Multiple sequence alignment - TraesCS1A01G202100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G202100 chr1A 100.000 4372 0 0 1 4372 363419421 363423792 0.000000e+00 8074
1 TraesCS1A01G202100 chr1A 83.422 2262 253 74 588 2813 363656186 363654011 0.000000e+00 1988
2 TraesCS1A01G202100 chr1A 87.132 272 23 7 3104 3373 363653764 363653503 9.190000e-77 298
3 TraesCS1A01G202100 chr1A 98.230 113 2 0 2811 2923 363653899 363653787 9.590000e-47 198
4 TraesCS1A01G202100 chr1A 93.600 125 8 0 336 460 363419684 363419808 2.080000e-43 187
5 TraesCS1A01G202100 chr1A 93.600 125 8 0 264 388 363419756 363419880 2.080000e-43 187
6 TraesCS1A01G202100 chr1B 89.102 1615 93 31 408 1985 392150115 392151683 0.000000e+00 1930
7 TraesCS1A01G202100 chr1B 84.182 1473 143 58 588 2018 392530461 392529037 0.000000e+00 1347
8 TraesCS1A01G202100 chr1B 91.026 312 23 2 24 330 392149870 392150181 2.430000e-112 416
9 TraesCS1A01G202100 chr1B 93.165 278 19 0 3095 3372 392528032 392527755 4.070000e-110 409
10 TraesCS1A01G202100 chr1B 97.561 205 5 0 2068 2272 392151755 392151959 6.960000e-93 351
11 TraesCS1A01G202100 chr1B 97.345 113 3 0 2811 2923 392528177 392528065 4.460000e-45 193
12 TraesCS1A01G202100 chr1B 94.030 67 4 0 336 402 392150115 392150181 7.740000e-18 102
13 TraesCS1A01G202100 chr1D 85.280 1250 112 37 592 1819 291588540 291587341 0.000000e+00 1223
14 TraesCS1A01G202100 chr1D 90.868 876 28 21 2068 2924 291084542 291085384 0.000000e+00 1127
15 TraesCS1A01G202100 chr1D 92.297 714 47 4 702 1413 291083104 291083811 0.000000e+00 1007
16 TraesCS1A01G202100 chr1D 85.510 628 60 16 3383 3985 291085772 291086393 1.030000e-175 627
17 TraesCS1A01G202100 chr1D 94.220 346 20 0 1458 1803 291083908 291084253 2.990000e-146 529
18 TraesCS1A01G202100 chr1D 83.026 542 72 8 1838 2367 291587245 291586712 1.420000e-129 473
19 TraesCS1A01G202100 chr1D 94.444 288 16 0 3095 3382 291085418 291085705 1.120000e-120 444
20 TraesCS1A01G202100 chr1D 86.000 350 16 12 4030 4372 291086467 291086790 1.160000e-90 344
21 TraesCS1A01G202100 chr1D 86.765 272 24 10 3104 3373 291586070 291585809 4.280000e-75 292
22 TraesCS1A01G202100 chr1D 96.000 150 5 1 1836 1985 291084321 291084469 4.370000e-60 243
23 TraesCS1A01G202100 chr1D 98.230 113 2 0 2811 2923 291586205 291586093 9.590000e-47 198
24 TraesCS1A01G202100 chr1D 87.578 161 18 2 2463 2621 291586653 291586493 7.470000e-43 185
25 TraesCS1A01G202100 chr1D 94.393 107 4 2 598 704 291081827 291081931 3.500000e-36 163
26 TraesCS1A01G202100 chr1D 91.667 72 6 0 336 407 291081674 291081745 2.780000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G202100 chr1A 363419421 363423792 4371 False 8074.000000 8074 100.000000 1 4372 1 chr1A.!!$F1 4371
1 TraesCS1A01G202100 chr1A 363653503 363656186 2683 True 828.000000 1988 89.594667 588 3373 3 chr1A.!!$R1 2785
2 TraesCS1A01G202100 chr1B 392149870 392151959 2089 False 699.750000 1930 92.929750 24 2272 4 chr1B.!!$F1 2248
3 TraesCS1A01G202100 chr1B 392527755 392530461 2706 True 649.666667 1347 91.564000 588 3372 3 chr1B.!!$R1 2784
4 TraesCS1A01G202100 chr1D 291081674 291086790 5116 False 509.333333 1127 91.711000 336 4372 9 chr1D.!!$F1 4036
5 TraesCS1A01G202100 chr1D 291585809 291588540 2731 True 474.200000 1223 88.175800 592 3373 5 chr1D.!!$R1 2781

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
423 429 0.031994 GTTGGCATGGACACAACCAC 59.968 55.0 0.0 0.0 43.03 4.16 F
431 437 0.248458 GGACACAACCACGCAAACTG 60.248 55.0 0.0 0.0 0.00 3.16 F
472 478 0.317479 AAGCACTAAGAGCCGTTCGT 59.683 50.0 0.0 0.0 0.00 3.85 F
1316 2538 0.320508 GACCTGGGTGTTCTTCCGTC 60.321 60.0 0.0 0.0 0.00 4.79 F
2415 3839 0.544697 TATTTTCCCCCTCGGTCTGC 59.455 55.0 0.0 0.0 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2417 3841 0.174617 TCAGAACTCACACGCACACA 59.825 50.0 0.00 0.0 0.00 3.72 R
2421 3845 0.596082 TCGATCAGAACTCACACGCA 59.404 50.0 0.00 0.0 0.00 5.24 R
2422 3846 1.263776 CTCGATCAGAACTCACACGC 58.736 55.0 0.00 0.0 0.00 5.34 R
2627 4061 0.169894 GCAAGCAAACTCAGCTAGGC 59.830 55.0 0.00 0.0 42.53 3.93 R
3613 5305 0.105408 AAAACACGTGGCGTCTAGGT 59.895 50.0 21.57 0.0 38.32 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 9.321562 AGCATTAAGGCAATTCAAAATAATGAG 57.678 29.630 15.35 0.00 33.33 2.90
73 74 9.321562 CATTAAGGCAATTCAAAATAATGAGCT 57.678 29.630 0.00 0.00 33.33 4.09
76 77 7.120923 AGGCAATTCAAAATAATGAGCTCAT 57.879 32.000 23.75 23.75 38.41 2.90
77 78 6.984474 AGGCAATTCAAAATAATGAGCTCATG 59.016 34.615 29.34 17.33 36.56 3.07
106 107 4.750598 GGCTTCTTCCGAATTAGGATGTAC 59.249 45.833 16.63 9.53 40.48 2.90
111 112 5.815740 TCTTCCGAATTAGGATGTACAAAGC 59.184 40.000 16.63 0.00 40.48 3.51
129 134 2.288666 AGCCAACACTAACACACACAG 58.711 47.619 0.00 0.00 0.00 3.66
141 146 2.288457 ACACACACAGAGGATCAAGTCG 60.288 50.000 0.00 0.00 37.82 4.18
156 161 6.086502 GGATCAAGTCGTATAAGATCGAAACG 59.913 42.308 0.00 6.60 36.76 3.60
164 169 5.508573 CGTATAAGATCGAAACGATGCCTAG 59.491 44.000 11.26 0.00 47.00 3.02
244 250 4.217118 ACTTGATGAGCCAACAAAGATGAC 59.783 41.667 0.00 0.00 0.00 3.06
268 274 1.880796 CACACGCGATTCCGGCATA 60.881 57.895 15.93 0.00 36.06 3.14
269 275 1.591594 ACACGCGATTCCGGCATAG 60.592 57.895 15.93 0.00 36.06 2.23
270 276 1.299850 CACGCGATTCCGGCATAGA 60.300 57.895 15.93 0.00 36.06 1.98
271 277 1.299926 ACGCGATTCCGGCATAGAC 60.300 57.895 15.93 0.00 36.06 2.59
272 278 1.299850 CGCGATTCCGGCATAGACA 60.300 57.895 0.00 0.00 36.06 3.41
273 279 0.667487 CGCGATTCCGGCATAGACAT 60.667 55.000 0.00 0.00 36.06 3.06
274 280 1.402325 CGCGATTCCGGCATAGACATA 60.402 52.381 0.00 0.00 36.06 2.29
275 281 2.683968 GCGATTCCGGCATAGACATAA 58.316 47.619 0.00 0.00 36.06 1.90
276 282 2.412089 GCGATTCCGGCATAGACATAAC 59.588 50.000 0.00 0.00 36.06 1.89
277 283 2.993899 CGATTCCGGCATAGACATAACC 59.006 50.000 0.00 0.00 0.00 2.85
278 284 3.554129 CGATTCCGGCATAGACATAACCA 60.554 47.826 0.00 0.00 0.00 3.67
279 285 4.579869 GATTCCGGCATAGACATAACCAT 58.420 43.478 0.00 0.00 0.00 3.55
280 286 3.401033 TCCGGCATAGACATAACCATG 57.599 47.619 0.00 0.00 38.21 3.66
281 287 1.806542 CCGGCATAGACATAACCATGC 59.193 52.381 0.00 0.00 42.39 4.06
282 288 2.493035 CGGCATAGACATAACCATGCA 58.507 47.619 7.60 0.00 44.40 3.96
283 289 2.877786 CGGCATAGACATAACCATGCAA 59.122 45.455 7.60 0.00 44.40 4.08
284 290 3.314913 CGGCATAGACATAACCATGCAAA 59.685 43.478 7.60 0.00 44.40 3.68
285 291 4.022935 CGGCATAGACATAACCATGCAAAT 60.023 41.667 7.60 0.00 44.40 2.32
286 292 5.507817 CGGCATAGACATAACCATGCAAATT 60.508 40.000 7.60 0.00 44.40 1.82
287 293 5.693104 GGCATAGACATAACCATGCAAATTG 59.307 40.000 7.60 0.00 44.40 2.32
288 294 5.693104 GCATAGACATAACCATGCAAATTGG 59.307 40.000 3.18 3.18 42.61 3.16
289 295 6.461370 GCATAGACATAACCATGCAAATTGGA 60.461 38.462 11.80 0.00 42.61 3.53
290 296 5.999205 AGACATAACCATGCAAATTGGAA 57.001 34.783 11.80 0.06 37.69 3.53
291 297 6.357579 AGACATAACCATGCAAATTGGAAA 57.642 33.333 11.80 0.00 37.69 3.13
292 298 6.165577 AGACATAACCATGCAAATTGGAAAC 58.834 36.000 11.80 0.00 37.69 2.78
293 299 5.244755 ACATAACCATGCAAATTGGAAACC 58.755 37.500 11.80 0.00 37.69 3.27
294 300 5.012975 ACATAACCATGCAAATTGGAAACCT 59.987 36.000 11.80 0.00 37.69 3.50
295 301 4.436113 AACCATGCAAATTGGAAACCTT 57.564 36.364 11.80 0.00 37.69 3.50
296 302 3.742385 ACCATGCAAATTGGAAACCTTG 58.258 40.909 11.80 0.00 37.69 3.61
297 303 3.136260 ACCATGCAAATTGGAAACCTTGT 59.864 39.130 11.80 0.00 37.69 3.16
298 304 3.499157 CCATGCAAATTGGAAACCTTGTG 59.501 43.478 0.00 0.00 36.26 3.33
299 305 2.559440 TGCAAATTGGAAACCTTGTGC 58.441 42.857 0.00 0.00 0.00 4.57
300 306 2.093288 TGCAAATTGGAAACCTTGTGCA 60.093 40.909 0.00 0.00 38.35 4.57
301 307 2.287644 GCAAATTGGAAACCTTGTGCAC 59.712 45.455 10.75 10.75 0.00 4.57
302 308 3.529533 CAAATTGGAAACCTTGTGCACA 58.470 40.909 17.42 17.42 0.00 4.57
303 309 3.902881 AATTGGAAACCTTGTGCACAA 57.097 38.095 29.36 29.36 0.00 3.33
304 310 4.420522 AATTGGAAACCTTGTGCACAAT 57.579 36.364 31.17 17.58 35.02 2.71
305 311 5.543507 AATTGGAAACCTTGTGCACAATA 57.456 34.783 31.17 12.00 35.02 1.90
306 312 4.314740 TTGGAAACCTTGTGCACAATAC 57.685 40.909 31.17 18.30 35.02 1.89
307 313 3.291584 TGGAAACCTTGTGCACAATACA 58.708 40.909 31.17 20.68 35.02 2.29
308 314 3.067461 TGGAAACCTTGTGCACAATACAC 59.933 43.478 31.17 19.94 38.55 2.90
309 315 3.067461 GGAAACCTTGTGCACAATACACA 59.933 43.478 31.17 9.64 45.90 3.72
317 323 1.879380 TGCACAATACACAAGCACTCC 59.121 47.619 0.00 0.00 0.00 3.85
318 324 1.879380 GCACAATACACAAGCACTCCA 59.121 47.619 0.00 0.00 0.00 3.86
319 325 2.095567 GCACAATACACAAGCACTCCAG 60.096 50.000 0.00 0.00 0.00 3.86
320 326 3.402110 CACAATACACAAGCACTCCAGA 58.598 45.455 0.00 0.00 0.00 3.86
321 327 3.187227 CACAATACACAAGCACTCCAGAC 59.813 47.826 0.00 0.00 0.00 3.51
322 328 2.370281 ATACACAAGCACTCCAGACG 57.630 50.000 0.00 0.00 0.00 4.18
323 329 0.317160 TACACAAGCACTCCAGACGG 59.683 55.000 0.00 0.00 0.00 4.79
324 330 1.069765 CACAAGCACTCCAGACGGT 59.930 57.895 0.00 0.00 0.00 4.83
325 331 0.317160 CACAAGCACTCCAGACGGTA 59.683 55.000 0.00 0.00 0.00 4.02
326 332 1.045407 ACAAGCACTCCAGACGGTAA 58.955 50.000 0.00 0.00 0.00 2.85
327 333 1.000955 ACAAGCACTCCAGACGGTAAG 59.999 52.381 0.00 0.00 0.00 2.34
328 334 1.272490 CAAGCACTCCAGACGGTAAGA 59.728 52.381 0.00 0.00 0.00 2.10
329 335 1.178276 AGCACTCCAGACGGTAAGAG 58.822 55.000 0.00 1.28 0.00 2.85
330 336 0.458716 GCACTCCAGACGGTAAGAGC 60.459 60.000 0.00 0.00 0.00 4.09
331 337 0.173708 CACTCCAGACGGTAAGAGCC 59.826 60.000 0.00 0.00 0.00 4.70
402 408 1.484240 AGCACTCCAGATGGTAAGAGC 59.516 52.381 0.00 0.73 36.34 4.09
404 410 1.115467 ACTCCAGATGGTAAGAGCCG 58.885 55.000 0.00 0.00 36.34 5.52
405 411 1.115467 CTCCAGATGGTAAGAGCCGT 58.885 55.000 0.00 0.00 36.34 5.68
406 412 1.482593 CTCCAGATGGTAAGAGCCGTT 59.517 52.381 0.00 0.00 36.34 4.44
407 413 1.207089 TCCAGATGGTAAGAGCCGTTG 59.793 52.381 0.00 0.00 36.34 4.10
408 414 1.656652 CAGATGGTAAGAGCCGTTGG 58.343 55.000 0.00 0.00 0.00 3.77
419 425 3.756802 CCGTTGGCATGGACACAA 58.243 55.556 0.13 0.00 0.00 3.33
420 426 1.285641 CCGTTGGCATGGACACAAC 59.714 57.895 0.13 0.00 40.67 3.32
421 427 1.285641 CGTTGGCATGGACACAACC 59.714 57.895 0.00 0.00 40.92 3.77
422 428 1.451337 CGTTGGCATGGACACAACCA 61.451 55.000 0.00 0.00 40.92 3.67
423 429 0.031994 GTTGGCATGGACACAACCAC 59.968 55.000 0.00 0.00 43.03 4.16
424 430 1.451337 TTGGCATGGACACAACCACG 61.451 55.000 0.00 0.00 43.03 4.94
425 431 2.255252 GCATGGACACAACCACGC 59.745 61.111 0.00 0.00 41.65 5.34
426 432 2.551006 GCATGGACACAACCACGCA 61.551 57.895 0.00 0.00 46.45 5.24
427 433 2.028936 CATGGACACAACCACGCAA 58.971 52.632 0.00 0.00 43.03 4.85
428 434 0.383590 CATGGACACAACCACGCAAA 59.616 50.000 0.00 0.00 43.03 3.68
429 435 0.383949 ATGGACACAACCACGCAAAC 59.616 50.000 0.00 0.00 43.03 2.93
430 436 0.678366 TGGACACAACCACGCAAACT 60.678 50.000 0.00 0.00 34.77 2.66
431 437 0.248458 GGACACAACCACGCAAACTG 60.248 55.000 0.00 0.00 0.00 3.16
432 438 0.248458 GACACAACCACGCAAACTGG 60.248 55.000 0.00 0.00 34.62 4.00
433 439 0.678366 ACACAACCACGCAAACTGGA 60.678 50.000 0.00 0.00 32.55 3.86
434 440 0.453793 CACAACCACGCAAACTGGAA 59.546 50.000 0.00 0.00 32.55 3.53
435 441 1.135257 CACAACCACGCAAACTGGAAA 60.135 47.619 0.00 0.00 32.55 3.13
436 442 1.135228 ACAACCACGCAAACTGGAAAC 60.135 47.619 0.00 0.00 32.55 2.78
437 443 0.458260 AACCACGCAAACTGGAAACC 59.542 50.000 0.00 0.00 32.55 3.27
438 444 1.008995 CCACGCAAACTGGAAACCG 60.009 57.895 0.00 0.00 0.00 4.44
439 445 1.720694 CCACGCAAACTGGAAACCGT 61.721 55.000 0.00 0.00 0.00 4.83
440 446 0.591236 CACGCAAACTGGAAACCGTG 60.591 55.000 0.00 0.00 39.75 4.94
441 447 1.027792 ACGCAAACTGGAAACCGTGT 61.028 50.000 0.00 0.00 0.00 4.49
442 448 0.591236 CGCAAACTGGAAACCGTGTG 60.591 55.000 0.00 0.00 0.00 3.82
443 449 0.869880 GCAAACTGGAAACCGTGTGC 60.870 55.000 10.27 10.27 35.49 4.57
444 450 0.453793 CAAACTGGAAACCGTGTGCA 59.546 50.000 0.00 0.00 0.00 4.57
445 451 0.454196 AAACTGGAAACCGTGTGCAC 59.546 50.000 10.75 10.75 0.00 4.57
446 452 0.678366 AACTGGAAACCGTGTGCACA 60.678 50.000 17.42 17.42 0.00 4.57
447 453 0.678366 ACTGGAAACCGTGTGCACAA 60.678 50.000 23.59 1.72 0.00 3.33
448 454 0.667993 CTGGAAACCGTGTGCACAAT 59.332 50.000 23.59 7.46 0.00 2.71
449 455 1.876799 CTGGAAACCGTGTGCACAATA 59.123 47.619 23.59 0.00 0.00 1.90
450 456 1.604755 TGGAAACCGTGTGCACAATAC 59.395 47.619 23.59 8.63 0.00 1.89
451 457 1.604755 GGAAACCGTGTGCACAATACA 59.395 47.619 23.59 0.00 0.00 2.29
452 458 2.603652 GGAAACCGTGTGCACAATACAC 60.604 50.000 23.59 7.80 43.73 2.90
453 459 1.669604 AACCGTGTGCACAATACACA 58.330 45.000 23.59 0.00 46.65 3.72
462 468 4.747540 TGCACAATACACAAGCACTAAG 57.252 40.909 0.00 0.00 0.00 2.18
463 469 4.384940 TGCACAATACACAAGCACTAAGA 58.615 39.130 0.00 0.00 0.00 2.10
472 478 0.317479 AAGCACTAAGAGCCGTTCGT 59.683 50.000 0.00 0.00 0.00 3.85
501 507 3.389687 AAACATTCGTCGATGCATGAC 57.610 42.857 21.66 11.32 0.00 3.06
508 514 1.533129 CGTCGATGCATGACTAACGGA 60.533 52.381 19.93 1.46 34.17 4.69
538 544 4.286910 CGACACTTACCCACAATGTTTTG 58.713 43.478 0.00 0.00 38.86 2.44
564 570 9.366216 GTATTTTTCCAAAAAGTATAGGCAAGG 57.634 33.333 3.74 0.00 40.78 3.61
567 573 4.595986 TCCAAAAAGTATAGGCAAGGACC 58.404 43.478 0.00 0.00 0.00 4.46
584 590 2.260869 CCGAAGCTGTGTTGTGGGG 61.261 63.158 0.00 0.00 0.00 4.96
618 641 6.089954 GCTGCTTTCCAAACTGAAATTATCAC 59.910 38.462 0.00 0.00 33.98 3.06
784 1994 2.685897 AGGACTCGATCTACTTGTCAGC 59.314 50.000 1.81 0.00 0.00 4.26
793 2003 2.822561 TCTACTTGTCAGCTGTCTCTGG 59.177 50.000 14.67 3.39 34.91 3.86
806 2018 2.158519 TGTCTCTGGACTCCACACACTA 60.159 50.000 0.00 0.00 42.54 2.74
812 2024 3.092301 TGGACTCCACACACTATCTCTG 58.908 50.000 0.00 0.00 0.00 3.35
813 2025 3.093057 GGACTCCACACACTATCTCTGT 58.907 50.000 0.00 0.00 0.00 3.41
814 2026 4.263771 TGGACTCCACACACTATCTCTGTA 60.264 45.833 0.00 0.00 0.00 2.74
815 2027 4.096682 GGACTCCACACACTATCTCTGTAC 59.903 50.000 0.00 0.00 0.00 2.90
858 2070 0.847373 TGCCTAACTTCCCCACAACA 59.153 50.000 0.00 0.00 0.00 3.33
877 2089 1.734465 CACCGAGCAAAAGGAGCTAAG 59.266 52.381 0.00 0.00 43.58 2.18
913 2125 3.664240 GGTTTCCACCTTACCCTGG 57.336 57.895 0.00 0.00 40.44 4.45
950 2162 2.188829 GCACTGGCACTCTGTTGCA 61.189 57.895 6.40 0.00 44.94 4.08
952 2164 0.816825 CACTGGCACTCTGTTGCACT 60.817 55.000 0.00 0.00 44.94 4.40
954 2166 0.816825 CTGGCACTCTGTTGCACTGT 60.817 55.000 0.00 0.00 44.94 3.55
1197 2416 6.127814 GGTTAAATGGAGGTTGCTAACTAACC 60.128 42.308 0.00 0.00 46.26 2.85
1208 2427 7.800767 GGTTGCTAACTAACCAACTAACTAAC 58.199 38.462 0.00 0.00 45.43 2.34
1209 2428 7.658982 GGTTGCTAACTAACCAACTAACTAACT 59.341 37.037 0.00 0.00 45.43 2.24
1210 2429 8.493547 GTTGCTAACTAACCAACTAACTAACTG 58.506 37.037 0.00 0.00 36.73 3.16
1211 2430 7.729116 TGCTAACTAACCAACTAACTAACTGT 58.271 34.615 0.00 0.00 0.00 3.55
1239 2458 6.834168 ACCTTGAAACTTCAGAAAACTTCA 57.166 33.333 0.00 0.00 38.61 3.02
1244 2463 5.890985 TGAAACTTCAGAAAACTTCATGGGA 59.109 36.000 0.00 0.00 32.50 4.37
1247 2466 5.885465 ACTTCAGAAAACTTCATGGGAGAT 58.115 37.500 0.00 0.00 0.00 2.75
1254 2475 7.012138 CAGAAAACTTCATGGGAGATAGATGTG 59.988 40.741 0.00 0.00 0.00 3.21
1261 2482 7.379059 TCATGGGAGATAGATGTGTGTAATT 57.621 36.000 0.00 0.00 0.00 1.40
1267 2488 8.585881 GGGAGATAGATGTGTGTAATTTAGCTA 58.414 37.037 0.00 0.00 0.00 3.32
1316 2538 0.320508 GACCTGGGTGTTCTTCCGTC 60.321 60.000 0.00 0.00 0.00 4.79
1428 2677 2.572290 AGTGCCAACCAAGACTAACAC 58.428 47.619 0.00 0.00 0.00 3.32
1482 2756 2.477825 AGCATGCATAGCTTACTGTCG 58.522 47.619 21.98 0.00 39.87 4.35
1611 2885 5.464722 CACAGGTATGCAAGACAGATATGTC 59.535 44.000 12.62 12.62 39.00 3.06
1627 2903 8.010105 ACAGATATGTCTTTCCTCTTCTATCCT 58.990 37.037 0.00 0.00 30.42 3.24
1735 3012 1.492133 TTCAGAGGTTCCCCCAGCAG 61.492 60.000 0.00 0.00 34.66 4.24
1807 3084 4.764172 CCCATTCATAGCTGGCTAGATAC 58.236 47.826 0.00 0.00 31.45 2.24
1819 3096 7.163441 AGCTGGCTAGATACTACTAGTAGAAC 58.837 42.308 31.93 21.34 41.10 3.01
1820 3097 7.016858 AGCTGGCTAGATACTACTAGTAGAACT 59.983 40.741 31.93 25.58 41.10 3.01
2041 3407 3.103738 GCGATTGCTTGAATGTTAGCAG 58.896 45.455 0.00 0.00 46.95 4.24
2043 3409 4.201812 GCGATTGCTTGAATGTTAGCAGTA 60.202 41.667 0.00 0.00 46.95 2.74
2045 3411 5.734498 CGATTGCTTGAATGTTAGCAGTAAC 59.266 40.000 0.00 0.00 46.95 2.50
2146 3564 1.153289 GCACCACGCCATCATCTCT 60.153 57.895 0.00 0.00 32.94 3.10
2311 3729 2.739287 TACCCGGCTTTGAACGCG 60.739 61.111 3.53 3.53 0.00 6.01
2314 3732 4.424430 CCGGCTTTGAACGCGTCG 62.424 66.667 14.44 10.05 0.00 5.12
2332 3756 3.833645 TCCTCGGCGAACATCGGG 61.834 66.667 12.13 7.74 40.84 5.14
2401 3825 7.011389 GCTTCAAAAGTTTCAGCCACTTATTTT 59.989 33.333 3.93 0.00 33.12 1.82
2411 3835 1.283905 CCACTTATTTTCCCCCTCGGT 59.716 52.381 0.00 0.00 0.00 4.69
2412 3836 2.640184 CACTTATTTTCCCCCTCGGTC 58.360 52.381 0.00 0.00 0.00 4.79
2413 3837 2.238898 CACTTATTTTCCCCCTCGGTCT 59.761 50.000 0.00 0.00 0.00 3.85
2414 3838 2.238898 ACTTATTTTCCCCCTCGGTCTG 59.761 50.000 0.00 0.00 0.00 3.51
2415 3839 0.544697 TATTTTCCCCCTCGGTCTGC 59.455 55.000 0.00 0.00 0.00 4.26
2416 3840 1.497309 ATTTTCCCCCTCGGTCTGCA 61.497 55.000 0.00 0.00 0.00 4.41
2417 3841 1.497309 TTTTCCCCCTCGGTCTGCAT 61.497 55.000 0.00 0.00 0.00 3.96
2418 3842 2.196997 TTTCCCCCTCGGTCTGCATG 62.197 60.000 0.00 0.00 0.00 4.06
2419 3843 3.402681 CCCCCTCGGTCTGCATGT 61.403 66.667 0.00 0.00 0.00 3.21
2420 3844 2.124983 CCCCTCGGTCTGCATGTG 60.125 66.667 0.00 0.00 0.00 3.21
2421 3845 2.665000 CCCTCGGTCTGCATGTGT 59.335 61.111 0.00 0.00 0.00 3.72
2422 3846 1.742880 CCCTCGGTCTGCATGTGTG 60.743 63.158 0.00 0.00 0.00 3.82
2431 3855 3.333414 GCATGTGTGCGTGTGAGT 58.667 55.556 0.00 0.00 42.28 3.41
2441 3865 1.263776 GCGTGTGAGTTCTGATCGAG 58.736 55.000 0.00 0.00 0.00 4.04
2456 3884 5.750547 TCTGATCGAGCAGTGTAATTGATTC 59.249 40.000 28.24 0.00 37.20 2.52
2473 3907 8.665643 AATTGATTCTTCTTTCATGCACAAAA 57.334 26.923 0.00 0.00 0.00 2.44
2474 3908 8.665643 ATTGATTCTTCTTTCATGCACAAAAA 57.334 26.923 0.00 0.00 0.00 1.94
2475 3909 8.665643 TTGATTCTTCTTTCATGCACAAAAAT 57.334 26.923 0.00 0.00 0.00 1.82
2490 3924 6.256104 TGCACAAAAATGAACAGTTTGATCTG 59.744 34.615 15.62 7.67 40.80 2.90
2593 4027 2.282180 ATGCCAACACCACGGGAC 60.282 61.111 0.00 0.00 0.00 4.46
2621 4055 1.296056 CCCTACGTTCTTTGCCGGTG 61.296 60.000 1.90 0.00 0.00 4.94
2626 4060 0.234884 CGTTCTTTGCCGGTGAGTTC 59.765 55.000 1.90 0.00 0.00 3.01
2627 4061 0.234884 GTTCTTTGCCGGTGAGTTCG 59.765 55.000 1.90 0.00 0.00 3.95
2646 4085 0.169894 GCCTAGCTGAGTTTGCTTGC 59.830 55.000 0.00 0.00 41.46 4.01
2666 4105 3.696051 TGCTGGGCTCAGAATTATGTTTC 59.304 43.478 20.53 0.00 43.49 2.78
2731 4191 5.000591 TCTTTTCAGCAATACCATCAACGA 58.999 37.500 0.00 0.00 0.00 3.85
2924 4498 0.685097 TCACTCACAAGCAGGTACCC 59.315 55.000 8.74 0.00 0.00 3.69
2927 4501 0.250513 CTCACAAGCAGGTACCCCTC 59.749 60.000 8.74 0.00 39.89 4.30
2929 4503 1.151899 ACAAGCAGGTACCCCTCCA 60.152 57.895 8.74 0.00 39.89 3.86
2930 4504 0.550147 ACAAGCAGGTACCCCTCCAT 60.550 55.000 8.74 0.00 39.89 3.41
2931 4505 0.181350 CAAGCAGGTACCCCTCCATC 59.819 60.000 8.74 0.00 39.89 3.51
2932 4506 0.253160 AAGCAGGTACCCCTCCATCA 60.253 55.000 8.74 0.00 39.89 3.07
2933 4507 0.983378 AGCAGGTACCCCTCCATCAC 60.983 60.000 8.74 0.00 39.89 3.06
2934 4508 1.271840 GCAGGTACCCCTCCATCACA 61.272 60.000 8.74 0.00 39.89 3.58
2935 4509 1.285280 CAGGTACCCCTCCATCACAA 58.715 55.000 8.74 0.00 39.89 3.33
2936 4510 1.633432 CAGGTACCCCTCCATCACAAA 59.367 52.381 8.74 0.00 39.89 2.83
2937 4511 2.242196 CAGGTACCCCTCCATCACAAAT 59.758 50.000 8.74 0.00 39.89 2.32
2938 4512 3.458118 CAGGTACCCCTCCATCACAAATA 59.542 47.826 8.74 0.00 39.89 1.40
2939 4513 3.458487 AGGTACCCCTCCATCACAAATAC 59.542 47.826 8.74 0.00 35.62 1.89
2940 4514 3.201266 GGTACCCCTCCATCACAAATACA 59.799 47.826 0.00 0.00 0.00 2.29
2941 4515 4.324719 GGTACCCCTCCATCACAAATACAA 60.325 45.833 0.00 0.00 0.00 2.41
2942 4516 3.968265 ACCCCTCCATCACAAATACAAG 58.032 45.455 0.00 0.00 0.00 3.16
2943 4517 3.333680 ACCCCTCCATCACAAATACAAGT 59.666 43.478 0.00 0.00 0.00 3.16
2944 4518 4.202673 ACCCCTCCATCACAAATACAAGTT 60.203 41.667 0.00 0.00 0.00 2.66
2945 4519 4.399303 CCCCTCCATCACAAATACAAGTTC 59.601 45.833 0.00 0.00 0.00 3.01
2946 4520 5.256474 CCCTCCATCACAAATACAAGTTCT 58.744 41.667 0.00 0.00 0.00 3.01
2947 4521 5.711976 CCCTCCATCACAAATACAAGTTCTT 59.288 40.000 0.00 0.00 0.00 2.52
2948 4522 6.127897 CCCTCCATCACAAATACAAGTTCTTC 60.128 42.308 0.00 0.00 0.00 2.87
2949 4523 6.656693 CCTCCATCACAAATACAAGTTCTTCT 59.343 38.462 0.00 0.00 0.00 2.85
2950 4524 7.824289 CCTCCATCACAAATACAAGTTCTTCTA 59.176 37.037 0.00 0.00 0.00 2.10
2951 4525 9.219603 CTCCATCACAAATACAAGTTCTTCTAA 57.780 33.333 0.00 0.00 0.00 2.10
2952 4526 8.999431 TCCATCACAAATACAAGTTCTTCTAAC 58.001 33.333 0.00 0.00 0.00 2.34
2953 4527 8.783093 CCATCACAAATACAAGTTCTTCTAACA 58.217 33.333 0.00 0.00 0.00 2.41
3017 4591 9.686683 AGTGTATTTATTCACTTATTTCAGCCT 57.313 29.630 0.00 0.00 41.33 4.58
3018 4592 9.722056 GTGTATTTATTCACTTATTTCAGCCTG 57.278 33.333 0.00 0.00 0.00 4.85
3019 4593 9.461312 TGTATTTATTCACTTATTTCAGCCTGT 57.539 29.630 0.00 0.00 0.00 4.00
3020 4594 9.722056 GTATTTATTCACTTATTTCAGCCTGTG 57.278 33.333 0.00 0.00 0.00 3.66
3021 4595 7.759489 TTTATTCACTTATTTCAGCCTGTGT 57.241 32.000 0.00 0.00 0.00 3.72
3022 4596 5.633830 ATTCACTTATTTCAGCCTGTGTG 57.366 39.130 0.00 0.00 0.00 3.82
3023 4597 4.085357 TCACTTATTTCAGCCTGTGTGT 57.915 40.909 0.00 0.00 0.00 3.72
3024 4598 5.222079 TCACTTATTTCAGCCTGTGTGTA 57.778 39.130 0.00 0.00 0.00 2.90
3025 4599 5.237815 TCACTTATTTCAGCCTGTGTGTAG 58.762 41.667 0.00 0.00 0.00 2.74
3026 4600 4.997395 CACTTATTTCAGCCTGTGTGTAGT 59.003 41.667 0.00 0.00 0.00 2.73
3027 4601 5.470098 CACTTATTTCAGCCTGTGTGTAGTT 59.530 40.000 0.00 0.00 0.00 2.24
3028 4602 5.701290 ACTTATTTCAGCCTGTGTGTAGTTC 59.299 40.000 0.00 0.00 0.00 3.01
3029 4603 3.552132 TTTCAGCCTGTGTGTAGTTCA 57.448 42.857 0.00 0.00 0.00 3.18
3030 4604 3.769739 TTCAGCCTGTGTGTAGTTCAT 57.230 42.857 0.00 0.00 0.00 2.57
3031 4605 4.882842 TTCAGCCTGTGTGTAGTTCATA 57.117 40.909 0.00 0.00 0.00 2.15
3032 4606 5.420725 TTCAGCCTGTGTGTAGTTCATAT 57.579 39.130 0.00 0.00 0.00 1.78
3033 4607 5.420725 TCAGCCTGTGTGTAGTTCATATT 57.579 39.130 0.00 0.00 0.00 1.28
3034 4608 5.178061 TCAGCCTGTGTGTAGTTCATATTG 58.822 41.667 0.00 0.00 0.00 1.90
3035 4609 5.046663 TCAGCCTGTGTGTAGTTCATATTGA 60.047 40.000 0.00 0.00 0.00 2.57
3036 4610 5.643348 CAGCCTGTGTGTAGTTCATATTGAA 59.357 40.000 0.00 0.00 33.32 2.69
3037 4611 6.317140 CAGCCTGTGTGTAGTTCATATTGAAT 59.683 38.462 0.00 0.00 38.79 2.57
3038 4612 6.886459 AGCCTGTGTGTAGTTCATATTGAATT 59.114 34.615 0.00 0.00 38.79 2.17
3039 4613 6.968904 GCCTGTGTGTAGTTCATATTGAATTG 59.031 38.462 0.00 0.00 38.79 2.32
3040 4614 7.362056 GCCTGTGTGTAGTTCATATTGAATTGT 60.362 37.037 0.00 0.00 38.79 2.71
3041 4615 8.177663 CCTGTGTGTAGTTCATATTGAATTGTC 58.822 37.037 0.00 0.00 38.79 3.18
3042 4616 8.039603 TGTGTGTAGTTCATATTGAATTGTCC 57.960 34.615 0.00 0.00 38.79 4.02
3043 4617 7.663493 TGTGTGTAGTTCATATTGAATTGTCCA 59.337 33.333 0.00 0.00 38.79 4.02
3044 4618 8.511321 GTGTGTAGTTCATATTGAATTGTCCAA 58.489 33.333 0.00 0.00 38.79 3.53
3045 4619 9.072375 TGTGTAGTTCATATTGAATTGTCCAAA 57.928 29.630 0.00 0.00 38.79 3.28
3046 4620 9.906660 GTGTAGTTCATATTGAATTGTCCAAAA 57.093 29.630 0.00 0.00 38.79 2.44
3047 4621 9.906660 TGTAGTTCATATTGAATTGTCCAAAAC 57.093 29.630 0.00 0.00 38.79 2.43
3048 4622 9.906660 GTAGTTCATATTGAATTGTCCAAAACA 57.093 29.630 0.00 0.00 38.79 2.83
3102 4681 7.568349 AGTTAATTGGATGAGTGAATAGCAGA 58.432 34.615 0.00 0.00 0.00 4.26
3139 4718 3.256631 CAGTAGCTTCCAATTGGTTGCTT 59.743 43.478 33.83 22.62 41.76 3.91
3215 4805 3.376859 TCTTGTTCTGATGCGTTTGTTGT 59.623 39.130 0.00 0.00 0.00 3.32
3406 5066 3.935828 CCTTTGCTCTTCTAACCTGTAGC 59.064 47.826 0.00 0.00 0.00 3.58
3417 5077 3.902881 AACCTGTAGCTCCTGATCAAG 57.097 47.619 0.00 0.00 0.00 3.02
3425 5085 1.743091 GCTCCTGATCAAGCTGGTCTG 60.743 57.143 11.42 0.00 35.60 3.51
3457 5117 9.243637 GATTTCATTGCAAAACACTACTTGTAA 57.756 29.630 1.71 0.00 37.51 2.41
3477 5137 4.856115 AAAACTTGTGGATTTTGTTGCG 57.144 36.364 0.00 0.00 0.00 4.85
3497 5157 6.161855 TGCGGAGATCAGTTGTCTAAATAT 57.838 37.500 0.00 0.00 0.00 1.28
3545 5205 6.442513 AGACTACAAAATATTGCTTCTGCC 57.557 37.500 0.00 0.00 40.34 4.85
3557 5217 2.957680 TGCTTCTGCCATTTTTCAGTCA 59.042 40.909 0.00 0.00 38.71 3.41
3613 5305 2.616960 CGGATGATTTCTGGAACGTCA 58.383 47.619 0.00 0.00 0.00 4.35
3614 5306 2.348666 CGGATGATTTCTGGAACGTCAC 59.651 50.000 0.00 0.00 0.00 3.67
3615 5307 2.678336 GGATGATTTCTGGAACGTCACC 59.322 50.000 5.01 5.01 0.00 4.02
3617 5309 4.382685 GGATGATTTCTGGAACGTCACCTA 60.383 45.833 11.91 0.00 0.00 3.08
3618 5310 4.188247 TGATTTCTGGAACGTCACCTAG 57.812 45.455 11.91 8.33 0.00 3.02
3619 5311 3.830178 TGATTTCTGGAACGTCACCTAGA 59.170 43.478 11.91 10.01 0.00 2.43
3620 5312 3.655276 TTTCTGGAACGTCACCTAGAC 57.345 47.619 11.91 0.00 44.02 2.59
3627 5319 2.960170 GTCACCTAGACGCCACGT 59.040 61.111 0.00 0.00 45.10 4.49
3628 5320 1.443872 GTCACCTAGACGCCACGTG 60.444 63.158 9.08 9.08 41.37 4.49
3629 5321 1.900016 TCACCTAGACGCCACGTGT 60.900 57.895 15.65 0.00 41.37 4.49
3630 5322 1.006571 CACCTAGACGCCACGTGTT 60.007 57.895 15.65 0.00 41.37 3.32
3631 5323 0.599204 CACCTAGACGCCACGTGTTT 60.599 55.000 15.65 0.00 41.37 2.83
3632 5324 0.105408 ACCTAGACGCCACGTGTTTT 59.895 50.000 15.65 0.00 41.37 2.43
3633 5325 0.511221 CCTAGACGCCACGTGTTTTG 59.489 55.000 15.65 3.45 41.37 2.44
3637 5329 2.653766 CGCCACGTGTTTTGGTGC 60.654 61.111 15.65 7.71 37.80 5.01
3659 5351 2.753966 CCATGCACCGCTTCCTTCG 61.754 63.158 0.00 0.00 0.00 3.79
3693 5385 1.419387 CCCTGCCTTATCTCTTGAGGG 59.581 57.143 0.00 0.00 33.01 4.30
3696 5388 0.250081 GCCTTATCTCTTGAGGGCGG 60.250 60.000 0.00 0.00 30.96 6.13
3702 5394 2.282958 TCTTGAGGGCGGTCGTCT 60.283 61.111 3.81 0.00 0.00 4.18
3707 5399 2.439883 AGGGCGGTCGTCTCCTAC 60.440 66.667 0.00 0.00 0.00 3.18
3718 5410 3.949113 GTCGTCTCCTACCTCTCTCATTT 59.051 47.826 0.00 0.00 0.00 2.32
3719 5411 4.399934 GTCGTCTCCTACCTCTCTCATTTT 59.600 45.833 0.00 0.00 0.00 1.82
3742 5434 4.720649 TTTCATCTCTCTACCCAGAACG 57.279 45.455 0.00 0.00 0.00 3.95
3743 5435 2.025155 TCATCTCTCTACCCAGAACGC 58.975 52.381 0.00 0.00 0.00 4.84
3745 5437 1.919240 TCTCTCTACCCAGAACGCAA 58.081 50.000 0.00 0.00 0.00 4.85
3758 5450 5.971202 CCCAGAACGCAACATAACAATATTC 59.029 40.000 0.00 0.00 0.00 1.75
3760 5452 5.971202 CAGAACGCAACATAACAATATTCCC 59.029 40.000 0.00 0.00 0.00 3.97
3767 5459 7.322699 CGCAACATAACAATATTCCCGAAATAC 59.677 37.037 0.00 0.00 32.68 1.89
3777 5469 9.277783 CAATATTCCCGAAATACTTCTCAAGAT 57.722 33.333 0.00 0.00 32.68 2.40
3778 5470 8.839310 ATATTCCCGAAATACTTCTCAAGATG 57.161 34.615 0.00 0.00 32.68 2.90
3781 5473 6.889198 TCCCGAAATACTTCTCAAGATGAAT 58.111 36.000 0.38 0.00 0.00 2.57
3783 5475 6.203723 CCCGAAATACTTCTCAAGATGAATCC 59.796 42.308 0.38 0.00 0.00 3.01
3790 5482 5.299531 ACTTCTCAAGATGAATCCATGCATG 59.700 40.000 20.19 20.19 32.09 4.06
3796 5488 6.097696 TCAAGATGAATCCATGCATGTGATTT 59.902 34.615 28.69 20.42 32.02 2.17
3797 5489 7.285858 TCAAGATGAATCCATGCATGTGATTTA 59.714 33.333 28.69 26.40 32.02 1.40
3859 5551 5.221742 GGGTTAATGGTCCCAAATTTTGACA 60.222 40.000 10.72 4.84 42.95 3.58
3896 5588 9.893305 CTAAAAACGTCACTTTCTTTGGAATAT 57.107 29.630 0.00 0.00 0.00 1.28
3917 5609 2.060326 TCCGCAAGACAAGAGTAACG 57.940 50.000 0.00 0.00 43.02 3.18
3919 5611 2.230508 TCCGCAAGACAAGAGTAACGAT 59.769 45.455 0.00 0.00 43.02 3.73
3924 5616 4.268884 GCAAGACAAGAGTAACGATGATCC 59.731 45.833 0.00 0.00 0.00 3.36
3967 5662 2.027745 CGGGGTAGAGGATCCATGAATG 60.028 54.545 15.82 0.00 33.66 2.67
3985 5680 4.022676 TGAATGGTTGCATAGCAGCATATG 60.023 41.667 8.06 0.00 45.19 1.78
4000 5695 4.083581 GCATATGCTTCGTCAAAGTTGT 57.916 40.909 20.64 0.00 37.31 3.32
4001 5696 5.216566 GCATATGCTTCGTCAAAGTTGTA 57.783 39.130 20.64 0.00 37.31 2.41
4002 5697 5.022021 GCATATGCTTCGTCAAAGTTGTAC 58.978 41.667 20.64 0.00 37.31 2.90
4003 5698 5.390461 GCATATGCTTCGTCAAAGTTGTACA 60.390 40.000 20.64 0.00 37.31 2.90
4004 5699 6.675486 GCATATGCTTCGTCAAAGTTGTACAT 60.675 38.462 20.64 0.00 37.31 2.29
4005 5700 7.465379 GCATATGCTTCGTCAAAGTTGTACATA 60.465 37.037 20.64 0.00 37.31 2.29
4006 5701 5.585500 TGCTTCGTCAAAGTTGTACATAC 57.415 39.130 0.00 0.00 37.31 2.39
4007 5702 4.449743 TGCTTCGTCAAAGTTGTACATACC 59.550 41.667 0.00 0.00 37.31 2.73
4008 5703 4.433805 GCTTCGTCAAAGTTGTACATACCG 60.434 45.833 0.00 0.00 37.31 4.02
4009 5704 4.502171 TCGTCAAAGTTGTACATACCGA 57.498 40.909 0.00 0.30 0.00 4.69
4010 5705 5.063180 TCGTCAAAGTTGTACATACCGAT 57.937 39.130 0.00 0.00 0.00 4.18
4011 5706 4.860352 TCGTCAAAGTTGTACATACCGATG 59.140 41.667 0.00 0.00 39.16 3.84
4012 5707 4.860352 CGTCAAAGTTGTACATACCGATGA 59.140 41.667 0.00 1.28 36.48 2.92
4013 5708 5.518847 CGTCAAAGTTGTACATACCGATGAT 59.481 40.000 0.00 0.00 36.48 2.45
4014 5709 6.035650 CGTCAAAGTTGTACATACCGATGATT 59.964 38.462 0.00 0.00 36.48 2.57
4015 5710 7.221259 CGTCAAAGTTGTACATACCGATGATTA 59.779 37.037 0.00 0.00 36.48 1.75
4016 5711 9.042008 GTCAAAGTTGTACATACCGATGATTAT 57.958 33.333 0.00 0.00 36.48 1.28
4017 5712 9.040939 TCAAAGTTGTACATACCGATGATTATG 57.959 33.333 0.00 0.00 36.48 1.90
4018 5713 8.826710 CAAAGTTGTACATACCGATGATTATGT 58.173 33.333 0.00 0.00 41.01 2.29
4019 5714 8.589335 AAGTTGTACATACCGATGATTATGTC 57.411 34.615 0.00 0.00 39.24 3.06
4020 5715 7.722363 AGTTGTACATACCGATGATTATGTCA 58.278 34.615 0.00 0.00 39.24 3.58
4029 5724 2.049888 TGATTATGTCATTGCGGGCA 57.950 45.000 0.00 0.00 0.00 5.36
4030 5725 2.585330 TGATTATGTCATTGCGGGCAT 58.415 42.857 0.00 0.00 0.00 4.40
4031 5726 2.293955 TGATTATGTCATTGCGGGCATG 59.706 45.455 0.00 0.00 0.00 4.06
4080 5839 7.675962 AGCAACGTATGAATACCAAAAGTAA 57.324 32.000 0.00 0.00 33.70 2.24
4082 5841 8.736244 AGCAACGTATGAATACCAAAAGTAATT 58.264 29.630 0.00 0.00 33.70 1.40
4083 5842 9.991388 GCAACGTATGAATACCAAAAGTAATTA 57.009 29.630 0.00 0.00 33.70 1.40
4095 5854 8.257602 ACCAAAAGTAATTAGGAAATTGGTGT 57.742 30.769 15.07 0.00 45.43 4.16
4096 5855 8.147704 ACCAAAAGTAATTAGGAAATTGGTGTG 58.852 33.333 15.07 0.00 45.43 3.82
4108 5867 0.819259 TTGGTGTGCTTGACAGGAGC 60.819 55.000 0.00 0.00 40.53 4.70
4190 5949 2.434185 GCGATCACAACCCGCTCA 60.434 61.111 0.00 0.00 44.83 4.26
4191 5950 2.740714 GCGATCACAACCCGCTCAC 61.741 63.158 0.00 0.00 44.83 3.51
4194 5953 0.602638 GATCACAACCCGCTCACACA 60.603 55.000 0.00 0.00 0.00 3.72
4196 5955 1.227527 CACAACCCGCTCACACAGA 60.228 57.895 0.00 0.00 0.00 3.41
4197 5956 0.603707 CACAACCCGCTCACACAGAT 60.604 55.000 0.00 0.00 0.00 2.90
4198 5957 0.320771 ACAACCCGCTCACACAGATC 60.321 55.000 0.00 0.00 0.00 2.75
4199 5958 0.320683 CAACCCGCTCACACAGATCA 60.321 55.000 0.00 0.00 0.00 2.92
4200 5959 0.320771 AACCCGCTCACACAGATCAC 60.321 55.000 0.00 0.00 0.00 3.06
4225 5984 3.052082 CCCAGTCACGCTGCAAGG 61.052 66.667 0.00 0.00 43.71 3.61
4257 6016 6.037610 AGAGAATGTTCGTGCCTTATGAATTC 59.962 38.462 0.00 0.00 36.72 2.17
4258 6017 4.900635 ATGTTCGTGCCTTATGAATTCC 57.099 40.909 2.27 0.00 36.72 3.01
4297 6063 5.315118 GTGTAACGTATTTATACACGCCC 57.685 43.478 10.72 0.00 39.78 6.13
4298 6064 5.043248 GTGTAACGTATTTATACACGCCCT 58.957 41.667 10.72 0.00 39.78 5.19
4299 6065 5.173854 GTGTAACGTATTTATACACGCCCTC 59.826 44.000 10.72 0.00 39.78 4.30
4300 6066 3.375782 ACGTATTTATACACGCCCTCC 57.624 47.619 0.00 0.00 41.80 4.30
4301 6067 2.694628 ACGTATTTATACACGCCCTCCA 59.305 45.455 0.00 0.00 41.80 3.86
4302 6068 3.132646 ACGTATTTATACACGCCCTCCAA 59.867 43.478 0.00 0.00 41.80 3.53
4303 6069 4.202284 ACGTATTTATACACGCCCTCCAAT 60.202 41.667 0.00 0.00 41.80 3.16
4310 6076 0.243636 CACGCCCTCCAATTCCAAAC 59.756 55.000 0.00 0.00 0.00 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.823220 AAGGCACTCTTATAAAAATACATGGT 57.177 30.769 0.00 0.00 38.49 3.55
71 72 1.742268 GAAGAAGCCAAGTCCATGAGC 59.258 52.381 0.00 0.00 0.00 4.26
73 74 1.339055 CGGAAGAAGCCAAGTCCATGA 60.339 52.381 0.00 0.00 0.00 3.07
76 77 0.762418 TTCGGAAGAAGCCAAGTCCA 59.238 50.000 0.00 0.00 46.92 4.02
77 78 3.625745 TTCGGAAGAAGCCAAGTCC 57.374 52.632 0.00 0.00 46.92 3.85
106 107 3.119673 TGTGTGTGTTAGTGTTGGCTTTG 60.120 43.478 0.00 0.00 0.00 2.77
111 112 2.872245 CCTCTGTGTGTGTTAGTGTTGG 59.128 50.000 0.00 0.00 0.00 3.77
129 134 6.483385 TCGATCTTATACGACTTGATCCTC 57.517 41.667 0.00 0.00 33.62 3.71
141 146 6.523893 GTCTAGGCATCGTTTCGATCTTATAC 59.476 42.308 1.58 0.19 45.19 1.47
244 250 1.343821 GGAATCGCGTGTGCTTACG 59.656 57.895 5.77 8.61 46.28 3.18
268 274 5.999205 TTCCAATTTGCATGGTTATGTCT 57.001 34.783 4.77 0.00 39.09 3.41
269 275 5.351189 GGTTTCCAATTTGCATGGTTATGTC 59.649 40.000 4.77 0.00 39.09 3.06
270 276 5.012975 AGGTTTCCAATTTGCATGGTTATGT 59.987 36.000 4.77 0.00 39.09 2.29
271 277 5.490159 AGGTTTCCAATTTGCATGGTTATG 58.510 37.500 4.77 0.00 39.09 1.90
272 278 5.760484 AGGTTTCCAATTTGCATGGTTAT 57.240 34.783 4.77 0.00 39.09 1.89
273 279 5.163258 ACAAGGTTTCCAATTTGCATGGTTA 60.163 36.000 4.77 0.00 39.09 2.85
274 280 4.136051 CAAGGTTTCCAATTTGCATGGTT 58.864 39.130 4.77 0.00 39.09 3.67
275 281 3.136260 ACAAGGTTTCCAATTTGCATGGT 59.864 39.130 4.77 0.00 39.09 3.55
276 282 3.499157 CACAAGGTTTCCAATTTGCATGG 59.501 43.478 0.00 0.00 39.41 3.66
277 283 3.058777 GCACAAGGTTTCCAATTTGCATG 60.059 43.478 0.00 0.00 0.00 4.06
278 284 3.140623 GCACAAGGTTTCCAATTTGCAT 58.859 40.909 0.00 0.00 0.00 3.96
279 285 2.093288 TGCACAAGGTTTCCAATTTGCA 60.093 40.909 0.00 0.00 36.42 4.08
280 286 2.287644 GTGCACAAGGTTTCCAATTTGC 59.712 45.455 13.17 0.00 0.00 3.68
281 287 3.529533 TGTGCACAAGGTTTCCAATTTG 58.470 40.909 19.28 0.00 0.00 2.32
282 288 3.902881 TGTGCACAAGGTTTCCAATTT 57.097 38.095 19.28 0.00 0.00 1.82
283 289 3.902881 TTGTGCACAAGGTTTCCAATT 57.097 38.095 27.96 0.00 0.00 2.32
284 290 4.343526 TGTATTGTGCACAAGGTTTCCAAT 59.656 37.500 33.44 18.01 39.47 3.16
285 291 3.701542 TGTATTGTGCACAAGGTTTCCAA 59.298 39.130 33.44 11.32 39.47 3.53
286 292 3.067461 GTGTATTGTGCACAAGGTTTCCA 59.933 43.478 33.44 20.31 39.47 3.53
287 293 3.067461 TGTGTATTGTGCACAAGGTTTCC 59.933 43.478 33.44 19.85 42.96 3.13
288 294 4.300189 TGTGTATTGTGCACAAGGTTTC 57.700 40.909 33.44 22.19 42.96 2.78
297 303 1.879380 GGAGTGCTTGTGTATTGTGCA 59.121 47.619 0.00 0.00 0.00 4.57
298 304 1.879380 TGGAGTGCTTGTGTATTGTGC 59.121 47.619 0.00 0.00 0.00 4.57
299 305 3.187227 GTCTGGAGTGCTTGTGTATTGTG 59.813 47.826 0.00 0.00 0.00 3.33
300 306 3.403038 GTCTGGAGTGCTTGTGTATTGT 58.597 45.455 0.00 0.00 0.00 2.71
301 307 2.413112 CGTCTGGAGTGCTTGTGTATTG 59.587 50.000 0.00 0.00 0.00 1.90
302 308 2.612972 CCGTCTGGAGTGCTTGTGTATT 60.613 50.000 0.00 0.00 37.49 1.89
303 309 1.066858 CCGTCTGGAGTGCTTGTGTAT 60.067 52.381 0.00 0.00 37.49 2.29
304 310 0.317160 CCGTCTGGAGTGCTTGTGTA 59.683 55.000 0.00 0.00 37.49 2.90
305 311 1.069765 CCGTCTGGAGTGCTTGTGT 59.930 57.895 0.00 0.00 37.49 3.72
306 312 0.317160 TACCGTCTGGAGTGCTTGTG 59.683 55.000 0.00 0.00 39.21 3.33
307 313 1.000955 CTTACCGTCTGGAGTGCTTGT 59.999 52.381 0.00 0.00 39.21 3.16
308 314 1.272490 TCTTACCGTCTGGAGTGCTTG 59.728 52.381 0.00 0.00 39.21 4.01
309 315 1.546476 CTCTTACCGTCTGGAGTGCTT 59.454 52.381 0.00 0.00 39.21 3.91
310 316 1.178276 CTCTTACCGTCTGGAGTGCT 58.822 55.000 0.00 0.00 39.21 4.40
311 317 0.458716 GCTCTTACCGTCTGGAGTGC 60.459 60.000 0.00 0.00 39.21 4.40
312 318 0.173708 GGCTCTTACCGTCTGGAGTG 59.826 60.000 0.00 0.00 39.21 3.51
313 319 2.581074 GGCTCTTACCGTCTGGAGT 58.419 57.895 0.00 0.00 39.21 3.85
330 336 0.738389 GGTTATGTCCATGCCAACGG 59.262 55.000 0.00 0.00 0.00 4.44
331 337 1.132262 GTGGTTATGTCCATGCCAACG 59.868 52.381 6.88 0.00 39.81 4.10
332 338 1.132262 CGTGGTTATGTCCATGCCAAC 59.868 52.381 6.88 0.00 39.81 3.77
333 339 1.458398 CGTGGTTATGTCCATGCCAA 58.542 50.000 6.88 0.00 39.81 4.52
334 340 3.167189 CGTGGTTATGTCCATGCCA 57.833 52.632 0.00 2.57 39.81 4.92
345 351 2.801679 CGGTTTCTAGTTTGCGTGGTTA 59.198 45.455 0.00 0.00 0.00 2.85
402 408 1.285641 GTTGTGTCCATGCCAACGG 59.714 57.895 0.00 0.00 30.35 4.44
404 410 0.031994 GTGGTTGTGTCCATGCCAAC 59.968 55.000 7.04 7.04 39.81 3.77
405 411 1.451337 CGTGGTTGTGTCCATGCCAA 61.451 55.000 0.00 0.00 39.81 4.52
406 412 1.896183 CGTGGTTGTGTCCATGCCA 60.896 57.895 0.00 0.00 39.81 4.92
407 413 2.953821 CGTGGTTGTGTCCATGCC 59.046 61.111 0.00 0.00 39.81 4.40
409 415 0.383590 TTTGCGTGGTTGTGTCCATG 59.616 50.000 0.00 0.00 44.65 3.66
410 416 0.383949 GTTTGCGTGGTTGTGTCCAT 59.616 50.000 0.00 0.00 39.81 3.41
411 417 0.678366 AGTTTGCGTGGTTGTGTCCA 60.678 50.000 0.00 0.00 34.85 4.02
412 418 0.248458 CAGTTTGCGTGGTTGTGTCC 60.248 55.000 0.00 0.00 0.00 4.02
413 419 0.248458 CCAGTTTGCGTGGTTGTGTC 60.248 55.000 0.00 0.00 0.00 3.67
414 420 0.678366 TCCAGTTTGCGTGGTTGTGT 60.678 50.000 0.00 0.00 36.37 3.72
415 421 0.453793 TTCCAGTTTGCGTGGTTGTG 59.546 50.000 0.00 0.00 36.37 3.33
416 422 1.135228 GTTTCCAGTTTGCGTGGTTGT 60.135 47.619 0.00 0.00 36.37 3.32
417 423 1.555477 GTTTCCAGTTTGCGTGGTTG 58.445 50.000 0.00 0.00 36.37 3.77
418 424 0.458260 GGTTTCCAGTTTGCGTGGTT 59.542 50.000 0.00 0.00 36.37 3.67
419 425 1.720694 CGGTTTCCAGTTTGCGTGGT 61.721 55.000 0.00 0.00 36.37 4.16
420 426 1.008995 CGGTTTCCAGTTTGCGTGG 60.009 57.895 0.00 0.00 36.28 4.94
421 427 0.591236 CACGGTTTCCAGTTTGCGTG 60.591 55.000 0.00 0.00 0.00 5.34
422 428 1.027792 ACACGGTTTCCAGTTTGCGT 61.028 50.000 0.00 0.00 0.00 5.24
423 429 0.591236 CACACGGTTTCCAGTTTGCG 60.591 55.000 0.00 0.00 0.00 4.85
424 430 0.869880 GCACACGGTTTCCAGTTTGC 60.870 55.000 0.00 6.31 36.98 3.68
425 431 0.453793 TGCACACGGTTTCCAGTTTG 59.546 50.000 0.00 0.00 0.00 2.93
426 432 0.454196 GTGCACACGGTTTCCAGTTT 59.546 50.000 13.17 0.00 0.00 2.66
427 433 0.678366 TGTGCACACGGTTTCCAGTT 60.678 50.000 17.42 0.00 0.00 3.16
428 434 0.678366 TTGTGCACACGGTTTCCAGT 60.678 50.000 21.56 0.00 0.00 4.00
429 435 0.667993 ATTGTGCACACGGTTTCCAG 59.332 50.000 21.56 0.00 0.00 3.86
430 436 1.604755 GTATTGTGCACACGGTTTCCA 59.395 47.619 21.56 1.85 0.00 3.53
431 437 1.604755 TGTATTGTGCACACGGTTTCC 59.395 47.619 21.56 4.05 0.00 3.13
432 438 2.646250 GTGTATTGTGCACACGGTTTC 58.354 47.619 21.56 7.76 37.18 2.78
433 439 2.766970 GTGTATTGTGCACACGGTTT 57.233 45.000 21.56 4.89 37.18 3.27
438 444 2.772568 TGCTTGTGTATTGTGCACAC 57.227 45.000 21.56 9.20 45.20 3.82
441 447 4.384940 TCTTAGTGCTTGTGTATTGTGCA 58.615 39.130 0.00 0.00 0.00 4.57
442 448 4.670221 GCTCTTAGTGCTTGTGTATTGTGC 60.670 45.833 0.00 0.00 0.00 4.57
443 449 4.142816 GGCTCTTAGTGCTTGTGTATTGTG 60.143 45.833 6.24 0.00 0.00 3.33
444 450 4.003648 GGCTCTTAGTGCTTGTGTATTGT 58.996 43.478 6.24 0.00 0.00 2.71
445 451 3.062639 CGGCTCTTAGTGCTTGTGTATTG 59.937 47.826 6.24 0.00 0.00 1.90
446 452 3.262420 CGGCTCTTAGTGCTTGTGTATT 58.738 45.455 6.24 0.00 0.00 1.89
447 453 2.233922 ACGGCTCTTAGTGCTTGTGTAT 59.766 45.455 6.24 0.00 0.00 2.29
448 454 1.616865 ACGGCTCTTAGTGCTTGTGTA 59.383 47.619 6.24 0.00 0.00 2.90
449 455 0.393077 ACGGCTCTTAGTGCTTGTGT 59.607 50.000 6.24 0.00 0.00 3.72
450 456 1.461127 GAACGGCTCTTAGTGCTTGTG 59.539 52.381 6.24 0.00 0.00 3.33
451 457 1.797025 GAACGGCTCTTAGTGCTTGT 58.203 50.000 6.24 3.08 0.00 3.16
452 458 0.716108 CGAACGGCTCTTAGTGCTTG 59.284 55.000 6.24 2.49 0.00 4.01
453 459 0.317479 ACGAACGGCTCTTAGTGCTT 59.683 50.000 6.24 0.00 0.00 3.91
454 460 0.388649 CACGAACGGCTCTTAGTGCT 60.389 55.000 6.24 0.00 0.00 4.40
455 461 1.352156 CCACGAACGGCTCTTAGTGC 61.352 60.000 0.00 0.00 0.00 4.40
456 462 0.242825 TCCACGAACGGCTCTTAGTG 59.757 55.000 0.00 0.00 0.00 2.74
457 463 0.526662 CTCCACGAACGGCTCTTAGT 59.473 55.000 0.00 0.00 0.00 2.24
458 464 0.802607 GCTCCACGAACGGCTCTTAG 60.803 60.000 0.00 0.00 0.00 2.18
459 465 1.214589 GCTCCACGAACGGCTCTTA 59.785 57.895 0.00 0.00 0.00 2.10
460 466 2.048127 GCTCCACGAACGGCTCTT 60.048 61.111 0.00 0.00 0.00 2.85
461 467 4.070552 GGCTCCACGAACGGCTCT 62.071 66.667 0.00 0.00 0.00 4.09
462 468 3.876589 TTGGCTCCACGAACGGCTC 62.877 63.158 0.00 0.00 0.00 4.70
463 469 2.951475 TTTTGGCTCCACGAACGGCT 62.951 55.000 0.00 0.00 0.00 5.52
472 478 1.265635 CGACGAATGTTTTTGGCTCCA 59.734 47.619 0.00 0.00 0.00 3.86
501 507 0.167470 TGTCGCTTCTCGTCCGTTAG 59.833 55.000 0.00 0.00 39.67 2.34
508 514 0.243095 GGGTAAGTGTCGCTTCTCGT 59.757 55.000 0.90 0.00 38.57 4.18
538 544 9.366216 CCTTGCCTATACTTTTTGGAAAAATAC 57.634 33.333 0.00 0.00 37.27 1.89
539 545 9.315363 TCCTTGCCTATACTTTTTGGAAAAATA 57.685 29.630 0.00 0.00 37.27 1.40
553 559 1.413077 AGCTTCGGTCCTTGCCTATAC 59.587 52.381 0.00 0.00 0.00 1.47
564 570 1.507141 CCCACAACACAGCTTCGGTC 61.507 60.000 0.00 0.00 0.00 4.79
567 573 1.101049 AACCCCACAACACAGCTTCG 61.101 55.000 0.00 0.00 0.00 3.79
584 590 1.081175 GGAAAGCAGCGAAGGCAAC 60.081 57.895 0.00 0.00 43.41 4.17
643 666 6.240894 TCATGAAAGACCAGCAGTAAGAAAT 58.759 36.000 0.00 0.00 0.00 2.17
705 737 5.028549 TCCCTCTTGCTCAGAATTACATC 57.971 43.478 0.00 0.00 0.00 3.06
784 1994 1.000283 GTGTGTGGAGTCCAGAGACAG 60.000 57.143 26.34 0.00 46.15 3.51
793 2003 4.201832 CGTACAGAGATAGTGTGTGGAGTC 60.202 50.000 0.00 0.00 33.81 3.36
858 2070 1.623811 TCTTAGCTCCTTTTGCTCGGT 59.376 47.619 0.00 0.00 41.46 4.69
913 2125 2.354510 TGCAACAGACACAAGTAGCAAC 59.645 45.455 0.00 0.00 0.00 4.17
950 2162 2.281070 CAGGCCGTGCTCAACAGT 60.281 61.111 0.00 0.00 0.00 3.55
952 2164 2.280797 GTCAGGCCGTGCTCAACA 60.281 61.111 0.00 0.00 0.00 3.33
954 2166 2.031012 CTGTCAGGCCGTGCTCAA 59.969 61.111 0.00 0.00 0.00 3.02
1206 2425 8.117813 TCTGAAGTTTCAAGGTAAAAACAGTT 57.882 30.769 0.00 0.00 37.74 3.16
1208 2427 8.980143 TTTCTGAAGTTTCAAGGTAAAAACAG 57.020 30.769 0.00 0.00 37.74 3.16
1209 2428 9.198837 GTTTTCTGAAGTTTCAAGGTAAAAACA 57.801 29.630 15.23 0.00 37.74 2.83
1210 2429 9.419297 AGTTTTCTGAAGTTTCAAGGTAAAAAC 57.581 29.630 13.85 13.85 36.64 2.43
1211 2430 9.990360 AAGTTTTCTGAAGTTTCAAGGTAAAAA 57.010 25.926 0.00 0.00 36.64 1.94
1239 2458 7.880195 GCTAAATTACACACATCTATCTCCCAT 59.120 37.037 0.00 0.00 0.00 4.00
1254 2475 7.437267 ACCACACGATGTATAGCTAAATTACAC 59.563 37.037 7.64 3.07 0.00 2.90
1261 2482 5.064198 GCAAAACCACACGATGTATAGCTAA 59.936 40.000 0.00 0.00 0.00 3.09
1267 2488 4.576216 TTTGCAAAACCACACGATGTAT 57.424 36.364 10.02 0.00 0.00 2.29
1482 2756 0.823356 TGGCAGCTGAAAGTTCACCC 60.823 55.000 20.43 6.06 35.30 4.61
1611 2885 9.323985 CTTCATTGTTAGGATAGAAGAGGAAAG 57.676 37.037 0.00 0.00 35.67 2.62
1735 3012 8.394121 CCAGCTATGTAGAACTCTTTCATTTTC 58.606 37.037 0.00 0.00 33.72 2.29
1784 3061 1.349026 TCTAGCCAGCTATGAATGGGC 59.651 52.381 0.00 0.80 44.92 5.36
1786 3063 5.674052 AGTATCTAGCCAGCTATGAATGG 57.326 43.478 0.00 0.00 39.73 3.16
1787 3064 7.403312 AGTAGTATCTAGCCAGCTATGAATG 57.597 40.000 0.00 0.00 0.00 2.67
1819 3096 7.032377 TCATGAGCACAGTACAATCTAGTAG 57.968 40.000 0.00 0.00 0.00 2.57
1820 3097 7.503902 AGATCATGAGCACAGTACAATCTAGTA 59.496 37.037 14.38 0.00 0.00 1.82
1824 3101 5.128335 TCAGATCATGAGCACAGTACAATCT 59.872 40.000 14.38 0.00 32.77 2.40
1826 3103 5.105023 AGTCAGATCATGAGCACAGTACAAT 60.105 40.000 14.38 0.00 39.07 2.71
1827 3104 4.221482 AGTCAGATCATGAGCACAGTACAA 59.779 41.667 14.38 0.00 39.07 2.41
1828 3105 3.766051 AGTCAGATCATGAGCACAGTACA 59.234 43.478 14.38 0.00 39.07 2.90
2043 3409 9.841295 TCTGTACTCCATTTTGTTTAGTTAGTT 57.159 29.630 0.00 0.00 0.00 2.24
2061 3437 0.591741 CGCGTTCCCGATCTGTACTC 60.592 60.000 0.00 0.00 35.63 2.59
2065 3474 1.138247 GTACGCGTTCCCGATCTGT 59.862 57.895 20.78 0.00 35.63 3.41
2311 3729 1.872679 GATGTTCGCCGAGGACGAC 60.873 63.158 7.86 0.00 39.67 4.34
2314 3732 2.582498 CCGATGTTCGCCGAGGAC 60.582 66.667 0.00 0.00 38.82 3.85
2332 3756 3.869473 TACACGGCCGTTGGTCTGC 62.869 63.158 32.11 0.00 0.00 4.26
2401 3825 3.083349 CATGCAGACCGAGGGGGA 61.083 66.667 0.00 0.00 39.97 4.81
2415 3839 1.070376 CAGAACTCACACGCACACATG 60.070 52.381 0.00 0.00 0.00 3.21
2416 3840 1.202521 TCAGAACTCACACGCACACAT 60.203 47.619 0.00 0.00 0.00 3.21
2417 3841 0.174617 TCAGAACTCACACGCACACA 59.825 50.000 0.00 0.00 0.00 3.72
2418 3842 1.457303 GATCAGAACTCACACGCACAC 59.543 52.381 0.00 0.00 0.00 3.82
2419 3843 1.783284 GATCAGAACTCACACGCACA 58.217 50.000 0.00 0.00 0.00 4.57
2420 3844 0.710567 CGATCAGAACTCACACGCAC 59.289 55.000 0.00 0.00 0.00 5.34
2421 3845 0.596082 TCGATCAGAACTCACACGCA 59.404 50.000 0.00 0.00 0.00 5.24
2422 3846 1.263776 CTCGATCAGAACTCACACGC 58.736 55.000 0.00 0.00 0.00 5.34
2423 3847 1.263776 GCTCGATCAGAACTCACACG 58.736 55.000 0.00 0.00 0.00 4.49
2424 3848 2.257894 CTGCTCGATCAGAACTCACAC 58.742 52.381 10.78 0.00 36.19 3.82
2425 3849 1.889170 ACTGCTCGATCAGAACTCACA 59.111 47.619 22.31 0.00 37.51 3.58
2426 3850 2.257894 CACTGCTCGATCAGAACTCAC 58.742 52.381 22.31 0.00 37.51 3.51
2427 3851 1.889170 ACACTGCTCGATCAGAACTCA 59.111 47.619 22.31 0.00 37.51 3.41
2428 3852 2.645730 ACACTGCTCGATCAGAACTC 57.354 50.000 22.31 0.00 37.51 3.01
2429 3853 4.727507 ATTACACTGCTCGATCAGAACT 57.272 40.909 22.31 6.77 37.51 3.01
2430 3854 4.864806 TCAATTACACTGCTCGATCAGAAC 59.135 41.667 22.31 0.00 37.51 3.01
2431 3855 5.072040 TCAATTACACTGCTCGATCAGAA 57.928 39.130 22.31 7.25 37.51 3.02
2441 3865 7.008992 GCATGAAAGAAGAATCAATTACACTGC 59.991 37.037 0.00 0.00 0.00 4.40
2456 3884 7.010738 ACTGTTCATTTTTGTGCATGAAAGAAG 59.989 33.333 0.00 2.42 40.32 2.85
2593 4027 1.140375 GAACGTAGGGGTACGGCAG 59.860 63.158 9.55 0.00 46.68 4.85
2621 4055 1.996191 CAAACTCAGCTAGGCGAACTC 59.004 52.381 0.00 0.00 0.00 3.01
2626 4060 0.445436 CAAGCAAACTCAGCTAGGCG 59.555 55.000 0.00 0.00 42.53 5.52
2627 4061 0.169894 GCAAGCAAACTCAGCTAGGC 59.830 55.000 0.00 0.00 42.53 3.93
2646 4085 6.521151 AAAGAAACATAATTCTGAGCCCAG 57.479 37.500 0.00 0.00 39.54 4.45
2688 4148 4.950050 AGAAACACCACACAAACAAAACA 58.050 34.783 0.00 0.00 0.00 2.83
2695 4155 4.241681 GCTGAAAAGAAACACCACACAAA 58.758 39.130 0.00 0.00 0.00 2.83
2924 4498 6.656693 AGAAGAACTTGTATTTGTGATGGAGG 59.343 38.462 0.00 0.00 0.00 4.30
2927 4501 8.783093 TGTTAGAAGAACTTGTATTTGTGATGG 58.217 33.333 0.00 0.00 0.00 3.51
2969 4543 9.628500 ACACTACTCTGTGTCTATATACATTCA 57.372 33.333 0.00 0.00 46.90 2.57
2980 4554 9.026121 AGTGAATAAATACACTACTCTGTGTCT 57.974 33.333 3.46 0.00 46.90 3.41
2981 4555 9.640963 AAGTGAATAAATACACTACTCTGTGTC 57.359 33.333 3.46 0.00 46.90 3.67
2992 4566 9.722056 CAGGCTGAAATAAGTGAATAAATACAC 57.278 33.333 9.42 0.00 37.30 2.90
2993 4567 9.461312 ACAGGCTGAAATAAGTGAATAAATACA 57.539 29.630 23.66 0.00 0.00 2.29
2994 4568 9.722056 CACAGGCTGAAATAAGTGAATAAATAC 57.278 33.333 23.66 0.00 0.00 1.89
2995 4569 9.461312 ACACAGGCTGAAATAAGTGAATAAATA 57.539 29.630 23.66 0.00 0.00 1.40
2996 4570 8.246180 CACACAGGCTGAAATAAGTGAATAAAT 58.754 33.333 23.66 0.00 0.00 1.40
2997 4571 7.230510 ACACACAGGCTGAAATAAGTGAATAAA 59.769 33.333 23.66 0.00 0.00 1.40
2998 4572 6.714810 ACACACAGGCTGAAATAAGTGAATAA 59.285 34.615 23.66 0.00 0.00 1.40
2999 4573 6.237901 ACACACAGGCTGAAATAAGTGAATA 58.762 36.000 23.66 0.00 0.00 1.75
3000 4574 5.072741 ACACACAGGCTGAAATAAGTGAAT 58.927 37.500 23.66 2.64 0.00 2.57
3001 4575 4.460263 ACACACAGGCTGAAATAAGTGAA 58.540 39.130 23.66 0.00 0.00 3.18
3002 4576 4.085357 ACACACAGGCTGAAATAAGTGA 57.915 40.909 23.66 0.00 0.00 3.41
3003 4577 4.997395 ACTACACACAGGCTGAAATAAGTG 59.003 41.667 23.66 18.99 0.00 3.16
3004 4578 5.228945 ACTACACACAGGCTGAAATAAGT 57.771 39.130 23.66 14.98 0.00 2.24
3005 4579 5.700832 TGAACTACACACAGGCTGAAATAAG 59.299 40.000 23.66 14.36 0.00 1.73
3006 4580 5.616270 TGAACTACACACAGGCTGAAATAA 58.384 37.500 23.66 2.48 0.00 1.40
3007 4581 5.222079 TGAACTACACACAGGCTGAAATA 57.778 39.130 23.66 6.91 0.00 1.40
3008 4582 4.085357 TGAACTACACACAGGCTGAAAT 57.915 40.909 23.66 6.04 0.00 2.17
3009 4583 3.552132 TGAACTACACACAGGCTGAAA 57.448 42.857 23.66 0.24 0.00 2.69
3010 4584 3.769739 ATGAACTACACACAGGCTGAA 57.230 42.857 23.66 0.00 0.00 3.02
3011 4585 5.046663 TCAATATGAACTACACACAGGCTGA 60.047 40.000 23.66 0.00 0.00 4.26
3012 4586 5.178061 TCAATATGAACTACACACAGGCTG 58.822 41.667 14.16 14.16 0.00 4.85
3013 4587 5.420725 TCAATATGAACTACACACAGGCT 57.579 39.130 0.00 0.00 0.00 4.58
3014 4588 6.683974 ATTCAATATGAACTACACACAGGC 57.316 37.500 0.00 0.00 39.45 4.85
3015 4589 8.044060 ACAATTCAATATGAACTACACACAGG 57.956 34.615 0.00 0.00 39.45 4.00
3016 4590 8.177663 GGACAATTCAATATGAACTACACACAG 58.822 37.037 0.00 0.00 39.45 3.66
3017 4591 7.663493 TGGACAATTCAATATGAACTACACACA 59.337 33.333 0.00 0.00 39.45 3.72
3018 4592 8.039603 TGGACAATTCAATATGAACTACACAC 57.960 34.615 0.00 0.00 39.45 3.82
3019 4593 8.628630 TTGGACAATTCAATATGAACTACACA 57.371 30.769 0.00 0.00 39.45 3.72
3020 4594 9.906660 TTTTGGACAATTCAATATGAACTACAC 57.093 29.630 0.00 0.00 39.45 2.90
3021 4595 9.906660 GTTTTGGACAATTCAATATGAACTACA 57.093 29.630 0.00 0.00 39.45 2.74
3022 4596 9.906660 TGTTTTGGACAATTCAATATGAACTAC 57.093 29.630 0.00 0.00 34.45 2.73
3059 4633 9.252962 CAATTAACTAATACTCCGTCCGTTTAT 57.747 33.333 0.00 0.00 0.00 1.40
3060 4634 7.706179 CCAATTAACTAATACTCCGTCCGTTTA 59.294 37.037 0.00 0.00 0.00 2.01
3061 4635 6.536224 CCAATTAACTAATACTCCGTCCGTTT 59.464 38.462 0.00 0.00 0.00 3.60
3062 4636 6.044682 CCAATTAACTAATACTCCGTCCGTT 58.955 40.000 0.00 0.00 0.00 4.44
3063 4637 5.360714 TCCAATTAACTAATACTCCGTCCGT 59.639 40.000 0.00 0.00 0.00 4.69
3064 4638 5.835257 TCCAATTAACTAATACTCCGTCCG 58.165 41.667 0.00 0.00 0.00 4.79
3065 4639 7.439381 TCATCCAATTAACTAATACTCCGTCC 58.561 38.462 0.00 0.00 0.00 4.79
3066 4640 8.142551 ACTCATCCAATTAACTAATACTCCGTC 58.857 37.037 0.00 0.00 0.00 4.79
3067 4641 7.926555 CACTCATCCAATTAACTAATACTCCGT 59.073 37.037 0.00 0.00 0.00 4.69
3068 4642 8.141909 TCACTCATCCAATTAACTAATACTCCG 58.858 37.037 0.00 0.00 0.00 4.63
3069 4643 9.832445 TTCACTCATCCAATTAACTAATACTCC 57.168 33.333 0.00 0.00 0.00 3.85
3078 4652 7.792374 TCTGCTATTCACTCATCCAATTAAC 57.208 36.000 0.00 0.00 0.00 2.01
3089 4663 4.517285 TGGGATTGTTCTGCTATTCACTC 58.483 43.478 0.00 0.00 0.00 3.51
3091 4665 4.024556 CGATGGGATTGTTCTGCTATTCAC 60.025 45.833 0.00 0.00 0.00 3.18
3102 4681 2.420129 GCTACTGGTCGATGGGATTGTT 60.420 50.000 0.00 0.00 0.00 2.83
3162 4741 3.482472 CGATGTAACGTGTGAGATAGTGC 59.518 47.826 0.00 0.00 0.00 4.40
3215 4805 0.187117 TCCATCCACCAACCTGCAAA 59.813 50.000 0.00 0.00 0.00 3.68
3406 5066 1.134461 CCAGACCAGCTTGATCAGGAG 60.134 57.143 9.36 0.00 0.00 3.69
3417 5077 1.064463 TGAAATCCATCCCAGACCAGC 60.064 52.381 0.00 0.00 0.00 4.85
3425 5085 4.392754 GTGTTTTGCAATGAAATCCATCCC 59.607 41.667 0.00 0.00 33.53 3.85
3457 5117 3.118956 TCCGCAACAAAATCCACAAGTTT 60.119 39.130 0.00 0.00 0.00 2.66
3497 5157 9.961265 CTATTTAGGTATGTGACGTAGAAATCA 57.039 33.333 0.00 0.00 30.37 2.57
3536 5196 2.957680 TGACTGAAAAATGGCAGAAGCA 59.042 40.909 0.00 0.00 44.61 3.91
3537 5197 3.311966 GTGACTGAAAAATGGCAGAAGC 58.688 45.455 0.00 0.00 41.10 3.86
3557 5217 8.725405 AACGTTTTCCAAATAAATTTTCAGGT 57.275 26.923 0.00 0.00 0.00 4.00
3610 5302 1.443872 CACGTGGCGTCTAGGTGAC 60.444 63.158 7.95 0.00 38.32 3.67
3613 5305 0.105408 AAAACACGTGGCGTCTAGGT 59.895 50.000 21.57 0.00 38.32 3.08
3614 5306 0.511221 CAAAACACGTGGCGTCTAGG 59.489 55.000 21.57 0.00 38.32 3.02
3615 5307 0.511221 CCAAAACACGTGGCGTCTAG 59.489 55.000 21.57 2.71 38.32 2.43
3617 5309 1.450669 ACCAAAACACGTGGCGTCT 60.451 52.632 21.57 0.00 38.32 4.18
3618 5310 1.298041 CACCAAAACACGTGGCGTC 60.298 57.895 21.57 0.00 38.32 5.19
3619 5311 2.795297 CACCAAAACACGTGGCGT 59.205 55.556 21.57 5.00 42.36 5.68
3620 5312 2.653766 GCACCAAAACACGTGGCG 60.654 61.111 21.57 4.66 40.02 5.69
3621 5313 2.653766 CGCACCAAAACACGTGGC 60.654 61.111 21.57 10.49 40.02 5.01
3622 5314 2.025441 CCGCACCAAAACACGTGG 59.975 61.111 21.57 3.65 42.28 4.94
3623 5315 1.298041 GTCCGCACCAAAACACGTG 60.298 57.895 15.48 15.48 0.00 4.49
3624 5316 2.474612 GGTCCGCACCAAAACACGT 61.475 57.895 0.00 0.00 43.17 4.49
3625 5317 2.330041 GGTCCGCACCAAAACACG 59.670 61.111 0.00 0.00 43.17 4.49
3659 5351 3.003763 AGGGGAACGAGTGCCTCC 61.004 66.667 0.00 0.00 37.99 4.30
3663 5355 2.180159 TAAGGCAGGGGAACGAGTGC 62.180 60.000 0.00 0.00 35.07 4.40
3672 5364 1.419387 CCTCAAGAGATAAGGCAGGGG 59.581 57.143 0.00 0.00 0.00 4.79
3673 5365 1.419387 CCCTCAAGAGATAAGGCAGGG 59.581 57.143 0.00 0.00 33.36 4.45
3696 5388 2.695127 TGAGAGAGGTAGGAGACGAC 57.305 55.000 0.00 0.00 34.90 4.34
3719 5411 5.479306 CGTTCTGGGTAGAGAGATGAAAAA 58.521 41.667 0.00 0.00 33.70 1.94
3723 5415 2.025155 GCGTTCTGGGTAGAGAGATGA 58.975 52.381 0.00 0.00 33.70 2.92
3725 5417 2.145397 TGCGTTCTGGGTAGAGAGAT 57.855 50.000 0.00 0.00 33.70 2.75
3733 5425 2.264005 TGTTATGTTGCGTTCTGGGT 57.736 45.000 0.00 0.00 0.00 4.51
3741 5433 4.804608 TCGGGAATATTGTTATGTTGCG 57.195 40.909 0.00 0.00 0.00 4.85
3742 5434 8.349983 AGTATTTCGGGAATATTGTTATGTTGC 58.650 33.333 0.00 0.00 33.03 4.17
3745 5437 9.847224 AGAAGTATTTCGGGAATATTGTTATGT 57.153 29.630 0.00 0.00 38.38 2.29
3758 5450 6.203723 GGATTCATCTTGAGAAGTATTTCGGG 59.796 42.308 0.00 0.00 38.38 5.14
3760 5452 7.776933 TGGATTCATCTTGAGAAGTATTTCG 57.223 36.000 0.00 0.00 38.38 3.46
3767 5459 5.299531 ACATGCATGGATTCATCTTGAGAAG 59.700 40.000 29.41 0.00 0.00 2.85
3846 5538 5.358922 ACATGTCTTGTGTCAAAATTTGGG 58.641 37.500 5.83 0.00 37.11 4.12
3859 5551 5.815740 AGTGACGTTTTTAGACATGTCTTGT 59.184 36.000 32.14 19.72 42.79 3.16
3896 5588 2.798283 CGTTACTCTTGTCTTGCGGAAA 59.202 45.455 0.00 0.00 0.00 3.13
3903 5595 5.661056 TGGATCATCGTTACTCTTGTCTT 57.339 39.130 0.00 0.00 0.00 3.01
3947 5642 3.710209 CATTCATGGATCCTCTACCCC 57.290 52.381 14.23 0.00 0.00 4.95
3985 5680 4.433805 CGGTATGTACAACTTTGACGAAGC 60.434 45.833 0.00 0.00 39.04 3.86
3986 5681 4.919168 TCGGTATGTACAACTTTGACGAAG 59.081 41.667 0.00 0.50 41.32 3.79
3989 5684 4.860352 TCATCGGTATGTACAACTTTGACG 59.140 41.667 0.00 0.00 34.50 4.35
3990 5685 6.903883 ATCATCGGTATGTACAACTTTGAC 57.096 37.500 0.00 0.00 34.50 3.18
3991 5686 9.040939 CATAATCATCGGTATGTACAACTTTGA 57.959 33.333 0.00 0.00 34.50 2.69
3992 5687 8.826710 ACATAATCATCGGTATGTACAACTTTG 58.173 33.333 0.00 0.00 38.79 2.77
3993 5688 8.958119 ACATAATCATCGGTATGTACAACTTT 57.042 30.769 0.00 0.00 38.79 2.66
3995 5690 7.722363 TGACATAATCATCGGTATGTACAACT 58.278 34.615 0.00 0.00 40.26 3.16
3996 5691 7.940178 TGACATAATCATCGGTATGTACAAC 57.060 36.000 0.00 0.00 40.26 3.32
4010 5705 2.049888 TGCCCGCAATGACATAATCA 57.950 45.000 0.00 0.00 43.13 2.57
4011 5706 2.553602 TCATGCCCGCAATGACATAATC 59.446 45.455 0.00 0.00 0.00 1.75
4012 5707 2.585330 TCATGCCCGCAATGACATAAT 58.415 42.857 0.00 0.00 0.00 1.28
4013 5708 2.049888 TCATGCCCGCAATGACATAA 57.950 45.000 0.00 0.00 0.00 1.90
4014 5709 1.948834 CTTCATGCCCGCAATGACATA 59.051 47.619 0.00 0.00 0.00 2.29
4015 5710 0.742505 CTTCATGCCCGCAATGACAT 59.257 50.000 0.00 0.00 0.00 3.06
4016 5711 0.608856 ACTTCATGCCCGCAATGACA 60.609 50.000 0.00 0.00 0.00 3.58
4017 5712 1.378531 TACTTCATGCCCGCAATGAC 58.621 50.000 0.00 0.00 0.00 3.06
4018 5713 1.742831 GTTACTTCATGCCCGCAATGA 59.257 47.619 0.00 0.00 0.00 2.57
4019 5714 1.472082 TGTTACTTCATGCCCGCAATG 59.528 47.619 0.00 0.00 0.00 2.82
4020 5715 1.472480 GTGTTACTTCATGCCCGCAAT 59.528 47.619 0.00 0.00 0.00 3.56
4021 5716 0.878416 GTGTTACTTCATGCCCGCAA 59.122 50.000 0.00 0.00 0.00 4.85
4022 5717 0.958382 GGTGTTACTTCATGCCCGCA 60.958 55.000 0.00 0.00 0.00 5.69
4023 5718 0.958382 TGGTGTTACTTCATGCCCGC 60.958 55.000 0.00 0.00 0.00 6.13
4024 5719 1.750193 ATGGTGTTACTTCATGCCCG 58.250 50.000 0.00 0.00 0.00 6.13
4025 5720 5.852282 ATAAATGGTGTTACTTCATGCCC 57.148 39.130 0.00 0.00 0.00 5.36
4026 5721 9.893305 GTATAATAAATGGTGTTACTTCATGCC 57.107 33.333 0.00 0.00 0.00 4.40
4080 5839 4.832266 TGTCAAGCACACCAATTTCCTAAT 59.168 37.500 0.00 0.00 0.00 1.73
4082 5841 3.820467 CTGTCAAGCACACCAATTTCCTA 59.180 43.478 0.00 0.00 0.00 2.94
4083 5842 2.624838 CTGTCAAGCACACCAATTTCCT 59.375 45.455 0.00 0.00 0.00 3.36
4084 5843 2.288395 CCTGTCAAGCACACCAATTTCC 60.288 50.000 0.00 0.00 0.00 3.13
4085 5844 2.622942 TCCTGTCAAGCACACCAATTTC 59.377 45.455 0.00 0.00 0.00 2.17
4086 5845 2.624838 CTCCTGTCAAGCACACCAATTT 59.375 45.455 0.00 0.00 0.00 1.82
4087 5846 2.233271 CTCCTGTCAAGCACACCAATT 58.767 47.619 0.00 0.00 0.00 2.32
4088 5847 1.901591 CTCCTGTCAAGCACACCAAT 58.098 50.000 0.00 0.00 0.00 3.16
4089 5848 0.819259 GCTCCTGTCAAGCACACCAA 60.819 55.000 0.00 0.00 39.61 3.67
4090 5849 1.227943 GCTCCTGTCAAGCACACCA 60.228 57.895 0.00 0.00 39.61 4.17
4091 5850 0.536006 AAGCTCCTGTCAAGCACACC 60.536 55.000 0.00 0.00 42.35 4.16
4092 5851 2.072298 CTAAGCTCCTGTCAAGCACAC 58.928 52.381 0.00 0.00 42.35 3.82
4093 5852 1.609061 GCTAAGCTCCTGTCAAGCACA 60.609 52.381 0.00 0.00 42.35 4.57
4094 5853 1.082690 GCTAAGCTCCTGTCAAGCAC 58.917 55.000 0.00 0.00 42.35 4.40
4095 5854 0.390340 CGCTAAGCTCCTGTCAAGCA 60.390 55.000 0.00 0.00 42.35 3.91
4096 5855 1.700600 GCGCTAAGCTCCTGTCAAGC 61.701 60.000 0.00 0.00 44.04 4.01
4108 5867 0.392998 ATTGACTGGGTGGCGCTAAG 60.393 55.000 7.64 0.00 0.00 2.18
4141 5900 2.296752 TGATTGGGACGTGACGAGTTAA 59.703 45.455 13.70 1.87 0.00 2.01
4182 5941 1.188219 AGTGATCTGTGTGAGCGGGT 61.188 55.000 0.00 0.00 32.98 5.28
4194 5953 1.298993 CTGGGCTGCACAGTGATCT 59.701 57.895 23.45 0.00 0.00 2.75
4196 5955 3.164479 ACTGGGCTGCACAGTGAT 58.836 55.556 34.68 12.35 46.67 3.06
4200 5959 3.046087 CGTGACTGGGCTGCACAG 61.046 66.667 29.20 29.20 41.64 3.66
4225 5984 2.030213 GCACGAACATTCTCTCATCTGC 59.970 50.000 0.00 0.00 0.00 4.26
4238 5997 2.675844 CGGAATTCATAAGGCACGAACA 59.324 45.455 7.93 0.00 0.00 3.18
4257 6016 8.072567 ACGTTACACTAGCTATAATTACTTCGG 58.927 37.037 0.00 0.00 0.00 4.30
4287 6053 2.120312 TGGAATTGGAGGGCGTGTATA 58.880 47.619 0.00 0.00 0.00 1.47
4288 6054 0.916086 TGGAATTGGAGGGCGTGTAT 59.084 50.000 0.00 0.00 0.00 2.29
4289 6055 0.693622 TTGGAATTGGAGGGCGTGTA 59.306 50.000 0.00 0.00 0.00 2.90
4290 6056 0.178975 TTTGGAATTGGAGGGCGTGT 60.179 50.000 0.00 0.00 0.00 4.49
4291 6057 0.243636 GTTTGGAATTGGAGGGCGTG 59.756 55.000 0.00 0.00 0.00 5.34
4292 6058 0.178975 TGTTTGGAATTGGAGGGCGT 60.179 50.000 0.00 0.00 0.00 5.68
4293 6059 0.965439 TTGTTTGGAATTGGAGGGCG 59.035 50.000 0.00 0.00 0.00 6.13
4294 6060 3.181455 ACTTTTGTTTGGAATTGGAGGGC 60.181 43.478 0.00 0.00 0.00 5.19
4297 6063 3.809279 GCCACTTTTGTTTGGAATTGGAG 59.191 43.478 0.00 0.00 34.46 3.86
4298 6064 3.198635 TGCCACTTTTGTTTGGAATTGGA 59.801 39.130 0.00 0.00 34.46 3.53
4299 6065 3.312146 GTGCCACTTTTGTTTGGAATTGG 59.688 43.478 0.00 0.00 34.46 3.16
4300 6066 3.312146 GGTGCCACTTTTGTTTGGAATTG 59.688 43.478 0.00 0.00 34.46 2.32
4301 6067 3.054802 TGGTGCCACTTTTGTTTGGAATT 60.055 39.130 0.00 0.00 34.46 2.17
4302 6068 2.503356 TGGTGCCACTTTTGTTTGGAAT 59.497 40.909 0.00 0.00 34.46 3.01
4303 6069 1.902508 TGGTGCCACTTTTGTTTGGAA 59.097 42.857 0.00 0.00 34.46 3.53
4310 6076 2.095768 CGTCTATGTGGTGCCACTTTTG 60.096 50.000 20.46 11.44 46.30 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.