Multiple sequence alignment - TraesCS1A01G201400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G201400 chr1A 100.000 4442 0 0 1 4442 362402114 362406555 0.000000e+00 8203.0
1 TraesCS1A01G201400 chr1A 98.198 111 2 0 4159 4269 489169790 489169900 1.260000e-45 195.0
2 TraesCS1A01G201400 chr1A 85.093 161 20 3 3967 4125 593410190 593410032 1.280000e-35 161.0
3 TraesCS1A01G201400 chr1D 95.677 3516 105 15 1 3487 289959872 289963369 0.000000e+00 5607.0
4 TraesCS1A01G201400 chr1D 89.778 225 15 6 3748 3969 314506183 314506402 9.410000e-72 281.0
5 TraesCS1A01G201400 chr1D 88.646 229 17 7 3528 3756 289963364 289963583 2.040000e-68 270.0
6 TraesCS1A01G201400 chr1D 97.436 117 2 1 4153 4268 459859154 459859038 9.750000e-47 198.0
7 TraesCS1A01G201400 chr1D 97.059 34 1 0 4122 4155 289963596 289963629 1.730000e-04 58.4
8 TraesCS1A01G201400 chr1B 94.707 3495 125 19 34 3487 391267366 391270841 0.000000e+00 5374.0
9 TraesCS1A01G201400 chr1B 87.946 224 15 9 3528 3751 391270836 391271047 2.050000e-63 254.0
10 TraesCS1A01G201400 chr1B 85.870 184 13 3 4266 4442 391271103 391271280 2.730000e-42 183.0
11 TraesCS1A01G201400 chr1B 97.059 34 1 0 4122 4155 391271065 391271098 1.730000e-04 58.4
12 TraesCS1A01G201400 chr4A 94.975 199 10 0 3752 3950 116143337 116143535 3.340000e-81 313.0
13 TraesCS1A01G201400 chr4A 85.625 160 17 6 3972 4127 216010211 216010054 3.560000e-36 163.0
14 TraesCS1A01G201400 chr3A 96.791 187 6 0 3759 3945 701344484 701344670 3.340000e-81 313.0
15 TraesCS1A01G201400 chr3A 84.211 171 22 4 3959 4125 674734179 674734010 1.280000e-35 161.0
16 TraesCS1A01G201400 chr3A 84.756 164 19 5 3963 4122 561038544 561038705 4.600000e-35 159.0
17 TraesCS1A01G201400 chr6A 97.268 183 5 0 3759 3941 603917549 603917731 1.200000e-80 311.0
18 TraesCS1A01G201400 chr6A 91.729 133 8 2 4145 4275 379262295 379262426 9.810000e-42 182.0
19 TraesCS1A01G201400 chr6A 85.976 164 12 8 3969 4125 38404623 38404464 9.880000e-37 165.0
20 TraesCS1A01G201400 chr5A 97.268 183 5 0 3759 3941 345670741 345670559 1.200000e-80 311.0
21 TraesCS1A01G201400 chr5A 92.683 205 13 2 3747 3950 660208202 660208405 1.210000e-75 294.0
22 TraesCS1A01G201400 chr5A 95.726 117 5 0 4159 4275 299273009 299272893 5.870000e-44 189.0
23 TraesCS1A01G201400 chr7A 93.596 203 12 1 3748 3949 723355848 723356050 7.220000e-78 302.0
24 TraesCS1A01G201400 chr7A 96.694 121 2 2 4149 4268 267276170 267276051 2.710000e-47 200.0
25 TraesCS1A01G201400 chr2A 93.596 203 11 2 3750 3951 4385634 4385433 7.220000e-78 302.0
26 TraesCS1A01G201400 chr2A 97.345 113 2 1 4156 4267 180979267 180979155 1.630000e-44 191.0
27 TraesCS1A01G201400 chr2A 86.076 158 13 8 3968 4122 715471558 715471709 1.280000e-35 161.0
28 TraesCS1A01G201400 chr5D 93.171 205 8 6 3748 3949 488352313 488352514 3.360000e-76 296.0
29 TraesCS1A01G201400 chr5D 85.987 157 14 6 3972 4122 539985543 539985697 1.280000e-35 161.0
30 TraesCS1A01G201400 chrUn 95.798 119 4 1 4151 4268 94014500 94014618 1.630000e-44 191.0
31 TraesCS1A01G201400 chrUn 86.842 152 12 8 3974 4122 474962347 474962493 3.560000e-36 163.0
32 TraesCS1A01G201400 chr2B 94.309 123 4 3 4157 4276 621062638 621062516 7.590000e-43 185.0
33 TraesCS1A01G201400 chr3B 90.511 137 9 4 4152 4287 494075699 494075566 1.270000e-40 178.0
34 TraesCS1A01G201400 chr7B 86.335 161 13 6 3972 4125 277651824 277651666 2.750000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G201400 chr1A 362402114 362406555 4441 False 8203.000000 8203 100.0000 1 4442 1 chr1A.!!$F1 4441
1 TraesCS1A01G201400 chr1D 289959872 289963629 3757 False 1978.466667 5607 93.7940 1 4155 3 chr1D.!!$F2 4154
2 TraesCS1A01G201400 chr1B 391267366 391271280 3914 False 1467.350000 5374 91.3955 34 4442 4 chr1B.!!$F1 4408

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
366 372 0.319040 CCTATCCATCCACAGACGCG 60.319 60.000 3.53 3.53 0.00 6.01 F
653 674 0.388391 TACGATTCCGCCGTTTCGTT 60.388 50.000 10.60 0.00 41.65 3.85 F
963 1001 0.464554 GGAGTTGTGGATAGGCTGGC 60.465 60.000 0.00 0.00 0.00 4.85 F
2509 2550 1.300697 GTGTCGAGGCCTTTCGTGT 60.301 57.895 6.77 0.00 41.22 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2051 2092 0.102481 CACTTCGTACTCCGGGATGG 59.898 60.000 0.0 0.0 37.11 3.51 R
2529 2570 0.454600 GGAGCACGTCGAATCCAGTA 59.545 55.000 0.0 0.0 0.00 2.74 R
3405 3446 1.511305 GCTGATCTTCACGTCCGGA 59.489 57.895 0.0 0.0 0.00 5.14 R
4041 4083 0.034756 CACCCACACACGAATCTCCA 59.965 55.000 0.0 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 5.048846 AGGGAGTAGAGCTTTGACAAAAA 57.951 39.130 1.62 0.00 0.00 1.94
57 58 2.617308 CAGGGTATGCATGCTCTTTGAG 59.383 50.000 15.26 0.00 0.00 3.02
69 70 3.753272 TGCTCTTTGAGGTGATTAGCAAC 59.247 43.478 0.00 0.00 35.70 4.17
105 106 0.878523 TTTGCCGTGGACTCGTTCTG 60.879 55.000 0.00 0.00 0.00 3.02
106 107 2.023414 TTGCCGTGGACTCGTTCTGT 62.023 55.000 0.00 0.00 0.00 3.41
107 108 1.733399 GCCGTGGACTCGTTCTGTC 60.733 63.158 0.00 0.00 0.00 3.51
108 109 1.442184 CCGTGGACTCGTTCTGTCG 60.442 63.158 0.00 0.00 35.45 4.35
123 124 3.099905 TCTGTCGTGGATCAAATCTCCT 58.900 45.455 0.00 0.00 33.69 3.69
125 126 2.831526 TGTCGTGGATCAAATCTCCTGA 59.168 45.455 0.00 0.00 33.69 3.86
194 196 2.172717 TCCTGAAAAAGATCCCCGATCC 59.827 50.000 0.00 0.00 39.66 3.36
241 243 2.157668 CACTGCACACGGTCTAATCAAC 59.842 50.000 0.00 0.00 31.05 3.18
255 257 7.241376 GGTCTAATCAACCAATCAAACTAACG 58.759 38.462 0.00 0.00 36.75 3.18
259 261 6.877611 ATCAACCAATCAAACTAACGAACT 57.122 33.333 0.00 0.00 0.00 3.01
366 372 0.319040 CCTATCCATCCACAGACGCG 60.319 60.000 3.53 3.53 0.00 6.01
368 374 2.677573 TATCCATCCACAGACGCGCG 62.678 60.000 30.96 30.96 0.00 6.86
586 607 2.276201 CGCCGGATCACATCAACTTTA 58.724 47.619 5.05 0.00 0.00 1.85
588 609 2.354821 GCCGGATCACATCAACTTTACC 59.645 50.000 5.05 0.00 0.00 2.85
591 612 3.621214 CGGATCACATCAACTTTACCCCA 60.621 47.826 0.00 0.00 0.00 4.96
647 668 3.454573 TGGCTACGATTCCGCCGT 61.455 61.111 0.00 0.00 46.67 5.68
653 674 0.388391 TACGATTCCGCCGTTTCGTT 60.388 50.000 10.60 0.00 41.65 3.85
658 679 3.770424 CCGCCGTTTCGTTCGTCC 61.770 66.667 0.00 0.00 0.00 4.79
660 681 2.713894 CGCCGTTTCGTTCGTCCTC 61.714 63.158 0.00 0.00 0.00 3.71
680 701 0.966179 TTGAGCGCTGACAAGTCCTA 59.034 50.000 18.48 0.00 0.00 2.94
747 773 4.867599 GGATCGTGGCCGTCCGAC 62.868 72.222 13.29 8.19 35.69 4.79
799 837 0.547553 GGTTGGCTTCCCGGGTTATA 59.452 55.000 22.86 0.00 0.00 0.98
809 847 1.655484 CCGGGTTATACGGTTCAACC 58.345 55.000 12.66 12.66 46.03 3.77
877 915 5.333513 GGGTCGTCGAAAGCTATATCTATG 58.666 45.833 0.00 0.00 0.00 2.23
963 1001 0.464554 GGAGTTGTGGATAGGCTGGC 60.465 60.000 0.00 0.00 0.00 4.85
1244 1285 2.126965 CACGTCCGTGGAGTCGAC 60.127 66.667 7.70 7.70 42.00 4.20
1249 1290 2.197605 TCCGTGGAGTCGACAAGCA 61.198 57.895 19.50 0.00 0.00 3.91
1452 1493 3.379445 GCCGAGACCAAGGACGGA 61.379 66.667 20.55 0.00 46.94 4.69
1728 1769 4.367023 TTCGACAGGGCGTTCGGG 62.367 66.667 0.00 0.00 0.00 5.14
1998 2039 2.158959 CATCGACAAGCGTCCCGAC 61.159 63.158 0.00 0.00 39.11 4.79
2502 2543 3.005539 ATGCAGGTGTCGAGGCCT 61.006 61.111 3.86 3.86 35.04 5.19
2509 2550 1.300697 GTGTCGAGGCCTTTCGTGT 60.301 57.895 6.77 0.00 41.22 4.49
2541 2582 1.591863 GGCCGCTACTGGATTCGAC 60.592 63.158 0.00 0.00 0.00 4.20
2553 2594 1.671850 GGATTCGACGTGCTCCAGAAA 60.672 52.381 0.00 0.00 0.00 2.52
3405 3446 1.741770 GCTCAAGACGGTGCGGAAT 60.742 57.895 0.00 0.00 0.00 3.01
3486 3527 2.029380 CGACAGAGTGGATGTGTTGGTA 60.029 50.000 0.00 0.00 35.08 3.25
3487 3528 3.326747 GACAGAGTGGATGTGTTGGTAC 58.673 50.000 0.00 0.00 35.08 3.34
3488 3529 2.972713 ACAGAGTGGATGTGTTGGTACT 59.027 45.455 0.00 0.00 29.32 2.73
3489 3530 3.391296 ACAGAGTGGATGTGTTGGTACTT 59.609 43.478 0.00 0.00 29.32 2.24
3490 3531 3.748048 CAGAGTGGATGTGTTGGTACTTG 59.252 47.826 0.00 0.00 0.00 3.16
3491 3532 3.074412 GAGTGGATGTGTTGGTACTTGG 58.926 50.000 0.00 0.00 0.00 3.61
3492 3533 2.441750 AGTGGATGTGTTGGTACTTGGT 59.558 45.455 0.00 0.00 0.00 3.67
3493 3534 3.649023 AGTGGATGTGTTGGTACTTGGTA 59.351 43.478 0.00 0.00 0.00 3.25
3494 3535 4.000988 GTGGATGTGTTGGTACTTGGTAG 58.999 47.826 0.00 0.00 0.00 3.18
3495 3536 3.904965 TGGATGTGTTGGTACTTGGTAGA 59.095 43.478 0.00 0.00 0.00 2.59
3496 3537 4.251268 GGATGTGTTGGTACTTGGTAGAC 58.749 47.826 0.00 0.00 0.00 2.59
3497 3538 4.020485 GGATGTGTTGGTACTTGGTAGACT 60.020 45.833 0.00 0.00 0.00 3.24
3498 3539 5.512576 GGATGTGTTGGTACTTGGTAGACTT 60.513 44.000 0.00 0.00 0.00 3.01
3499 3540 5.362105 TGTGTTGGTACTTGGTAGACTTT 57.638 39.130 0.00 0.00 0.00 2.66
3500 3541 5.747342 TGTGTTGGTACTTGGTAGACTTTT 58.253 37.500 0.00 0.00 0.00 2.27
3501 3542 6.181908 TGTGTTGGTACTTGGTAGACTTTTT 58.818 36.000 0.00 0.00 0.00 1.94
3526 3567 7.656707 TTTTGATAAACTTGGTACTCCGTAC 57.343 36.000 0.00 0.00 38.19 3.67
3527 3568 6.594788 TTGATAAACTTGGTACTCCGTACT 57.405 37.500 4.40 0.00 38.85 2.73
3528 3569 6.594788 TGATAAACTTGGTACTCCGTACTT 57.405 37.500 4.40 0.00 38.85 2.24
3529 3570 6.392354 TGATAAACTTGGTACTCCGTACTTG 58.608 40.000 4.40 0.00 38.85 3.16
3530 3571 3.672767 AACTTGGTACTCCGTACTTGG 57.327 47.619 4.40 0.00 38.85 3.61
3531 3572 2.601905 ACTTGGTACTCCGTACTTGGT 58.398 47.619 4.40 0.00 38.85 3.67
3546 3587 7.287005 TCCGTACTTGGTAGACTTCATGATATT 59.713 37.037 0.00 0.00 0.00 1.28
3548 3589 7.921214 CGTACTTGGTAGACTTCATGATATTGT 59.079 37.037 0.00 0.00 0.00 2.71
3643 3684 4.881273 TGCAGTGTTTACAGAATTGTCAGT 59.119 37.500 0.00 0.00 38.76 3.41
3665 3706 9.411189 TCAGTATTTAATTGTTACCCATTACCC 57.589 33.333 0.00 0.00 0.00 3.69
3666 3707 9.191479 CAGTATTTAATTGTTACCCATTACCCA 57.809 33.333 0.00 0.00 0.00 4.51
3667 3708 9.945633 AGTATTTAATTGTTACCCATTACCCAT 57.054 29.630 0.00 0.00 0.00 4.00
3675 3717 7.948034 TGTTACCCATTACCCATTCTTTAAG 57.052 36.000 0.00 0.00 0.00 1.85
3677 3719 7.951245 TGTTACCCATTACCCATTCTTTAAGTT 59.049 33.333 0.00 0.00 0.00 2.66
3683 3725 8.364142 CCATTACCCATTCTTTAAGTTGTGAAA 58.636 33.333 0.00 0.00 0.00 2.69
3704 3746 8.674607 GTGAAATACAGTTTTTATCCCCTACTG 58.325 37.037 0.00 0.00 41.42 2.74
3706 3748 4.929146 ACAGTTTTTATCCCCTACTGCT 57.071 40.909 0.00 0.00 39.77 4.24
3709 3751 5.487845 ACAGTTTTTATCCCCTACTGCTACT 59.512 40.000 0.00 0.00 39.77 2.57
3710 3752 6.670902 ACAGTTTTTATCCCCTACTGCTACTA 59.329 38.462 0.00 0.00 39.77 1.82
3711 3753 7.347485 ACAGTTTTTATCCCCTACTGCTACTAT 59.653 37.037 0.00 0.00 39.77 2.12
3714 3756 9.872721 GTTTTTATCCCCTACTGCTACTATATC 57.127 37.037 0.00 0.00 0.00 1.63
3770 3812 8.801882 TCATTTAAATTAAGGTGTGTCTAGGG 57.198 34.615 0.00 0.00 0.00 3.53
3771 3813 7.338449 TCATTTAAATTAAGGTGTGTCTAGGGC 59.662 37.037 0.00 0.00 0.00 5.19
3772 3814 4.650972 AAATTAAGGTGTGTCTAGGGCA 57.349 40.909 0.00 0.00 0.00 5.36
3773 3815 3.629142 ATTAAGGTGTGTCTAGGGCAC 57.371 47.619 10.20 10.20 37.37 5.01
3774 3816 2.018355 TAAGGTGTGTCTAGGGCACA 57.982 50.000 14.22 14.22 43.60 4.57
3775 3817 1.362224 AAGGTGTGTCTAGGGCACAT 58.638 50.000 18.92 8.37 46.66 3.21
3776 3818 0.905357 AGGTGTGTCTAGGGCACATC 59.095 55.000 18.92 18.43 46.66 3.06
3777 3819 0.905357 GGTGTGTCTAGGGCACATCT 59.095 55.000 18.92 0.00 46.66 2.90
3778 3820 2.108168 GGTGTGTCTAGGGCACATCTA 58.892 52.381 18.92 0.21 46.66 1.98
3779 3821 2.101582 GGTGTGTCTAGGGCACATCTAG 59.898 54.545 18.92 0.00 46.66 2.43
3780 3822 3.024547 GTGTGTCTAGGGCACATCTAGA 58.975 50.000 18.92 0.00 46.66 2.43
3781 3823 3.639094 GTGTGTCTAGGGCACATCTAGAT 59.361 47.826 18.92 0.00 46.66 1.98
3782 3824 3.638627 TGTGTCTAGGGCACATCTAGATG 59.361 47.826 27.63 27.63 43.25 2.90
3806 3848 9.973450 ATGTGCTCTAGTTATTACACATCTAAG 57.027 33.333 0.00 0.00 43.27 2.18
3807 3849 8.967918 TGTGCTCTAGTTATTACACATCTAAGT 58.032 33.333 0.00 0.00 33.41 2.24
3808 3850 9.239002 GTGCTCTAGTTATTACACATCTAAGTG 57.761 37.037 0.00 0.00 44.93 3.16
3809 3851 9.185680 TGCTCTAGTTATTACACATCTAAGTGA 57.814 33.333 0.57 0.00 42.05 3.41
3810 3852 9.672086 GCTCTAGTTATTACACATCTAAGTGAG 57.328 37.037 0.57 0.00 42.05 3.51
3819 3861 8.763049 TTACACATCTAAGTGAGTGAATCAAG 57.237 34.615 0.57 0.00 42.05 3.02
3820 3862 5.641209 ACACATCTAAGTGAGTGAATCAAGC 59.359 40.000 0.57 0.00 42.05 4.01
3821 3863 5.640783 CACATCTAAGTGAGTGAATCAAGCA 59.359 40.000 0.00 0.00 42.05 3.91
3822 3864 6.315642 CACATCTAAGTGAGTGAATCAAGCAT 59.684 38.462 0.00 0.00 42.05 3.79
3823 3865 7.493645 CACATCTAAGTGAGTGAATCAAGCATA 59.506 37.037 0.00 0.00 42.05 3.14
3824 3866 8.043113 ACATCTAAGTGAGTGAATCAAGCATAA 58.957 33.333 0.00 0.00 40.43 1.90
3825 3867 8.886719 CATCTAAGTGAGTGAATCAAGCATAAA 58.113 33.333 0.00 0.00 40.43 1.40
3826 3868 8.484641 TCTAAGTGAGTGAATCAAGCATAAAG 57.515 34.615 0.00 0.00 40.43 1.85
3827 3869 8.314021 TCTAAGTGAGTGAATCAAGCATAAAGA 58.686 33.333 0.00 0.00 40.43 2.52
3828 3870 7.750229 AAGTGAGTGAATCAAGCATAAAGAA 57.250 32.000 0.00 0.00 40.43 2.52
3829 3871 7.750229 AGTGAGTGAATCAAGCATAAAGAAA 57.250 32.000 0.00 0.00 40.43 2.52
3830 3872 8.169977 AGTGAGTGAATCAAGCATAAAGAAAA 57.830 30.769 0.00 0.00 40.43 2.29
3831 3873 8.632679 AGTGAGTGAATCAAGCATAAAGAAAAA 58.367 29.630 0.00 0.00 40.43 1.94
3870 3912 5.964070 GAAAATATCCACACGAATCTCGAC 58.036 41.667 2.59 0.00 43.74 4.20
3871 3913 2.750301 TATCCACACGAATCTCGACG 57.250 50.000 2.59 0.00 43.74 5.12
3872 3914 0.809385 ATCCACACGAATCTCGACGT 59.191 50.000 2.59 0.00 43.74 4.34
3873 3915 1.441738 TCCACACGAATCTCGACGTA 58.558 50.000 2.59 0.00 43.74 3.57
3874 3916 1.805943 TCCACACGAATCTCGACGTAA 59.194 47.619 2.59 0.00 43.74 3.18
3875 3917 2.159612 TCCACACGAATCTCGACGTAAG 60.160 50.000 2.59 0.00 43.74 2.34
3876 3918 2.159612 CCACACGAATCTCGACGTAAGA 60.160 50.000 2.59 2.87 43.74 2.10
3877 3919 3.487042 CCACACGAATCTCGACGTAAGAT 60.487 47.826 2.59 7.03 43.74 2.40
3878 3920 4.096311 CACACGAATCTCGACGTAAGATT 58.904 43.478 20.05 20.05 43.74 2.40
3879 3921 5.260900 CACACGAATCTCGACGTAAGATTA 58.739 41.667 19.99 2.98 43.74 1.75
3880 3922 5.735892 CACACGAATCTCGACGTAAGATTAA 59.264 40.000 19.99 0.98 43.74 1.40
3881 3923 6.414109 CACACGAATCTCGACGTAAGATTAAT 59.586 38.462 19.99 11.72 43.74 1.40
3882 3924 6.414109 ACACGAATCTCGACGTAAGATTAATG 59.586 38.462 19.99 20.51 43.74 1.90
3883 3925 6.631636 CACGAATCTCGACGTAAGATTAATGA 59.368 38.462 19.99 4.43 43.74 2.57
3884 3926 6.632035 ACGAATCTCGACGTAAGATTAATGAC 59.368 38.462 19.99 10.32 43.74 3.06
3885 3927 6.631636 CGAATCTCGACGTAAGATTAATGACA 59.368 38.462 19.99 0.00 43.74 3.58
3886 3928 7.323895 CGAATCTCGACGTAAGATTAATGACAT 59.676 37.037 19.99 2.45 43.74 3.06
3887 3929 9.608617 GAATCTCGACGTAAGATTAATGACATA 57.391 33.333 19.99 0.00 42.17 2.29
3888 3930 9.613957 AATCTCGACGTAAGATTAATGACATAG 57.386 33.333 19.04 0.00 40.74 2.23
3889 3931 7.582352 TCTCGACGTAAGATTAATGACATAGG 58.418 38.462 0.00 0.00 43.62 2.57
3890 3932 7.443272 TCTCGACGTAAGATTAATGACATAGGA 59.557 37.037 0.00 0.00 43.62 2.94
3891 3933 7.358066 TCGACGTAAGATTAATGACATAGGAC 58.642 38.462 0.00 0.00 43.62 3.85
3892 3934 7.228108 TCGACGTAAGATTAATGACATAGGACT 59.772 37.037 0.00 0.00 43.62 3.85
3893 3935 7.861372 CGACGTAAGATTAATGACATAGGACTT 59.139 37.037 0.00 0.00 43.62 3.01
3901 3943 8.839310 ATTAATGACATAGGACTTAGATGTGC 57.161 34.615 0.00 0.00 33.99 4.57
3902 3944 5.876651 ATGACATAGGACTTAGATGTGCA 57.123 39.130 0.00 0.00 33.99 4.57
3903 3945 5.675684 TGACATAGGACTTAGATGTGCAA 57.324 39.130 0.00 0.00 33.99 4.08
3904 3946 6.239217 TGACATAGGACTTAGATGTGCAAT 57.761 37.500 0.00 0.00 33.99 3.56
3905 3947 7.360113 TGACATAGGACTTAGATGTGCAATA 57.640 36.000 0.00 0.00 33.99 1.90
3906 3948 7.210174 TGACATAGGACTTAGATGTGCAATAC 58.790 38.462 0.00 0.00 33.99 1.89
3907 3949 6.216569 ACATAGGACTTAGATGTGCAATACG 58.783 40.000 0.00 0.00 32.62 3.06
3908 3950 4.737855 AGGACTTAGATGTGCAATACGT 57.262 40.909 0.00 0.00 0.00 3.57
3909 3951 5.847111 AGGACTTAGATGTGCAATACGTA 57.153 39.130 0.00 0.00 0.00 3.57
3910 3952 6.406692 AGGACTTAGATGTGCAATACGTAT 57.593 37.500 1.14 1.14 0.00 3.06
3911 3953 6.216569 AGGACTTAGATGTGCAATACGTATG 58.783 40.000 9.24 4.85 0.00 2.39
3912 3954 5.405571 GGACTTAGATGTGCAATACGTATGG 59.594 44.000 9.24 7.29 0.00 2.74
3913 3955 4.750098 ACTTAGATGTGCAATACGTATGGC 59.250 41.667 25.24 25.24 33.16 4.40
3914 3956 3.192541 AGATGTGCAATACGTATGGCA 57.807 42.857 29.62 29.62 40.19 4.92
3952 3994 8.492748 GCTTTAGCAAAACTGTTTAAATTACCC 58.507 33.333 6.16 0.00 41.59 3.69
3953 3995 9.535878 CTTTAGCAAAACTGTTTAAATTACCCA 57.464 29.630 6.16 0.00 0.00 4.51
3956 3998 8.972458 AGCAAAACTGTTTAAATTACCCATTT 57.028 26.923 6.16 0.00 38.69 2.32
4020 4062 7.403312 TGCCATAAGTATTGCACATTTAAGT 57.597 32.000 0.00 0.00 30.49 2.24
4021 4063 7.479980 TGCCATAAGTATTGCACATTTAAGTC 58.520 34.615 0.00 0.00 30.49 3.01
4022 4064 6.632834 GCCATAAGTATTGCACATTTAAGTCG 59.367 38.462 0.00 0.00 0.00 4.18
4023 4065 7.678690 GCCATAAGTATTGCACATTTAAGTCGT 60.679 37.037 0.00 0.00 0.00 4.34
4024 4066 7.639850 CCATAAGTATTGCACATTTAAGTCGTG 59.360 37.037 0.00 0.00 0.00 4.35
4025 4067 6.554334 AAGTATTGCACATTTAAGTCGTGT 57.446 33.333 0.00 0.00 33.13 4.49
4026 4068 5.927030 AGTATTGCACATTTAAGTCGTGTG 58.073 37.500 0.00 0.00 44.51 3.82
4027 4069 4.829064 ATTGCACATTTAAGTCGTGTGT 57.171 36.364 6.59 0.00 43.80 3.72
4028 4070 3.870723 TGCACATTTAAGTCGTGTGTC 57.129 42.857 6.59 0.91 43.80 3.67
4029 4071 3.198872 TGCACATTTAAGTCGTGTGTCA 58.801 40.909 6.59 3.13 43.80 3.58
4030 4072 3.812609 TGCACATTTAAGTCGTGTGTCAT 59.187 39.130 6.59 0.00 43.80 3.06
4031 4073 4.274705 TGCACATTTAAGTCGTGTGTCATT 59.725 37.500 6.59 0.00 43.80 2.57
4032 4074 4.612614 GCACATTTAAGTCGTGTGTCATTG 59.387 41.667 6.59 0.00 43.80 2.82
4033 4075 5.559991 GCACATTTAAGTCGTGTGTCATTGA 60.560 40.000 6.59 0.00 43.80 2.57
4034 4076 6.602179 CACATTTAAGTCGTGTGTCATTGAT 58.398 36.000 0.00 0.00 38.66 2.57
4035 4077 6.738200 CACATTTAAGTCGTGTGTCATTGATC 59.262 38.462 0.00 0.00 38.66 2.92
4036 4078 6.650807 ACATTTAAGTCGTGTGTCATTGATCT 59.349 34.615 0.00 0.00 0.00 2.75
4037 4079 7.173218 ACATTTAAGTCGTGTGTCATTGATCTT 59.827 33.333 0.00 0.00 0.00 2.40
4038 4080 8.655970 CATTTAAGTCGTGTGTCATTGATCTTA 58.344 33.333 0.00 0.00 0.00 2.10
4039 4081 7.812309 TTAAGTCGTGTGTCATTGATCTTAG 57.188 36.000 0.00 0.00 0.00 2.18
4040 4082 5.392767 AGTCGTGTGTCATTGATCTTAGT 57.607 39.130 0.00 0.00 0.00 2.24
4041 4083 5.784177 AGTCGTGTGTCATTGATCTTAGTT 58.216 37.500 0.00 0.00 0.00 2.24
4042 4084 5.635280 AGTCGTGTGTCATTGATCTTAGTTG 59.365 40.000 0.00 0.00 0.00 3.16
4043 4085 4.929211 TCGTGTGTCATTGATCTTAGTTGG 59.071 41.667 0.00 0.00 0.00 3.77
4044 4086 4.929211 CGTGTGTCATTGATCTTAGTTGGA 59.071 41.667 0.00 0.00 0.00 3.53
4045 4087 5.062683 CGTGTGTCATTGATCTTAGTTGGAG 59.937 44.000 0.00 0.00 0.00 3.86
4046 4088 6.166279 GTGTGTCATTGATCTTAGTTGGAGA 58.834 40.000 0.00 0.00 0.00 3.71
4047 4089 6.820656 GTGTGTCATTGATCTTAGTTGGAGAT 59.179 38.462 0.00 0.00 36.60 2.75
4048 4090 7.335422 GTGTGTCATTGATCTTAGTTGGAGATT 59.665 37.037 0.00 0.00 34.13 2.40
4049 4091 7.550551 TGTGTCATTGATCTTAGTTGGAGATTC 59.449 37.037 0.00 0.00 34.13 2.52
4050 4092 6.758416 TGTCATTGATCTTAGTTGGAGATTCG 59.242 38.462 0.00 0.00 34.13 3.34
4051 4093 6.758886 GTCATTGATCTTAGTTGGAGATTCGT 59.241 38.462 0.00 0.00 34.13 3.85
4052 4094 6.758416 TCATTGATCTTAGTTGGAGATTCGTG 59.242 38.462 0.00 0.00 34.13 4.35
4053 4095 5.661056 TGATCTTAGTTGGAGATTCGTGT 57.339 39.130 0.00 0.00 34.13 4.49
4054 4096 5.410924 TGATCTTAGTTGGAGATTCGTGTG 58.589 41.667 0.00 0.00 34.13 3.82
4055 4097 4.866508 TCTTAGTTGGAGATTCGTGTGT 57.133 40.909 0.00 0.00 0.00 3.72
4056 4098 4.556233 TCTTAGTTGGAGATTCGTGTGTG 58.444 43.478 0.00 0.00 0.00 3.82
4057 4099 2.169832 AGTTGGAGATTCGTGTGTGG 57.830 50.000 0.00 0.00 0.00 4.17
4058 4100 1.156736 GTTGGAGATTCGTGTGTGGG 58.843 55.000 0.00 0.00 0.00 4.61
4059 4101 0.762418 TTGGAGATTCGTGTGTGGGT 59.238 50.000 0.00 0.00 0.00 4.51
4060 4102 0.034756 TGGAGATTCGTGTGTGGGTG 59.965 55.000 0.00 0.00 0.00 4.61
4061 4103 0.034896 GGAGATTCGTGTGTGGGTGT 59.965 55.000 0.00 0.00 0.00 4.16
4062 4104 1.542547 GGAGATTCGTGTGTGGGTGTT 60.543 52.381 0.00 0.00 0.00 3.32
4063 4105 2.218603 GAGATTCGTGTGTGGGTGTTT 58.781 47.619 0.00 0.00 0.00 2.83
4064 4106 2.616842 GAGATTCGTGTGTGGGTGTTTT 59.383 45.455 0.00 0.00 0.00 2.43
4065 4107 2.616842 AGATTCGTGTGTGGGTGTTTTC 59.383 45.455 0.00 0.00 0.00 2.29
4066 4108 2.116827 TTCGTGTGTGGGTGTTTTCT 57.883 45.000 0.00 0.00 0.00 2.52
4067 4109 2.116827 TCGTGTGTGGGTGTTTTCTT 57.883 45.000 0.00 0.00 0.00 2.52
4068 4110 2.438411 TCGTGTGTGGGTGTTTTCTTT 58.562 42.857 0.00 0.00 0.00 2.52
4069 4111 2.820787 TCGTGTGTGGGTGTTTTCTTTT 59.179 40.909 0.00 0.00 0.00 2.27
4070 4112 3.256136 TCGTGTGTGGGTGTTTTCTTTTT 59.744 39.130 0.00 0.00 0.00 1.94
4071 4113 3.610677 CGTGTGTGGGTGTTTTCTTTTTC 59.389 43.478 0.00 0.00 0.00 2.29
4072 4114 4.617298 CGTGTGTGGGTGTTTTCTTTTTCT 60.617 41.667 0.00 0.00 0.00 2.52
4073 4115 5.234752 GTGTGTGGGTGTTTTCTTTTTCTT 58.765 37.500 0.00 0.00 0.00 2.52
4074 4116 5.699001 GTGTGTGGGTGTTTTCTTTTTCTTT 59.301 36.000 0.00 0.00 0.00 2.52
4075 4117 6.203915 GTGTGTGGGTGTTTTCTTTTTCTTTT 59.796 34.615 0.00 0.00 0.00 2.27
4076 4118 6.768381 TGTGTGGGTGTTTTCTTTTTCTTTTT 59.232 30.769 0.00 0.00 0.00 1.94
4077 4119 7.075121 GTGTGGGTGTTTTCTTTTTCTTTTTG 58.925 34.615 0.00 0.00 0.00 2.44
4078 4120 6.768381 TGTGGGTGTTTTCTTTTTCTTTTTGT 59.232 30.769 0.00 0.00 0.00 2.83
4079 4121 7.075121 GTGGGTGTTTTCTTTTTCTTTTTGTG 58.925 34.615 0.00 0.00 0.00 3.33
4080 4122 6.083630 GGGTGTTTTCTTTTTCTTTTTGTGC 58.916 36.000 0.00 0.00 0.00 4.57
4081 4123 6.072728 GGGTGTTTTCTTTTTCTTTTTGTGCT 60.073 34.615 0.00 0.00 0.00 4.40
4082 4124 7.118535 GGGTGTTTTCTTTTTCTTTTTGTGCTA 59.881 33.333 0.00 0.00 0.00 3.49
4083 4125 8.499967 GGTGTTTTCTTTTTCTTTTTGTGCTAA 58.500 29.630 0.00 0.00 0.00 3.09
4100 4142 9.502091 TTTGTGCTAATTAAGTCACTTAGATGT 57.498 29.630 0.00 0.00 34.94 3.06
4101 4143 8.479313 TGTGCTAATTAAGTCACTTAGATGTG 57.521 34.615 0.00 0.00 39.15 3.21
4102 4144 7.064609 TGTGCTAATTAAGTCACTTAGATGTGC 59.935 37.037 0.00 1.86 37.81 4.57
4103 4145 7.064609 GTGCTAATTAAGTCACTTAGATGTGCA 59.935 37.037 0.00 4.24 37.81 4.57
4104 4146 7.606073 TGCTAATTAAGTCACTTAGATGTGCAA 59.394 33.333 0.00 0.00 37.81 4.08
4105 4147 7.905493 GCTAATTAAGTCACTTAGATGTGCAAC 59.095 37.037 0.00 0.00 37.81 4.17
4151 4193 8.766000 TTTACTCGTTCTTATCACATTTAGCA 57.234 30.769 0.00 0.00 0.00 3.49
4155 4197 8.564574 ACTCGTTCTTATCACATTTAGCAAAAA 58.435 29.630 0.00 0.00 0.00 1.94
4178 4220 9.588096 AAAAATATACTCCCTCTGTTCACTTTT 57.412 29.630 0.00 0.00 0.00 2.27
4184 4226 7.554959 ACTCCCTCTGTTCACTTTTATAAGA 57.445 36.000 0.00 0.00 35.30 2.10
4185 4227 7.387643 ACTCCCTCTGTTCACTTTTATAAGAC 58.612 38.462 0.00 0.00 35.30 3.01
4186 4228 6.708285 TCCCTCTGTTCACTTTTATAAGACC 58.292 40.000 0.00 0.00 35.30 3.85
4187 4229 6.500751 TCCCTCTGTTCACTTTTATAAGACCT 59.499 38.462 0.00 0.00 35.30 3.85
4188 4230 7.017254 TCCCTCTGTTCACTTTTATAAGACCTT 59.983 37.037 0.00 0.00 35.30 3.50
4189 4231 7.119846 CCCTCTGTTCACTTTTATAAGACCTTG 59.880 40.741 0.00 0.00 35.30 3.61
4190 4232 7.878127 CCTCTGTTCACTTTTATAAGACCTTGA 59.122 37.037 0.00 0.00 35.30 3.02
4191 4233 9.273016 CTCTGTTCACTTTTATAAGACCTTGAA 57.727 33.333 0.00 0.00 35.30 2.69
4192 4234 9.273016 TCTGTTCACTTTTATAAGACCTTGAAG 57.727 33.333 0.00 0.00 35.30 3.02
4193 4235 9.273016 CTGTTCACTTTTATAAGACCTTGAAGA 57.727 33.333 0.00 0.00 35.30 2.87
4194 4236 9.052759 TGTTCACTTTTATAAGACCTTGAAGAC 57.947 33.333 0.00 0.00 35.30 3.01
4195 4237 9.052759 GTTCACTTTTATAAGACCTTGAAGACA 57.947 33.333 0.00 0.00 35.30 3.41
4196 4238 9.793259 TTCACTTTTATAAGACCTTGAAGACAT 57.207 29.630 0.00 0.00 35.30 3.06
4197 4239 9.793259 TCACTTTTATAAGACCTTGAAGACATT 57.207 29.630 0.00 0.00 35.30 2.71
4203 4245 7.913674 ATAAGACCTTGAAGACATTTCAGAC 57.086 36.000 0.00 0.00 0.00 3.51
4204 4246 5.296151 AGACCTTGAAGACATTTCAGACA 57.704 39.130 0.00 0.00 0.00 3.41
4205 4247 5.684704 AGACCTTGAAGACATTTCAGACAA 58.315 37.500 0.00 0.00 0.00 3.18
4206 4248 6.302269 AGACCTTGAAGACATTTCAGACAAT 58.698 36.000 0.00 0.00 0.00 2.71
4207 4249 6.206243 AGACCTTGAAGACATTTCAGACAATG 59.794 38.462 0.00 0.00 39.67 2.82
4209 4251 6.998074 ACCTTGAAGACATTTCAGACAATGTA 59.002 34.615 9.58 0.00 45.55 2.29
4210 4252 7.041098 ACCTTGAAGACATTTCAGACAATGTAC 60.041 37.037 9.58 0.00 45.55 2.90
4211 4253 7.041167 CCTTGAAGACATTTCAGACAATGTACA 60.041 37.037 0.00 0.00 45.55 2.90
4212 4254 7.800155 TGAAGACATTTCAGACAATGTACAA 57.200 32.000 0.00 0.00 45.55 2.41
4213 4255 8.219546 TGAAGACATTTCAGACAATGTACAAA 57.780 30.769 0.00 0.00 45.55 2.83
4214 4256 8.681806 TGAAGACATTTCAGACAATGTACAAAA 58.318 29.630 0.00 0.00 45.55 2.44
4215 4257 8.856490 AAGACATTTCAGACAATGTACAAAAC 57.144 30.769 0.00 0.00 45.55 2.43
4216 4258 7.995289 AGACATTTCAGACAATGTACAAAACA 58.005 30.769 0.00 0.00 45.55 2.83
4217 4259 8.131100 AGACATTTCAGACAATGTACAAAACAG 58.869 33.333 0.00 0.00 45.55 3.16
4218 4260 6.697019 ACATTTCAGACAATGTACAAAACAGC 59.303 34.615 0.00 0.00 44.08 4.40
4219 4261 4.829064 TCAGACAATGTACAAAACAGCC 57.171 40.909 0.00 0.00 42.70 4.85
4220 4262 4.460263 TCAGACAATGTACAAAACAGCCT 58.540 39.130 0.00 0.00 42.70 4.58
4221 4263 5.616270 TCAGACAATGTACAAAACAGCCTA 58.384 37.500 0.00 0.00 42.70 3.93
4222 4264 6.237901 TCAGACAATGTACAAAACAGCCTAT 58.762 36.000 0.00 0.00 42.70 2.57
4223 4265 6.714810 TCAGACAATGTACAAAACAGCCTATT 59.285 34.615 0.00 0.00 42.70 1.73
4224 4266 7.230510 TCAGACAATGTACAAAACAGCCTATTT 59.769 33.333 0.00 0.00 42.70 1.40
4225 4267 7.867403 CAGACAATGTACAAAACAGCCTATTTT 59.133 33.333 0.00 0.00 42.70 1.82
4227 4269 7.721402 ACAATGTACAAAACAGCCTATTTTGA 58.279 30.769 14.72 0.00 45.75 2.69
4228 4270 7.867403 ACAATGTACAAAACAGCCTATTTTGAG 59.133 33.333 14.72 1.08 45.75 3.02
4229 4271 6.952773 TGTACAAAACAGCCTATTTTGAGT 57.047 33.333 14.72 0.00 45.75 3.41
4230 4272 7.341445 TGTACAAAACAGCCTATTTTGAGTT 57.659 32.000 14.72 0.00 45.75 3.01
4231 4273 7.199766 TGTACAAAACAGCCTATTTTGAGTTG 58.800 34.615 14.72 6.15 45.75 3.16
4232 4274 6.220726 ACAAAACAGCCTATTTTGAGTTGT 57.779 33.333 14.72 6.63 45.75 3.32
4233 4275 6.273071 ACAAAACAGCCTATTTTGAGTTGTC 58.727 36.000 14.72 0.00 45.75 3.18
4234 4276 6.096846 ACAAAACAGCCTATTTTGAGTTGTCT 59.903 34.615 14.72 0.00 45.75 3.41
4235 4277 5.695851 AACAGCCTATTTTGAGTTGTCTG 57.304 39.130 0.00 0.00 0.00 3.51
4236 4278 4.973168 ACAGCCTATTTTGAGTTGTCTGA 58.027 39.130 0.00 0.00 0.00 3.27
4237 4279 5.376625 ACAGCCTATTTTGAGTTGTCTGAA 58.623 37.500 0.00 0.00 0.00 3.02
4238 4280 5.827797 ACAGCCTATTTTGAGTTGTCTGAAA 59.172 36.000 0.00 0.00 0.00 2.69
4239 4281 6.145535 CAGCCTATTTTGAGTTGTCTGAAAC 58.854 40.000 0.00 0.00 0.00 2.78
4240 4282 5.049405 AGCCTATTTTGAGTTGTCTGAAACG 60.049 40.000 0.00 0.00 35.13 3.60
4241 4283 5.049680 GCCTATTTTGAGTTGTCTGAAACGA 60.050 40.000 0.00 0.00 35.13 3.85
4242 4284 6.363473 CCTATTTTGAGTTGTCTGAAACGAC 58.637 40.000 0.00 0.00 41.93 4.34
4253 4295 8.695355 GTTGTCTGAAACGACTTATAAAAGTG 57.305 34.615 0.00 0.00 46.09 3.16
4254 4296 8.545420 GTTGTCTGAAACGACTTATAAAAGTGA 58.455 33.333 0.00 0.00 46.09 3.41
4255 4297 8.651391 TGTCTGAAACGACTTATAAAAGTGAA 57.349 30.769 0.00 0.00 46.09 3.18
4256 4298 8.545420 TGTCTGAAACGACTTATAAAAGTGAAC 58.455 33.333 0.00 0.00 46.09 3.18
4257 4299 7.734726 GTCTGAAACGACTTATAAAAGTGAACG 59.265 37.037 0.00 0.00 46.09 3.95
4258 4300 6.879962 TGAAACGACTTATAAAAGTGAACGG 58.120 36.000 0.00 0.00 46.09 4.44
4259 4301 6.700960 TGAAACGACTTATAAAAGTGAACGGA 59.299 34.615 0.00 0.00 46.09 4.69
4260 4302 6.701432 AACGACTTATAAAAGTGAACGGAG 57.299 37.500 0.00 0.00 46.09 4.63
4261 4303 5.166398 ACGACTTATAAAAGTGAACGGAGG 58.834 41.667 0.00 0.00 46.09 4.30
4262 4304 4.565564 CGACTTATAAAAGTGAACGGAGGG 59.434 45.833 0.00 0.00 46.09 4.30
4263 4305 5.622914 CGACTTATAAAAGTGAACGGAGGGA 60.623 44.000 0.00 0.00 46.09 4.20
4264 4306 5.731591 ACTTATAAAAGTGAACGGAGGGAG 58.268 41.667 0.00 0.00 44.40 4.30
4284 4326 6.884836 AGGGAGTATGAGTTTTTACCACAATC 59.115 38.462 0.00 0.00 0.00 2.67
4288 4330 5.722021 ATGAGTTTTTACCACAATCACCC 57.278 39.130 0.00 0.00 0.00 4.61
4297 4339 2.569853 ACCACAATCACCCGTCTATCAA 59.430 45.455 0.00 0.00 0.00 2.57
4308 4350 4.654262 ACCCGTCTATCAATTGTACCATCT 59.346 41.667 5.13 0.00 0.00 2.90
4352 4394 5.343325 GTCGCAATTTTTCTCCTGACATTTC 59.657 40.000 0.00 0.00 0.00 2.17
4359 4402 5.324832 TTTCTCCTGACATTTCTTTCCCT 57.675 39.130 0.00 0.00 0.00 4.20
4365 4408 2.084546 GACATTTCTTTCCCTCACCCG 58.915 52.381 0.00 0.00 0.00 5.28
4378 4421 0.616395 TCACCCGGGCTAGACATTGA 60.616 55.000 24.08 11.69 0.00 2.57
4384 4427 1.066143 CGGGCTAGACATTGACTTGGT 60.066 52.381 0.00 0.00 0.00 3.67
4385 4428 2.359900 GGGCTAGACATTGACTTGGTG 58.640 52.381 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 5.297029 AGTGTTTTTGTCAAAGCTCTACTCC 59.703 40.000 0.00 0.00 28.54 3.85
26 27 3.222173 TGCATACCCTGTTTCAAGTGT 57.778 42.857 0.00 0.00 0.00 3.55
57 58 1.135972 CGTGTGCTGTTGCTAATCACC 60.136 52.381 0.00 0.00 40.48 4.02
69 70 2.159787 GCAAATCTCTACACGTGTGCTG 60.160 50.000 30.83 19.38 0.00 4.41
105 106 3.118956 AGTCAGGAGATTTGATCCACGAC 60.119 47.826 0.00 6.50 39.78 4.34
106 107 3.099905 AGTCAGGAGATTTGATCCACGA 58.900 45.455 0.00 0.00 39.47 4.35
107 108 3.452474 GAGTCAGGAGATTTGATCCACG 58.548 50.000 0.00 0.00 39.47 4.94
108 109 3.432890 GGGAGTCAGGAGATTTGATCCAC 60.433 52.174 0.00 0.00 39.47 4.02
123 124 3.299977 CGTCACGGTGGGGAGTCA 61.300 66.667 8.50 0.00 0.00 3.41
125 126 2.522436 TTCGTCACGGTGGGGAGT 60.522 61.111 8.50 0.00 0.00 3.85
241 243 6.035758 GGCTACTAGTTCGTTAGTTTGATTGG 59.964 42.308 0.00 0.00 35.57 3.16
255 257 2.166664 CTGTGGTCAGGGCTACTAGTTC 59.833 54.545 0.00 0.00 37.97 3.01
259 261 2.176889 GAACTGTGGTCAGGGCTACTA 58.823 52.381 0.47 0.00 45.14 1.82
398 409 1.169034 GGGATTGCTTCGCCTGGATC 61.169 60.000 0.00 0.00 0.00 3.36
586 607 4.348495 ATCGGGGGTCAGTGGGGT 62.348 66.667 0.00 0.00 0.00 4.95
588 609 1.847798 TTTGATCGGGGGTCAGTGGG 61.848 60.000 0.00 0.00 0.00 4.61
591 612 1.189524 TCGTTTGATCGGGGGTCAGT 61.190 55.000 0.00 0.00 0.00 3.41
647 668 1.779569 GCTCAAGAGGACGAACGAAA 58.220 50.000 0.14 0.00 0.00 3.46
653 674 1.971695 TCAGCGCTCAAGAGGACGA 60.972 57.895 7.13 0.00 0.00 4.20
658 679 1.066914 GACTTGTCAGCGCTCAAGAG 58.933 55.000 33.29 20.74 42.22 2.85
660 681 0.320247 AGGACTTGTCAGCGCTCAAG 60.320 55.000 27.96 27.96 44.29 3.02
799 837 0.250338 GGAAGCTGAGGTTGAACCGT 60.250 55.000 8.98 0.00 44.90 4.83
802 840 1.882623 CCAAGGAAGCTGAGGTTGAAC 59.117 52.381 0.00 0.00 0.00 3.18
804 842 0.250901 GCCAAGGAAGCTGAGGTTGA 60.251 55.000 0.00 0.00 0.00 3.18
805 843 1.580845 CGCCAAGGAAGCTGAGGTTG 61.581 60.000 0.00 0.00 0.00 3.77
807 845 2.348998 CGCCAAGGAAGCTGAGGT 59.651 61.111 0.00 0.00 0.00 3.85
808 846 3.130160 GCGCCAAGGAAGCTGAGG 61.130 66.667 0.00 0.00 0.00 3.86
809 847 3.130160 GGCGCCAAGGAAGCTGAG 61.130 66.667 24.80 0.00 0.00 3.35
877 915 3.351416 GTTGAACCGTGGACCGCC 61.351 66.667 0.00 0.00 34.38 6.13
947 985 1.819632 CGGCCAGCCTATCCACAAC 60.820 63.158 2.24 0.00 0.00 3.32
963 1001 3.417167 TACCCGCTCTCCTCCTCGG 62.417 68.421 0.00 0.00 41.41 4.63
1239 1280 2.596419 CTCGAATTCTCTGCTTGTCGAC 59.404 50.000 9.11 9.11 34.18 4.20
1244 1285 1.208052 TCCCCTCGAATTCTCTGCTTG 59.792 52.381 3.52 0.00 0.00 4.01
1249 1290 1.490574 CCACTCCCCTCGAATTCTCT 58.509 55.000 3.52 0.00 0.00 3.10
1275 1316 3.777910 GCCGACGGCTTCCCCTTA 61.778 66.667 31.30 0.00 46.69 2.69
1563 1604 3.394836 GGCTCGAGCTTGAGGGGT 61.395 66.667 34.46 0.00 41.70 4.95
1780 1821 2.511600 CCCCGCGTCTTCCATGAC 60.512 66.667 4.92 0.00 0.00 3.06
1998 2039 2.098680 GTGGAGAGCTCGTCGTCG 59.901 66.667 8.37 0.00 38.55 5.12
2033 2074 2.276493 CGTAGTCGACGTCGCCAG 60.276 66.667 32.19 16.89 46.86 4.85
2049 2090 2.679132 CTTCGTACTCCGGGATGGCG 62.679 65.000 0.00 2.55 37.80 5.69
2051 2092 0.102481 CACTTCGTACTCCGGGATGG 59.898 60.000 0.00 0.00 37.11 3.51
2067 2108 3.222354 GACGCCCTTGTCGACCACT 62.222 63.158 14.12 0.00 0.00 4.00
2241 2282 1.135139 ACGGTCACCATCTCTTCATCG 59.865 52.381 0.00 0.00 0.00 3.84
2529 2570 0.454600 GGAGCACGTCGAATCCAGTA 59.545 55.000 0.00 0.00 0.00 2.74
3405 3446 1.511305 GCTGATCTTCACGTCCGGA 59.489 57.895 0.00 0.00 0.00 5.14
3517 3558 4.910195 TGAAGTCTACCAAGTACGGAGTA 58.090 43.478 0.00 0.00 45.11 2.59
3519 3560 4.398358 TCATGAAGTCTACCAAGTACGGAG 59.602 45.833 0.00 0.00 0.00 4.63
3520 3561 4.338012 TCATGAAGTCTACCAAGTACGGA 58.662 43.478 0.00 0.00 0.00 4.69
3521 3562 4.713824 TCATGAAGTCTACCAAGTACGG 57.286 45.455 0.00 0.00 0.00 4.02
3522 3563 7.921214 ACAATATCATGAAGTCTACCAAGTACG 59.079 37.037 0.00 0.00 0.00 3.67
3528 3569 9.875691 GCATATACAATATCATGAAGTCTACCA 57.124 33.333 0.00 0.00 0.00 3.25
3529 3570 9.875691 TGCATATACAATATCATGAAGTCTACC 57.124 33.333 0.00 0.00 0.00 3.18
3546 3587 9.755122 AGTATACTACTGGAATCTGCATATACA 57.245 33.333 2.75 0.80 37.69 2.29
3586 3627 6.877855 CAGTCTAACATTGCCTGCATATCTAT 59.122 38.462 0.00 0.00 0.00 1.98
3650 3691 7.951245 ACTTAAAGAATGGGTAATGGGTAACAA 59.049 33.333 0.00 0.00 39.74 2.83
3662 3703 8.472007 TGTATTTCACAACTTAAAGAATGGGT 57.528 30.769 0.00 0.00 32.95 4.51
3663 3704 8.576442 ACTGTATTTCACAACTTAAAGAATGGG 58.424 33.333 0.00 0.00 36.48 4.00
3664 3705 9.965824 AACTGTATTTCACAACTTAAAGAATGG 57.034 29.630 0.00 0.00 36.48 3.16
3675 3717 7.892609 AGGGGATAAAAACTGTATTTCACAAC 58.107 34.615 0.00 0.00 36.48 3.32
3677 3719 8.387813 AGTAGGGGATAAAAACTGTATTTCACA 58.612 33.333 0.00 0.00 35.30 3.58
3683 3725 6.576778 AGCAGTAGGGGATAAAAACTGTAT 57.423 37.500 0.00 0.00 39.74 2.29
3685 3727 4.929146 AGCAGTAGGGGATAAAAACTGT 57.071 40.909 0.00 0.00 39.74 3.55
3751 3793 4.202524 TGTGCCCTAGACACACCTTAATTT 60.203 41.667 12.81 0.00 42.88 1.82
3755 3797 2.018355 TGTGCCCTAGACACACCTTA 57.982 50.000 12.81 0.00 42.88 2.69
3756 3798 2.848608 TGTGCCCTAGACACACCTT 58.151 52.632 12.81 0.00 42.88 3.50
3757 3799 4.639726 TGTGCCCTAGACACACCT 57.360 55.556 12.81 0.00 42.88 4.00
3761 3803 4.250116 CATCTAGATGTGCCCTAGACAC 57.750 50.000 22.42 8.47 43.57 3.67
3780 3822 9.973450 CTTAGATGTGTAATAACTAGAGCACAT 57.027 33.333 7.56 7.56 46.19 3.21
3781 3823 8.967918 ACTTAGATGTGTAATAACTAGAGCACA 58.032 33.333 0.00 0.00 40.42 4.57
3782 3824 9.239002 CACTTAGATGTGTAATAACTAGAGCAC 57.761 37.037 0.00 0.00 33.61 4.40
3783 3825 9.185680 TCACTTAGATGTGTAATAACTAGAGCA 57.814 33.333 0.00 0.00 38.90 4.26
3784 3826 9.672086 CTCACTTAGATGTGTAATAACTAGAGC 57.328 37.037 0.00 0.00 38.90 4.09
3793 3835 9.376075 CTTGATTCACTCACTTAGATGTGTAAT 57.624 33.333 0.00 0.00 38.90 1.89
3794 3836 7.331934 GCTTGATTCACTCACTTAGATGTGTAA 59.668 37.037 0.00 0.00 38.90 2.41
3795 3837 6.813649 GCTTGATTCACTCACTTAGATGTGTA 59.186 38.462 0.00 0.00 38.90 2.90
3796 3838 5.641209 GCTTGATTCACTCACTTAGATGTGT 59.359 40.000 0.00 0.00 38.90 3.72
3797 3839 5.640783 TGCTTGATTCACTCACTTAGATGTG 59.359 40.000 0.00 0.00 39.15 3.21
3798 3840 5.798132 TGCTTGATTCACTCACTTAGATGT 58.202 37.500 0.00 0.00 32.17 3.06
3799 3841 6.922247 ATGCTTGATTCACTCACTTAGATG 57.078 37.500 0.00 0.00 32.17 2.90
3800 3842 9.107177 CTTTATGCTTGATTCACTCACTTAGAT 57.893 33.333 0.00 0.00 32.17 1.98
3801 3843 8.314021 TCTTTATGCTTGATTCACTCACTTAGA 58.686 33.333 0.00 0.00 32.17 2.10
3802 3844 8.484641 TCTTTATGCTTGATTCACTCACTTAG 57.515 34.615 0.00 0.00 32.17 2.18
3803 3845 8.846943 TTCTTTATGCTTGATTCACTCACTTA 57.153 30.769 0.00 0.00 32.17 2.24
3804 3846 7.750229 TTCTTTATGCTTGATTCACTCACTT 57.250 32.000 0.00 0.00 32.17 3.16
3805 3847 7.750229 TTTCTTTATGCTTGATTCACTCACT 57.250 32.000 0.00 0.00 32.17 3.41
3806 3848 8.801715 TTTTTCTTTATGCTTGATTCACTCAC 57.198 30.769 0.00 0.00 32.17 3.51
3835 3877 9.040939 CGTGTGGATATTTTCCTTTTTCTTTTT 57.959 29.630 0.00 0.00 45.68 1.94
3836 3878 8.417884 TCGTGTGGATATTTTCCTTTTTCTTTT 58.582 29.630 0.00 0.00 45.68 2.27
3837 3879 7.947282 TCGTGTGGATATTTTCCTTTTTCTTT 58.053 30.769 0.00 0.00 45.68 2.52
3838 3880 7.519032 TCGTGTGGATATTTTCCTTTTTCTT 57.481 32.000 0.00 0.00 45.68 2.52
3839 3881 7.519032 TTCGTGTGGATATTTTCCTTTTTCT 57.481 32.000 0.00 0.00 45.68 2.52
3840 3882 8.244113 AGATTCGTGTGGATATTTTCCTTTTTC 58.756 33.333 0.00 0.00 45.68 2.29
3841 3883 8.122472 AGATTCGTGTGGATATTTTCCTTTTT 57.878 30.769 0.00 0.00 45.68 1.94
3842 3884 7.414098 CGAGATTCGTGTGGATATTTTCCTTTT 60.414 37.037 0.00 0.00 39.12 2.27
3843 3885 6.037172 CGAGATTCGTGTGGATATTTTCCTTT 59.963 38.462 0.00 0.00 39.12 3.11
3844 3886 5.523916 CGAGATTCGTGTGGATATTTTCCTT 59.476 40.000 0.00 0.00 39.12 3.36
3845 3887 5.050490 CGAGATTCGTGTGGATATTTTCCT 58.950 41.667 0.00 0.00 39.12 3.36
3846 3888 5.047847 TCGAGATTCGTGTGGATATTTTCC 58.952 41.667 0.00 0.00 42.08 3.13
3847 3889 5.331607 CGTCGAGATTCGTGTGGATATTTTC 60.332 44.000 0.00 0.00 41.35 2.29
3848 3890 4.503007 CGTCGAGATTCGTGTGGATATTTT 59.497 41.667 0.00 0.00 41.35 1.82
3849 3891 4.042398 CGTCGAGATTCGTGTGGATATTT 58.958 43.478 0.00 0.00 41.35 1.40
3850 3892 3.066342 ACGTCGAGATTCGTGTGGATATT 59.934 43.478 0.00 0.00 41.35 1.28
3851 3893 2.617308 ACGTCGAGATTCGTGTGGATAT 59.383 45.455 0.00 0.00 41.35 1.63
3852 3894 2.011947 ACGTCGAGATTCGTGTGGATA 58.988 47.619 0.00 0.00 41.35 2.59
3853 3895 0.809385 ACGTCGAGATTCGTGTGGAT 59.191 50.000 0.00 0.00 41.35 3.41
3854 3896 1.441738 TACGTCGAGATTCGTGTGGA 58.558 50.000 8.84 0.00 41.35 4.02
3855 3897 2.159612 TCTTACGTCGAGATTCGTGTGG 60.160 50.000 8.84 0.44 41.35 4.17
3856 3898 3.113325 TCTTACGTCGAGATTCGTGTG 57.887 47.619 8.84 2.52 41.35 3.82
3857 3899 4.352600 AATCTTACGTCGAGATTCGTGT 57.647 40.909 16.94 2.15 39.06 4.49
3858 3900 6.631636 TCATTAATCTTACGTCGAGATTCGTG 59.368 38.462 22.85 21.01 41.59 4.35
3859 3901 6.632035 GTCATTAATCTTACGTCGAGATTCGT 59.368 38.462 22.85 13.97 41.59 3.85
3860 3902 6.631636 TGTCATTAATCTTACGTCGAGATTCG 59.368 38.462 22.85 15.63 41.59 3.34
3861 3903 7.909777 TGTCATTAATCTTACGTCGAGATTC 57.090 36.000 22.85 13.21 41.59 2.52
3862 3904 9.613957 CTATGTCATTAATCTTACGTCGAGATT 57.386 33.333 22.79 22.79 43.99 2.40
3863 3905 8.237949 CCTATGTCATTAATCTTACGTCGAGAT 58.762 37.037 0.00 8.18 35.43 2.75
3864 3906 7.443272 TCCTATGTCATTAATCTTACGTCGAGA 59.557 37.037 0.00 0.00 0.00 4.04
3865 3907 7.534578 GTCCTATGTCATTAATCTTACGTCGAG 59.465 40.741 0.00 0.00 0.00 4.04
3866 3908 7.228108 AGTCCTATGTCATTAATCTTACGTCGA 59.772 37.037 0.00 0.00 0.00 4.20
3867 3909 7.361127 AGTCCTATGTCATTAATCTTACGTCG 58.639 38.462 0.00 0.00 0.00 5.12
3875 3917 8.930760 GCACATCTAAGTCCTATGTCATTAATC 58.069 37.037 0.00 0.00 31.60 1.75
3876 3918 8.432013 TGCACATCTAAGTCCTATGTCATTAAT 58.568 33.333 0.00 0.00 31.60 1.40
3877 3919 7.791029 TGCACATCTAAGTCCTATGTCATTAA 58.209 34.615 0.00 0.00 31.60 1.40
3878 3920 7.360113 TGCACATCTAAGTCCTATGTCATTA 57.640 36.000 0.00 0.00 31.60 1.90
3879 3921 6.239217 TGCACATCTAAGTCCTATGTCATT 57.761 37.500 0.00 0.00 31.60 2.57
3880 3922 5.876651 TGCACATCTAAGTCCTATGTCAT 57.123 39.130 0.00 0.00 31.60 3.06
3881 3923 5.675684 TTGCACATCTAAGTCCTATGTCA 57.324 39.130 0.00 0.00 31.60 3.58
3882 3924 6.363626 CGTATTGCACATCTAAGTCCTATGTC 59.636 42.308 0.00 0.00 31.60 3.06
3883 3925 6.183360 ACGTATTGCACATCTAAGTCCTATGT 60.183 38.462 0.00 0.00 34.22 2.29
3884 3926 6.216569 ACGTATTGCACATCTAAGTCCTATG 58.783 40.000 0.00 0.00 0.00 2.23
3885 3927 6.406692 ACGTATTGCACATCTAAGTCCTAT 57.593 37.500 0.00 0.00 0.00 2.57
3886 3928 5.847111 ACGTATTGCACATCTAAGTCCTA 57.153 39.130 0.00 0.00 0.00 2.94
3887 3929 4.737855 ACGTATTGCACATCTAAGTCCT 57.262 40.909 0.00 0.00 0.00 3.85
3888 3930 5.405571 CCATACGTATTGCACATCTAAGTCC 59.594 44.000 5.03 0.00 0.00 3.85
3889 3931 5.107453 GCCATACGTATTGCACATCTAAGTC 60.107 44.000 22.78 0.00 0.00 3.01
3890 3932 4.750098 GCCATACGTATTGCACATCTAAGT 59.250 41.667 22.78 0.00 0.00 2.24
3891 3933 4.749598 TGCCATACGTATTGCACATCTAAG 59.250 41.667 25.58 2.72 30.49 2.18
3892 3934 4.698575 TGCCATACGTATTGCACATCTAA 58.301 39.130 25.58 5.96 30.49 2.10
3893 3935 4.329462 TGCCATACGTATTGCACATCTA 57.671 40.909 25.58 6.61 30.49 1.98
3894 3936 3.192541 TGCCATACGTATTGCACATCT 57.807 42.857 25.58 0.00 30.49 2.90
3899 3941 3.192541 AGATGTGCCATACGTATTGCA 57.807 42.857 25.58 25.58 32.69 4.08
3900 3942 4.556233 TCTAGATGTGCCATACGTATTGC 58.444 43.478 21.39 21.39 0.00 3.56
3901 3943 6.638168 CATCTAGATGTGCCATACGTATTG 57.362 41.667 22.42 3.53 34.23 1.90
3926 3968 8.492748 GGGTAATTTAAACAGTTTTGCTAAAGC 58.507 33.333 3.25 0.00 42.50 3.51
3927 3969 9.535878 TGGGTAATTTAAACAGTTTTGCTAAAG 57.464 29.630 3.25 0.00 0.00 1.85
3931 3973 8.972458 AAATGGGTAATTTAAACAGTTTTGCT 57.028 26.923 3.25 0.00 36.69 3.91
3996 4038 7.403312 ACTTAAATGTGCAATACTTATGGCA 57.597 32.000 0.00 0.00 40.19 4.92
3997 4039 6.632834 CGACTTAAATGTGCAATACTTATGGC 59.367 38.462 0.00 0.00 33.16 4.40
3998 4040 7.639850 CACGACTTAAATGTGCAATACTTATGG 59.360 37.037 0.00 0.00 0.00 2.74
3999 4041 8.175069 ACACGACTTAAATGTGCAATACTTATG 58.825 33.333 0.00 0.00 37.11 1.90
4000 4042 8.175069 CACACGACTTAAATGTGCAATACTTAT 58.825 33.333 0.00 0.00 37.52 1.73
4001 4043 7.171848 ACACACGACTTAAATGTGCAATACTTA 59.828 33.333 3.60 0.00 46.19 2.24
4002 4044 6.017440 ACACACGACTTAAATGTGCAATACTT 60.017 34.615 3.60 0.00 46.19 2.24
4003 4045 5.468746 ACACACGACTTAAATGTGCAATACT 59.531 36.000 3.60 0.00 46.19 2.12
4004 4046 5.685841 ACACACGACTTAAATGTGCAATAC 58.314 37.500 3.60 0.00 46.19 1.89
4005 4047 5.467063 TGACACACGACTTAAATGTGCAATA 59.533 36.000 3.60 0.00 46.19 1.90
4006 4048 4.274705 TGACACACGACTTAAATGTGCAAT 59.725 37.500 3.60 0.00 46.19 3.56
4007 4049 3.623510 TGACACACGACTTAAATGTGCAA 59.376 39.130 3.60 0.00 46.19 4.08
4018 4060 5.392767 ACTAAGATCAATGACACACGACT 57.607 39.130 0.00 0.00 0.00 4.18
4019 4061 5.163953 CCAACTAAGATCAATGACACACGAC 60.164 44.000 0.00 0.00 0.00 4.34
4020 4062 4.929211 CCAACTAAGATCAATGACACACGA 59.071 41.667 0.00 0.00 0.00 4.35
4021 4063 4.929211 TCCAACTAAGATCAATGACACACG 59.071 41.667 0.00 0.00 0.00 4.49
4022 4064 6.166279 TCTCCAACTAAGATCAATGACACAC 58.834 40.000 0.00 0.00 0.00 3.82
4023 4065 6.358974 TCTCCAACTAAGATCAATGACACA 57.641 37.500 0.00 0.00 0.00 3.72
4024 4066 7.254252 CGAATCTCCAACTAAGATCAATGACAC 60.254 40.741 0.00 0.00 32.29 3.67
4025 4067 6.758416 CGAATCTCCAACTAAGATCAATGACA 59.242 38.462 0.00 0.00 32.29 3.58
4026 4068 6.758886 ACGAATCTCCAACTAAGATCAATGAC 59.241 38.462 0.00 0.00 32.29 3.06
4027 4069 6.758416 CACGAATCTCCAACTAAGATCAATGA 59.242 38.462 0.00 0.00 32.29 2.57
4028 4070 6.536582 ACACGAATCTCCAACTAAGATCAATG 59.463 38.462 0.00 0.00 32.29 2.82
4029 4071 6.536582 CACACGAATCTCCAACTAAGATCAAT 59.463 38.462 0.00 0.00 32.29 2.57
4030 4072 5.869344 CACACGAATCTCCAACTAAGATCAA 59.131 40.000 0.00 0.00 32.29 2.57
4031 4073 5.047306 ACACACGAATCTCCAACTAAGATCA 60.047 40.000 0.00 0.00 32.29 2.92
4032 4074 5.289675 CACACACGAATCTCCAACTAAGATC 59.710 44.000 0.00 0.00 32.29 2.75
4033 4075 5.171476 CACACACGAATCTCCAACTAAGAT 58.829 41.667 0.00 0.00 34.96 2.40
4034 4076 4.556233 CACACACGAATCTCCAACTAAGA 58.444 43.478 0.00 0.00 0.00 2.10
4035 4077 3.679980 CCACACACGAATCTCCAACTAAG 59.320 47.826 0.00 0.00 0.00 2.18
4036 4078 3.556213 CCCACACACGAATCTCCAACTAA 60.556 47.826 0.00 0.00 0.00 2.24
4037 4079 2.028476 CCCACACACGAATCTCCAACTA 60.028 50.000 0.00 0.00 0.00 2.24
4038 4080 1.270839 CCCACACACGAATCTCCAACT 60.271 52.381 0.00 0.00 0.00 3.16
4039 4081 1.156736 CCCACACACGAATCTCCAAC 58.843 55.000 0.00 0.00 0.00 3.77
4040 4082 0.762418 ACCCACACACGAATCTCCAA 59.238 50.000 0.00 0.00 0.00 3.53
4041 4083 0.034756 CACCCACACACGAATCTCCA 59.965 55.000 0.00 0.00 0.00 3.86
4042 4084 0.034896 ACACCCACACACGAATCTCC 59.965 55.000 0.00 0.00 0.00 3.71
4043 4085 1.878953 AACACCCACACACGAATCTC 58.121 50.000 0.00 0.00 0.00 2.75
4044 4086 2.341846 AAACACCCACACACGAATCT 57.658 45.000 0.00 0.00 0.00 2.40
4045 4087 2.616842 AGAAAACACCCACACACGAATC 59.383 45.455 0.00 0.00 0.00 2.52
4046 4088 2.650322 AGAAAACACCCACACACGAAT 58.350 42.857 0.00 0.00 0.00 3.34
4047 4089 2.116827 AGAAAACACCCACACACGAA 57.883 45.000 0.00 0.00 0.00 3.85
4048 4090 2.116827 AAGAAAACACCCACACACGA 57.883 45.000 0.00 0.00 0.00 4.35
4049 4091 2.931512 AAAGAAAACACCCACACACG 57.068 45.000 0.00 0.00 0.00 4.49
4050 4092 4.816392 AGAAAAAGAAAACACCCACACAC 58.184 39.130 0.00 0.00 0.00 3.82
4051 4093 5.476091 AAGAAAAAGAAAACACCCACACA 57.524 34.783 0.00 0.00 0.00 3.72
4052 4094 6.795098 AAAAGAAAAAGAAAACACCCACAC 57.205 33.333 0.00 0.00 0.00 3.82
4053 4095 6.768381 ACAAAAAGAAAAAGAAAACACCCACA 59.232 30.769 0.00 0.00 0.00 4.17
4054 4096 7.075121 CACAAAAAGAAAAAGAAAACACCCAC 58.925 34.615 0.00 0.00 0.00 4.61
4055 4097 6.293680 GCACAAAAAGAAAAAGAAAACACCCA 60.294 34.615 0.00 0.00 0.00 4.51
4056 4098 6.072728 AGCACAAAAAGAAAAAGAAAACACCC 60.073 34.615 0.00 0.00 0.00 4.61
4057 4099 6.898041 AGCACAAAAAGAAAAAGAAAACACC 58.102 32.000 0.00 0.00 0.00 4.16
4074 4116 9.502091 ACATCTAAGTGACTTAATTAGCACAAA 57.498 29.630 6.51 4.75 36.99 2.83
4075 4117 8.935844 CACATCTAAGTGACTTAATTAGCACAA 58.064 33.333 6.51 4.99 42.05 3.33
4076 4118 7.064609 GCACATCTAAGTGACTTAATTAGCACA 59.935 37.037 6.51 2.29 42.05 4.57
4077 4119 7.064609 TGCACATCTAAGTGACTTAATTAGCAC 59.935 37.037 6.51 6.95 42.05 4.40
4078 4120 7.102993 TGCACATCTAAGTGACTTAATTAGCA 58.897 34.615 6.51 9.94 42.05 3.49
4079 4121 7.539712 TGCACATCTAAGTGACTTAATTAGC 57.460 36.000 6.51 7.74 42.05 3.09
4080 4122 8.935844 TGTTGCACATCTAAGTGACTTAATTAG 58.064 33.333 6.51 0.00 42.05 1.73
4081 4123 8.840833 TGTTGCACATCTAAGTGACTTAATTA 57.159 30.769 6.51 0.00 42.05 1.40
4082 4124 7.744087 TGTTGCACATCTAAGTGACTTAATT 57.256 32.000 6.51 0.00 42.05 1.40
4083 4125 7.445402 AGTTGTTGCACATCTAAGTGACTTAAT 59.555 33.333 6.51 1.18 42.05 1.40
4084 4126 6.765989 AGTTGTTGCACATCTAAGTGACTTAA 59.234 34.615 6.51 0.00 42.05 1.85
4085 4127 6.288294 AGTTGTTGCACATCTAAGTGACTTA 58.712 36.000 4.81 4.81 42.05 2.24
4086 4128 5.126067 AGTTGTTGCACATCTAAGTGACTT 58.874 37.500 2.37 2.37 42.05 3.01
4087 4129 4.708177 AGTTGTTGCACATCTAAGTGACT 58.292 39.130 0.00 0.00 42.05 3.41
4088 4130 6.539649 TTAGTTGTTGCACATCTAAGTGAC 57.460 37.500 12.11 0.00 42.05 3.67
4089 4131 6.785488 CTTAGTTGTTGCACATCTAAGTGA 57.215 37.500 22.70 7.19 44.98 3.41
4093 4135 6.052360 TGTGTCTTAGTTGTTGCACATCTAA 58.948 36.000 13.98 13.98 37.79 2.10
4094 4136 5.606505 TGTGTCTTAGTTGTTGCACATCTA 58.393 37.500 0.00 0.00 32.79 1.98
4095 4137 4.450976 TGTGTCTTAGTTGTTGCACATCT 58.549 39.130 0.00 0.00 32.79 2.90
4096 4138 4.811555 TGTGTCTTAGTTGTTGCACATC 57.188 40.909 0.00 0.00 32.79 3.06
4097 4139 5.065914 AGATGTGTCTTAGTTGTTGCACAT 58.934 37.500 7.56 7.56 46.19 3.21
4098 4140 4.450976 AGATGTGTCTTAGTTGTTGCACA 58.549 39.130 0.00 0.00 40.42 4.57
4099 4141 6.539649 TTAGATGTGTCTTAGTTGTTGCAC 57.460 37.500 0.00 0.00 35.87 4.57
4100 4142 7.744087 ATTTAGATGTGTCTTAGTTGTTGCA 57.256 32.000 0.00 0.00 35.87 4.08
4158 4200 9.268282 TCTTATAAAAGTGAACAGAGGGAGTAT 57.732 33.333 0.00 0.00 34.13 2.12
4159 4201 8.529476 GTCTTATAAAAGTGAACAGAGGGAGTA 58.471 37.037 0.00 0.00 34.13 2.59
4160 4202 7.387643 GTCTTATAAAAGTGAACAGAGGGAGT 58.612 38.462 0.00 0.00 34.13 3.85
4161 4203 6.819146 GGTCTTATAAAAGTGAACAGAGGGAG 59.181 42.308 0.00 0.00 34.13 4.30
4162 4204 6.500751 AGGTCTTATAAAAGTGAACAGAGGGA 59.499 38.462 0.00 0.00 34.13 4.20
4163 4205 6.712276 AGGTCTTATAAAAGTGAACAGAGGG 58.288 40.000 0.00 0.00 34.13 4.30
4164 4206 7.878127 TCAAGGTCTTATAAAAGTGAACAGAGG 59.122 37.037 0.00 0.00 34.13 3.69
4165 4207 8.833231 TCAAGGTCTTATAAAAGTGAACAGAG 57.167 34.615 0.00 0.00 34.13 3.35
4166 4208 9.273016 CTTCAAGGTCTTATAAAAGTGAACAGA 57.727 33.333 0.00 0.00 34.13 3.41
4167 4209 9.273016 TCTTCAAGGTCTTATAAAAGTGAACAG 57.727 33.333 0.00 0.00 34.13 3.16
4168 4210 9.052759 GTCTTCAAGGTCTTATAAAAGTGAACA 57.947 33.333 0.00 0.00 34.13 3.18
4169 4211 9.052759 TGTCTTCAAGGTCTTATAAAAGTGAAC 57.947 33.333 0.00 0.00 34.13 3.18
4170 4212 9.793259 ATGTCTTCAAGGTCTTATAAAAGTGAA 57.207 29.630 0.00 0.00 34.13 3.18
4171 4213 9.793259 AATGTCTTCAAGGTCTTATAAAAGTGA 57.207 29.630 0.00 0.00 34.13 3.41
4177 4219 9.436957 GTCTGAAATGTCTTCAAGGTCTTATAA 57.563 33.333 0.00 0.00 0.00 0.98
4178 4220 8.593679 TGTCTGAAATGTCTTCAAGGTCTTATA 58.406 33.333 0.00 0.00 0.00 0.98
4179 4221 7.453393 TGTCTGAAATGTCTTCAAGGTCTTAT 58.547 34.615 0.00 0.00 0.00 1.73
4180 4222 6.826668 TGTCTGAAATGTCTTCAAGGTCTTA 58.173 36.000 0.00 0.00 0.00 2.10
4181 4223 5.684704 TGTCTGAAATGTCTTCAAGGTCTT 58.315 37.500 0.00 0.00 0.00 3.01
4182 4224 5.296151 TGTCTGAAATGTCTTCAAGGTCT 57.704 39.130 0.00 0.00 0.00 3.85
4183 4225 6.016777 ACATTGTCTGAAATGTCTTCAAGGTC 60.017 38.462 10.41 0.00 45.47 3.85
4184 4226 5.829924 ACATTGTCTGAAATGTCTTCAAGGT 59.170 36.000 10.41 0.00 45.47 3.50
4185 4227 6.323203 ACATTGTCTGAAATGTCTTCAAGG 57.677 37.500 10.41 0.00 45.47 3.61
4186 4228 7.864686 TGTACATTGTCTGAAATGTCTTCAAG 58.135 34.615 16.13 0.00 45.47 3.02
4187 4229 7.800155 TGTACATTGTCTGAAATGTCTTCAA 57.200 32.000 16.13 0.18 45.47 2.69
4188 4230 7.800155 TTGTACATTGTCTGAAATGTCTTCA 57.200 32.000 16.13 12.76 45.47 3.02
4189 4231 8.958043 GTTTTGTACATTGTCTGAAATGTCTTC 58.042 33.333 16.13 11.26 45.47 2.87
4190 4232 8.465999 TGTTTTGTACATTGTCTGAAATGTCTT 58.534 29.630 16.13 2.61 45.47 3.01
4191 4233 7.995289 TGTTTTGTACATTGTCTGAAATGTCT 58.005 30.769 16.13 3.09 45.47 3.41
4192 4234 7.096477 GCTGTTTTGTACATTGTCTGAAATGTC 60.096 37.037 16.13 11.24 45.47 3.06
4194 4236 6.144402 GGCTGTTTTGTACATTGTCTGAAATG 59.856 38.462 0.00 9.50 42.21 2.32
4195 4237 6.040842 AGGCTGTTTTGTACATTGTCTGAAAT 59.959 34.615 0.00 0.00 35.85 2.17
4196 4238 5.359576 AGGCTGTTTTGTACATTGTCTGAAA 59.640 36.000 0.00 0.00 35.85 2.69
4197 4239 4.887071 AGGCTGTTTTGTACATTGTCTGAA 59.113 37.500 0.00 0.00 35.85 3.02
4198 4240 4.460263 AGGCTGTTTTGTACATTGTCTGA 58.540 39.130 0.00 0.00 35.85 3.27
4199 4241 4.836125 AGGCTGTTTTGTACATTGTCTG 57.164 40.909 0.00 0.00 35.85 3.51
4200 4242 7.524717 AAATAGGCTGTTTTGTACATTGTCT 57.475 32.000 3.12 0.00 35.85 3.41
4201 4243 7.865385 TCAAAATAGGCTGTTTTGTACATTGTC 59.135 33.333 33.82 0.00 43.52 3.18
4202 4244 7.721402 TCAAAATAGGCTGTTTTGTACATTGT 58.279 30.769 33.82 7.45 43.52 2.71
4203 4245 7.867403 ACTCAAAATAGGCTGTTTTGTACATTG 59.133 33.333 33.82 23.36 43.52 2.82
4204 4246 7.951591 ACTCAAAATAGGCTGTTTTGTACATT 58.048 30.769 33.82 19.41 43.52 2.71
4205 4247 7.524717 ACTCAAAATAGGCTGTTTTGTACAT 57.475 32.000 33.82 21.40 43.52 2.29
4206 4248 6.952773 ACTCAAAATAGGCTGTTTTGTACA 57.047 33.333 33.82 21.60 43.52 2.90
4207 4249 7.200455 ACAACTCAAAATAGGCTGTTTTGTAC 58.800 34.615 33.82 0.00 43.52 2.90
4208 4250 7.284489 AGACAACTCAAAATAGGCTGTTTTGTA 59.716 33.333 33.82 24.09 43.52 2.41
4209 4251 6.096846 AGACAACTCAAAATAGGCTGTTTTGT 59.903 34.615 33.82 22.91 43.52 2.83
4210 4252 6.418819 CAGACAACTCAAAATAGGCTGTTTTG 59.581 38.462 31.63 31.63 44.10 2.44
4211 4253 6.321181 TCAGACAACTCAAAATAGGCTGTTTT 59.679 34.615 15.20 15.20 0.00 2.43
4212 4254 5.827797 TCAGACAACTCAAAATAGGCTGTTT 59.172 36.000 3.12 3.12 0.00 2.83
4213 4255 5.376625 TCAGACAACTCAAAATAGGCTGTT 58.623 37.500 0.00 0.00 0.00 3.16
4214 4256 4.973168 TCAGACAACTCAAAATAGGCTGT 58.027 39.130 0.00 0.00 0.00 4.40
4215 4257 5.947228 TTCAGACAACTCAAAATAGGCTG 57.053 39.130 0.00 0.00 0.00 4.85
4216 4258 5.049405 CGTTTCAGACAACTCAAAATAGGCT 60.049 40.000 0.00 0.00 0.00 4.58
4217 4259 5.049680 TCGTTTCAGACAACTCAAAATAGGC 60.050 40.000 0.00 0.00 0.00 3.93
4218 4260 6.202954 AGTCGTTTCAGACAACTCAAAATAGG 59.797 38.462 0.00 0.00 43.24 2.57
4219 4261 7.178712 AGTCGTTTCAGACAACTCAAAATAG 57.821 36.000 0.00 0.00 43.24 1.73
4220 4262 7.548196 AAGTCGTTTCAGACAACTCAAAATA 57.452 32.000 0.00 0.00 43.24 1.40
4221 4263 6.436843 AAGTCGTTTCAGACAACTCAAAAT 57.563 33.333 0.00 0.00 43.24 1.82
4222 4264 5.873179 AAGTCGTTTCAGACAACTCAAAA 57.127 34.783 0.00 0.00 43.24 2.44
4223 4265 8.651391 TTATAAGTCGTTTCAGACAACTCAAA 57.349 30.769 0.00 0.00 43.24 2.69
4224 4266 8.651391 TTTATAAGTCGTTTCAGACAACTCAA 57.349 30.769 0.00 0.00 43.24 3.02
4225 4267 8.651391 TTTTATAAGTCGTTTCAGACAACTCA 57.349 30.769 0.00 0.00 43.24 3.41
4226 4268 8.762426 ACTTTTATAAGTCGTTTCAGACAACTC 58.238 33.333 0.00 0.00 40.60 3.01
4227 4269 8.548721 CACTTTTATAAGTCGTTTCAGACAACT 58.451 33.333 0.00 0.00 42.67 3.16
4228 4270 8.545420 TCACTTTTATAAGTCGTTTCAGACAAC 58.455 33.333 0.00 0.00 42.67 3.32
4229 4271 8.651391 TCACTTTTATAAGTCGTTTCAGACAA 57.349 30.769 0.00 0.00 42.67 3.18
4230 4272 8.545420 GTTCACTTTTATAAGTCGTTTCAGACA 58.455 33.333 0.00 0.00 42.67 3.41
4231 4273 7.734726 CGTTCACTTTTATAAGTCGTTTCAGAC 59.265 37.037 0.00 0.00 42.67 3.51
4232 4274 7.095940 CCGTTCACTTTTATAAGTCGTTTCAGA 60.096 37.037 0.00 0.00 42.67 3.27
4233 4275 7.007697 CCGTTCACTTTTATAAGTCGTTTCAG 58.992 38.462 0.00 0.00 42.67 3.02
4234 4276 6.700960 TCCGTTCACTTTTATAAGTCGTTTCA 59.299 34.615 0.00 0.00 42.67 2.69
4235 4277 7.109006 TCCGTTCACTTTTATAAGTCGTTTC 57.891 36.000 0.00 0.00 42.67 2.78
4236 4278 6.146673 CCTCCGTTCACTTTTATAAGTCGTTT 59.853 38.462 0.00 0.00 42.67 3.60
4237 4279 5.636543 CCTCCGTTCACTTTTATAAGTCGTT 59.363 40.000 0.00 0.00 42.67 3.85
4238 4280 5.166398 CCTCCGTTCACTTTTATAAGTCGT 58.834 41.667 0.00 0.00 42.67 4.34
4239 4281 4.565564 CCCTCCGTTCACTTTTATAAGTCG 59.434 45.833 0.00 0.00 42.67 4.18
4240 4282 5.727434 TCCCTCCGTTCACTTTTATAAGTC 58.273 41.667 0.00 0.00 42.67 3.01
4241 4283 5.247792 ACTCCCTCCGTTCACTTTTATAAGT 59.752 40.000 0.00 0.00 45.40 2.24
4242 4284 5.731591 ACTCCCTCCGTTCACTTTTATAAG 58.268 41.667 0.00 0.00 37.40 1.73
4243 4285 5.750352 ACTCCCTCCGTTCACTTTTATAA 57.250 39.130 0.00 0.00 0.00 0.98
4244 4286 6.608405 TCATACTCCCTCCGTTCACTTTTATA 59.392 38.462 0.00 0.00 0.00 0.98
4245 4287 5.424252 TCATACTCCCTCCGTTCACTTTTAT 59.576 40.000 0.00 0.00 0.00 1.40
4246 4288 4.773674 TCATACTCCCTCCGTTCACTTTTA 59.226 41.667 0.00 0.00 0.00 1.52
4247 4289 3.581332 TCATACTCCCTCCGTTCACTTTT 59.419 43.478 0.00 0.00 0.00 2.27
4248 4290 3.170717 TCATACTCCCTCCGTTCACTTT 58.829 45.455 0.00 0.00 0.00 2.66
4249 4291 2.761208 CTCATACTCCCTCCGTTCACTT 59.239 50.000 0.00 0.00 0.00 3.16
4250 4292 2.291670 ACTCATACTCCCTCCGTTCACT 60.292 50.000 0.00 0.00 0.00 3.41
4251 4293 2.100989 ACTCATACTCCCTCCGTTCAC 58.899 52.381 0.00 0.00 0.00 3.18
4252 4294 2.526888 ACTCATACTCCCTCCGTTCA 57.473 50.000 0.00 0.00 0.00 3.18
4253 4295 3.889520 AAACTCATACTCCCTCCGTTC 57.110 47.619 0.00 0.00 0.00 3.95
4254 4296 4.635699 AAAAACTCATACTCCCTCCGTT 57.364 40.909 0.00 0.00 0.00 4.44
4255 4297 4.081254 GGTAAAAACTCATACTCCCTCCGT 60.081 45.833 0.00 0.00 0.00 4.69
4256 4298 4.081309 TGGTAAAAACTCATACTCCCTCCG 60.081 45.833 0.00 0.00 0.00 4.63
4257 4299 5.183969 GTGGTAAAAACTCATACTCCCTCC 58.816 45.833 0.00 0.00 0.00 4.30
4258 4300 5.801380 TGTGGTAAAAACTCATACTCCCTC 58.199 41.667 0.00 0.00 0.00 4.30
4259 4301 5.836024 TGTGGTAAAAACTCATACTCCCT 57.164 39.130 0.00 0.00 0.00 4.20
4260 4302 6.657541 TGATTGTGGTAAAAACTCATACTCCC 59.342 38.462 0.00 0.00 0.00 4.30
4261 4303 7.361799 GGTGATTGTGGTAAAAACTCATACTCC 60.362 40.741 0.00 0.00 0.00 3.85
4262 4304 7.361799 GGGTGATTGTGGTAAAAACTCATACTC 60.362 40.741 0.00 0.00 0.00 2.59
4263 4305 6.433093 GGGTGATTGTGGTAAAAACTCATACT 59.567 38.462 0.00 0.00 0.00 2.12
4264 4306 6.617879 GGGTGATTGTGGTAAAAACTCATAC 58.382 40.000 0.00 0.00 0.00 2.39
4284 4326 4.131649 TGGTACAATTGATAGACGGGTG 57.868 45.455 13.59 0.00 31.92 4.61
4308 4350 1.140052 CTTGGGTCGCCATGTATACCA 59.860 52.381 0.00 0.77 33.46 3.25
4359 4402 0.616395 TCAATGTCTAGCCCGGGTGA 60.616 55.000 24.63 15.39 0.00 4.02
4365 4408 2.359900 CACCAAGTCAATGTCTAGCCC 58.640 52.381 0.00 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.