCAATATATATCAGATT 59.190 43.478 12.58 0.00 0.00 2.40
995 1005 3.393800 GGCGCCGCAATATATATCAGAT 58.606 45.455 12.58 0.00 0.00 2.90
996 1006 2.798145 CGGCGCCGCAATATATATCAGA 60.798 50.000 38.48 0.00 0.00 3.27
997 1007 1.522676 CGGCGCCGCAATATATATCAG 59.477 52.381 38.48 4.58 0.00 2.90
998 1008 1.566404 CGGCGCCGCAATATATATCA 58.434 50.000 38.48 0.00 0.00 2.15
1011 1021 3.551915 GTCTAGTTTCGCGGCGCC 61.552 66.667 27.87 19.07 0.00 6.53
1012 1022 2.506438 AGTCTAGTTTCGCGGCGC 60.506 61.111 24.21 24.21 0.00 6.53
1013 1023 2.789203 GCAGTCTAGTTTCGCGGCG 61.789 63.158 17.70 17.70 0.00 6.46
1014 1024 2.453638 GGCAGTCTAGTTTCGCGGC 61.454 63.158 6.13 0.00 0.00 6.53
1015 1025 1.078759 CTGGCAGTCTAGTTTCGCGG 61.079 60.000 6.13 0.00 0.00 6.46
1016 1026 1.687494 GCTGGCAGTCTAGTTTCGCG 61.687 60.000 17.16 0.00 0.00 5.87
1017 1027 0.390472 AGCTGGCAGTCTAGTTTCGC 60.390 55.000 17.16 0.00 0.00 4.70
1018 1028 2.094700 TGTAGCTGGCAGTCTAGTTTCG 60.095 50.000 17.16 0.00 0.00 3.46
1019 1029 3.594603 TGTAGCTGGCAGTCTAGTTTC 57.405 47.619 17.16 6.81 0.00 2.78
1020 1030 3.665190 GTTGTAGCTGGCAGTCTAGTTT 58.335 45.455 17.16 0.00 0.00 2.66
1021 1031 2.352814 CGTTGTAGCTGGCAGTCTAGTT 60.353 50.000 17.16 0.00 0.00 2.24
1022 1032 1.202582 CGTTGTAGCTGGCAGTCTAGT 59.797 52.381 17.16 0.00 0.00 2.57
1023 1033 1.202582 ACGTTGTAGCTGGCAGTCTAG 59.797 52.381 17.16 8.43 0.00 2.43
1024 1034 1.067846 CACGTTGTAGCTGGCAGTCTA 60.068 52.381 17.16 14.47 0.00 2.59
1025 1035 0.319900 CACGTTGTAGCTGGCAGTCT 60.320 55.000 17.16 15.47 0.00 3.24
1026 1036 1.901650 GCACGTTGTAGCTGGCAGTC 61.902 60.000 17.16 8.57 0.00 3.51
1027 1037 1.961277 GCACGTTGTAGCTGGCAGT 60.961 57.895 17.16 5.61 0.00 4.40
1028 1038 1.230635 AAGCACGTTGTAGCTGGCAG 61.231 55.000 10.94 10.94 41.70 4.85
1029 1039 0.034198 TAAGCACGTTGTAGCTGGCA 59.966 50.000 0.00 0.00 41.70 4.92
1030 1040 0.442699 GTAAGCACGTTGTAGCTGGC 59.557 55.000 0.00 0.00 41.70 4.85
1031 1041 0.713883 CGTAAGCACGTTGTAGCTGG 59.286 55.000 0.00 0.00 43.31 4.85
1086 1096 4.742201 CGGACCAGTCCCGTGCTG 62.742 72.222 11.22 0.00 46.96 4.41
1115 1125 3.519930 GGCGACGAGGAGGAGGTC 61.520 72.222 0.00 0.00 0.00 3.85
1116 1126 3.663815 ATGGCGACGAGGAGGAGGT 62.664 63.158 0.00 0.00 0.00 3.85
1117 1127 2.835431 ATGGCGACGAGGAGGAGG 60.835 66.667 0.00 0.00 0.00 4.30
1118 1128 2.415010 CATGGCGACGAGGAGGAG 59.585 66.667 0.00 0.00 0.00 3.69
1119 1129 3.147595 CCATGGCGACGAGGAGGA 61.148 66.667 0.00 0.00 0.00 3.71
1120 1130 4.899239 GCCATGGCGACGAGGAGG 62.899 72.222 23.48 0.00 0.00 4.30
1121 1131 4.899239 GGCCATGGCGACGAGGAG 62.899 72.222 29.90 0.00 43.06 3.69
1130 1140 2.203337 TTCCATAGCGGCCATGGC 60.203 61.111 29.47 29.47 42.36 4.40
1131 1141 0.886490 GACTTCCATAGCGGCCATGG 60.886 60.000 19.68 19.68 43.74 3.66
1132 1142 0.886490 GGACTTCCATAGCGGCCATG 60.886 60.000 2.24 1.14 35.64 3.66
1133 1143 1.451936 GGACTTCCATAGCGGCCAT 59.548 57.895 2.24 0.00 35.64 4.40
1134 1144 2.742116 GGGACTTCCATAGCGGCCA 61.742 63.158 2.24 0.00 37.91 5.36
1135 1145 2.111251 GGGACTTCCATAGCGGCC 59.889 66.667 0.00 0.00 37.91 6.13
1136 1146 2.111251 GGGGACTTCCATAGCGGC 59.889 66.667 0.00 0.00 37.91 6.53
1137 1147 2.131709 TCGGGGACTTCCATAGCGG 61.132 63.158 0.00 0.00 37.91 5.52
1138 1148 1.067582 GTCGGGGACTTCCATAGCG 59.932 63.158 0.00 0.00 37.91 4.26
1139 1149 1.067582 CGTCGGGGACTTCCATAGC 59.932 63.158 0.00 0.00 37.91 2.97
1140 1150 0.384669 GACGTCGGGGACTTCCATAG 59.615 60.000 0.00 0.00 37.91 2.23
1141 1151 1.039233 GGACGTCGGGGACTTCCATA 61.039 60.000 9.92 0.00 46.15 2.74
1142 1152 2.356780 GGACGTCGGGGACTTCCAT 61.357 63.158 9.92 0.00 46.15 3.41
1143 1153 2.993264 GGACGTCGGGGACTTCCA 60.993 66.667 9.92 0.00 46.15 3.53
1144 1154 2.679287 AGGACGTCGGGGACTTCC 60.679 66.667 9.92 12.00 46.90 3.46
1145 1155 2.708865 GGAGGACGTCGGGGACTTC 61.709 68.421 9.92 0.00 31.36 3.01
1146 1156 2.679287 GGAGGACGTCGGGGACTT 60.679 66.667 9.92 0.00 0.00 3.01
1215 1225 2.053277 GTGGAGGGGAGACGGAGAC 61.053 68.421 0.00 0.00 0.00 3.36
1216 1226 2.359404 GTGGAGGGGAGACGGAGA 59.641 66.667 0.00 0.00 0.00 3.71
1217 1227 3.141488 CGTGGAGGGGAGACGGAG 61.141 72.222 0.00 0.00 0.00 4.63
1228 1238 4.680237 TGGTTCAGCGCCGTGGAG 62.680 66.667 2.29 0.00 0.00 3.86
1229 1239 4.680237 CTGGTTCAGCGCCGTGGA 62.680 66.667 2.29 0.00 0.00 4.02
1238 1248 2.743928 GCACGGAGGCTGGTTCAG 60.744 66.667 0.00 0.00 34.12 3.02
1239 1249 4.329545 GGCACGGAGGCTGGTTCA 62.330 66.667 0.00 0.00 40.24 3.18
1246 1256 1.301009 GTATAGCAGGCACGGAGGC 60.301 63.158 0.00 0.00 44.61 4.70
1247 1257 1.007271 CGTATAGCAGGCACGGAGG 60.007 63.158 0.00 0.00 32.19 4.30
1248 1258 4.635925 CGTATAGCAGGCACGGAG 57.364 61.111 0.00 0.00 32.19 4.63
1258 1268 2.465920 GCATCGCACGCGTATAGC 59.534 61.111 13.44 11.25 43.95 2.97
1259 1269 0.109919 TAGGCATCGCACGCGTATAG 60.110 55.000 13.44 6.42 40.74 1.31
1260 1270 0.386352 GTAGGCATCGCACGCGTATA 60.386 55.000 13.44 0.00 40.74 1.47
1261 1271 1.660575 GTAGGCATCGCACGCGTAT 60.661 57.895 13.44 0.00 40.74 3.06
1262 1272 2.278336 GTAGGCATCGCACGCGTA 60.278 61.111 13.44 0.00 40.74 4.42
1276 1286 2.277373 GCGTCGTCTGCTCCGTAG 60.277 66.667 0.00 0.00 0.00 3.51
1277 1287 3.807538 GGCGTCGTCTGCTCCGTA 61.808 66.667 0.00 0.00 0.00 4.02
1292 1302 4.874977 GGAGTAGAGCGCCGTGGC 62.875 72.222 2.29 0.00 37.85 5.01
1293 1303 4.208686 GGGAGTAGAGCGCCGTGG 62.209 72.222 2.29 0.00 37.99 4.94
1294 1304 4.208686 GGGGAGTAGAGCGCCGTG 62.209 72.222 2.29 0.00 37.99 4.94
1297 1307 3.228017 GAGGGGGAGTAGAGCGCC 61.228 72.222 2.29 0.00 37.61 6.53
1298 1308 2.123640 AGAGGGGGAGTAGAGCGC 60.124 66.667 0.00 0.00 0.00 5.92
1299 1309 2.494530 GCAGAGGGGGAGTAGAGCG 61.495 68.421 0.00 0.00 0.00 5.03
1300 1310 2.137528 GGCAGAGGGGGAGTAGAGC 61.138 68.421 0.00 0.00 0.00 4.09
1301 1311 0.325671 TTGGCAGAGGGGGAGTAGAG 60.326 60.000 0.00 0.00 0.00 2.43
1302 1312 0.617820 GTTGGCAGAGGGGGAGTAGA 60.618 60.000 0.00 0.00 0.00 2.59
1303 1313 1.908483 GTTGGCAGAGGGGGAGTAG 59.092 63.158 0.00 0.00 0.00 2.57
1304 1314 1.987855 CGTTGGCAGAGGGGGAGTA 60.988 63.158 0.00 0.00 0.00 2.59
1305 1315 3.322466 CGTTGGCAGAGGGGGAGT 61.322 66.667 0.00 0.00 0.00 3.85
1306 1316 4.785453 GCGTTGGCAGAGGGGGAG 62.785 72.222 0.00 0.00 39.62 4.30
1311 1321 3.850098 AAGGTGGCGTTGGCAGAGG 62.850 63.158 0.00 0.00 42.47 3.69
1312 1322 2.281761 AAGGTGGCGTTGGCAGAG 60.282 61.111 0.00 0.00 42.47 3.35
1313 1323 2.281484 GAAGGTGGCGTTGGCAGA 60.281 61.111 0.00 0.00 42.47 4.26
1314 1324 3.365265 GGAAGGTGGCGTTGGCAG 61.365 66.667 0.00 0.00 42.47 4.85
1323 1333 4.431131 ATGGCAGGCGGAAGGTGG 62.431 66.667 0.00 0.00 0.00 4.61
1324 1334 2.825836 GATGGCAGGCGGAAGGTG 60.826 66.667 0.00 0.00 0.00 4.00
1325 1335 4.115199 GGATGGCAGGCGGAAGGT 62.115 66.667 0.00 0.00 0.00 3.50
1326 1336 3.764160 GAGGATGGCAGGCGGAAGG 62.764 68.421 0.00 0.00 0.00 3.46
1327 1337 2.203126 GAGGATGGCAGGCGGAAG 60.203 66.667 0.00 0.00 0.00 3.46
1328 1338 4.161295 CGAGGATGGCAGGCGGAA 62.161 66.667 0.00 0.00 0.00 4.30
1332 1342 4.925861 GGAGCGAGGATGGCAGGC 62.926 72.222 0.00 0.00 44.88 4.85
1333 1343 4.598894 CGGAGCGAGGATGGCAGG 62.599 72.222 0.00 0.00 44.88 4.85
1368 1378 4.680237 TGAAGAGCCACCCGTGCG 62.680 66.667 0.00 0.00 0.00 5.34
1369 1379 2.167398 TAGTGAAGAGCCACCCGTGC 62.167 60.000 0.00 0.00 37.76 5.34
1370 1380 0.389948 GTAGTGAAGAGCCACCCGTG 60.390 60.000 0.00 0.00 37.76 4.94
1371 1381 1.542187 GGTAGTGAAGAGCCACCCGT 61.542 60.000 0.00 0.00 37.76 5.28
1372 1382 1.218316 GGTAGTGAAGAGCCACCCG 59.782 63.158 0.00 0.00 37.76 5.28
1373 1383 1.218316 CGGTAGTGAAGAGCCACCC 59.782 63.158 0.00 0.00 37.76 4.61
1374 1384 0.108756 GTCGGTAGTGAAGAGCCACC 60.109 60.000 0.00 0.00 37.76 4.61
1375 1385 0.456312 CGTCGGTAGTGAAGAGCCAC 60.456 60.000 0.00 0.00 37.32 5.01
1376 1386 0.607217 TCGTCGGTAGTGAAGAGCCA 60.607 55.000 0.00 0.00 0.00 4.75
1377 1387 0.099082 CTCGTCGGTAGTGAAGAGCC 59.901 60.000 0.00 0.00 37.60 4.70
1378 1388 0.099082 CCTCGTCGGTAGTGAAGAGC 59.901 60.000 0.00 0.00 41.36 4.09
1379 1389 0.099082 GCCTCGTCGGTAGTGAAGAG 59.901 60.000 0.00 0.58 42.05 2.85
1380 1390 1.642037 CGCCTCGTCGGTAGTGAAGA 61.642 60.000 0.00 0.00 34.25 2.87
1381 1391 1.226323 CGCCTCGTCGGTAGTGAAG 60.226 63.158 0.00 0.00 34.25 3.02
1382 1392 2.693762 CCGCCTCGTCGGTAGTGAA 61.694 63.158 0.00 0.00 44.18 3.18
1383 1393 3.129502 CCGCCTCGTCGGTAGTGA 61.130 66.667 0.00 0.00 44.18 3.41
1397 1407 4.484872 GAGGTAGGGGTTGGCCGC 62.485 72.222 0.00 0.00 46.91 6.53
1398 1408 3.793888 GGAGGTAGGGGTTGGCCG 61.794 72.222 0.00 0.00 34.97 6.13
1399 1409 2.286197 AGGAGGTAGGGGTTGGCC 60.286 66.667 0.00 0.00 0.00 5.36
1400 1410 1.205460 TTGAGGAGGTAGGGGTTGGC 61.205 60.000 0.00 0.00 0.00 4.52
1401 1411 0.618981 GTTGAGGAGGTAGGGGTTGG 59.381 60.000 0.00 0.00 0.00 3.77
1402 1412 0.618981 GGTTGAGGAGGTAGGGGTTG 59.381 60.000 0.00 0.00 0.00 3.77
1403 1413 0.549413 GGGTTGAGGAGGTAGGGGTT 60.549 60.000 0.00 0.00 0.00 4.11
1404 1414 1.082392 GGGTTGAGGAGGTAGGGGT 59.918 63.158 0.00 0.00 0.00 4.95
1405 1415 0.691413 GAGGGTTGAGGAGGTAGGGG 60.691 65.000 0.00 0.00 0.00 4.79
1406 1416 0.340208 AGAGGGTTGAGGAGGTAGGG 59.660 60.000 0.00 0.00 0.00 3.53
1407 1417 1.007238 TGAGAGGGTTGAGGAGGTAGG 59.993 57.143 0.00 0.00 0.00 3.18
1408 1418 2.104170 GTGAGAGGGTTGAGGAGGTAG 58.896 57.143 0.00 0.00 0.00 3.18
1409 1419 1.273098 GGTGAGAGGGTTGAGGAGGTA 60.273 57.143 0.00 0.00 0.00 3.08
1410 1420 0.545548 GGTGAGAGGGTTGAGGAGGT 60.546 60.000 0.00 0.00 0.00 3.85
1411 1421 1.608717 CGGTGAGAGGGTTGAGGAGG 61.609 65.000 0.00 0.00 0.00 4.30
1412 1422 1.608717 CCGGTGAGAGGGTTGAGGAG 61.609 65.000 0.00 0.00 0.00 3.69
1413 1423 1.609501 CCGGTGAGAGGGTTGAGGA 60.610 63.158 0.00 0.00 0.00 3.71
1414 1424 2.982130 CCGGTGAGAGGGTTGAGG 59.018 66.667 0.00 0.00 0.00 3.86
1415 1425 2.266055 GCCGGTGAGAGGGTTGAG 59.734 66.667 1.90 0.00 0.00 3.02
1416 1426 3.691342 CGCCGGTGAGAGGGTTGA 61.691 66.667 10.20 0.00 0.00 3.18
1445 1455 3.391665 GAGTGGTGATGGGCGGGAG 62.392 68.421 0.00 0.00 0.00 4.30
1446 1456 3.399181 GAGTGGTGATGGGCGGGA 61.399 66.667 0.00 0.00 0.00 5.14
1447 1457 3.391665 GAGAGTGGTGATGGGCGGG 62.392 68.421 0.00 0.00 0.00 6.13
1448 1458 2.187946 GAGAGTGGTGATGGGCGG 59.812 66.667 0.00 0.00 0.00 6.13
1449 1459 2.202797 CGAGAGTGGTGATGGGCG 60.203 66.667 0.00 0.00 0.00 6.13
1450 1460 1.142748 CTCGAGAGTGGTGATGGGC 59.857 63.158 6.58 0.00 0.00 5.36
1451 1461 1.680522 CCCTCGAGAGTGGTGATGGG 61.681 65.000 15.71 0.00 43.06 4.00
1452 1462 1.819229 CCCTCGAGAGTGGTGATGG 59.181 63.158 15.71 0.00 43.06 3.51
1453 1463 1.142748 GCCCTCGAGAGTGGTGATG 59.857 63.158 15.71 0.00 43.06 3.07
1454 1464 2.418910 CGCCCTCGAGAGTGGTGAT 61.419 63.158 15.71 0.00 43.06 3.06
1455 1465 3.062466 CGCCCTCGAGAGTGGTGA 61.062 66.667 15.71 0.00 43.06 4.02
1456 1466 3.374402 ACGCCCTCGAGAGTGGTG 61.374 66.667 15.71 15.64 43.06 4.17
1457 1467 3.374402 CACGCCCTCGAGAGTGGT 61.374 66.667 15.71 0.00 43.06 4.16
1458 1468 2.549611 CTTCACGCCCTCGAGAGTGG 62.550 65.000 24.61 15.73 44.16 4.00
1459 1469 1.153939 CTTCACGCCCTCGAGAGTG 60.154 63.158 15.71 19.47 36.71 3.51
1460 1470 0.681564 ATCTTCACGCCCTCGAGAGT 60.682 55.000 15.71 8.18 36.71 3.24
1461 1471 0.030101 GATCTTCACGCCCTCGAGAG 59.970 60.000 15.71 0.16 36.71 3.20
1462 1472 1.384989 GGATCTTCACGCCCTCGAGA 61.385 60.000 15.71 0.00 39.41 4.04
1463 1473 1.066587 GGATCTTCACGCCCTCGAG 59.933 63.158 5.13 5.13 39.41 4.04
1464 1474 1.680989 TGGATCTTCACGCCCTCGA 60.681 57.895 0.00 0.00 39.41 4.04
1465 1475 1.519455 GTGGATCTTCACGCCCTCG 60.519 63.158 0.00 0.00 42.43 4.63
1466 1476 0.460987 CTGTGGATCTTCACGCCCTC 60.461 60.000 0.00 0.00 40.31 4.30
1467 1477 1.599047 CTGTGGATCTTCACGCCCT 59.401 57.895 0.00 0.00 40.31 5.19
1468 1478 2.109126 GCTGTGGATCTTCACGCCC 61.109 63.158 0.00 0.00 40.31 6.13
1469 1479 0.955428 TTGCTGTGGATCTTCACGCC 60.955 55.000 12.50 0.00 40.31 5.68
1470 1480 0.166814 GTTGCTGTGGATCTTCACGC 59.833 55.000 0.00 2.88 40.31 5.34
1471 1481 0.798776 GGTTGCTGTGGATCTTCACG 59.201 55.000 0.00 0.00 40.31 4.35
1472 1482 1.168714 GGGTTGCTGTGGATCTTCAC 58.831 55.000 0.00 0.00 38.09 3.18
1473 1483 0.321564 CGGGTTGCTGTGGATCTTCA 60.322 55.000 0.00 0.00 0.00 3.02
1474 1484 1.026718 CCGGGTTGCTGTGGATCTTC 61.027 60.000 0.00 0.00 0.00 2.87
1475 1485 1.002134 CCGGGTTGCTGTGGATCTT 60.002 57.895 0.00 0.00 0.00 2.40
1476 1486 1.918293 TCCGGGTTGCTGTGGATCT 60.918 57.895 0.00 0.00 0.00 2.75
1477 1487 1.745489 GTCCGGGTTGCTGTGGATC 60.745 63.158 0.00 0.00 32.18 3.36
1478 1488 2.351276 GTCCGGGTTGCTGTGGAT 59.649 61.111 0.00 0.00 32.18 3.41
1479 1489 4.308458 CGTCCGGGTTGCTGTGGA 62.308 66.667 0.00 0.00 0.00 4.02
1538 1548 2.222027 CTGTTTCACTTTCGGGAAGCT 58.778 47.619 0.00 0.00 39.04 3.74
1740 1750 1.272490 CCCTCTCGTTGTAGACAGCAA 59.728 52.381 0.00 0.00 0.00 3.91
1858 1871 1.329906 CTGCCTGACGAATGCATCTTC 59.670 52.381 0.00 0.00 33.97 2.87
1863 1876 3.120385 CGCTGCCTGACGAATGCA 61.120 61.111 0.00 0.00 0.00 3.96
1990 2003 1.269958 TGTGGATCCAGAGGTCAGTG 58.730 55.000 16.81 0.00 0.00 3.66
2033 2046 0.610232 AGAGCATTGTCACCCAAGCC 60.610 55.000 0.00 0.00 36.25 4.35
2047 2060 3.531207 CGGCCGAGGATGAGAGCA 61.531 66.667 24.07 0.00 0.00 4.26
2110 2123 0.107703 TCAGATAGGCGCAGTTTGGG 60.108 55.000 10.83 0.00 0.00 4.12
2146 2159 1.738099 CCTGACTGGCGTGTAGTGC 60.738 63.158 0.00 0.00 0.00 4.40
2248 2261 2.166907 TCCAAATTGGTGGTGGTGTT 57.833 45.000 12.28 0.00 39.03 3.32
2260 2273 7.836842 AGTAAAAAGATGGCGTAATCCAAATT 58.163 30.769 0.00 0.00 39.96 1.82
2308 2321 5.020795 GGGAAACAAATTAAAGGCTAGGGA 58.979 41.667 0.00 0.00 0.00 4.20
2358 2371 3.479127 AAACCACAACCGCGGCCTA 62.479 57.895 28.58 0.00 0.00 3.93
2363 2376 1.010125 CACTGAAACCACAACCGCG 60.010 57.895 0.00 0.00 0.00 6.46
2366 2379 1.299089 GCGCACTGAAACCACAACC 60.299 57.895 0.30 0.00 0.00 3.77
2367 2380 1.727467 AGCGCACTGAAACCACAAC 59.273 52.632 11.47 0.00 0.00 3.32
2383 2396 1.559682 TCAAGACCCCATAAGACCAGC 59.440 52.381 0.00 0.00 0.00 4.85
2384 2397 3.200825 ACATCAAGACCCCATAAGACCAG 59.799 47.826 0.00 0.00 0.00 4.00
2385 2398 3.189606 ACATCAAGACCCCATAAGACCA 58.810 45.455 0.00 0.00 0.00 4.02
2386 2399 3.933861 ACATCAAGACCCCATAAGACC 57.066 47.619 0.00 0.00 0.00 3.85
2413 2426 1.129058 AGATCGGCCGATTAGGGTTT 58.871 50.000 39.14 18.12 41.48 3.27
2462 2476 1.171308 CCCCTCTCGTGTTTCTCGTA 58.829 55.000 0.00 0.00 0.00 3.43
2486 2500 0.178846 TCCCCTTGTGATTCCCCTCA 60.179 55.000 0.00 0.00 0.00 3.86
2492 2506 2.484264 CTCGTGTTTCCCCTTGTGATTC 59.516 50.000 0.00 0.00 0.00 2.52
2580 2606 2.019249 CCTAGTTGACCGTGGATCGTA 58.981 52.381 0.00 0.00 37.94 3.43
2591 2617 3.119708 ACCGTGTATCGTTCCTAGTTGAC 60.120 47.826 0.00 0.00 37.94 3.18
2601 2627 0.887933 ACCGGTTACCGTGTATCGTT 59.112 50.000 22.78 0.00 46.80 3.85
2761 2798 3.621558 ACTTTCTAGGGTTAGCATTGGC 58.378 45.455 0.00 0.00 41.61 4.52
2785 2822 4.781087 AGACTATCTATACTCCTCCTCGCT 59.219 45.833 0.00 0.00 0.00 4.93
3046 3085 2.577059 GACATCCGGCCTCGACAA 59.423 61.111 0.00 0.00 39.00 3.18
3093 3132 0.601558 GGAGCGTCAACCACTACAGA 59.398 55.000 0.00 0.00 0.00 3.41
3143 3182 0.035056 CCAACGGAAGGAGCCAAGAT 60.035 55.000 0.00 0.00 0.00 2.40
3285 3324 0.903454 TCCTCTCCGAACTTCCACCC 60.903 60.000 0.00 0.00 0.00 4.61
3286 3325 0.533032 CTCCTCTCCGAACTTCCACC 59.467 60.000 0.00 0.00 0.00 4.61
3309 3348 3.253677 AGGCTATCGAAGATAAGGTGACG 59.746 47.826 0.00 0.00 45.12 4.35
3310 3349 4.857509 AGGCTATCGAAGATAAGGTGAC 57.142 45.455 0.00 0.00 45.12 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.