Multiple sequence alignment - TraesCS1A01G201200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G201200 chr1A 100.000 3466 0 0 1 3466 362196879 362193414 0.000000e+00 6401
1 TraesCS1A01G201200 chr1A 93.590 156 5 1 1 151 530284993 530284838 9.680000e-56 228
2 TraesCS1A01G201200 chr1A 92.994 157 6 1 1 152 406669929 406670085 1.250000e-54 224
3 TraesCS1A01G201200 chr1A 91.579 95 7 1 2678 2772 362194094 362194001 2.810000e-26 130
4 TraesCS1A01G201200 chr1A 91.579 95 7 1 2786 2879 362194202 362194108 2.810000e-26 130
5 TraesCS1A01G201200 chr1D 95.859 2777 81 9 719 3466 289780031 289777260 0.000000e+00 4460
6 TraesCS1A01G201200 chr1D 93.701 127 6 2 552 677 289780261 289780136 4.570000e-44 189
7 TraesCS1A01G201200 chr1D 91.579 95 7 1 2678 2772 289777946 289777853 2.810000e-26 130
8 TraesCS1A01G201200 chr1B 95.090 2770 110 11 719 3466 391072260 391069495 0.000000e+00 4338
9 TraesCS1A01G201200 chr5D 94.231 156 4 1 1 151 563375897 563375742 2.080000e-57 233
10 TraesCS1A01G201200 chr3D 93.125 160 6 1 1 155 576636663 576636504 2.690000e-56 230
11 TraesCS1A01G201200 chr3D 92.025 163 7 2 1 158 31673001 31673162 1.250000e-54 224
12 TraesCS1A01G201200 chrUn 92.949 156 6 1 1 151 110850104 110850259 4.500000e-54 222
13 TraesCS1A01G201200 chr7D 92.949 156 6 1 1 151 217609054 217609209 4.500000e-54 222
14 TraesCS1A01G201200 chr6D 92.949 156 6 1 1 151 308545153 308545308 4.500000e-54 222
15 TraesCS1A01G201200 chr4D 92.949 156 6 1 1 151 335017997 335018152 4.500000e-54 222


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G201200 chr1A 362193414 362196879 3465 True 2220.333333 6401 94.386 1 3466 3 chr1A.!!$R2 3465
1 TraesCS1A01G201200 chr1D 289777260 289780261 3001 True 1593.000000 4460 93.713 552 3466 3 chr1D.!!$R1 2914
2 TraesCS1A01G201200 chr1B 391069495 391072260 2765 True 4338.000000 4338 95.090 719 3466 1 chr1B.!!$R1 2747

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
510 511 0.037697 CCCGTTCTGTTCGTGGATGA 60.038 55.0 0.0 0.0 0.00 2.92 F
1825 1913 0.107993 CATGCTCCATGTCACCGACT 60.108 55.0 0.0 0.0 37.12 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2308 2396 0.103208 ACGCAACCAAAATGCCGAAA 59.897 45.0 0.0 0.0 40.72 3.46 R
3244 3342 0.815734 GCTACTCGGCAGTTCCACTA 59.184 55.0 0.0 0.0 33.62 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.493035 TCGTGAAGGTGTACGACTACA 58.507 47.619 0.00 0.00 43.54 2.74
21 22 3.076621 TCGTGAAGGTGTACGACTACAT 58.923 45.455 0.00 0.00 43.54 2.29
22 23 3.125829 TCGTGAAGGTGTACGACTACATC 59.874 47.826 0.00 0.00 43.54 3.06
23 24 3.120095 CGTGAAGGTGTACGACTACATCA 60.120 47.826 0.00 0.00 42.54 3.07
24 25 4.614306 CGTGAAGGTGTACGACTACATCAA 60.614 45.833 0.00 0.00 42.54 2.57
25 26 4.620184 GTGAAGGTGTACGACTACATCAAC 59.380 45.833 0.00 0.00 36.55 3.18
26 27 3.863142 AGGTGTACGACTACATCAACC 57.137 47.619 0.00 0.00 36.55 3.77
27 28 2.163010 AGGTGTACGACTACATCAACCG 59.837 50.000 0.00 0.00 36.55 4.44
28 29 1.916000 GTGTACGACTACATCAACCGC 59.084 52.381 0.00 0.00 35.28 5.68
29 30 1.186030 GTACGACTACATCAACCGCG 58.814 55.000 0.00 0.00 0.00 6.46
30 31 0.804364 TACGACTACATCAACCGCGT 59.196 50.000 4.92 0.00 0.00 6.01
31 32 0.038892 ACGACTACATCAACCGCGTT 60.039 50.000 4.92 0.00 0.00 4.84
32 33 0.365523 CGACTACATCAACCGCGTTG 59.634 55.000 4.92 10.14 43.99 4.10
46 47 3.198680 CGTTGATAAACGCTTCCGC 57.801 52.632 1.55 0.00 39.43 5.54
47 48 0.719465 CGTTGATAAACGCTTCCGCT 59.281 50.000 1.55 0.00 39.43 5.52
48 49 1.127951 CGTTGATAAACGCTTCCGCTT 59.872 47.619 1.55 0.00 39.43 4.68
49 50 2.346244 CGTTGATAAACGCTTCCGCTTA 59.654 45.455 1.55 0.00 39.43 3.09
50 51 3.667050 GTTGATAAACGCTTCCGCTTAC 58.333 45.455 0.00 0.00 38.22 2.34
51 52 1.921887 TGATAAACGCTTCCGCTTACG 59.078 47.619 0.00 0.00 38.22 3.18
52 53 2.187707 GATAAACGCTTCCGCTTACGA 58.812 47.619 0.00 0.00 43.93 3.43
53 54 2.282701 TAAACGCTTCCGCTTACGAT 57.717 45.000 0.00 0.00 43.93 3.73
54 55 0.997196 AAACGCTTCCGCTTACGATC 59.003 50.000 0.00 0.00 43.93 3.69
55 56 0.172803 AACGCTTCCGCTTACGATCT 59.827 50.000 0.00 0.00 43.93 2.75
56 57 1.019673 ACGCTTCCGCTTACGATCTA 58.980 50.000 0.00 0.00 43.93 1.98
57 58 1.268437 ACGCTTCCGCTTACGATCTAC 60.268 52.381 0.00 0.00 43.93 2.59
58 59 4.735890 ACGCTTCCGCTTACGATCTACG 62.736 54.545 0.00 0.00 43.93 3.51
59 60 1.003116 GCTTCCGCTTACGATCTACGA 60.003 52.381 0.00 0.00 45.77 3.43
60 61 2.906153 CTTCCGCTTACGATCTACGAG 58.094 52.381 0.00 0.00 45.77 4.18
61 62 1.224075 TCCGCTTACGATCTACGAGG 58.776 55.000 0.00 0.00 45.77 4.63
62 63 0.237761 CCGCTTACGATCTACGAGGG 59.762 60.000 0.00 0.00 45.77 4.30
63 64 0.942962 CGCTTACGATCTACGAGGGT 59.057 55.000 0.00 0.00 45.77 4.34
64 65 2.138320 CGCTTACGATCTACGAGGGTA 58.862 52.381 0.00 0.00 45.77 3.69
65 66 2.096516 CGCTTACGATCTACGAGGGTAC 60.097 54.545 0.00 0.00 45.77 3.34
66 67 2.096516 GCTTACGATCTACGAGGGTACG 60.097 54.545 0.00 0.00 45.77 3.67
68 69 2.890808 ACGATCTACGAGGGTACGTA 57.109 50.000 0.00 0.00 44.72 3.57
75 76 1.896220 ACGAGGGTACGTAGACAACA 58.104 50.000 0.00 0.00 44.72 3.33
76 77 1.537202 ACGAGGGTACGTAGACAACAC 59.463 52.381 0.00 0.00 44.72 3.32
77 78 1.808945 CGAGGGTACGTAGACAACACT 59.191 52.381 0.00 0.00 0.00 3.55
78 79 2.159599 CGAGGGTACGTAGACAACACTC 60.160 54.545 7.48 7.48 39.74 3.51
79 80 3.080319 GAGGGTACGTAGACAACACTCT 58.920 50.000 9.87 0.00 39.95 3.24
80 81 3.080319 AGGGTACGTAGACAACACTCTC 58.920 50.000 0.00 0.00 0.00 3.20
81 82 2.163211 GGGTACGTAGACAACACTCTCC 59.837 54.545 0.00 0.00 0.00 3.71
82 83 2.163211 GGTACGTAGACAACACTCTCCC 59.837 54.545 0.00 0.00 0.00 4.30
83 84 2.289592 ACGTAGACAACACTCTCCCT 57.710 50.000 0.00 0.00 0.00 4.20
84 85 2.595238 ACGTAGACAACACTCTCCCTT 58.405 47.619 0.00 0.00 0.00 3.95
85 86 2.557490 ACGTAGACAACACTCTCCCTTC 59.443 50.000 0.00 0.00 0.00 3.46
86 87 2.820787 CGTAGACAACACTCTCCCTTCT 59.179 50.000 0.00 0.00 0.00 2.85
87 88 3.119779 CGTAGACAACACTCTCCCTTCTC 60.120 52.174 0.00 0.00 0.00 2.87
88 89 1.889829 AGACAACACTCTCCCTTCTCG 59.110 52.381 0.00 0.00 0.00 4.04
89 90 1.614413 GACAACACTCTCCCTTCTCGT 59.386 52.381 0.00 0.00 0.00 4.18
90 91 2.036089 GACAACACTCTCCCTTCTCGTT 59.964 50.000 0.00 0.00 0.00 3.85
91 92 2.224066 ACAACACTCTCCCTTCTCGTTG 60.224 50.000 0.00 0.00 38.51 4.10
92 93 1.705873 ACACTCTCCCTTCTCGTTGT 58.294 50.000 0.00 0.00 0.00 3.32
93 94 2.040178 ACACTCTCCCTTCTCGTTGTT 58.960 47.619 0.00 0.00 0.00 2.83
94 95 3.228453 ACACTCTCCCTTCTCGTTGTTA 58.772 45.455 0.00 0.00 0.00 2.41
95 96 3.833070 ACACTCTCCCTTCTCGTTGTTAT 59.167 43.478 0.00 0.00 0.00 1.89
96 97 4.177026 CACTCTCCCTTCTCGTTGTTATG 58.823 47.826 0.00 0.00 0.00 1.90
97 98 3.190874 CTCTCCCTTCTCGTTGTTATGC 58.809 50.000 0.00 0.00 0.00 3.14
98 99 2.565391 TCTCCCTTCTCGTTGTTATGCA 59.435 45.455 0.00 0.00 0.00 3.96
99 100 3.197766 TCTCCCTTCTCGTTGTTATGCAT 59.802 43.478 3.79 3.79 0.00 3.96
100 101 3.531538 TCCCTTCTCGTTGTTATGCATC 58.468 45.455 0.19 0.00 0.00 3.91
101 102 3.055458 TCCCTTCTCGTTGTTATGCATCA 60.055 43.478 0.19 0.00 0.00 3.07
102 103 3.063997 CCCTTCTCGTTGTTATGCATCAC 59.936 47.826 0.19 2.46 0.00 3.06
103 104 3.063997 CCTTCTCGTTGTTATGCATCACC 59.936 47.826 0.19 0.00 0.00 4.02
104 105 3.326836 TCTCGTTGTTATGCATCACCA 57.673 42.857 0.19 0.00 0.00 4.17
105 106 3.872696 TCTCGTTGTTATGCATCACCAT 58.127 40.909 0.19 0.00 0.00 3.55
106 107 3.622612 TCTCGTTGTTATGCATCACCATG 59.377 43.478 0.19 0.00 0.00 3.66
107 108 3.604582 TCGTTGTTATGCATCACCATGA 58.395 40.909 0.19 2.36 30.57 3.07
108 109 4.198530 TCGTTGTTATGCATCACCATGAT 58.801 39.130 0.19 0.00 37.65 2.45
109 110 4.273235 TCGTTGTTATGCATCACCATGATC 59.727 41.667 0.19 0.00 34.28 2.92
110 111 4.555313 CGTTGTTATGCATCACCATGATCC 60.555 45.833 0.19 0.00 34.28 3.36
111 112 4.442401 TGTTATGCATCACCATGATCCT 57.558 40.909 0.19 0.00 34.28 3.24
112 113 4.139038 TGTTATGCATCACCATGATCCTG 58.861 43.478 0.19 0.00 34.28 3.86
113 114 1.617322 ATGCATCACCATGATCCTGC 58.383 50.000 0.00 0.00 34.28 4.85
114 115 0.816421 TGCATCACCATGATCCTGCG 60.816 55.000 0.00 0.00 34.28 5.18
115 116 0.816825 GCATCACCATGATCCTGCGT 60.817 55.000 0.00 0.00 34.28 5.24
116 117 0.942252 CATCACCATGATCCTGCGTG 59.058 55.000 0.00 10.98 34.28 5.34
117 118 0.543277 ATCACCATGATCCTGCGTGT 59.457 50.000 14.49 0.00 29.59 4.49
118 119 0.391528 TCACCATGATCCTGCGTGTG 60.392 55.000 14.49 8.57 0.00 3.82
119 120 1.746615 ACCATGATCCTGCGTGTGC 60.747 57.895 0.00 0.00 43.20 4.57
156 157 3.023950 TGTTAACCAACACCGCGC 58.976 55.556 0.00 0.00 39.75 6.86
157 158 1.818363 TGTTAACCAACACCGCGCA 60.818 52.632 8.75 0.00 39.75 6.09
158 159 1.369568 GTTAACCAACACCGCGCAC 60.370 57.895 8.75 0.00 34.60 5.34
159 160 2.544698 TTAACCAACACCGCGCACC 61.545 57.895 8.75 0.00 0.00 5.01
210 211 4.072088 CCGCGCGTCAAAGACCAC 62.072 66.667 29.95 0.00 0.00 4.16
211 212 4.072088 CGCGCGTCAAAGACCACC 62.072 66.667 24.19 0.00 0.00 4.61
212 213 2.665185 GCGCGTCAAAGACCACCT 60.665 61.111 8.43 0.00 0.00 4.00
213 214 2.668280 GCGCGTCAAAGACCACCTC 61.668 63.158 8.43 0.00 0.00 3.85
214 215 1.006102 CGCGTCAAAGACCACCTCT 60.006 57.895 0.00 0.00 0.00 3.69
215 216 1.284982 CGCGTCAAAGACCACCTCTG 61.285 60.000 0.00 0.00 0.00 3.35
216 217 1.569479 GCGTCAAAGACCACCTCTGC 61.569 60.000 0.00 0.00 0.00 4.26
217 218 0.951040 CGTCAAAGACCACCTCTGCC 60.951 60.000 0.00 0.00 0.00 4.85
218 219 0.951040 GTCAAAGACCACCTCTGCCG 60.951 60.000 0.00 0.00 0.00 5.69
219 220 2.032681 AAAGACCACCTCTGCCGC 59.967 61.111 0.00 0.00 0.00 6.53
220 221 3.553095 AAAGACCACCTCTGCCGCC 62.553 63.158 0.00 0.00 0.00 6.13
224 225 4.641645 CCACCTCTGCCGCCACAA 62.642 66.667 0.00 0.00 0.00 3.33
225 226 3.052082 CACCTCTGCCGCCACAAG 61.052 66.667 0.00 0.00 0.00 3.16
280 281 3.423154 CCAGTTGCCCGCGAGTTC 61.423 66.667 8.23 0.00 0.00 3.01
281 282 3.423154 CAGTTGCCCGCGAGTTCC 61.423 66.667 8.23 0.00 0.00 3.62
282 283 4.699522 AGTTGCCCGCGAGTTCCC 62.700 66.667 8.23 0.00 0.00 3.97
287 288 3.470888 CCCGCGAGTTCCCCATCT 61.471 66.667 8.23 0.00 0.00 2.90
288 289 2.107141 CCGCGAGTTCCCCATCTC 59.893 66.667 8.23 0.00 0.00 2.75
291 292 2.278857 CGAGTTCCCCATCTCGCG 60.279 66.667 0.00 0.00 44.82 5.87
292 293 2.771639 CGAGTTCCCCATCTCGCGA 61.772 63.158 9.26 9.26 44.82 5.87
293 294 1.066587 GAGTTCCCCATCTCGCGAG 59.933 63.158 30.03 30.03 0.00 5.03
294 295 2.586357 GTTCCCCATCTCGCGAGC 60.586 66.667 30.97 10.76 0.00 5.03
295 296 3.074369 TTCCCCATCTCGCGAGCA 61.074 61.111 30.97 19.58 0.00 4.26
296 297 2.655073 TTCCCCATCTCGCGAGCAA 61.655 57.895 30.97 15.89 0.00 3.91
297 298 2.125147 CCCCATCTCGCGAGCAAA 60.125 61.111 30.97 15.08 0.00 3.68
298 299 2.464459 CCCCATCTCGCGAGCAAAC 61.464 63.158 30.97 0.00 0.00 2.93
299 300 1.741401 CCCATCTCGCGAGCAAACA 60.741 57.895 30.97 14.27 0.00 2.83
300 301 1.091771 CCCATCTCGCGAGCAAACAT 61.092 55.000 30.97 16.03 0.00 2.71
301 302 0.302890 CCATCTCGCGAGCAAACATC 59.697 55.000 30.97 0.00 0.00 3.06
302 303 0.302890 CATCTCGCGAGCAAACATCC 59.697 55.000 30.97 0.00 0.00 3.51
303 304 1.148157 ATCTCGCGAGCAAACATCCG 61.148 55.000 30.97 4.68 0.00 4.18
304 305 3.425938 CTCGCGAGCAAACATCCGC 62.426 63.158 25.07 0.00 43.68 5.54
305 306 4.520846 CGCGAGCAAACATCCGCC 62.521 66.667 0.00 0.00 44.18 6.13
306 307 4.520846 GCGAGCAAACATCCGCCG 62.521 66.667 0.00 0.00 41.59 6.46
307 308 2.813474 CGAGCAAACATCCGCCGA 60.813 61.111 0.00 0.00 0.00 5.54
308 309 2.387445 CGAGCAAACATCCGCCGAA 61.387 57.895 0.00 0.00 0.00 4.30
309 310 1.425428 GAGCAAACATCCGCCGAAG 59.575 57.895 0.00 0.00 0.00 3.79
310 311 1.003839 AGCAAACATCCGCCGAAGA 60.004 52.632 0.00 0.00 0.00 2.87
311 312 1.021390 AGCAAACATCCGCCGAAGAG 61.021 55.000 0.00 0.00 0.00 2.85
312 313 1.019278 GCAAACATCCGCCGAAGAGA 61.019 55.000 0.00 0.00 0.00 3.10
313 314 1.002366 CAAACATCCGCCGAAGAGAG 58.998 55.000 0.00 0.00 0.00 3.20
314 315 0.741221 AAACATCCGCCGAAGAGAGC 60.741 55.000 0.00 0.00 0.00 4.09
315 316 1.888436 AACATCCGCCGAAGAGAGCA 61.888 55.000 0.00 0.00 0.00 4.26
316 317 1.068753 CATCCGCCGAAGAGAGCAT 59.931 57.895 0.00 0.00 0.00 3.79
317 318 1.068753 ATCCGCCGAAGAGAGCATG 59.931 57.895 0.00 0.00 0.00 4.06
318 319 2.985512 ATCCGCCGAAGAGAGCATGC 62.986 60.000 10.51 10.51 0.00 4.06
319 320 3.267860 CGCCGAAGAGAGCATGCC 61.268 66.667 15.66 6.03 0.00 4.40
320 321 2.899339 GCCGAAGAGAGCATGCCC 60.899 66.667 15.66 1.16 0.00 5.36
321 322 2.203126 CCGAAGAGAGCATGCCCC 60.203 66.667 15.66 6.84 0.00 5.80
322 323 2.203126 CGAAGAGAGCATGCCCCC 60.203 66.667 15.66 3.99 0.00 5.40
349 350 4.680237 CTTCGCACAGGACCGGCA 62.680 66.667 0.00 0.00 0.00 5.69
350 351 4.243008 TTCGCACAGGACCGGCAA 62.243 61.111 0.00 0.00 0.00 4.52
351 352 3.545124 TTCGCACAGGACCGGCAAT 62.545 57.895 0.00 0.00 0.00 3.56
352 353 3.803082 CGCACAGGACCGGCAATG 61.803 66.667 0.00 0.00 0.00 2.82
353 354 3.443045 GCACAGGACCGGCAATGG 61.443 66.667 0.00 0.00 0.00 3.16
354 355 3.443045 CACAGGACCGGCAATGGC 61.443 66.667 0.00 0.00 40.13 4.40
363 364 3.797353 GGCAATGGCGAGGGAGGA 61.797 66.667 0.00 0.00 42.47 3.71
364 365 2.203126 GCAATGGCGAGGGAGGAG 60.203 66.667 0.00 0.00 0.00 3.69
365 366 2.735772 GCAATGGCGAGGGAGGAGA 61.736 63.158 0.00 0.00 0.00 3.71
366 367 1.907739 CAATGGCGAGGGAGGAGAA 59.092 57.895 0.00 0.00 0.00 2.87
367 368 0.179062 CAATGGCGAGGGAGGAGAAG 60.179 60.000 0.00 0.00 0.00 2.85
368 369 1.341156 AATGGCGAGGGAGGAGAAGG 61.341 60.000 0.00 0.00 0.00 3.46
369 370 3.157949 GGCGAGGGAGGAGAAGGG 61.158 72.222 0.00 0.00 0.00 3.95
370 371 3.157949 GCGAGGGAGGAGAAGGGG 61.158 72.222 0.00 0.00 0.00 4.79
371 372 2.444895 CGAGGGAGGAGAAGGGGG 60.445 72.222 0.00 0.00 0.00 5.40
394 395 2.676471 GGAGCGGCCCATGTTTGT 60.676 61.111 0.00 0.00 0.00 2.83
395 396 2.700773 GGAGCGGCCCATGTTTGTC 61.701 63.158 0.00 0.00 0.00 3.18
396 397 1.675641 GAGCGGCCCATGTTTGTCT 60.676 57.895 0.00 0.00 0.00 3.41
397 398 1.228552 AGCGGCCCATGTTTGTCTT 60.229 52.632 0.00 0.00 0.00 3.01
398 399 0.827507 AGCGGCCCATGTTTGTCTTT 60.828 50.000 0.00 0.00 0.00 2.52
399 400 0.885196 GCGGCCCATGTTTGTCTTTA 59.115 50.000 0.00 0.00 0.00 1.85
400 401 1.402325 GCGGCCCATGTTTGTCTTTAC 60.402 52.381 0.00 0.00 0.00 2.01
401 402 1.883275 CGGCCCATGTTTGTCTTTACA 59.117 47.619 0.00 0.00 0.00 2.41
402 403 2.491693 CGGCCCATGTTTGTCTTTACAT 59.508 45.455 0.00 0.00 34.97 2.29
403 404 3.692101 CGGCCCATGTTTGTCTTTACATA 59.308 43.478 0.00 0.00 34.97 2.29
404 405 4.156922 CGGCCCATGTTTGTCTTTACATAA 59.843 41.667 0.00 0.00 34.97 1.90
405 406 5.336055 CGGCCCATGTTTGTCTTTACATAAA 60.336 40.000 0.00 0.00 34.97 1.40
406 407 6.627065 CGGCCCATGTTTGTCTTTACATAAAT 60.627 38.462 0.00 0.00 34.97 1.40
407 408 7.102993 GGCCCATGTTTGTCTTTACATAAATT 58.897 34.615 0.00 0.00 34.97 1.82
408 409 7.606073 GGCCCATGTTTGTCTTTACATAAATTT 59.394 33.333 0.00 0.00 34.97 1.82
409 410 8.655970 GCCCATGTTTGTCTTTACATAAATTTC 58.344 33.333 0.00 0.00 34.97 2.17
410 411 9.703892 CCCATGTTTGTCTTTACATAAATTTCA 57.296 29.630 0.00 0.00 34.97 2.69
414 415 9.619316 TGTTTGTCTTTACATAAATTTCATCCG 57.381 29.630 0.00 0.00 34.97 4.18
415 416 9.834628 GTTTGTCTTTACATAAATTTCATCCGA 57.165 29.630 0.00 0.00 34.97 4.55
420 421 9.515020 TCTTTACATAAATTTCATCCGATTTGC 57.485 29.630 0.00 0.00 0.00 3.68
421 422 9.520204 CTTTACATAAATTTCATCCGATTTGCT 57.480 29.630 0.00 0.00 0.00 3.91
422 423 8.854979 TTACATAAATTTCATCCGATTTGCTG 57.145 30.769 0.00 0.00 0.00 4.41
423 424 7.099266 ACATAAATTTCATCCGATTTGCTGA 57.901 32.000 0.00 0.00 0.00 4.26
424 425 7.546358 ACATAAATTTCATCCGATTTGCTGAA 58.454 30.769 0.00 0.00 0.00 3.02
425 426 8.034215 ACATAAATTTCATCCGATTTGCTGAAA 58.966 29.630 0.00 0.00 40.66 2.69
426 427 8.871862 CATAAATTTCATCCGATTTGCTGAAAA 58.128 29.630 0.00 0.00 40.03 2.29
427 428 7.727331 AAATTTCATCCGATTTGCTGAAAAA 57.273 28.000 0.00 0.00 40.03 1.94
428 429 6.956299 ATTTCATCCGATTTGCTGAAAAAG 57.044 33.333 0.00 0.00 40.03 2.27
429 430 5.703978 TTCATCCGATTTGCTGAAAAAGA 57.296 34.783 0.00 0.00 0.00 2.52
430 431 5.300969 TCATCCGATTTGCTGAAAAAGAG 57.699 39.130 0.00 0.00 0.00 2.85
431 432 4.761739 TCATCCGATTTGCTGAAAAAGAGT 59.238 37.500 0.00 0.00 0.00 3.24
432 433 5.241506 TCATCCGATTTGCTGAAAAAGAGTT 59.758 36.000 0.00 0.00 0.00 3.01
433 434 5.514274 TCCGATTTGCTGAAAAAGAGTTT 57.486 34.783 0.00 0.00 0.00 2.66
434 435 5.280945 TCCGATTTGCTGAAAAAGAGTTTG 58.719 37.500 0.00 0.00 0.00 2.93
435 436 4.084900 CCGATTTGCTGAAAAAGAGTTTGC 60.085 41.667 0.00 0.00 0.00 3.68
436 437 4.503734 CGATTTGCTGAAAAAGAGTTTGCA 59.496 37.500 0.00 0.00 31.07 4.08
437 438 5.005586 CGATTTGCTGAAAAAGAGTTTGCAA 59.994 36.000 0.00 0.00 31.54 4.08
438 439 6.292488 CGATTTGCTGAAAAAGAGTTTGCAAT 60.292 34.615 0.00 0.00 38.46 3.56
439 440 5.721876 TTGCTGAAAAAGAGTTTGCAATG 57.278 34.783 0.00 0.00 31.54 2.82
440 441 3.556775 TGCTGAAAAAGAGTTTGCAATGC 59.443 39.130 0.00 0.00 31.54 3.56
441 442 3.556775 GCTGAAAAAGAGTTTGCAATGCA 59.443 39.130 2.72 2.72 31.54 3.96
442 443 4.318546 GCTGAAAAAGAGTTTGCAATGCAG 60.319 41.667 8.31 0.00 40.61 4.41
443 444 4.121317 TGAAAAAGAGTTTGCAATGCAGG 58.879 39.130 8.31 0.00 40.61 4.85
444 445 3.825143 AAAAGAGTTTGCAATGCAGGT 57.175 38.095 8.31 0.00 40.61 4.00
445 446 4.935352 AAAAGAGTTTGCAATGCAGGTA 57.065 36.364 8.31 0.00 40.61 3.08
446 447 3.923017 AAGAGTTTGCAATGCAGGTAC 57.077 42.857 8.31 8.42 40.61 3.34
447 448 2.162681 AGAGTTTGCAATGCAGGTACC 58.837 47.619 8.31 2.73 40.61 3.34
448 449 2.162681 GAGTTTGCAATGCAGGTACCT 58.837 47.619 9.21 9.21 40.61 3.08
449 450 3.009033 AGAGTTTGCAATGCAGGTACCTA 59.991 43.478 15.80 0.00 40.61 3.08
450 451 3.347216 AGTTTGCAATGCAGGTACCTAG 58.653 45.455 15.80 10.42 40.61 3.02
451 452 3.081804 GTTTGCAATGCAGGTACCTAGT 58.918 45.455 15.80 0.00 40.61 2.57
452 453 2.401583 TGCAATGCAGGTACCTAGTG 57.598 50.000 15.80 11.00 33.32 2.74
453 454 1.628340 TGCAATGCAGGTACCTAGTGT 59.372 47.619 15.80 0.00 33.32 3.55
454 455 2.039746 TGCAATGCAGGTACCTAGTGTT 59.960 45.455 15.80 4.68 33.32 3.32
455 456 2.420022 GCAATGCAGGTACCTAGTGTTG 59.580 50.000 15.80 16.95 0.00 3.33
456 457 3.868369 GCAATGCAGGTACCTAGTGTTGA 60.868 47.826 15.80 0.00 0.00 3.18
457 458 4.323417 CAATGCAGGTACCTAGTGTTGAA 58.677 43.478 15.80 0.00 0.00 2.69
458 459 4.844349 ATGCAGGTACCTAGTGTTGAAT 57.156 40.909 15.80 0.00 0.00 2.57
459 460 3.937814 TGCAGGTACCTAGTGTTGAATG 58.062 45.455 15.80 0.00 0.00 2.67
460 461 3.270877 GCAGGTACCTAGTGTTGAATGG 58.729 50.000 15.80 0.00 0.00 3.16
461 462 3.270877 CAGGTACCTAGTGTTGAATGGC 58.729 50.000 15.80 0.00 0.00 4.40
462 463 2.093658 AGGTACCTAGTGTTGAATGGCG 60.094 50.000 14.41 0.00 0.00 5.69
463 464 2.354403 GGTACCTAGTGTTGAATGGCGT 60.354 50.000 4.06 0.00 0.00 5.68
464 465 2.094762 ACCTAGTGTTGAATGGCGTC 57.905 50.000 0.00 0.00 0.00 5.19
465 466 1.623811 ACCTAGTGTTGAATGGCGTCT 59.376 47.619 0.00 0.00 0.00 4.18
466 467 2.038557 ACCTAGTGTTGAATGGCGTCTT 59.961 45.455 0.00 0.00 0.00 3.01
467 468 3.259876 ACCTAGTGTTGAATGGCGTCTTA 59.740 43.478 0.00 0.00 0.00 2.10
468 469 4.081087 ACCTAGTGTTGAATGGCGTCTTAT 60.081 41.667 0.00 0.00 0.00 1.73
469 470 4.508124 CCTAGTGTTGAATGGCGTCTTATC 59.492 45.833 0.00 0.00 0.00 1.75
470 471 2.930040 AGTGTTGAATGGCGTCTTATCG 59.070 45.455 0.00 0.00 0.00 2.92
471 472 2.671396 GTGTTGAATGGCGTCTTATCGT 59.329 45.455 0.00 0.00 0.00 3.73
472 473 3.861113 GTGTTGAATGGCGTCTTATCGTA 59.139 43.478 0.00 0.00 0.00 3.43
473 474 4.506654 GTGTTGAATGGCGTCTTATCGTAT 59.493 41.667 0.00 0.00 0.00 3.06
474 475 4.743151 TGTTGAATGGCGTCTTATCGTATC 59.257 41.667 0.00 0.00 0.00 2.24
475 476 3.909430 TGAATGGCGTCTTATCGTATCC 58.091 45.455 0.00 0.00 0.00 2.59
476 477 2.631418 ATGGCGTCTTATCGTATCCG 57.369 50.000 0.00 0.00 0.00 4.18
477 478 1.311859 TGGCGTCTTATCGTATCCGT 58.688 50.000 0.00 0.00 35.01 4.69
478 479 1.002142 TGGCGTCTTATCGTATCCGTG 60.002 52.381 0.00 0.00 35.01 4.94
479 480 1.002033 GGCGTCTTATCGTATCCGTGT 60.002 52.381 0.00 0.00 35.01 4.49
480 481 2.305291 GCGTCTTATCGTATCCGTGTC 58.695 52.381 0.00 0.00 35.01 3.67
481 482 2.913613 CGTCTTATCGTATCCGTGTCC 58.086 52.381 0.00 0.00 35.01 4.02
482 483 2.547211 CGTCTTATCGTATCCGTGTCCT 59.453 50.000 0.00 0.00 35.01 3.85
483 484 3.363772 CGTCTTATCGTATCCGTGTCCTC 60.364 52.174 0.00 0.00 35.01 3.71
484 485 2.804527 TCTTATCGTATCCGTGTCCTCG 59.195 50.000 0.00 0.00 35.01 4.63
493 494 3.357504 CGTGTCCTCGGATTAACCC 57.642 57.895 0.00 0.00 34.64 4.11
503 504 1.657094 CGGATTAACCCGTTCTGTTCG 59.343 52.381 0.00 0.00 44.23 3.95
504 505 2.691927 GGATTAACCCGTTCTGTTCGT 58.308 47.619 0.00 0.00 0.00 3.85
505 506 2.414138 GGATTAACCCGTTCTGTTCGTG 59.586 50.000 0.00 0.00 0.00 4.35
506 507 1.868469 TTAACCCGTTCTGTTCGTGG 58.132 50.000 0.00 0.00 0.00 4.94
507 508 1.039068 TAACCCGTTCTGTTCGTGGA 58.961 50.000 0.00 0.00 0.00 4.02
508 509 0.395312 AACCCGTTCTGTTCGTGGAT 59.605 50.000 0.00 0.00 0.00 3.41
509 510 0.320421 ACCCGTTCTGTTCGTGGATG 60.320 55.000 0.00 0.00 0.00 3.51
510 511 0.037697 CCCGTTCTGTTCGTGGATGA 60.038 55.000 0.00 0.00 0.00 2.92
511 512 1.606994 CCCGTTCTGTTCGTGGATGAA 60.607 52.381 0.00 0.00 0.00 2.57
512 513 2.346803 CCGTTCTGTTCGTGGATGAAT 58.653 47.619 0.00 0.00 0.00 2.57
513 514 2.094258 CCGTTCTGTTCGTGGATGAATG 59.906 50.000 0.00 0.00 0.00 2.67
514 515 2.474526 CGTTCTGTTCGTGGATGAATGC 60.475 50.000 0.00 0.00 0.00 3.56
515 516 2.470983 TCTGTTCGTGGATGAATGCA 57.529 45.000 0.00 0.00 0.00 3.96
516 517 2.349590 TCTGTTCGTGGATGAATGCAG 58.650 47.619 0.00 0.00 0.00 4.41
517 518 1.399440 CTGTTCGTGGATGAATGCAGG 59.601 52.381 0.00 0.00 35.70 4.85
518 519 1.003003 TGTTCGTGGATGAATGCAGGA 59.997 47.619 3.46 3.46 40.40 3.86
519 520 1.667724 GTTCGTGGATGAATGCAGGAG 59.332 52.381 7.17 0.00 42.38 3.69
520 521 1.194218 TCGTGGATGAATGCAGGAGA 58.806 50.000 3.46 0.00 37.94 3.71
521 522 1.554617 TCGTGGATGAATGCAGGAGAA 59.445 47.619 3.46 0.00 37.94 2.87
522 523 2.027285 TCGTGGATGAATGCAGGAGAAA 60.027 45.455 3.46 0.00 37.94 2.52
523 524 2.749076 CGTGGATGAATGCAGGAGAAAA 59.251 45.455 0.00 0.00 36.32 2.29
524 525 3.379372 CGTGGATGAATGCAGGAGAAAAT 59.621 43.478 0.00 0.00 36.32 1.82
525 526 4.142315 CGTGGATGAATGCAGGAGAAAATT 60.142 41.667 0.00 0.00 36.32 1.82
526 527 5.622914 CGTGGATGAATGCAGGAGAAAATTT 60.623 40.000 0.00 0.00 36.32 1.82
527 528 6.404623 CGTGGATGAATGCAGGAGAAAATTTA 60.405 38.462 0.00 0.00 36.32 1.40
528 529 7.322664 GTGGATGAATGCAGGAGAAAATTTAA 58.677 34.615 0.00 0.00 0.00 1.52
529 530 7.490402 GTGGATGAATGCAGGAGAAAATTTAAG 59.510 37.037 0.00 0.00 0.00 1.85
530 531 7.396907 TGGATGAATGCAGGAGAAAATTTAAGA 59.603 33.333 0.00 0.00 0.00 2.10
531 532 7.919621 GGATGAATGCAGGAGAAAATTTAAGAG 59.080 37.037 0.00 0.00 0.00 2.85
532 533 7.765695 TGAATGCAGGAGAAAATTTAAGAGT 57.234 32.000 0.00 0.00 0.00 3.24
533 534 8.181904 TGAATGCAGGAGAAAATTTAAGAGTT 57.818 30.769 0.00 0.00 0.00 3.01
534 535 8.084073 TGAATGCAGGAGAAAATTTAAGAGTTG 58.916 33.333 0.00 0.00 0.00 3.16
535 536 5.772521 TGCAGGAGAAAATTTAAGAGTTGC 58.227 37.500 0.00 0.00 0.00 4.17
536 537 5.536161 TGCAGGAGAAAATTTAAGAGTTGCT 59.464 36.000 11.92 0.00 0.00 3.91
537 538 6.714810 TGCAGGAGAAAATTTAAGAGTTGCTA 59.285 34.615 11.92 0.00 0.00 3.49
538 539 7.024171 GCAGGAGAAAATTTAAGAGTTGCTAC 58.976 38.462 0.00 0.00 0.00 3.58
539 540 7.308589 GCAGGAGAAAATTTAAGAGTTGCTACA 60.309 37.037 0.13 0.00 22.81 2.74
540 541 8.017946 CAGGAGAAAATTTAAGAGTTGCTACAC 58.982 37.037 0.13 0.00 22.81 2.90
541 542 7.015877 GGAGAAAATTTAAGAGTTGCTACACG 58.984 38.462 0.13 0.00 0.00 4.49
542 543 7.095355 GGAGAAAATTTAAGAGTTGCTACACGA 60.095 37.037 0.13 0.00 0.00 4.35
543 544 8.324163 AGAAAATTTAAGAGTTGCTACACGAT 57.676 30.769 0.13 0.00 0.00 3.73
544 545 8.443937 AGAAAATTTAAGAGTTGCTACACGATC 58.556 33.333 0.13 0.00 0.00 3.69
545 546 7.907214 AAATTTAAGAGTTGCTACACGATCT 57.093 32.000 0.13 0.00 0.00 2.75
546 547 8.997621 AAATTTAAGAGTTGCTACACGATCTA 57.002 30.769 0.13 0.00 0.00 1.98
547 548 8.997621 AATTTAAGAGTTGCTACACGATCTAA 57.002 30.769 0.13 0.00 0.00 2.10
548 549 7.807687 TTTAAGAGTTGCTACACGATCTAAC 57.192 36.000 0.13 0.00 0.00 2.34
549 550 5.386958 AAGAGTTGCTACACGATCTAACA 57.613 39.130 0.13 0.00 0.00 2.41
550 551 5.584253 AGAGTTGCTACACGATCTAACAT 57.416 39.130 0.13 0.00 0.00 2.71
573 574 0.518636 CGCCACTTGAGGTTGACATG 59.481 55.000 0.00 0.00 0.00 3.21
575 576 1.545428 GCCACTTGAGGTTGACATGGA 60.545 52.381 0.00 0.00 0.00 3.41
611 613 4.161565 TGGTATCACTCCTAATCAAGCGTT 59.838 41.667 0.00 0.00 0.00 4.84
624 626 1.650153 CAAGCGTTGGCGAAAATGATG 59.350 47.619 0.00 0.00 46.35 3.07
626 628 0.170116 GCGTTGGCGAAAATGATGGA 59.830 50.000 0.00 0.00 41.33 3.41
640 642 1.348064 GATGGATGGATCGGGGTACA 58.652 55.000 0.00 0.00 0.00 2.90
681 704 3.644861 GTGGAACCACAAGGGGTAG 57.355 57.895 17.69 0.00 45.53 3.18
684 707 0.331616 GGAACCACAAGGGGTAGCAT 59.668 55.000 0.00 0.00 41.32 3.79
688 711 0.179073 CCACAAGGGGTAGCATCGAG 60.179 60.000 0.00 0.00 0.00 4.04
699 722 4.262036 GGGTAGCATCGAGAACATGTGATA 60.262 45.833 0.00 0.00 0.00 2.15
712 735 4.755411 ACATGTGATACTCCTGGTTAACG 58.245 43.478 0.00 0.00 0.00 3.18
717 740 5.098211 GTGATACTCCTGGTTAACGTACAC 58.902 45.833 0.00 4.32 0.00 2.90
730 795 7.545265 TGGTTAACGTACACAGTATATTTGACC 59.455 37.037 0.00 0.00 0.00 4.02
1354 1442 1.996187 GTCTCCTCCTTCCACCCCC 60.996 68.421 0.00 0.00 0.00 5.40
1554 1642 3.338250 TCCTGGGTCATGGTGGCC 61.338 66.667 0.00 0.00 42.67 5.36
1740 1828 1.956170 CAACCTCACGCGTCTGCTT 60.956 57.895 9.86 0.00 39.65 3.91
1824 1912 2.387309 CATGCTCCATGTCACCGAC 58.613 57.895 0.00 0.00 37.12 4.79
1825 1913 0.107993 CATGCTCCATGTCACCGACT 60.108 55.000 0.00 0.00 37.12 4.18
1828 1916 1.517832 CTCCATGTCACCGACTCCC 59.482 63.158 0.00 0.00 33.15 4.30
1833 1921 4.436998 GTCACCGACTCCCCGCAG 62.437 72.222 0.00 0.00 0.00 5.18
1875 1963 3.512516 GCTGATGCGGCCAACTCC 61.513 66.667 2.24 0.00 0.00 3.85
1968 2056 2.095364 GCTCAACACTGATGCCAAGAAG 60.095 50.000 0.00 0.00 0.00 2.85
2103 2191 0.522705 GATGTGAGCAGCAATGCACG 60.523 55.000 8.35 0.00 37.25 5.34
2106 2194 4.487412 GAGCAGCAATGCACGGCC 62.487 66.667 8.35 0.00 37.25 6.13
2133 2221 1.154301 GCATTACAACGGCGTGGTG 60.154 57.895 29.30 19.59 0.00 4.17
2202 2290 3.997021 CGCAACAAAGGATCTGACTAGTT 59.003 43.478 0.00 0.00 0.00 2.24
2206 2294 6.128526 GCAACAAAGGATCTGACTAGTTGTAC 60.129 42.308 0.00 0.00 36.89 2.90
2308 2396 7.391833 GTGAGATAGGAAGGTTCTTTTGATTGT 59.608 37.037 0.00 0.00 0.00 2.71
2397 2485 5.179555 GGACATCTTAGAACCACACAGTTTC 59.820 44.000 0.00 0.00 0.00 2.78
2410 2498 2.624838 CACAGTTTCTGGCTGAATGGTT 59.375 45.455 7.68 0.00 37.40 3.67
2414 2502 4.278170 CAGTTTCTGGCTGAATGGTTAACA 59.722 41.667 8.10 0.00 36.12 2.41
2729 2817 8.571461 ACTACAACGTCTTTTCTTGTACTTAG 57.429 34.615 0.00 0.00 30.76 2.18
2759 2847 8.304596 CAGTAGTTGAGGTACTTCTAACATTGA 58.695 37.037 16.61 3.56 41.55 2.57
2915 3008 9.029243 GCTATAATCATATGACTGTACTGCATC 57.971 37.037 7.78 0.00 0.00 3.91
3070 3164 2.813754 TCTTTCTGCCCATGAAGAAACG 59.186 45.455 11.75 9.44 37.46 3.60
3082 3176 6.348950 CCCATGAAGAAACGCAATAGTTGTTA 60.349 38.462 0.00 0.00 34.14 2.41
3083 3177 7.081349 CCATGAAGAAACGCAATAGTTGTTAA 58.919 34.615 0.00 0.00 34.14 2.01
3094 3188 6.302313 CGCAATAGTTGTTAACTTTGTGTAGC 59.698 38.462 7.22 2.16 42.81 3.58
3122 3216 4.715297 GGTCTTCCATACTTCCTGGAACTA 59.285 45.833 4.68 1.56 45.56 2.24
3191 3289 1.905215 CACACCTCCTCTGATCTGGTT 59.095 52.381 0.00 0.00 0.00 3.67
3349 3447 9.018582 TGTGAGATCTCTACTATGATGGTTATG 57.981 37.037 22.95 0.00 0.00 1.90
3399 3500 6.399743 TGTGCTCGTTCCTTGTTGTATATTA 58.600 36.000 0.00 0.00 0.00 0.98
3417 3518 9.325198 TGTATATTACTGTTAGCAACATTCTGG 57.675 33.333 2.83 0.00 41.26 3.86
3455 3556 6.599638 AGATGGTCAATCTTTGTAAAGGTAGC 59.400 38.462 4.67 0.00 43.52 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.493035 TGTAGTCGTACACCTTCACGA 58.507 47.619 0.00 0.00 44.32 4.35
1 2 2.975410 TGTAGTCGTACACCTTCACG 57.025 50.000 0.00 0.00 34.02 4.35
2 3 4.430137 TGATGTAGTCGTACACCTTCAC 57.570 45.455 0.00 0.00 42.06 3.18
3 4 4.321452 GGTTGATGTAGTCGTACACCTTCA 60.321 45.833 0.00 0.00 42.06 3.02
4 5 4.171754 GGTTGATGTAGTCGTACACCTTC 58.828 47.826 0.00 0.00 42.06 3.46
5 6 3.366679 CGGTTGATGTAGTCGTACACCTT 60.367 47.826 0.00 0.00 42.06 3.50
6 7 2.163010 CGGTTGATGTAGTCGTACACCT 59.837 50.000 0.00 0.00 42.06 4.00
7 8 2.523015 CGGTTGATGTAGTCGTACACC 58.477 52.381 0.00 0.00 42.06 4.16
8 9 1.916000 GCGGTTGATGTAGTCGTACAC 59.084 52.381 0.00 0.00 42.06 2.90
9 10 1.466192 CGCGGTTGATGTAGTCGTACA 60.466 52.381 0.00 0.00 43.43 2.90
10 11 1.186030 CGCGGTTGATGTAGTCGTAC 58.814 55.000 0.00 0.00 0.00 3.67
11 12 0.804364 ACGCGGTTGATGTAGTCGTA 59.196 50.000 12.47 0.00 0.00 3.43
12 13 0.038892 AACGCGGTTGATGTAGTCGT 60.039 50.000 12.47 0.00 0.00 4.34
13 14 0.365523 CAACGCGGTTGATGTAGTCG 59.634 55.000 12.47 0.00 45.28 4.18
14 15 1.705256 TCAACGCGGTTGATGTAGTC 58.295 50.000 12.47 0.00 45.88 2.59
15 16 3.898380 TCAACGCGGTTGATGTAGT 57.102 47.368 12.47 0.00 45.88 2.73
39 40 1.396644 CGTAGATCGTAAGCGGAAGC 58.603 55.000 0.00 0.00 46.19 3.86
40 41 2.349627 CCTCGTAGATCGTAAGCGGAAG 60.350 54.545 0.00 0.00 40.80 3.46
41 42 1.600957 CCTCGTAGATCGTAAGCGGAA 59.399 52.381 0.00 0.00 40.80 4.30
42 43 1.224075 CCTCGTAGATCGTAAGCGGA 58.776 55.000 0.00 0.00 40.80 5.54
43 44 0.237761 CCCTCGTAGATCGTAAGCGG 59.762 60.000 0.00 0.00 40.80 5.52
44 45 0.942962 ACCCTCGTAGATCGTAAGCG 59.057 55.000 0.00 0.00 40.80 4.68
45 46 2.096516 CGTACCCTCGTAGATCGTAAGC 60.097 54.545 0.00 0.00 40.80 3.09
46 47 3.126831 ACGTACCCTCGTAGATCGTAAG 58.873 50.000 0.00 0.00 42.35 2.34
47 48 3.179443 ACGTACCCTCGTAGATCGTAA 57.821 47.619 0.00 0.00 42.35 3.18
48 49 2.890808 ACGTACCCTCGTAGATCGTA 57.109 50.000 0.00 0.00 42.35 3.43
49 50 2.890808 TACGTACCCTCGTAGATCGT 57.109 50.000 0.00 0.00 43.80 3.73
55 56 2.742053 GTGTTGTCTACGTACCCTCGTA 59.258 50.000 0.00 0.00 43.80 3.43
56 57 1.537202 GTGTTGTCTACGTACCCTCGT 59.463 52.381 0.00 0.00 45.97 4.18
57 58 1.808945 AGTGTTGTCTACGTACCCTCG 59.191 52.381 0.00 0.00 0.00 4.63
58 59 3.080319 AGAGTGTTGTCTACGTACCCTC 58.920 50.000 0.00 0.00 0.00 4.30
59 60 3.080319 GAGAGTGTTGTCTACGTACCCT 58.920 50.000 0.00 0.00 0.00 4.34
60 61 2.163211 GGAGAGTGTTGTCTACGTACCC 59.837 54.545 0.00 0.00 0.00 3.69
61 62 2.163211 GGGAGAGTGTTGTCTACGTACC 59.837 54.545 0.00 0.00 0.00 3.34
62 63 3.080319 AGGGAGAGTGTTGTCTACGTAC 58.920 50.000 0.00 0.00 0.00 3.67
63 64 3.430042 AGGGAGAGTGTTGTCTACGTA 57.570 47.619 0.00 0.00 0.00 3.57
64 65 2.289592 AGGGAGAGTGTTGTCTACGT 57.710 50.000 0.00 0.00 0.00 3.57
65 66 2.820787 AGAAGGGAGAGTGTTGTCTACG 59.179 50.000 0.00 0.00 0.00 3.51
66 67 3.119779 CGAGAAGGGAGAGTGTTGTCTAC 60.120 52.174 0.00 0.00 0.00 2.59
67 68 3.082548 CGAGAAGGGAGAGTGTTGTCTA 58.917 50.000 0.00 0.00 0.00 2.59
68 69 1.889829 CGAGAAGGGAGAGTGTTGTCT 59.110 52.381 0.00 0.00 0.00 3.41
69 70 1.614413 ACGAGAAGGGAGAGTGTTGTC 59.386 52.381 0.00 0.00 0.00 3.18
70 71 1.705873 ACGAGAAGGGAGAGTGTTGT 58.294 50.000 0.00 0.00 0.00 3.32
71 72 2.224066 ACAACGAGAAGGGAGAGTGTTG 60.224 50.000 0.00 0.00 40.61 3.33
72 73 2.040178 ACAACGAGAAGGGAGAGTGTT 58.960 47.619 0.00 0.00 0.00 3.32
73 74 1.705873 ACAACGAGAAGGGAGAGTGT 58.294 50.000 0.00 0.00 0.00 3.55
74 75 2.821991 AACAACGAGAAGGGAGAGTG 57.178 50.000 0.00 0.00 0.00 3.51
75 76 3.368531 GCATAACAACGAGAAGGGAGAGT 60.369 47.826 0.00 0.00 0.00 3.24
76 77 3.190874 GCATAACAACGAGAAGGGAGAG 58.809 50.000 0.00 0.00 0.00 3.20
77 78 2.565391 TGCATAACAACGAGAAGGGAGA 59.435 45.455 0.00 0.00 0.00 3.71
78 79 2.972625 TGCATAACAACGAGAAGGGAG 58.027 47.619 0.00 0.00 0.00 4.30
79 80 3.055458 TGATGCATAACAACGAGAAGGGA 60.055 43.478 0.00 0.00 0.00 4.20
80 81 3.063997 GTGATGCATAACAACGAGAAGGG 59.936 47.826 9.51 0.00 0.00 3.95
81 82 3.063997 GGTGATGCATAACAACGAGAAGG 59.936 47.826 16.28 0.00 0.00 3.46
82 83 3.684305 TGGTGATGCATAACAACGAGAAG 59.316 43.478 16.28 0.00 0.00 2.85
83 84 3.669536 TGGTGATGCATAACAACGAGAA 58.330 40.909 16.28 0.00 0.00 2.87
84 85 3.326836 TGGTGATGCATAACAACGAGA 57.673 42.857 16.28 0.00 0.00 4.04
85 86 3.622612 TCATGGTGATGCATAACAACGAG 59.377 43.478 16.28 3.04 0.00 4.18
86 87 3.604582 TCATGGTGATGCATAACAACGA 58.395 40.909 16.28 0.00 0.00 3.85
87 88 4.530388 GATCATGGTGATGCATAACAACG 58.470 43.478 16.28 0.00 37.20 4.10
88 89 4.581824 AGGATCATGGTGATGCATAACAAC 59.418 41.667 16.28 6.50 46.03 3.32
89 90 4.581409 CAGGATCATGGTGATGCATAACAA 59.419 41.667 16.28 4.95 46.03 2.83
90 91 4.139038 CAGGATCATGGTGATGCATAACA 58.861 43.478 16.28 8.10 46.03 2.41
91 92 3.057736 GCAGGATCATGGTGATGCATAAC 60.058 47.826 9.76 5.51 46.03 1.89
92 93 3.151554 GCAGGATCATGGTGATGCATAA 58.848 45.455 9.76 0.00 46.03 1.90
93 94 2.786777 GCAGGATCATGGTGATGCATA 58.213 47.619 9.76 0.00 46.03 3.14
94 95 1.617322 GCAGGATCATGGTGATGCAT 58.383 50.000 9.76 0.00 46.03 3.96
95 96 0.816421 CGCAGGATCATGGTGATGCA 60.816 55.000 9.76 0.00 46.03 3.96
96 97 0.816825 ACGCAGGATCATGGTGATGC 60.817 55.000 9.76 3.59 44.29 3.91
97 98 0.942252 CACGCAGGATCATGGTGATG 59.058 55.000 18.31 0.00 37.20 3.07
98 99 0.543277 ACACGCAGGATCATGGTGAT 59.457 50.000 25.47 13.21 40.34 3.06
99 100 0.391528 CACACGCAGGATCATGGTGA 60.392 55.000 25.47 0.00 33.08 4.02
100 101 1.985447 GCACACGCAGGATCATGGTG 61.985 60.000 20.27 20.27 38.36 4.17
101 102 1.746615 GCACACGCAGGATCATGGT 60.747 57.895 9.76 2.66 38.36 3.55
102 103 2.816360 CGCACACGCAGGATCATGG 61.816 63.158 9.76 2.01 38.40 3.66
103 104 1.638388 AACGCACACGCAGGATCATG 61.638 55.000 2.22 2.22 45.53 3.07
104 105 0.955428 AAACGCACACGCAGGATCAT 60.955 50.000 0.00 0.00 45.53 2.45
105 106 1.163420 AAAACGCACACGCAGGATCA 61.163 50.000 0.00 0.00 45.53 2.92
106 107 0.040425 AAAAACGCACACGCAGGATC 60.040 50.000 0.00 0.00 45.53 3.36
107 108 2.029743 AAAAACGCACACGCAGGAT 58.970 47.368 0.00 0.00 45.53 3.24
108 109 3.503749 AAAAACGCACACGCAGGA 58.496 50.000 0.00 0.00 45.53 3.86
139 140 1.818363 TGCGCGGTGTTGGTTAACA 60.818 52.632 8.83 0.00 44.17 2.41
140 141 1.369568 GTGCGCGGTGTTGGTTAAC 60.370 57.895 8.83 0.00 37.32 2.01
141 142 2.544698 GGTGCGCGGTGTTGGTTAA 61.545 57.895 8.83 0.00 0.00 2.01
142 143 2.973600 GGTGCGCGGTGTTGGTTA 60.974 61.111 8.83 0.00 0.00 2.85
193 194 4.072088 GTGGTCTTTGACGCGCGG 62.072 66.667 35.22 16.11 32.65 6.46
194 195 4.072088 GGTGGTCTTTGACGCGCG 62.072 66.667 30.96 30.96 32.65 6.86
195 196 2.665185 AGGTGGTCTTTGACGCGC 60.665 61.111 5.73 0.00 32.65 6.86
196 197 1.006102 AGAGGTGGTCTTTGACGCG 60.006 57.895 3.53 3.53 32.65 6.01
197 198 1.569479 GCAGAGGTGGTCTTTGACGC 61.569 60.000 0.00 0.00 30.64 5.19
198 199 0.951040 GGCAGAGGTGGTCTTTGACG 60.951 60.000 0.00 0.00 30.64 4.35
199 200 0.951040 CGGCAGAGGTGGTCTTTGAC 60.951 60.000 0.00 0.00 32.63 3.18
200 201 1.371183 CGGCAGAGGTGGTCTTTGA 59.629 57.895 0.00 0.00 30.64 2.69
201 202 2.328099 GCGGCAGAGGTGGTCTTTG 61.328 63.158 0.00 0.00 30.64 2.77
202 203 2.032681 GCGGCAGAGGTGGTCTTT 59.967 61.111 0.00 0.00 30.64 2.52
203 204 4.021925 GGCGGCAGAGGTGGTCTT 62.022 66.667 3.07 0.00 30.64 3.01
207 208 4.641645 TTGTGGCGGCAGAGGTGG 62.642 66.667 13.91 0.00 0.00 4.61
208 209 3.052082 CTTGTGGCGGCAGAGGTG 61.052 66.667 13.91 1.39 0.00 4.00
263 264 3.423154 GAACTCGCGGGCAACTGG 61.423 66.667 5.51 0.00 45.89 4.00
265 266 4.699522 GGGAACTCGCGGGCAACT 62.700 66.667 5.51 0.00 0.00 3.16
270 271 3.447025 GAGATGGGGAACTCGCGGG 62.447 68.421 3.27 3.27 0.00 6.13
271 272 2.107141 GAGATGGGGAACTCGCGG 59.893 66.667 6.13 0.00 0.00 6.46
272 273 2.278857 CGAGATGGGGAACTCGCG 60.279 66.667 0.00 0.00 46.54 5.87
275 276 1.066587 CTCGCGAGATGGGGAACTC 59.933 63.158 32.06 0.00 40.84 3.01
276 277 3.082579 GCTCGCGAGATGGGGAACT 62.083 63.158 38.74 0.00 40.84 3.01
277 278 2.586357 GCTCGCGAGATGGGGAAC 60.586 66.667 38.74 15.08 40.84 3.62
278 279 2.178876 TTTGCTCGCGAGATGGGGAA 62.179 55.000 38.74 17.49 40.84 3.97
279 280 2.655073 TTTGCTCGCGAGATGGGGA 61.655 57.895 38.74 11.74 40.84 4.81
280 281 2.125147 TTTGCTCGCGAGATGGGG 60.125 61.111 38.74 13.63 40.84 4.96
281 282 1.091771 ATGTTTGCTCGCGAGATGGG 61.092 55.000 38.74 14.44 40.84 4.00
282 283 0.302890 GATGTTTGCTCGCGAGATGG 59.697 55.000 38.74 14.86 40.84 3.51
283 284 0.302890 GGATGTTTGCTCGCGAGATG 59.697 55.000 38.74 15.27 40.84 2.90
284 285 1.148157 CGGATGTTTGCTCGCGAGAT 61.148 55.000 38.74 22.69 40.84 2.75
285 286 1.805539 CGGATGTTTGCTCGCGAGA 60.806 57.895 38.74 20.88 39.12 4.04
286 287 2.697425 CGGATGTTTGCTCGCGAG 59.303 61.111 31.37 31.37 0.00 5.03
287 288 3.487202 GCGGATGTTTGCTCGCGA 61.487 61.111 9.26 9.26 38.82 5.87
289 290 4.520846 CGGCGGATGTTTGCTCGC 62.521 66.667 0.00 0.00 46.35 5.03
290 291 2.296692 CTTCGGCGGATGTTTGCTCG 62.297 60.000 7.21 0.00 0.00 5.03
291 292 1.019278 TCTTCGGCGGATGTTTGCTC 61.019 55.000 7.21 0.00 0.00 4.26
292 293 1.003839 TCTTCGGCGGATGTTTGCT 60.004 52.632 7.21 0.00 0.00 3.91
293 294 1.019278 TCTCTTCGGCGGATGTTTGC 61.019 55.000 7.21 0.00 0.00 3.68
294 295 1.002366 CTCTCTTCGGCGGATGTTTG 58.998 55.000 7.21 0.00 0.00 2.93
295 296 0.741221 GCTCTCTTCGGCGGATGTTT 60.741 55.000 7.21 0.00 0.00 2.83
296 297 1.153549 GCTCTCTTCGGCGGATGTT 60.154 57.895 7.21 0.00 0.00 2.71
297 298 1.680522 ATGCTCTCTTCGGCGGATGT 61.681 55.000 7.21 0.00 0.00 3.06
298 299 1.068753 ATGCTCTCTTCGGCGGATG 59.931 57.895 7.21 0.00 0.00 3.51
299 300 1.068753 CATGCTCTCTTCGGCGGAT 59.931 57.895 7.21 0.00 0.00 4.18
300 301 2.496341 CATGCTCTCTTCGGCGGA 59.504 61.111 7.21 0.00 0.00 5.54
301 302 3.267860 GCATGCTCTCTTCGGCGG 61.268 66.667 11.37 0.00 0.00 6.13
302 303 3.267860 GGCATGCTCTCTTCGGCG 61.268 66.667 18.92 0.00 0.00 6.46
303 304 2.899339 GGGCATGCTCTCTTCGGC 60.899 66.667 18.92 0.00 0.00 5.54
304 305 2.203126 GGGGCATGCTCTCTTCGG 60.203 66.667 18.99 0.00 0.00 4.30
305 306 2.203126 GGGGGCATGCTCTCTTCG 60.203 66.667 18.99 0.00 0.00 3.79
332 333 4.680237 TGCCGGTCCTGTGCGAAG 62.680 66.667 1.90 0.00 0.00 3.79
333 334 3.545124 ATTGCCGGTCCTGTGCGAA 62.545 57.895 1.90 0.00 0.00 4.70
334 335 4.015406 ATTGCCGGTCCTGTGCGA 62.015 61.111 1.90 0.00 0.00 5.10
335 336 3.803082 CATTGCCGGTCCTGTGCG 61.803 66.667 1.90 0.00 0.00 5.34
336 337 3.443045 CCATTGCCGGTCCTGTGC 61.443 66.667 1.90 0.00 0.00 4.57
337 338 3.443045 GCCATTGCCGGTCCTGTG 61.443 66.667 1.90 0.00 0.00 3.66
339 340 4.776322 TCGCCATTGCCGGTCCTG 62.776 66.667 1.90 0.00 0.00 3.86
340 341 4.473520 CTCGCCATTGCCGGTCCT 62.474 66.667 1.90 0.00 0.00 3.85
346 347 3.764160 CTCCTCCCTCGCCATTGCC 62.764 68.421 0.00 0.00 0.00 4.52
347 348 2.203126 CTCCTCCCTCGCCATTGC 60.203 66.667 0.00 0.00 0.00 3.56
348 349 0.179062 CTTCTCCTCCCTCGCCATTG 60.179 60.000 0.00 0.00 0.00 2.82
349 350 1.341156 CCTTCTCCTCCCTCGCCATT 61.341 60.000 0.00 0.00 0.00 3.16
350 351 1.764054 CCTTCTCCTCCCTCGCCAT 60.764 63.158 0.00 0.00 0.00 4.40
351 352 2.364317 CCTTCTCCTCCCTCGCCA 60.364 66.667 0.00 0.00 0.00 5.69
352 353 3.157949 CCCTTCTCCTCCCTCGCC 61.158 72.222 0.00 0.00 0.00 5.54
353 354 3.157949 CCCCTTCTCCTCCCTCGC 61.158 72.222 0.00 0.00 0.00 5.03
354 355 2.444895 CCCCCTTCTCCTCCCTCG 60.445 72.222 0.00 0.00 0.00 4.63
377 378 2.676471 ACAAACATGGGCCGCTCC 60.676 61.111 0.00 0.00 0.00 4.70
378 379 1.244019 AAGACAAACATGGGCCGCTC 61.244 55.000 0.00 0.00 0.00 5.03
379 380 0.827507 AAAGACAAACATGGGCCGCT 60.828 50.000 0.00 0.00 0.00 5.52
380 381 0.885196 TAAAGACAAACATGGGCCGC 59.115 50.000 0.00 0.00 0.00 6.53
381 382 1.883275 TGTAAAGACAAACATGGGCCG 59.117 47.619 0.00 0.00 30.68 6.13
382 383 5.652994 TTATGTAAAGACAAACATGGGCC 57.347 39.130 0.00 0.00 39.59 5.80
383 384 8.546597 AAATTTATGTAAAGACAAACATGGGC 57.453 30.769 0.00 0.00 39.59 5.36
384 385 9.703892 TGAAATTTATGTAAAGACAAACATGGG 57.296 29.630 0.00 0.00 39.59 4.00
388 389 9.619316 CGGATGAAATTTATGTAAAGACAAACA 57.381 29.630 0.00 0.00 39.59 2.83
389 390 9.834628 TCGGATGAAATTTATGTAAAGACAAAC 57.165 29.630 0.00 0.00 39.59 2.93
394 395 9.515020 GCAAATCGGATGAAATTTATGTAAAGA 57.485 29.630 0.00 0.00 0.00 2.52
395 396 9.520204 AGCAAATCGGATGAAATTTATGTAAAG 57.480 29.630 0.00 0.00 0.00 1.85
396 397 9.299963 CAGCAAATCGGATGAAATTTATGTAAA 57.700 29.630 0.00 0.00 0.00 2.01
397 398 8.681806 TCAGCAAATCGGATGAAATTTATGTAA 58.318 29.630 0.00 0.00 28.85 2.41
398 399 8.219546 TCAGCAAATCGGATGAAATTTATGTA 57.780 30.769 0.00 0.00 28.85 2.29
399 400 7.099266 TCAGCAAATCGGATGAAATTTATGT 57.901 32.000 0.00 0.00 28.85 2.29
400 401 7.990541 TTCAGCAAATCGGATGAAATTTATG 57.009 32.000 0.00 0.00 39.93 1.90
407 408 5.241506 ACTCTTTTTCAGCAAATCGGATGAA 59.758 36.000 0.00 0.00 41.02 2.57
408 409 4.761739 ACTCTTTTTCAGCAAATCGGATGA 59.238 37.500 0.00 0.00 0.00 2.92
409 410 5.051891 ACTCTTTTTCAGCAAATCGGATG 57.948 39.130 0.00 0.00 0.00 3.51
410 411 5.712152 AACTCTTTTTCAGCAAATCGGAT 57.288 34.783 0.00 0.00 0.00 4.18
411 412 5.280945 CAAACTCTTTTTCAGCAAATCGGA 58.719 37.500 0.00 0.00 0.00 4.55
412 413 4.084900 GCAAACTCTTTTTCAGCAAATCGG 60.085 41.667 0.00 0.00 0.00 4.18
413 414 4.503734 TGCAAACTCTTTTTCAGCAAATCG 59.496 37.500 0.00 0.00 0.00 3.34
414 415 5.971895 TGCAAACTCTTTTTCAGCAAATC 57.028 34.783 0.00 0.00 0.00 2.17
415 416 6.721321 CATTGCAAACTCTTTTTCAGCAAAT 58.279 32.000 1.71 0.00 42.75 2.32
416 417 5.447548 GCATTGCAAACTCTTTTTCAGCAAA 60.448 36.000 1.71 0.00 42.75 3.68
417 418 4.034279 GCATTGCAAACTCTTTTTCAGCAA 59.966 37.500 1.71 0.00 43.50 3.91
418 419 3.556775 GCATTGCAAACTCTTTTTCAGCA 59.443 39.130 1.71 0.00 0.00 4.41
419 420 3.556775 TGCATTGCAAACTCTTTTTCAGC 59.443 39.130 9.33 0.00 34.76 4.26
420 421 4.210537 CCTGCATTGCAAACTCTTTTTCAG 59.789 41.667 13.18 0.00 38.41 3.02
421 422 4.121317 CCTGCATTGCAAACTCTTTTTCA 58.879 39.130 13.18 0.00 38.41 2.69
422 423 4.122046 ACCTGCATTGCAAACTCTTTTTC 58.878 39.130 13.18 0.00 38.41 2.29
423 424 4.141233 ACCTGCATTGCAAACTCTTTTT 57.859 36.364 13.18 0.00 38.41 1.94
424 425 3.825143 ACCTGCATTGCAAACTCTTTT 57.175 38.095 13.18 0.00 38.41 2.27
425 426 3.005791 GGTACCTGCATTGCAAACTCTTT 59.994 43.478 13.18 0.00 38.41 2.52
426 427 2.558359 GGTACCTGCATTGCAAACTCTT 59.442 45.455 13.18 0.00 38.41 2.85
427 428 2.162681 GGTACCTGCATTGCAAACTCT 58.837 47.619 13.18 0.00 38.41 3.24
428 429 2.162681 AGGTACCTGCATTGCAAACTC 58.837 47.619 15.42 4.21 38.41 3.01
429 430 2.292828 AGGTACCTGCATTGCAAACT 57.707 45.000 15.42 3.02 38.41 2.66
430 431 3.081804 ACTAGGTACCTGCATTGCAAAC 58.918 45.455 25.33 10.70 38.41 2.93
431 432 3.081061 CACTAGGTACCTGCATTGCAAA 58.919 45.455 25.33 0.00 38.41 3.68
432 433 2.039746 ACACTAGGTACCTGCATTGCAA 59.960 45.455 25.33 0.00 38.41 4.08
433 434 1.628340 ACACTAGGTACCTGCATTGCA 59.372 47.619 25.33 11.50 36.92 4.08
434 435 2.403252 ACACTAGGTACCTGCATTGC 57.597 50.000 25.33 0.46 0.00 3.56
435 436 3.937814 TCAACACTAGGTACCTGCATTG 58.062 45.455 25.33 20.48 0.00 2.82
436 437 4.634012 TTCAACACTAGGTACCTGCATT 57.366 40.909 25.33 10.35 0.00 3.56
437 438 4.517285 CATTCAACACTAGGTACCTGCAT 58.483 43.478 25.33 6.62 0.00 3.96
438 439 3.307410 CCATTCAACACTAGGTACCTGCA 60.307 47.826 25.33 4.21 0.00 4.41
439 440 3.270877 CCATTCAACACTAGGTACCTGC 58.729 50.000 25.33 0.00 0.00 4.85
440 441 3.270877 GCCATTCAACACTAGGTACCTG 58.729 50.000 25.33 16.10 0.00 4.00
441 442 2.093658 CGCCATTCAACACTAGGTACCT 60.094 50.000 20.57 20.57 0.00 3.08
442 443 2.277084 CGCCATTCAACACTAGGTACC 58.723 52.381 2.73 2.73 0.00 3.34
443 444 2.928116 GACGCCATTCAACACTAGGTAC 59.072 50.000 0.00 0.00 0.00 3.34
444 445 2.829720 AGACGCCATTCAACACTAGGTA 59.170 45.455 0.00 0.00 0.00 3.08
445 446 1.623811 AGACGCCATTCAACACTAGGT 59.376 47.619 0.00 0.00 0.00 3.08
446 447 2.386661 AGACGCCATTCAACACTAGG 57.613 50.000 0.00 0.00 0.00 3.02
447 448 4.207224 CGATAAGACGCCATTCAACACTAG 59.793 45.833 0.00 0.00 0.00 2.57
448 449 4.109766 CGATAAGACGCCATTCAACACTA 58.890 43.478 0.00 0.00 0.00 2.74
449 450 2.930040 CGATAAGACGCCATTCAACACT 59.070 45.455 0.00 0.00 0.00 3.55
450 451 2.671396 ACGATAAGACGCCATTCAACAC 59.329 45.455 0.00 0.00 36.70 3.32
451 452 2.967362 ACGATAAGACGCCATTCAACA 58.033 42.857 0.00 0.00 36.70 3.33
452 453 4.150098 GGATACGATAAGACGCCATTCAAC 59.850 45.833 0.00 0.00 36.70 3.18
453 454 4.304110 GGATACGATAAGACGCCATTCAA 58.696 43.478 0.00 0.00 36.70 2.69
454 455 3.909430 GGATACGATAAGACGCCATTCA 58.091 45.455 0.00 0.00 36.70 2.57
475 476 3.357504 GGGTTAATCCGAGGACACG 57.642 57.895 0.00 0.00 37.00 4.49
484 485 2.414138 CACGAACAGAACGGGTTAATCC 59.586 50.000 0.00 0.00 34.93 3.01
485 486 2.414138 CCACGAACAGAACGGGTTAATC 59.586 50.000 0.00 0.00 34.93 1.75
486 487 2.037511 TCCACGAACAGAACGGGTTAAT 59.962 45.455 0.00 0.00 34.93 1.40
487 488 1.411977 TCCACGAACAGAACGGGTTAA 59.588 47.619 0.00 0.00 34.93 2.01
488 489 1.039068 TCCACGAACAGAACGGGTTA 58.961 50.000 0.00 0.00 34.93 2.85
489 490 0.395312 ATCCACGAACAGAACGGGTT 59.605 50.000 0.00 0.00 34.93 4.11
490 491 0.320421 CATCCACGAACAGAACGGGT 60.320 55.000 0.00 0.00 34.93 5.28
491 492 0.037697 TCATCCACGAACAGAACGGG 60.038 55.000 0.00 0.00 34.93 5.28
492 493 1.790755 TTCATCCACGAACAGAACGG 58.209 50.000 0.00 0.00 34.93 4.44
493 494 2.474526 GCATTCATCCACGAACAGAACG 60.475 50.000 0.00 0.00 0.00 3.95
494 495 2.483877 TGCATTCATCCACGAACAGAAC 59.516 45.455 0.00 0.00 0.00 3.01
495 496 2.743664 CTGCATTCATCCACGAACAGAA 59.256 45.455 0.00 0.00 0.00 3.02
496 497 2.349590 CTGCATTCATCCACGAACAGA 58.650 47.619 0.00 0.00 0.00 3.41
497 498 1.399440 CCTGCATTCATCCACGAACAG 59.601 52.381 0.00 0.00 0.00 3.16
498 499 1.003003 TCCTGCATTCATCCACGAACA 59.997 47.619 0.00 0.00 0.00 3.18
499 500 1.667724 CTCCTGCATTCATCCACGAAC 59.332 52.381 0.00 0.00 0.00 3.95
500 501 1.554617 TCTCCTGCATTCATCCACGAA 59.445 47.619 0.00 0.00 0.00 3.85
501 502 1.194218 TCTCCTGCATTCATCCACGA 58.806 50.000 0.00 0.00 0.00 4.35
502 503 2.028420 TTCTCCTGCATTCATCCACG 57.972 50.000 0.00 0.00 0.00 4.94
503 504 4.996788 ATTTTCTCCTGCATTCATCCAC 57.003 40.909 0.00 0.00 0.00 4.02
504 505 7.396907 TCTTAAATTTTCTCCTGCATTCATCCA 59.603 33.333 0.00 0.00 0.00 3.41
505 506 7.775120 TCTTAAATTTTCTCCTGCATTCATCC 58.225 34.615 0.00 0.00 0.00 3.51
506 507 8.465201 ACTCTTAAATTTTCTCCTGCATTCATC 58.535 33.333 0.00 0.00 0.00 2.92
507 508 8.358582 ACTCTTAAATTTTCTCCTGCATTCAT 57.641 30.769 0.00 0.00 0.00 2.57
508 509 7.765695 ACTCTTAAATTTTCTCCTGCATTCA 57.234 32.000 0.00 0.00 0.00 2.57
509 510 7.062722 GCAACTCTTAAATTTTCTCCTGCATTC 59.937 37.037 0.00 0.00 0.00 2.67
510 511 6.870439 GCAACTCTTAAATTTTCTCCTGCATT 59.130 34.615 0.00 0.00 0.00 3.56
511 512 6.210185 AGCAACTCTTAAATTTTCTCCTGCAT 59.790 34.615 0.00 0.00 0.00 3.96
512 513 5.536161 AGCAACTCTTAAATTTTCTCCTGCA 59.464 36.000 0.00 0.00 0.00 4.41
513 514 6.018589 AGCAACTCTTAAATTTTCTCCTGC 57.981 37.500 0.00 0.00 0.00 4.85
514 515 8.017946 GTGTAGCAACTCTTAAATTTTCTCCTG 58.982 37.037 0.00 0.00 0.00 3.86
515 516 7.095187 CGTGTAGCAACTCTTAAATTTTCTCCT 60.095 37.037 0.00 0.00 0.00 3.69
516 517 7.015877 CGTGTAGCAACTCTTAAATTTTCTCC 58.984 38.462 0.00 0.00 0.00 3.71
517 518 7.793902 TCGTGTAGCAACTCTTAAATTTTCTC 58.206 34.615 0.00 0.00 0.00 2.87
518 519 7.724305 TCGTGTAGCAACTCTTAAATTTTCT 57.276 32.000 0.00 0.00 0.00 2.52
519 520 8.443937 AGATCGTGTAGCAACTCTTAAATTTTC 58.556 33.333 0.00 0.00 0.00 2.29
520 521 8.324163 AGATCGTGTAGCAACTCTTAAATTTT 57.676 30.769 0.00 0.00 0.00 1.82
521 522 7.907214 AGATCGTGTAGCAACTCTTAAATTT 57.093 32.000 0.00 0.00 0.00 1.82
522 523 8.870879 GTTAGATCGTGTAGCAACTCTTAAATT 58.129 33.333 0.00 0.00 0.00 1.82
523 524 8.033038 TGTTAGATCGTGTAGCAACTCTTAAAT 58.967 33.333 0.00 0.00 0.00 1.40
524 525 7.372714 TGTTAGATCGTGTAGCAACTCTTAAA 58.627 34.615 0.00 0.00 0.00 1.52
525 526 6.916440 TGTTAGATCGTGTAGCAACTCTTAA 58.084 36.000 0.00 0.00 0.00 1.85
526 527 6.505044 TGTTAGATCGTGTAGCAACTCTTA 57.495 37.500 0.00 0.00 0.00 2.10
527 528 5.386958 TGTTAGATCGTGTAGCAACTCTT 57.613 39.130 0.00 0.00 0.00 2.85
528 529 5.358442 AGATGTTAGATCGTGTAGCAACTCT 59.642 40.000 0.00 0.00 0.00 3.24
529 530 5.583495 AGATGTTAGATCGTGTAGCAACTC 58.417 41.667 0.00 0.00 0.00 3.01
530 531 5.584253 AGATGTTAGATCGTGTAGCAACT 57.416 39.130 0.00 0.00 0.00 3.16
531 532 5.052304 CGAAGATGTTAGATCGTGTAGCAAC 60.052 44.000 0.00 0.00 0.00 4.17
532 533 5.034797 CGAAGATGTTAGATCGTGTAGCAA 58.965 41.667 0.00 0.00 0.00 3.91
533 534 4.598062 CGAAGATGTTAGATCGTGTAGCA 58.402 43.478 0.00 0.00 0.00 3.49
534 535 3.422546 GCGAAGATGTTAGATCGTGTAGC 59.577 47.826 0.00 0.00 37.60 3.58
535 536 3.975670 GGCGAAGATGTTAGATCGTGTAG 59.024 47.826 0.00 0.00 37.60 2.74
536 537 3.379057 TGGCGAAGATGTTAGATCGTGTA 59.621 43.478 0.00 0.00 37.60 2.90
537 538 2.165641 TGGCGAAGATGTTAGATCGTGT 59.834 45.455 0.00 0.00 37.60 4.49
538 539 2.535984 GTGGCGAAGATGTTAGATCGTG 59.464 50.000 0.00 0.00 37.60 4.35
539 540 2.427453 AGTGGCGAAGATGTTAGATCGT 59.573 45.455 0.00 0.00 37.60 3.73
540 541 3.085443 AGTGGCGAAGATGTTAGATCG 57.915 47.619 0.00 0.00 38.28 3.69
541 542 4.433615 TCAAGTGGCGAAGATGTTAGATC 58.566 43.478 0.00 0.00 0.00 2.75
542 543 4.437239 CTCAAGTGGCGAAGATGTTAGAT 58.563 43.478 0.00 0.00 0.00 1.98
543 544 3.368427 CCTCAAGTGGCGAAGATGTTAGA 60.368 47.826 0.00 0.00 0.00 2.10
544 545 2.932614 CCTCAAGTGGCGAAGATGTTAG 59.067 50.000 0.00 0.00 0.00 2.34
545 546 2.301870 ACCTCAAGTGGCGAAGATGTTA 59.698 45.455 0.00 0.00 0.00 2.41
546 547 1.072331 ACCTCAAGTGGCGAAGATGTT 59.928 47.619 0.00 0.00 0.00 2.71
547 548 0.687354 ACCTCAAGTGGCGAAGATGT 59.313 50.000 0.00 0.00 0.00 3.06
548 549 1.466167 CAACCTCAAGTGGCGAAGATG 59.534 52.381 0.00 0.00 0.00 2.90
549 550 1.347707 TCAACCTCAAGTGGCGAAGAT 59.652 47.619 0.00 0.00 0.00 2.40
550 551 0.756294 TCAACCTCAAGTGGCGAAGA 59.244 50.000 0.00 0.00 0.00 2.87
573 574 1.255667 TACCAGAAGCCACGACCTCC 61.256 60.000 0.00 0.00 0.00 4.30
575 576 0.824759 GATACCAGAAGCCACGACCT 59.175 55.000 0.00 0.00 0.00 3.85
611 613 2.433662 TCCATCCATCATTTTCGCCA 57.566 45.000 0.00 0.00 0.00 5.69
624 626 1.978580 AGATTGTACCCCGATCCATCC 59.021 52.381 0.00 0.00 34.86 3.51
626 628 1.072331 GCAGATTGTACCCCGATCCAT 59.928 52.381 0.00 0.00 34.86 3.41
640 642 5.992217 ACTCTCTTTCGTTTACAAGCAGATT 59.008 36.000 0.00 0.00 0.00 2.40
656 658 2.158608 CCCTTGTGGTTCCACTCTCTTT 60.159 50.000 20.48 0.00 37.78 2.52
677 679 3.165058 TCACATGTTCTCGATGCTACC 57.835 47.619 0.00 0.00 0.00 3.18
678 680 5.524284 AGTATCACATGTTCTCGATGCTAC 58.476 41.667 11.22 1.57 30.35 3.58
681 704 3.738282 GGAGTATCACATGTTCTCGATGC 59.262 47.826 0.00 0.00 36.25 3.91
684 707 3.381590 CCAGGAGTATCACATGTTCTCGA 59.618 47.826 0.00 0.00 36.25 4.04
688 711 5.291128 CGTTAACCAGGAGTATCACATGTTC 59.709 44.000 0.00 0.00 36.25 3.18
699 722 2.961062 ACTGTGTACGTTAACCAGGAGT 59.039 45.455 11.80 2.04 0.00 3.85
712 735 6.106673 ACAGCAGGTCAAATATACTGTGTAC 58.893 40.000 0.00 0.00 35.68 2.90
717 740 5.335127 GCAAACAGCAGGTCAAATATACTG 58.665 41.667 0.00 0.00 44.79 2.74
730 795 0.870393 ATCACTGACGCAAACAGCAG 59.130 50.000 0.00 0.00 46.13 4.24
812 880 6.704493 GCTCGGGTTTTCTTTTTCCTTTTTAT 59.296 34.615 0.00 0.00 0.00 1.40
813 881 6.044046 GCTCGGGTTTTCTTTTTCCTTTTTA 58.956 36.000 0.00 0.00 0.00 1.52
817 885 2.364324 GGCTCGGGTTTTCTTTTTCCTT 59.636 45.455 0.00 0.00 0.00 3.36
819 887 1.335597 CGGCTCGGGTTTTCTTTTTCC 60.336 52.381 0.00 0.00 0.00 3.13
820 888 1.335597 CCGGCTCGGGTTTTCTTTTTC 60.336 52.381 5.79 0.00 44.15 2.29
1296 1384 1.305623 GAGGTACGGGGAGAGGTGA 59.694 63.158 0.00 0.00 0.00 4.02
1365 1453 4.779733 GAGGAGGAGGACGGGGCA 62.780 72.222 0.00 0.00 0.00 5.36
1833 1921 2.403586 GCCAATGCTTCGCCGTAC 59.596 61.111 0.00 0.00 33.53 3.67
1902 1990 3.044059 GAGCCAGAACATGTGCGGC 62.044 63.158 24.09 24.09 43.31 6.53
1905 1993 3.044059 GCCGAGCCAGAACATGTGC 62.044 63.158 0.00 0.00 0.00 4.57
1968 2056 3.546815 GCATTGTGTCGTTCATATGCTCC 60.547 47.826 0.00 0.00 40.48 4.70
2103 2191 2.110213 TAATGCATCCCGTCGGCC 59.890 61.111 5.50 0.00 0.00 6.13
2106 2194 0.300491 CGTTGTAATGCATCCCGTCG 59.700 55.000 0.00 0.00 0.00 5.12
2166 2254 5.277779 CCTTTGTTGCGACTCAATCACTAAA 60.278 40.000 5.50 0.00 36.99 1.85
2202 2290 1.270625 CCTGCTTCAAGAACCCGTACA 60.271 52.381 0.00 0.00 0.00 2.90
2206 2294 0.535102 ACACCTGCTTCAAGAACCCG 60.535 55.000 0.00 0.00 0.00 5.28
2308 2396 0.103208 ACGCAACCAAAATGCCGAAA 59.897 45.000 0.00 0.00 40.72 3.46
2397 2485 3.942829 TCTCTGTTAACCATTCAGCCAG 58.057 45.455 2.48 0.00 0.00 4.85
2632 2720 7.770433 TCTCAGGTTTATCACATTGGATAACTG 59.230 37.037 12.87 12.87 38.96 3.16
2729 2817 3.258622 AGAAGTACCTCAACTACTGGTGC 59.741 47.826 0.00 0.00 36.85 5.01
2898 2991 4.898265 AGTCAGGATGCAGTACAGTCATAT 59.102 41.667 0.00 0.00 34.76 1.78
2915 3008 1.140452 ACCTCATGCTATGCAGTCAGG 59.860 52.381 10.70 10.70 43.65 3.86
3070 3164 6.581166 GGCTACACAAAGTTAACAACTATTGC 59.419 38.462 8.61 3.32 41.91 3.56
3082 3176 3.898482 AGACCAAAGGCTACACAAAGTT 58.102 40.909 0.00 0.00 0.00 2.66
3083 3177 3.577805 AGACCAAAGGCTACACAAAGT 57.422 42.857 0.00 0.00 0.00 2.66
3122 3216 5.575019 ACGTTTTAACAGCGAATTTCAAGT 58.425 33.333 0.00 0.00 0.00 3.16
3191 3289 8.608844 ACCGAAAATGCCAATTAATAAAACAA 57.391 26.923 0.00 0.00 0.00 2.83
3244 3342 0.815734 GCTACTCGGCAGTTCCACTA 59.184 55.000 0.00 0.00 33.62 2.74
3349 3447 3.482156 TGAAGAGAGAATATGCCCAGC 57.518 47.619 0.00 0.00 0.00 4.85
3399 3500 4.718961 AGTTCCAGAATGTTGCTAACAGT 58.281 39.130 7.58 5.12 45.95 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.