Multiple sequence alignment - TraesCS1A01G200600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G200600 chr1A 100.000 7855 0 0 1 7855 361192530 361184676 0.000000e+00 14506.0
1 TraesCS1A01G200600 chr1A 84.800 125 17 2 2709 2832 552884865 552884988 2.980000e-24 124.0
2 TraesCS1A01G200600 chr1B 94.039 2533 117 23 2098 4617 390427799 390425288 0.000000e+00 3810.0
3 TraesCS1A01G200600 chr1B 94.709 2098 80 12 4616 6708 390425103 390423032 0.000000e+00 3230.0
4 TraesCS1A01G200600 chr1B 90.271 1069 63 14 6703 7733 390422852 390421787 0.000000e+00 1360.0
5 TraesCS1A01G200600 chr1B 88.520 1054 65 12 974 2004 390428818 390427798 0.000000e+00 1225.0
6 TraesCS1A01G200600 chr1B 95.690 116 4 1 7730 7844 390396846 390396731 1.350000e-42 185.0
7 TraesCS1A01G200600 chr1B 77.869 244 40 9 2596 2829 98903090 98903329 1.060000e-28 139.0
8 TraesCS1A01G200600 chr1D 91.638 1770 135 6 4614 6373 288904187 288902421 0.000000e+00 2436.0
9 TraesCS1A01G200600 chr1D 90.079 1018 67 19 3633 4617 288905383 288904367 0.000000e+00 1290.0
10 TraesCS1A01G200600 chr1D 84.757 1030 83 30 6270 7278 288902402 288901426 0.000000e+00 965.0
11 TraesCS1A01G200600 chr1D 89.451 711 34 11 975 1680 288909190 288908516 0.000000e+00 859.0
12 TraesCS1A01G200600 chr1D 88.226 603 66 4 3037 3638 288907684 288907086 0.000000e+00 715.0
13 TraesCS1A01G200600 chr1D 89.858 493 21 15 7372 7855 288901350 288900878 2.420000e-169 606.0
14 TraesCS1A01G200600 chr1D 87.903 248 25 4 1759 2004 288908495 288908251 3.590000e-73 287.0
15 TraesCS1A01G200600 chr1D 81.194 335 36 15 2114 2433 288908243 288907921 2.190000e-60 244.0
16 TraesCS1A01G200600 chr4A 97.219 935 24 2 1 934 97379933 97379000 0.000000e+00 1581.0
17 TraesCS1A01G200600 chr3A 97.143 910 24 2 1 909 452939854 452940762 0.000000e+00 1535.0
18 TraesCS1A01G200600 chr3A 75.427 879 184 19 21 886 558697235 558696376 1.590000e-106 398.0
19 TraesCS1A01G200600 chr3A 90.265 113 10 1 1996 2108 75959473 75959584 6.350000e-31 147.0
20 TraesCS1A01G200600 chr5A 95.508 935 32 2 1 934 269322423 269321498 0.000000e+00 1485.0
21 TraesCS1A01G200600 chr5A 90.517 116 10 1 1995 2110 437926291 437926405 1.370000e-32 152.0
22 TraesCS1A01G200600 chr7A 89.231 910 92 4 6 913 291525233 291526138 0.000000e+00 1133.0
23 TraesCS1A01G200600 chr2D 88.065 930 108 2 6 934 90314651 90313724 0.000000e+00 1099.0
24 TraesCS1A01G200600 chr2D 87.879 132 11 5 1977 2103 178280861 178280730 4.910000e-32 150.0
25 TraesCS1A01G200600 chr2B 91.068 515 45 1 6 519 198371243 198370729 0.000000e+00 695.0
26 TraesCS1A01G200600 chr2B 81.757 148 24 3 2709 2855 177133598 177133743 3.850000e-23 121.0
27 TraesCS1A01G200600 chr7D 79.642 894 168 13 1 888 479765294 479766179 1.440000e-176 630.0
28 TraesCS1A01G200600 chr4B 77.651 877 178 14 21 886 630133349 630132480 1.170000e-142 518.0
29 TraesCS1A01G200600 chr5B 77.293 894 184 17 6 886 293308011 293307124 7.030000e-140 508.0
30 TraesCS1A01G200600 chr5D 92.308 117 5 4 1996 2112 266749458 266749346 6.310000e-36 163.0
31 TraesCS1A01G200600 chr5D 94.340 106 6 0 2000 2105 301216106 301216211 6.310000e-36 163.0
32 TraesCS1A01G200600 chr5D 91.743 109 7 2 1996 2102 565043197 565043089 4.910000e-32 150.0
33 TraesCS1A01G200600 chr5D 86.992 123 16 0 2709 2831 133320056 133319934 1.060000e-28 139.0
34 TraesCS1A01G200600 chr5D 83.942 137 22 0 2709 2845 484404703 484404567 1.780000e-26 132.0
35 TraesCS1A01G200600 chr6D 94.286 105 6 0 2000 2104 199867789 199867893 2.270000e-35 161.0
36 TraesCS1A01G200600 chr6D 91.743 109 7 2 1997 2104 16366262 16366369 4.910000e-32 150.0
37 TraesCS1A01G200600 chr6D 85.484 124 18 0 2709 2832 299197260 299197137 6.400000e-26 130.0
38 TraesCS1A01G200600 chr3D 92.593 108 7 1 1999 2106 360331489 360331383 3.800000e-33 154.0
39 TraesCS1A01G200600 chr3D 90.909 110 10 0 2723 2832 401895818 401895927 1.770000e-31 148.0
40 TraesCS1A01G200600 chr7B 86.508 126 13 4 2709 2831 709355720 709355844 1.370000e-27 135.0
41 TraesCS1A01G200600 chr4D 79.439 107 20 2 3030 3136 82015225 82015329 3.040000e-09 75.0
42 TraesCS1A01G200600 chr2A 87.273 55 4 3 3025 3078 14062674 14062726 8.510000e-05 60.2
43 TraesCS1A01G200600 chr6A 100.000 29 0 0 3045 3073 106934036 106934064 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G200600 chr1A 361184676 361192530 7854 True 14506.00 14506 100.00000 1 7855 1 chr1A.!!$R1 7854
1 TraesCS1A01G200600 chr1B 390421787 390428818 7031 True 2406.25 3810 91.88475 974 7733 4 chr1B.!!$R2 6759
2 TraesCS1A01G200600 chr1D 288900878 288909190 8312 True 925.25 2436 87.88825 975 7855 8 chr1D.!!$R1 6880
3 TraesCS1A01G200600 chr4A 97379000 97379933 933 True 1581.00 1581 97.21900 1 934 1 chr4A.!!$R1 933
4 TraesCS1A01G200600 chr3A 452939854 452940762 908 False 1535.00 1535 97.14300 1 909 1 chr3A.!!$F2 908
5 TraesCS1A01G200600 chr3A 558696376 558697235 859 True 398.00 398 75.42700 21 886 1 chr3A.!!$R1 865
6 TraesCS1A01G200600 chr5A 269321498 269322423 925 True 1485.00 1485 95.50800 1 934 1 chr5A.!!$R1 933
7 TraesCS1A01G200600 chr7A 291525233 291526138 905 False 1133.00 1133 89.23100 6 913 1 chr7A.!!$F1 907
8 TraesCS1A01G200600 chr2D 90313724 90314651 927 True 1099.00 1099 88.06500 6 934 1 chr2D.!!$R1 928
9 TraesCS1A01G200600 chr2B 198370729 198371243 514 True 695.00 695 91.06800 6 519 1 chr2B.!!$R1 513
10 TraesCS1A01G200600 chr7D 479765294 479766179 885 False 630.00 630 79.64200 1 888 1 chr7D.!!$F1 887
11 TraesCS1A01G200600 chr4B 630132480 630133349 869 True 518.00 518 77.65100 21 886 1 chr4B.!!$R1 865
12 TraesCS1A01G200600 chr5B 293307124 293308011 887 True 508.00 508 77.29300 6 886 1 chr5B.!!$R1 880

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
953 964 0.038166 GAGGGTGGGAGTCAATGCAA 59.962 55.000 0.0 0.0 0.00 4.08 F
954 965 0.038744 AGGGTGGGAGTCAATGCAAG 59.961 55.000 0.0 0.0 0.00 4.01 F
955 966 0.038166 GGGTGGGAGTCAATGCAAGA 59.962 55.000 0.0 0.0 0.00 3.02 F
2260 2297 0.320858 TGCTTCCGCCACGTGAATTA 60.321 50.000 19.3 0.0 34.43 1.40 F
3122 3224 0.842030 TCCAGTGGAAGGTGGCATCT 60.842 55.000 10.2 0.0 33.43 2.90 F
3889 5704 1.202855 AGCAGCAGAGGCAGAGAAAAA 60.203 47.619 0.0 0.0 44.61 1.94 F
5527 7560 1.218047 CGCCCGACAATCCTTCAGA 59.782 57.895 0.0 0.0 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2339 2387 0.034756 TGACGTGACATGGAACTGGG 59.965 55.000 0.00 0.0 0.00 4.45 R
2535 2636 0.251653 GGGAAAAGGGAGTGGGGAAC 60.252 60.000 0.00 0.0 0.00 3.62 R
2891 2993 1.227853 ACAACGGTGGAGGCAGTTC 60.228 57.895 4.97 0.0 0.00 3.01 R
3305 3407 0.471591 AATGGGCCACCTTCTTGCAA 60.472 50.000 9.28 0.0 37.76 4.08 R
4525 6368 0.598158 TCACAAGCACCGGTTACGTC 60.598 55.000 2.97 0.0 38.78 4.34 R
5616 7649 1.220477 GACCTGGCAGAGAAGAGGC 59.780 63.158 17.94 0.0 0.00 4.70 R
6892 9272 0.102300 GTTGCACCACAAACAGGGAC 59.898 55.000 0.00 0.0 40.82 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
490 497 2.125952 CACTGCGAGGCGACATGA 60.126 61.111 0.00 0.00 0.00 3.07
537 545 1.171308 CCTCATTGGTGCAGTCCTTG 58.829 55.000 0.00 0.00 0.00 3.61
643 651 3.414193 CCCCAGCTGGCAGATCCA 61.414 66.667 28.39 0.00 44.18 3.41
943 954 4.393778 GAGGTCGGGAGGGTGGGA 62.394 72.222 0.00 0.00 0.00 4.37
944 955 4.400251 AGGTCGGGAGGGTGGGAG 62.400 72.222 0.00 0.00 0.00 4.30
945 956 4.716977 GGTCGGGAGGGTGGGAGT 62.717 72.222 0.00 0.00 0.00 3.85
946 957 3.075641 GTCGGGAGGGTGGGAGTC 61.076 72.222 0.00 0.00 0.00 3.36
947 958 3.596799 TCGGGAGGGTGGGAGTCA 61.597 66.667 0.00 0.00 0.00 3.41
948 959 2.606519 CGGGAGGGTGGGAGTCAA 60.607 66.667 0.00 0.00 0.00 3.18
949 960 1.995626 CGGGAGGGTGGGAGTCAAT 60.996 63.158 0.00 0.00 0.00 2.57
950 961 1.609783 GGGAGGGTGGGAGTCAATG 59.390 63.158 0.00 0.00 0.00 2.82
951 962 1.077429 GGAGGGTGGGAGTCAATGC 60.077 63.158 0.00 0.00 0.00 3.56
952 963 1.685224 GAGGGTGGGAGTCAATGCA 59.315 57.895 0.00 0.00 0.00 3.96
953 964 0.038166 GAGGGTGGGAGTCAATGCAA 59.962 55.000 0.00 0.00 0.00 4.08
954 965 0.038744 AGGGTGGGAGTCAATGCAAG 59.961 55.000 0.00 0.00 0.00 4.01
955 966 0.038166 GGGTGGGAGTCAATGCAAGA 59.962 55.000 0.00 0.00 0.00 3.02
956 967 1.457346 GGTGGGAGTCAATGCAAGAG 58.543 55.000 0.00 0.00 0.00 2.85
957 968 0.807496 GTGGGAGTCAATGCAAGAGC 59.193 55.000 0.00 0.00 42.57 4.09
958 969 0.674581 TGGGAGTCAATGCAAGAGCG 60.675 55.000 0.00 0.00 46.23 5.03
959 970 1.427020 GGAGTCAATGCAAGAGCGC 59.573 57.895 0.00 0.00 46.23 5.92
960 971 1.023513 GGAGTCAATGCAAGAGCGCT 61.024 55.000 11.27 11.27 46.23 5.92
961 972 0.373024 GAGTCAATGCAAGAGCGCTC 59.627 55.000 30.01 30.01 46.23 5.03
962 973 0.321034 AGTCAATGCAAGAGCGCTCA 60.321 50.000 36.87 19.33 46.23 4.26
963 974 0.518636 GTCAATGCAAGAGCGCTCAA 59.481 50.000 36.87 20.44 46.23 3.02
964 975 0.800631 TCAATGCAAGAGCGCTCAAG 59.199 50.000 36.87 28.17 46.23 3.02
965 976 0.520404 CAATGCAAGAGCGCTCAAGT 59.480 50.000 36.87 20.08 46.23 3.16
966 977 1.733912 CAATGCAAGAGCGCTCAAGTA 59.266 47.619 36.87 27.08 46.23 2.24
967 978 2.099141 ATGCAAGAGCGCTCAAGTAA 57.901 45.000 36.87 19.39 46.23 2.24
968 979 2.099141 TGCAAGAGCGCTCAAGTAAT 57.901 45.000 36.87 14.56 46.23 1.89
969 980 2.426522 TGCAAGAGCGCTCAAGTAATT 58.573 42.857 36.87 19.71 46.23 1.40
970 981 2.813754 TGCAAGAGCGCTCAAGTAATTT 59.186 40.909 36.87 18.98 46.23 1.82
971 982 3.120199 TGCAAGAGCGCTCAAGTAATTTC 60.120 43.478 36.87 17.25 46.23 2.17
972 983 3.663908 CAAGAGCGCTCAAGTAATTTCG 58.336 45.455 36.87 12.63 0.00 3.46
1345 1357 2.632996 TCGATAGATGCGGGAATTCCTT 59.367 45.455 23.63 6.93 42.67 3.36
1350 1362 2.442087 GCGGGAATTCCTTGGGGG 60.442 66.667 23.63 7.88 35.95 5.40
1368 1380 2.633488 GGGTAGCATCTTCTGTTGGTC 58.367 52.381 0.00 0.00 0.00 4.02
1371 1383 3.307059 GGTAGCATCTTCTGTTGGTCTGT 60.307 47.826 0.00 0.00 0.00 3.41
1395 1407 4.142337 TGTTCATTCTCGCATAGGTTCGTA 60.142 41.667 0.00 0.00 0.00 3.43
1396 1408 4.848562 TCATTCTCGCATAGGTTCGTAT 57.151 40.909 0.00 0.00 0.00 3.06
1460 1472 1.996755 GCGAAACTAGCGGCAGTAC 59.003 57.895 1.45 2.09 0.00 2.73
1492 1525 4.576053 CACAATTGAAGATATGAAGGCGGA 59.424 41.667 13.59 0.00 0.00 5.54
1526 1560 6.183360 GGTCAAACTAGCCTGTTACAGTTTTT 60.183 38.462 11.68 0.79 38.75 1.94
1539 1573 2.094752 ACAGTTTTTCTTGCGTGCTTGT 60.095 40.909 0.00 0.00 0.00 3.16
1553 1587 1.160137 GCTTGTGCGGAATCAGAGTT 58.840 50.000 0.00 0.00 0.00 3.01
1554 1588 2.289382 TGCTTGTGCGGAATCAGAGTTA 60.289 45.455 0.00 0.00 43.34 2.24
1556 1590 3.424962 GCTTGTGCGGAATCAGAGTTAAC 60.425 47.826 0.00 0.00 0.00 2.01
1558 1592 4.794278 TGTGCGGAATCAGAGTTAACTA 57.206 40.909 8.42 0.00 0.00 2.24
1565 1599 5.622460 CGGAATCAGAGTTAACTACAGCACT 60.622 44.000 8.42 0.00 0.00 4.40
1585 1619 2.205022 TTCTGTTGCTGCCTTATGCT 57.795 45.000 0.00 0.00 42.00 3.79
1599 1633 4.020751 GCCTTATGCTAGATCCTGTGATCA 60.021 45.833 0.00 0.00 42.58 2.92
1600 1634 5.512060 GCCTTATGCTAGATCCTGTGATCAA 60.512 44.000 0.00 0.00 42.58 2.57
1601 1635 6.799918 GCCTTATGCTAGATCCTGTGATCAAT 60.800 42.308 0.00 0.00 42.58 2.57
1602 1636 8.748428 GCCTTATGCTAGATCCTGTGATCAATG 61.748 44.444 0.00 0.00 42.58 2.82
1646 1680 5.186942 GCATATCTGAGAGCATGATTCCAT 58.813 41.667 10.12 0.00 0.00 3.41
1650 1684 5.830000 TCTGAGAGCATGATTCCATTTTG 57.170 39.130 0.00 0.00 0.00 2.44
1660 1694 3.006752 TGATTCCATTTTGACACCTTGCC 59.993 43.478 0.00 0.00 0.00 4.52
1665 1699 4.136051 CCATTTTGACACCTTGCCATTTT 58.864 39.130 0.00 0.00 0.00 1.82
1666 1700 4.023878 CCATTTTGACACCTTGCCATTTTG 60.024 41.667 0.00 0.00 0.00 2.44
1667 1701 2.906691 TTGACACCTTGCCATTTTGG 57.093 45.000 0.00 0.00 41.55 3.28
1687 1722 3.647590 TGGCATCAGAGGCAGTCATATAA 59.352 43.478 9.71 0.00 39.34 0.98
1688 1723 4.102996 TGGCATCAGAGGCAGTCATATAAA 59.897 41.667 9.71 0.00 39.34 1.40
1693 1728 6.299805 TCAGAGGCAGTCATATAAACTGTT 57.700 37.500 15.95 8.19 44.79 3.16
1694 1729 6.711277 TCAGAGGCAGTCATATAAACTGTTT 58.289 36.000 10.98 10.98 44.79 2.83
1739 1774 3.301274 CCCTAGCTAGGCTACTTCTGTT 58.699 50.000 31.33 0.00 42.26 3.16
1745 1780 2.440539 AGGCTACTTCTGTTCACACG 57.559 50.000 0.00 0.00 0.00 4.49
1751 1786 4.210537 GCTACTTCTGTTCACACGCTAAAA 59.789 41.667 0.00 0.00 0.00 1.52
1755 1790 6.560711 ACTTCTGTTCACACGCTAAAATTTT 58.439 32.000 8.75 8.75 0.00 1.82
1796 1831 9.047947 ACTCTGTTAGTAGGATTTTAACTGGAT 57.952 33.333 0.00 0.00 36.36 3.41
1798 1833 8.265055 TCTGTTAGTAGGATTTTAACTGGATGG 58.735 37.037 0.00 0.00 31.31 3.51
1822 1857 7.389330 TGGTAGGTATATGTTTGTCAAGTGTTG 59.611 37.037 0.00 0.00 0.00 3.33
1830 1865 7.672983 ATGTTTGTCAAGTGTTGGATACTAG 57.327 36.000 0.00 0.00 37.61 2.57
1831 1866 6.588204 TGTTTGTCAAGTGTTGGATACTAGT 58.412 36.000 0.00 0.00 37.61 2.57
1832 1867 7.728148 TGTTTGTCAAGTGTTGGATACTAGTA 58.272 34.615 4.77 4.77 37.61 1.82
1833 1868 7.654520 TGTTTGTCAAGTGTTGGATACTAGTAC 59.345 37.037 4.31 0.00 37.61 2.73
1935 1970 8.121305 TCAAAAACTTCACCTACAATATGCAT 57.879 30.769 3.79 3.79 0.00 3.96
1978 2013 8.634335 TGAAACCATCAGAATTTGATAGAACA 57.366 30.769 3.74 0.00 44.76 3.18
2007 2044 8.466086 GATTGGTTTTGTCAATCAAATACTCC 57.534 34.615 10.73 0.00 45.73 3.85
2008 2045 6.339587 TGGTTTTGTCAATCAAATACTCCC 57.660 37.500 0.00 0.00 44.15 4.30
2009 2046 6.074648 TGGTTTTGTCAATCAAATACTCCCT 58.925 36.000 0.00 0.00 44.15 4.20
2010 2047 6.208599 TGGTTTTGTCAATCAAATACTCCCTC 59.791 38.462 0.00 0.00 44.15 4.30
2011 2048 6.350194 GGTTTTGTCAATCAAATACTCCCTCC 60.350 42.308 0.00 0.00 44.15 4.30
2012 2049 4.137116 TGTCAATCAAATACTCCCTCCG 57.863 45.455 0.00 0.00 0.00 4.63
2013 2050 3.517901 TGTCAATCAAATACTCCCTCCGT 59.482 43.478 0.00 0.00 0.00 4.69
2014 2051 4.120589 GTCAATCAAATACTCCCTCCGTC 58.879 47.826 0.00 0.00 0.00 4.79
2015 2052 3.134081 TCAATCAAATACTCCCTCCGTCC 59.866 47.826 0.00 0.00 0.00 4.79
2016 2053 1.492764 TCAAATACTCCCTCCGTCCC 58.507 55.000 0.00 0.00 0.00 4.46
2017 2054 1.200519 CAAATACTCCCTCCGTCCCA 58.799 55.000 0.00 0.00 0.00 4.37
2018 2055 1.557832 CAAATACTCCCTCCGTCCCAA 59.442 52.381 0.00 0.00 0.00 4.12
2019 2056 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
2020 2057 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
2021 2058 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2022 2059 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2023 2060 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2024 2061 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2025 2062 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2026 2063 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2027 2064 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
2028 2065 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
2029 2066 3.007635 CTCCGTCCCAAAATAAGTGACC 58.992 50.000 0.00 0.00 0.00 4.02
2030 2067 2.089201 CCGTCCCAAAATAAGTGACCC 58.911 52.381 0.00 0.00 0.00 4.46
2031 2068 2.553466 CCGTCCCAAAATAAGTGACCCA 60.553 50.000 0.00 0.00 0.00 4.51
2032 2069 3.150767 CGTCCCAAAATAAGTGACCCAA 58.849 45.455 0.00 0.00 0.00 4.12
2033 2070 3.057806 CGTCCCAAAATAAGTGACCCAAC 60.058 47.826 0.00 0.00 0.00 3.77
2034 2071 4.149598 GTCCCAAAATAAGTGACCCAACT 58.850 43.478 0.00 0.00 0.00 3.16
2035 2072 4.587262 GTCCCAAAATAAGTGACCCAACTT 59.413 41.667 0.00 0.00 42.89 2.66
2036 2073 5.069914 GTCCCAAAATAAGTGACCCAACTTT 59.930 40.000 0.00 0.00 40.77 2.66
2037 2074 5.069781 TCCCAAAATAAGTGACCCAACTTTG 59.930 40.000 0.00 0.00 40.77 2.77
2038 2075 5.163353 CCCAAAATAAGTGACCCAACTTTGT 60.163 40.000 0.00 0.00 40.77 2.83
2039 2076 6.041069 CCCAAAATAAGTGACCCAACTTTGTA 59.959 38.462 0.00 0.00 40.77 2.41
2040 2077 6.921307 CCAAAATAAGTGACCCAACTTTGTAC 59.079 38.462 0.00 0.00 40.77 2.90
2041 2078 7.201875 CCAAAATAAGTGACCCAACTTTGTACT 60.202 37.037 0.00 0.00 40.77 2.73
2042 2079 8.842280 CAAAATAAGTGACCCAACTTTGTACTA 58.158 33.333 0.00 0.00 40.77 1.82
2043 2080 8.983702 AAATAAGTGACCCAACTTTGTACTAA 57.016 30.769 0.00 0.00 40.77 2.24
2044 2081 7.974482 ATAAGTGACCCAACTTTGTACTAAC 57.026 36.000 0.00 0.00 40.77 2.34
2045 2082 5.625568 AGTGACCCAACTTTGTACTAACT 57.374 39.130 0.00 0.00 0.00 2.24
2046 2083 5.997843 AGTGACCCAACTTTGTACTAACTT 58.002 37.500 0.00 0.00 0.00 2.66
2047 2084 6.420638 AGTGACCCAACTTTGTACTAACTTT 58.579 36.000 0.00 0.00 0.00 2.66
2048 2085 7.567458 AGTGACCCAACTTTGTACTAACTTTA 58.433 34.615 0.00 0.00 0.00 1.85
2049 2086 7.713942 AGTGACCCAACTTTGTACTAACTTTAG 59.286 37.037 0.00 0.00 36.82 1.85
2050 2087 7.496920 GTGACCCAACTTTGTACTAACTTTAGT 59.503 37.037 6.85 6.85 45.39 2.24
2051 2088 8.703743 TGACCCAACTTTGTACTAACTTTAGTA 58.296 33.333 4.98 4.98 43.36 1.82
2077 2114 8.349983 ACAATGTTAGTACAAAATTGAGTCACC 58.650 33.333 19.33 0.00 37.91 4.02
2078 2115 8.567948 CAATGTTAGTACAAAATTGAGTCACCT 58.432 33.333 12.15 0.00 37.91 4.00
2079 2116 9.787435 AATGTTAGTACAAAATTGAGTCACCTA 57.213 29.630 0.00 0.00 37.91 3.08
2080 2117 9.959721 ATGTTAGTACAAAATTGAGTCACCTAT 57.040 29.630 0.00 0.00 37.91 2.57
2081 2118 9.787435 TGTTAGTACAAAATTGAGTCACCTATT 57.213 29.630 0.00 0.00 0.00 1.73
2085 2122 8.576442 AGTACAAAATTGAGTCACCTATTTTGG 58.424 33.333 28.46 18.25 45.43 3.28
2086 2123 6.758254 ACAAAATTGAGTCACCTATTTTGGG 58.242 36.000 28.46 15.64 45.43 4.12
2087 2124 6.553100 ACAAAATTGAGTCACCTATTTTGGGA 59.447 34.615 28.46 1.96 45.43 4.37
2088 2125 6.590234 AAATTGAGTCACCTATTTTGGGAC 57.410 37.500 0.00 0.00 0.00 4.46
2089 2126 3.328382 TGAGTCACCTATTTTGGGACG 57.672 47.619 0.00 0.00 34.61 4.79
2090 2127 2.027561 TGAGTCACCTATTTTGGGACGG 60.028 50.000 0.00 0.00 34.61 4.79
2091 2128 2.235402 GAGTCACCTATTTTGGGACGGA 59.765 50.000 0.00 0.00 34.61 4.69
2092 2129 2.236395 AGTCACCTATTTTGGGACGGAG 59.764 50.000 0.00 0.00 34.61 4.63
2093 2130 1.557832 TCACCTATTTTGGGACGGAGG 59.442 52.381 0.00 0.00 0.00 4.30
2094 2131 0.916809 ACCTATTTTGGGACGGAGGG 59.083 55.000 0.00 0.00 0.00 4.30
2095 2132 1.209621 CCTATTTTGGGACGGAGGGA 58.790 55.000 0.00 0.00 0.00 4.20
2096 2133 1.141053 CCTATTTTGGGACGGAGGGAG 59.859 57.143 0.00 0.00 0.00 4.30
2097 2134 1.838077 CTATTTTGGGACGGAGGGAGT 59.162 52.381 0.00 0.00 0.00 3.85
2098 2135 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2106 2143 4.140853 TGGGACGGAGGGAGTAATATACTT 60.141 45.833 0.00 0.00 39.59 2.24
2140 2177 4.634184 ATAACACACTAGCTGAGTACCG 57.366 45.455 0.00 0.00 35.64 4.02
2211 2248 9.736023 AAAACAATGTTCTGTCTGTCTTTATTC 57.264 29.630 0.00 0.00 0.00 1.75
2256 2293 3.158537 TTCTGCTTCCGCCACGTGA 62.159 57.895 19.30 0.00 34.43 4.35
2260 2297 0.320858 TGCTTCCGCCACGTGAATTA 60.321 50.000 19.30 0.00 34.43 1.40
2339 2387 3.929002 TGCCTCCATTGCAGCATC 58.071 55.556 0.00 0.00 34.05 3.91
2359 2414 1.542328 CCCAGTTCCATGTCACGTCAA 60.542 52.381 0.00 0.00 0.00 3.18
2384 2442 7.490962 TCGACACTGTTTTCAACTTTATCAT 57.509 32.000 0.00 0.00 0.00 2.45
2388 2446 9.774742 GACACTGTTTTCAACTTTATCATATCC 57.225 33.333 0.00 0.00 0.00 2.59
2422 2480 1.065199 AGTCACTATGGTGGTGCATGG 60.065 52.381 9.56 0.00 43.17 3.66
2507 2608 1.075601 ACCATTCCTTTCCTGCCAGA 58.924 50.000 0.00 0.00 0.00 3.86
2509 2610 1.272092 CCATTCCTTTCCTGCCAGACA 60.272 52.381 0.00 0.00 0.00 3.41
2535 2636 2.601763 GCTTCATCCAACCTTACGTACG 59.398 50.000 15.01 15.01 0.00 3.67
2558 2659 1.632589 CCCACTCCCTTTTCCCTTTG 58.367 55.000 0.00 0.00 0.00 2.77
2559 2660 1.146982 CCCACTCCCTTTTCCCTTTGA 59.853 52.381 0.00 0.00 0.00 2.69
2560 2661 2.225369 CCCACTCCCTTTTCCCTTTGAT 60.225 50.000 0.00 0.00 0.00 2.57
2564 2665 5.511373 CCACTCCCTTTTCCCTTTGATTTTC 60.511 44.000 0.00 0.00 0.00 2.29
2581 2682 1.330155 TTCCCCCTCCTATCTCTGGT 58.670 55.000 0.00 0.00 0.00 4.00
2623 2724 3.782656 AAACCGTCTTAACTGTCCCAT 57.217 42.857 0.00 0.00 0.00 4.00
2629 2730 5.012354 ACCGTCTTAACTGTCCCATCTTTTA 59.988 40.000 0.00 0.00 0.00 1.52
2634 2735 9.010029 GTCTTAACTGTCCCATCTTTTATTGAA 57.990 33.333 0.00 0.00 0.00 2.69
2692 2793 7.973944 GCCAATAAACTCTTACCAAATAAGTGG 59.026 37.037 0.00 0.00 44.92 4.00
2722 2824 9.653287 CTATTTAGATAATAAATCACGGGCAGA 57.347 33.333 0.00 0.00 0.00 4.26
2783 2885 4.524328 GGGAAGGTAAATCATGGGCTAATG 59.476 45.833 0.00 0.00 0.00 1.90
2812 2914 9.337396 CTAGAATATTTATACCCTGTTGCAACA 57.663 33.333 29.36 29.36 37.37 3.33
2841 2943 9.148104 CGGGCAATTATCTAGTAATAACCTAAC 57.852 37.037 0.00 0.00 32.70 2.34
2866 2968 7.984391 CAAACAGATAGTGTGTGCCATATTTA 58.016 34.615 0.00 0.00 37.58 1.40
2891 2993 1.329171 CCTCTCTGCTCACCCCTCAG 61.329 65.000 0.00 0.00 0.00 3.35
2905 3007 1.079543 CTCAGAACTGCCTCCACCG 60.080 63.158 0.00 0.00 0.00 4.94
2969 3071 9.683069 AATTGTGTTTCTTGTTGCTTCTTATAG 57.317 29.630 0.00 0.00 0.00 1.31
2996 3098 3.475566 TCAGTGTATAAGAGGGCATGC 57.524 47.619 9.90 9.90 0.00 4.06
3030 3132 9.197306 GAAATTATTAAATAGAAGTGGGGTGGT 57.803 33.333 0.00 0.00 0.00 4.16
3122 3224 0.842030 TCCAGTGGAAGGTGGCATCT 60.842 55.000 10.20 0.00 33.43 2.90
3125 3227 0.842030 AGTGGAAGGTGGCATCTCCA 60.842 55.000 12.94 12.94 44.18 3.86
3136 3238 3.168292 TGGCATCTCCATCGATACTGAT 58.832 45.455 0.00 0.00 40.72 2.90
3256 3358 8.952278 TCATTTATGCTAGTTTGAAACGGTATT 58.048 29.630 1.97 0.00 36.23 1.89
3383 3485 9.480053 AGAACATTTTATTTTGTGTTGGATCAG 57.520 29.630 0.00 0.00 35.15 2.90
3417 3519 4.756642 TGAACTTCAGCAATGAGTAGTTGG 59.243 41.667 0.00 0.00 0.00 3.77
3522 3624 4.914983 AGGAGATCAACTTCAGCAATGAA 58.085 39.130 0.00 0.00 0.00 2.57
3565 3667 3.434637 GCTAATTGCAACGGGTGTATTG 58.565 45.455 0.00 0.00 42.31 1.90
3775 5590 9.336462 AGGACATTATCATCTGAATAAGGATCT 57.664 33.333 0.00 0.00 0.00 2.75
3803 5618 3.924507 GCGACAAGCCCCATTGAT 58.075 55.556 0.00 0.00 40.81 2.57
3804 5619 1.434696 GCGACAAGCCCCATTGATG 59.565 57.895 0.00 0.00 40.81 3.07
3805 5620 1.315257 GCGACAAGCCCCATTGATGT 61.315 55.000 0.00 0.00 40.81 3.06
3844 5659 6.708054 CCTGTTAAGAGTCTGACAAGTGAAAT 59.292 38.462 10.88 0.00 0.00 2.17
3847 5662 7.224753 TGTTAAGAGTCTGACAAGTGAAATCAC 59.775 37.037 10.88 5.40 46.77 3.06
3889 5704 1.202855 AGCAGCAGAGGCAGAGAAAAA 60.203 47.619 0.00 0.00 44.61 1.94
3894 5709 2.029649 GCAGAGGCAGAGAAAAATGCAA 60.030 45.455 0.00 0.00 44.37 4.08
3998 5813 2.825532 CTCTAGCTCTAGGAATCAGGCC 59.174 54.545 0.00 0.00 34.06 5.19
4004 5819 3.737850 CTCTAGGAATCAGGCCACATTC 58.262 50.000 15.33 15.33 0.00 2.67
4216 6034 6.131961 ACCATAGAAAAGCTGCCAGATTTAT 58.868 36.000 8.56 3.53 31.92 1.40
4239 6057 5.690464 AGAGAGCTTCACAACCTGAATAT 57.310 39.130 0.00 0.00 38.26 1.28
4323 6141 3.308401 AGCTCCACCAAAACAGGAAAAT 58.692 40.909 0.00 0.00 0.00 1.82
4368 6187 5.503683 CGAGACGACCGTACTAAATTCAGAT 60.504 44.000 0.00 0.00 0.00 2.90
4403 6222 2.159517 GCTCAGCTACAACCGGAAATTG 60.160 50.000 9.46 4.81 0.00 2.32
4420 6239 6.582295 CGGAAATTGTAGTTCATGAAAACCAG 59.418 38.462 10.35 0.00 0.00 4.00
4441 6260 5.178252 CCAGTGTAACACTTGAGATGTTCTG 59.822 44.000 0.00 0.00 42.59 3.02
4445 6264 8.367911 AGTGTAACACTTGAGATGTTCTGATTA 58.632 33.333 0.00 0.00 42.59 1.75
4517 6360 9.739276 ACTGATGGAAGATATGAAAGTTGTTAA 57.261 29.630 0.00 0.00 0.00 2.01
4525 6368 7.590279 AGATATGAAAGTTGTTAAAACACCCG 58.410 34.615 0.00 0.00 38.92 5.28
4658 6687 2.485124 CCCTTCAAGTGGCATGCAAAAA 60.485 45.455 21.36 3.71 0.00 1.94
4757 6787 8.453238 TGTCTTGTACAAGGCTACATTAAAAA 57.547 30.769 33.51 12.50 43.12 1.94
4822 6852 4.575645 AGAAACAATTTGTTGGTGGCAATG 59.424 37.500 15.17 0.00 40.14 2.82
4994 7027 2.433970 CTCTTTCTAAGCTCCCAGAGGG 59.566 54.545 0.00 0.00 46.11 4.30
5122 7155 3.173599 CGTATGAAGCTTGCAACAATGG 58.826 45.455 2.10 0.00 0.00 3.16
5139 7172 2.842208 TGGAAGTTTTCAGCAACACG 57.158 45.000 0.00 0.00 0.00 4.49
5276 7309 2.992124 TTGACCCGTCAGAAAGTGAA 57.008 45.000 0.00 0.00 41.13 3.18
5295 7328 3.137544 TGAAAAAGCCTCCAGAGTAACCA 59.862 43.478 0.00 0.00 0.00 3.67
5328 7361 3.119173 CCAACCACGTAATCATGCCAAAT 60.119 43.478 0.00 0.00 0.00 2.32
5339 7372 5.601583 ATCATGCCAAATATTGCAGTTCA 57.398 34.783 6.61 0.00 41.46 3.18
5378 7411 2.739943 TGTCATGGAGGAGGTAGTGAG 58.260 52.381 0.00 0.00 0.00 3.51
5438 7471 8.908903 ACAACTCAACATTCCACTTATGTTTTA 58.091 29.630 0.00 0.00 42.02 1.52
5473 7506 3.635268 CTGCTTCCCCAGTGCCTCC 62.635 68.421 0.00 0.00 0.00 4.30
5527 7560 1.218047 CGCCCGACAATCCTTCAGA 59.782 57.895 0.00 0.00 0.00 3.27
5598 7631 6.111382 TGCTACAAGAAGAATGATCAAGGAG 58.889 40.000 0.00 0.00 0.00 3.69
5616 7649 6.093495 TCAAGGAGACAATATTTTTAGTGGCG 59.907 38.462 0.00 0.00 0.00 5.69
5626 7659 1.267121 TTTAGTGGCGCCTCTTCTCT 58.733 50.000 33.65 19.51 0.00 3.10
5628 7661 1.949847 TAGTGGCGCCTCTTCTCTGC 61.950 60.000 33.65 9.82 0.00 4.26
5704 7737 5.186797 CACCACCTCCTCCTTCAGATATATC 59.813 48.000 4.42 4.42 0.00 1.63
5712 7745 7.124721 TCCTCCTTCAGATATATCATCTCCAG 58.875 42.308 15.08 4.13 0.00 3.86
6009 8042 4.460382 AGGTTCATGAAATGTTTGCTCGAT 59.540 37.500 10.35 0.00 46.80 3.59
6069 8102 2.088423 TGGGTGACAACAAGTGTGAAC 58.912 47.619 0.00 0.00 41.96 3.18
6094 8127 4.411013 CAGGAAAAAGGAAGTGAGGGATT 58.589 43.478 0.00 0.00 0.00 3.01
6157 8190 6.985188 TTTGAAGTCCTGTGCTGATAATAC 57.015 37.500 0.00 0.00 0.00 1.89
6158 8191 5.939764 TGAAGTCCTGTGCTGATAATACT 57.060 39.130 0.00 0.00 0.00 2.12
6182 8218 2.031120 CTGGGTCTGGAAAGCAACAAA 58.969 47.619 0.00 0.00 0.00 2.83
6239 8276 5.827797 TGAGGTTGAAGATGTTATTATGGCC 59.172 40.000 0.00 0.00 0.00 5.36
6250 8287 2.781403 ATTATGGCCAGGCTGGAAAT 57.219 45.000 37.07 27.67 40.96 2.17
6311 8476 0.947244 CTGTTGAAGGTGTGGAGCAC 59.053 55.000 0.00 0.00 46.97 4.40
6344 8509 0.099791 GGCTGCGAGTCTCTAGTCAC 59.900 60.000 0.00 0.00 0.00 3.67
6455 8620 3.304123 CCATCCTGATCTCGTCGTCTAAC 60.304 52.174 0.00 0.00 0.00 2.34
6464 8629 1.067364 TCGTCGTCTAACAAAGCACCA 59.933 47.619 0.00 0.00 0.00 4.17
6527 8692 2.092538 AGATCATTCAGGGTTGGCAGAG 60.093 50.000 0.00 0.00 0.00 3.35
6601 8766 1.594397 GGCACAAAAGACTGCAAAAGC 59.406 47.619 0.00 0.00 34.90 3.51
6681 8846 6.380079 AAATAAAGTGTCCCATCTCAGAGT 57.620 37.500 0.00 0.00 0.00 3.24
6892 9272 4.449068 CGATGTTATCTTCTGATTTCCCCG 59.551 45.833 0.00 0.00 34.32 5.73
6933 9314 3.261897 CCTTGCCATATCTAGGGATCGTT 59.738 47.826 0.00 0.00 33.71 3.85
6964 9345 3.589988 CTTGGTGAGTAGCTAGGTGTTG 58.410 50.000 4.27 0.00 0.00 3.33
6965 9346 1.275291 TGGTGAGTAGCTAGGTGTTGC 59.725 52.381 4.27 0.00 0.00 4.17
7017 9398 0.600255 GGCATTCGGACGGGTAGATG 60.600 60.000 0.00 0.00 0.00 2.90
7022 9403 0.819582 TCGGACGGGTAGATGGTTTC 59.180 55.000 0.00 0.00 0.00 2.78
7068 9450 1.003718 CCTCGAACTGTGGGGGAAC 60.004 63.158 0.00 0.00 0.00 3.62
7083 9465 2.689983 GGGGAACTATCATGTTTGCAGG 59.310 50.000 0.00 0.00 0.00 4.85
7093 9475 2.115910 TTTGCAGGGCAGGGTCTG 59.884 61.111 0.00 0.00 40.61 3.51
7100 9482 1.228552 GGGCAGGGTCTGAAGCAAA 60.229 57.895 0.00 0.00 32.44 3.68
7114 9496 1.377202 GCAAACCCCTGATCGCTGA 60.377 57.895 0.00 0.00 0.00 4.26
7155 9537 1.287425 CGGTAAGACGGATTTCTGCC 58.713 55.000 0.00 0.00 0.00 4.85
7209 9595 4.670227 GATGGCTAATAGGCGATCAAAC 57.330 45.455 9.31 0.00 44.78 2.93
7246 9643 2.508891 GCTCGATCGTGTTGCTCCG 61.509 63.158 15.94 0.00 0.00 4.63
7260 9657 1.901650 GCTCCGAAACGTTGAGGCAG 61.902 60.000 15.21 13.79 0.00 4.85
7262 9659 0.320374 TCCGAAACGTTGAGGCAGAT 59.680 50.000 15.21 0.00 0.00 2.90
7263 9660 1.156736 CCGAAACGTTGAGGCAGATT 58.843 50.000 0.00 0.00 0.00 2.40
7264 9661 1.535462 CCGAAACGTTGAGGCAGATTT 59.465 47.619 0.00 0.00 0.00 2.17
7286 9683 9.695526 GATTTTTGATATGCTATTACATTGGCA 57.304 29.630 0.00 0.00 39.06 4.92
7307 9707 1.475213 GGAACCTGCCATACCTACTGC 60.475 57.143 0.00 0.00 0.00 4.40
7308 9708 0.178068 AACCTGCCATACCTACTGCG 59.822 55.000 0.00 0.00 0.00 5.18
7339 9739 2.605818 TCGTTTCTCTGTTTGGTCAACG 59.394 45.455 0.00 0.00 38.36 4.10
7346 9746 2.616376 TCTGTTTGGTCAACGGATTGTG 59.384 45.455 0.00 0.00 44.59 3.33
7394 9809 2.139323 ACATCACCTACTCGCACCTA 57.861 50.000 0.00 0.00 0.00 3.08
7430 9845 1.375908 GAACCTGCGAGCCATGTGA 60.376 57.895 0.00 0.00 0.00 3.58
7450 9865 5.770162 TGTGATGTTAGTTCTGAGAGTGAGA 59.230 40.000 0.00 0.00 0.00 3.27
7492 9907 3.567797 GATGGCTGCCGCTCGTTC 61.568 66.667 14.98 0.32 36.09 3.95
7496 9911 3.044305 GCTGCCGCTCGTTCACTT 61.044 61.111 0.00 0.00 0.00 3.16
7624 10042 1.151777 CCGTGCCGTGCTTATACAGG 61.152 60.000 0.00 0.00 0.00 4.00
7626 10044 4.532490 GCCGTGCTTATACAGGCA 57.468 55.556 0.00 0.00 46.48 4.75
7736 10159 6.652205 AACCAGAGGGGAATAATAAGTCAA 57.348 37.500 0.00 0.00 41.15 3.18
7738 10161 5.491078 ACCAGAGGGGAATAATAAGTCAACA 59.509 40.000 0.00 0.00 41.15 3.33
7846 10269 2.839629 CAGCAATAGACACGGTGCA 58.160 52.632 8.30 0.00 39.50 4.57
7850 10273 1.016627 CAATAGACACGGTGCATGGG 58.983 55.000 8.30 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.674895 GAATCTGTTGAGCAGGCGGT 60.675 55.000 0.00 0.00 45.08 5.68
258 259 0.251916 CTTGGAGGTGGCGGTTGATA 59.748 55.000 0.00 0.00 0.00 2.15
537 545 2.362077 TCTTGCAAAAGGGCACTTTCTC 59.638 45.455 15.75 10.01 45.85 2.87
643 651 1.539124 GGAAGAGGAGGGTGGGTGT 60.539 63.158 0.00 0.00 0.00 4.16
927 938 4.400251 CTCCCACCCTCCCGACCT 62.400 72.222 0.00 0.00 0.00 3.85
934 945 0.038166 TTGCATTGACTCCCACCCTC 59.962 55.000 0.00 0.00 0.00 4.30
935 946 0.038744 CTTGCATTGACTCCCACCCT 59.961 55.000 0.00 0.00 0.00 4.34
936 947 0.038166 TCTTGCATTGACTCCCACCC 59.962 55.000 0.00 0.00 0.00 4.61
937 948 1.457346 CTCTTGCATTGACTCCCACC 58.543 55.000 0.00 0.00 0.00 4.61
938 949 0.807496 GCTCTTGCATTGACTCCCAC 59.193 55.000 0.00 0.00 39.41 4.61
939 950 0.674581 CGCTCTTGCATTGACTCCCA 60.675 55.000 0.00 0.00 39.64 4.37
940 951 1.986575 GCGCTCTTGCATTGACTCCC 61.987 60.000 0.00 0.00 39.64 4.30
941 952 1.023513 AGCGCTCTTGCATTGACTCC 61.024 55.000 2.64 0.00 39.64 3.85
942 953 0.373024 GAGCGCTCTTGCATTGACTC 59.627 55.000 29.88 0.00 39.64 3.36
943 954 0.321034 TGAGCGCTCTTGCATTGACT 60.321 50.000 35.27 0.00 39.64 3.41
944 955 0.518636 TTGAGCGCTCTTGCATTGAC 59.481 50.000 35.27 8.72 39.64 3.18
945 956 0.800631 CTTGAGCGCTCTTGCATTGA 59.199 50.000 35.27 12.31 39.64 2.57
946 957 0.520404 ACTTGAGCGCTCTTGCATTG 59.480 50.000 35.27 19.19 39.64 2.82
947 958 2.099141 TACTTGAGCGCTCTTGCATT 57.901 45.000 35.27 17.04 39.64 3.56
948 959 2.099141 TTACTTGAGCGCTCTTGCAT 57.901 45.000 35.27 19.33 39.64 3.96
949 960 2.099141 ATTACTTGAGCGCTCTTGCA 57.901 45.000 35.27 15.72 39.64 4.08
950 961 3.420828 GAAATTACTTGAGCGCTCTTGC 58.579 45.455 35.27 16.96 0.00 4.01
951 962 3.367932 TCGAAATTACTTGAGCGCTCTTG 59.632 43.478 35.27 27.96 0.00 3.02
952 963 3.368236 GTCGAAATTACTTGAGCGCTCTT 59.632 43.478 35.27 20.75 0.00 2.85
953 964 2.924290 GTCGAAATTACTTGAGCGCTCT 59.076 45.455 35.27 19.88 0.00 4.09
954 965 2.029365 GGTCGAAATTACTTGAGCGCTC 59.971 50.000 30.42 30.42 0.00 5.03
955 966 2.000447 GGTCGAAATTACTTGAGCGCT 59.000 47.619 11.27 11.27 0.00 5.92
956 967 1.062148 GGGTCGAAATTACTTGAGCGC 59.938 52.381 0.00 0.00 0.00 5.92
957 968 1.664151 GGGGTCGAAATTACTTGAGCG 59.336 52.381 0.00 0.00 0.00 5.03
958 969 2.706890 TGGGGTCGAAATTACTTGAGC 58.293 47.619 0.00 0.00 0.00 4.26
959 970 4.324267 AGTTGGGGTCGAAATTACTTGAG 58.676 43.478 0.00 0.00 0.00 3.02
960 971 4.320870 GAGTTGGGGTCGAAATTACTTGA 58.679 43.478 0.00 0.00 0.00 3.02
961 972 3.439129 GGAGTTGGGGTCGAAATTACTTG 59.561 47.826 0.00 0.00 0.00 3.16
962 973 3.560668 GGGAGTTGGGGTCGAAATTACTT 60.561 47.826 0.00 0.00 0.00 2.24
963 974 2.026542 GGGAGTTGGGGTCGAAATTACT 60.027 50.000 0.00 0.00 0.00 2.24
964 975 2.362736 GGGAGTTGGGGTCGAAATTAC 58.637 52.381 0.00 0.00 0.00 1.89
965 976 1.282738 GGGGAGTTGGGGTCGAAATTA 59.717 52.381 0.00 0.00 0.00 1.40
966 977 0.039180 GGGGAGTTGGGGTCGAAATT 59.961 55.000 0.00 0.00 0.00 1.82
967 978 1.137594 TGGGGAGTTGGGGTCGAAAT 61.138 55.000 0.00 0.00 0.00 2.17
968 979 1.354168 TTGGGGAGTTGGGGTCGAAA 61.354 55.000 0.00 0.00 0.00 3.46
969 980 1.770927 TTGGGGAGTTGGGGTCGAA 60.771 57.895 0.00 0.00 0.00 3.71
970 981 2.122324 TTGGGGAGTTGGGGTCGA 60.122 61.111 0.00 0.00 0.00 4.20
971 982 2.351276 CTTGGGGAGTTGGGGTCG 59.649 66.667 0.00 0.00 0.00 4.79
972 983 2.035783 GCTTGGGGAGTTGGGGTC 59.964 66.667 0.00 0.00 0.00 4.46
1067 1079 2.042230 GGCGGTAGAGAAGGGGGA 60.042 66.667 0.00 0.00 0.00 4.81
1345 1357 1.281867 CAACAGAAGATGCTACCCCCA 59.718 52.381 0.00 0.00 0.00 4.96
1350 1362 3.931578 ACAGACCAACAGAAGATGCTAC 58.068 45.455 0.00 0.00 0.00 3.58
1368 1380 3.935203 ACCTATGCGAGAATGAACAACAG 59.065 43.478 0.00 0.00 0.00 3.16
1371 1383 3.616821 CGAACCTATGCGAGAATGAACAA 59.383 43.478 0.00 0.00 0.00 2.83
1395 1407 3.627577 GCATCGGTTCACCTAACAATCAT 59.372 43.478 0.00 0.00 40.08 2.45
1396 1408 3.006940 GCATCGGTTCACCTAACAATCA 58.993 45.455 0.00 0.00 40.08 2.57
1443 1455 2.662150 GGTACTGCCGCTAGTTTCG 58.338 57.895 0.00 0.00 32.19 3.46
1460 1472 4.621068 ATCTTCAATTGTGCACATACGG 57.379 40.909 22.39 10.92 0.00 4.02
1462 1474 7.859377 CCTTCATATCTTCAATTGTGCACATAC 59.141 37.037 22.39 0.00 0.00 2.39
1492 1525 4.943705 CAGGCTAGTTTGACCATGTACAAT 59.056 41.667 0.00 0.00 0.00 2.71
1526 1560 3.648982 CCGCACAAGCACGCAAGA 61.649 61.111 0.00 0.00 42.27 3.02
1539 1573 4.744570 CTGTAGTTAACTCTGATTCCGCA 58.255 43.478 12.39 0.00 0.00 5.69
1599 1633 0.116940 AGCCAACCCCATTGTCCATT 59.883 50.000 0.00 0.00 36.47 3.16
1600 1634 0.615544 CAGCCAACCCCATTGTCCAT 60.616 55.000 0.00 0.00 36.47 3.41
1601 1635 1.228831 CAGCCAACCCCATTGTCCA 60.229 57.895 0.00 0.00 36.47 4.02
1602 1636 2.649129 GCAGCCAACCCCATTGTCC 61.649 63.158 0.00 0.00 36.47 4.02
1603 1637 1.607467 AGCAGCCAACCCCATTGTC 60.607 57.895 0.00 0.00 36.47 3.18
1604 1638 1.909781 CAGCAGCCAACCCCATTGT 60.910 57.895 0.00 0.00 36.47 2.71
1605 1639 2.652095 CCAGCAGCCAACCCCATTG 61.652 63.158 0.00 0.00 38.12 2.82
1627 1661 6.039493 GTCAAAATGGAATCATGCTCTCAGAT 59.961 38.462 0.00 0.00 33.18 2.90
1646 1680 3.539604 CCAAAATGGCAAGGTGTCAAAA 58.460 40.909 0.00 0.00 34.67 2.44
1660 1694 1.822990 ACTGCCTCTGATGCCAAAATG 59.177 47.619 2.45 0.00 0.00 2.32
1665 1699 1.499368 TATGACTGCCTCTGATGCCA 58.501 50.000 2.45 0.00 0.00 4.92
1666 1700 2.855209 ATATGACTGCCTCTGATGCC 57.145 50.000 2.45 0.00 0.00 4.40
1667 1701 5.178996 CAGTTTATATGACTGCCTCTGATGC 59.821 44.000 7.78 0.00 38.20 3.91
1668 1702 6.286758 ACAGTTTATATGACTGCCTCTGATG 58.713 40.000 16.55 0.00 46.53 3.07
1701 1736 0.387565 GGGCTCGGCTCTTAGAGAAG 59.612 60.000 14.14 7.76 36.65 2.85
1703 1738 0.844660 TAGGGCTCGGCTCTTAGAGA 59.155 55.000 14.14 0.00 34.72 3.10
1706 1741 1.663173 GCTAGGGCTCGGCTCTTAG 59.337 63.158 3.53 1.98 34.72 2.18
1707 1742 3.857764 GCTAGGGCTCGGCTCTTA 58.142 61.111 3.53 0.00 34.72 2.10
1735 1770 6.198687 TCTCAAAATTTTAGCGTGTGAACAG 58.801 36.000 2.44 0.00 0.00 3.16
1739 1774 5.212194 GCTTCTCAAAATTTTAGCGTGTGA 58.788 37.500 2.44 0.00 0.00 3.58
1755 1790 8.982091 ACTAACAGAGTATAGTATGCTTCTCA 57.018 34.615 2.01 0.00 36.27 3.27
1796 1831 7.011499 ACACTTGACAAACATATACCTACCA 57.989 36.000 0.00 0.00 0.00 3.25
1798 1833 7.604927 TCCAACACTTGACAAACATATACCTAC 59.395 37.037 0.00 0.00 0.00 3.18
1830 1865 7.819900 TGCATCTTCTTTTCTTCTCTAAGGTAC 59.180 37.037 0.00 0.00 33.22 3.34
1831 1866 7.907389 TGCATCTTCTTTTCTTCTCTAAGGTA 58.093 34.615 0.00 0.00 33.22 3.08
1832 1867 6.773638 TGCATCTTCTTTTCTTCTCTAAGGT 58.226 36.000 0.00 0.00 33.22 3.50
1833 1868 7.102346 TCTGCATCTTCTTTTCTTCTCTAAGG 58.898 38.462 0.00 0.00 33.22 2.69
1935 1970 7.440198 TGGTTTCATTATTTCTTGCAATGTCA 58.560 30.769 0.00 0.00 32.64 3.58
1969 2004 8.637099 TGACAAAACCAATCAATTGTTCTATCA 58.363 29.630 5.13 0.00 36.22 2.15
2004 2041 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2005 2042 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2006 2043 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
2007 2044 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2008 2045 3.007635 GGTCACTTATTTTGGGACGGAG 58.992 50.000 0.00 0.00 0.00 4.63
2009 2046 2.290450 GGGTCACTTATTTTGGGACGGA 60.290 50.000 0.00 0.00 0.00 4.69
2010 2047 2.089201 GGGTCACTTATTTTGGGACGG 58.911 52.381 0.00 0.00 0.00 4.79
2011 2048 2.785562 TGGGTCACTTATTTTGGGACG 58.214 47.619 0.00 0.00 0.00 4.79
2012 2049 4.149598 AGTTGGGTCACTTATTTTGGGAC 58.850 43.478 0.00 0.00 0.00 4.46
2013 2050 4.463050 AGTTGGGTCACTTATTTTGGGA 57.537 40.909 0.00 0.00 0.00 4.37
2014 2051 5.163353 ACAAAGTTGGGTCACTTATTTTGGG 60.163 40.000 0.00 0.00 35.87 4.12
2015 2052 5.912892 ACAAAGTTGGGTCACTTATTTTGG 58.087 37.500 0.00 0.00 35.87 3.28
2016 2053 7.712797 AGTACAAAGTTGGGTCACTTATTTTG 58.287 34.615 0.00 0.00 35.87 2.44
2017 2054 7.891498 AGTACAAAGTTGGGTCACTTATTTT 57.109 32.000 0.00 0.00 35.87 1.82
2018 2055 8.843262 GTTAGTACAAAGTTGGGTCACTTATTT 58.157 33.333 0.00 0.00 35.87 1.40
2019 2056 8.215736 AGTTAGTACAAAGTTGGGTCACTTATT 58.784 33.333 0.00 0.00 35.87 1.40
2020 2057 7.742767 AGTTAGTACAAAGTTGGGTCACTTAT 58.257 34.615 0.00 0.00 35.87 1.73
2021 2058 7.128234 AGTTAGTACAAAGTTGGGTCACTTA 57.872 36.000 0.00 0.00 35.87 2.24
2022 2059 5.997843 AGTTAGTACAAAGTTGGGTCACTT 58.002 37.500 0.00 0.00 38.74 3.16
2023 2060 5.625568 AGTTAGTACAAAGTTGGGTCACT 57.374 39.130 0.00 0.00 0.00 3.41
2024 2061 6.688637 AAAGTTAGTACAAAGTTGGGTCAC 57.311 37.500 0.00 0.00 0.00 3.67
2025 2062 7.567458 ACTAAAGTTAGTACAAAGTTGGGTCA 58.433 34.615 1.81 0.00 41.92 4.02
2051 2088 8.349983 GGTGACTCAATTTTGTACTAACATTGT 58.650 33.333 16.26 0.00 34.97 2.71
2052 2089 8.567948 AGGTGACTCAATTTTGTACTAACATTG 58.432 33.333 13.36 13.36 32.90 2.82
2053 2090 8.691661 AGGTGACTCAATTTTGTACTAACATT 57.308 30.769 0.00 0.00 32.90 2.71
2054 2091 9.959721 ATAGGTGACTCAATTTTGTACTAACAT 57.040 29.630 0.00 0.00 43.67 2.71
2055 2092 9.787435 AATAGGTGACTCAATTTTGTACTAACA 57.213 29.630 0.00 0.00 43.67 2.41
2059 2096 8.576442 CCAAAATAGGTGACTCAATTTTGTACT 58.424 33.333 18.01 0.00 43.67 2.73
2060 2097 7.812669 CCCAAAATAGGTGACTCAATTTTGTAC 59.187 37.037 18.01 0.00 43.67 2.90
2061 2098 7.726291 TCCCAAAATAGGTGACTCAATTTTGTA 59.274 33.333 18.01 9.22 43.67 2.41
2062 2099 6.553100 TCCCAAAATAGGTGACTCAATTTTGT 59.447 34.615 18.01 0.00 43.67 2.83
2063 2100 6.868339 GTCCCAAAATAGGTGACTCAATTTTG 59.132 38.462 15.00 15.00 43.67 2.44
2064 2101 6.294508 CGTCCCAAAATAGGTGACTCAATTTT 60.295 38.462 0.00 0.00 43.67 1.82
2065 2102 5.183140 CGTCCCAAAATAGGTGACTCAATTT 59.817 40.000 0.00 0.00 43.67 1.82
2066 2103 4.700213 CGTCCCAAAATAGGTGACTCAATT 59.300 41.667 0.00 0.00 43.67 2.32
2067 2104 4.261801 CGTCCCAAAATAGGTGACTCAAT 58.738 43.478 0.00 0.00 43.67 2.57
2068 2105 3.558321 CCGTCCCAAAATAGGTGACTCAA 60.558 47.826 0.00 0.00 43.67 3.02
2069 2106 2.027561 CCGTCCCAAAATAGGTGACTCA 60.028 50.000 0.00 0.00 43.67 3.41
2070 2107 2.235402 TCCGTCCCAAAATAGGTGACTC 59.765 50.000 0.00 0.00 43.67 3.36
2072 2109 2.629051 CTCCGTCCCAAAATAGGTGAC 58.371 52.381 0.00 0.00 0.00 3.67
2073 2110 1.557832 CCTCCGTCCCAAAATAGGTGA 59.442 52.381 0.00 0.00 0.00 4.02
2074 2111 1.408266 CCCTCCGTCCCAAAATAGGTG 60.408 57.143 0.00 0.00 0.00 4.00
2075 2112 0.916809 CCCTCCGTCCCAAAATAGGT 59.083 55.000 0.00 0.00 0.00 3.08
2076 2113 1.141053 CTCCCTCCGTCCCAAAATAGG 59.859 57.143 0.00 0.00 0.00 2.57
2077 2114 1.838077 ACTCCCTCCGTCCCAAAATAG 59.162 52.381 0.00 0.00 0.00 1.73
2078 2115 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2079 2116 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2080 2117 1.732117 TTACTCCCTCCGTCCCAAAA 58.268 50.000 0.00 0.00 0.00 2.44
2081 2118 1.961133 ATTACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
2082 2119 2.852714 TATTACTCCCTCCGTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
2083 2120 3.400322 AGTATATTACTCCCTCCGTCCCA 59.600 47.826 0.00 0.00 32.47 4.37
2084 2121 4.044946 AGTATATTACTCCCTCCGTCCC 57.955 50.000 0.00 0.00 32.47 4.46
2085 2122 6.150809 CAGTAAGTATATTACTCCCTCCGTCC 59.849 46.154 0.00 0.00 38.26 4.79
2086 2123 6.939163 TCAGTAAGTATATTACTCCCTCCGTC 59.061 42.308 0.00 0.00 38.26 4.79
2087 2124 6.845908 TCAGTAAGTATATTACTCCCTCCGT 58.154 40.000 0.00 0.00 38.26 4.69
2088 2125 7.756395 TTCAGTAAGTATATTACTCCCTCCG 57.244 40.000 0.00 0.00 38.26 4.63
2106 2143 9.938280 AGCTAGTGTGTTATACAATTTTCAGTA 57.062 29.630 0.00 0.00 41.89 2.74
2122 2159 1.906990 ACGGTACTCAGCTAGTGTGT 58.093 50.000 6.21 0.00 39.39 3.72
2211 2248 2.166254 GGCAAGTTGAGAGAGAGAGAGG 59.834 54.545 7.16 0.00 0.00 3.69
2339 2387 0.034756 TGACGTGACATGGAACTGGG 59.965 55.000 0.00 0.00 0.00 4.45
2384 2442 2.232941 GACTGAAACCGTGACAGGGATA 59.767 50.000 20.77 3.31 36.17 2.59
2388 2446 1.202533 AGTGACTGAAACCGTGACAGG 60.203 52.381 0.00 0.00 36.17 4.00
2422 2480 9.890629 TGATATCCATATTATAACAAGGCACTC 57.109 33.333 0.00 0.00 38.49 3.51
2507 2608 1.701847 AGGTTGGATGAAGCACTCTGT 59.298 47.619 0.00 0.00 34.24 3.41
2509 2610 3.617531 CGTAAGGTTGGATGAAGCACTCT 60.618 47.826 0.00 0.00 34.24 3.24
2535 2636 0.251653 GGGAAAAGGGAGTGGGGAAC 60.252 60.000 0.00 0.00 0.00 3.62
2558 2659 3.329225 CCAGAGATAGGAGGGGGAAAATC 59.671 52.174 0.00 0.00 0.00 2.17
2559 2660 3.312459 ACCAGAGATAGGAGGGGGAAAAT 60.312 47.826 0.00 0.00 0.00 1.82
2560 2661 2.047296 ACCAGAGATAGGAGGGGGAAAA 59.953 50.000 0.00 0.00 0.00 2.29
2564 2665 2.198334 AAACCAGAGATAGGAGGGGG 57.802 55.000 0.00 0.00 0.00 5.40
2696 2797 9.653287 TCTGCCCGTGATTTATTATCTAAATAG 57.347 33.333 0.00 0.00 0.00 1.73
2707 2808 7.581213 TCATAAAATTCTGCCCGTGATTTAT 57.419 32.000 0.00 0.00 0.00 1.40
2763 2865 6.911308 AGTACATTAGCCCATGATTTACCTT 58.089 36.000 0.00 0.00 0.00 3.50
2783 2885 9.991906 TGCAACAGGGTATAAATATTCTAGTAC 57.008 33.333 0.00 0.00 0.00 2.73
2803 2905 1.670949 ATTGCCCGTGTGTTGCAACA 61.671 50.000 27.96 27.96 46.60 3.33
2812 2914 6.932960 GGTTATTACTAGATAATTGCCCGTGT 59.067 38.462 0.00 0.00 35.08 4.49
2862 2964 3.044156 TGAGCAGAGAGGGCAGATAAAT 58.956 45.455 0.00 0.00 0.00 1.40
2866 2968 1.336632 GGTGAGCAGAGAGGGCAGAT 61.337 60.000 0.00 0.00 0.00 2.90
2891 2993 1.227853 ACAACGGTGGAGGCAGTTC 60.228 57.895 4.97 0.00 0.00 3.01
2905 3007 3.501828 TGATTATCACAGTGGTGCACAAC 59.498 43.478 17.10 17.10 44.87 3.32
2969 3071 6.817184 TGCCCTCTTATACACTGAAATCTAC 58.183 40.000 0.00 0.00 0.00 2.59
3030 3132 3.392947 TCCCTGGTGAACTGTGATTACAA 59.607 43.478 0.00 0.00 36.14 2.41
3136 3238 8.467963 TTCCGAGTATACAATATACACTGGAA 57.532 34.615 5.50 15.39 32.23 3.53
3231 3333 9.567848 AAATACCGTTTCAAACTAGCATAAATG 57.432 29.630 0.00 0.00 0.00 2.32
3256 3358 4.526262 CCACCCACACATCCAAAATAGAAA 59.474 41.667 0.00 0.00 0.00 2.52
3305 3407 0.471591 AATGGGCCACCTTCTTGCAA 60.472 50.000 9.28 0.00 37.76 4.08
3373 3475 4.286808 TCATCCTCTTCAACTGATCCAACA 59.713 41.667 0.00 0.00 0.00 3.33
3383 3485 4.067896 TGCTGAAGTTCATCCTCTTCAAC 58.932 43.478 5.91 5.53 45.75 3.18
3417 3519 7.035004 TGCAATTAACCAAGCTTTATCATGTC 58.965 34.615 0.00 0.00 0.00 3.06
3522 3624 4.562394 GCAAGCGTTGTTATGTGCAATTAT 59.438 37.500 0.00 0.00 32.29 1.28
3600 3702 3.242123 GCTCTGCTTGCTCGTGTATTAAC 60.242 47.826 0.00 0.00 0.00 2.01
3775 5590 1.600636 CTTGTCGCAGGGCCTGAAA 60.601 57.895 37.07 20.34 32.44 2.69
3802 5617 3.771216 ACAGGAAATGAAGGAGCAACAT 58.229 40.909 0.00 0.00 0.00 2.71
3803 5618 3.228188 ACAGGAAATGAAGGAGCAACA 57.772 42.857 0.00 0.00 0.00 3.33
3804 5619 5.473504 TCTTAACAGGAAATGAAGGAGCAAC 59.526 40.000 0.00 0.00 0.00 4.17
3805 5620 5.630121 TCTTAACAGGAAATGAAGGAGCAA 58.370 37.500 0.00 0.00 0.00 3.91
3889 5704 9.248291 CTTTTGTAAGTATTTGAGTGTTTGCAT 57.752 29.630 0.00 0.00 0.00 3.96
3894 5709 9.185680 ACCTTCTTTTGTAAGTATTTGAGTGTT 57.814 29.630 0.00 0.00 32.98 3.32
3998 5813 6.741992 TTGTGTATTAGCTTCAGGAATGTG 57.258 37.500 0.00 0.00 0.00 3.21
4004 5819 7.094634 ACTGACAAATTGTGTATTAGCTTCAGG 60.095 37.037 2.20 0.00 41.96 3.86
4239 6057 6.868339 CCAGTTATCATCACATATTCGTAGCA 59.132 38.462 0.00 0.00 0.00 3.49
4323 6141 8.834465 GTCTCGGTAATAGTATGTCTAAGTTGA 58.166 37.037 0.00 0.00 31.94 3.18
4368 6187 6.800543 TGTAGCTGAGCAAAACATTTTGTTA 58.199 32.000 16.33 5.00 46.92 2.41
4403 6222 7.012044 AGTGTTACACTGGTTTTCATGAACTAC 59.988 37.037 17.92 9.30 43.63 2.73
4420 6239 7.426929 AATCAGAACATCTCAAGTGTTACAC 57.573 36.000 7.50 7.50 39.72 2.90
4441 6260 8.539770 TCATCACTGAGTTCAAACTTCTAATC 57.460 34.615 0.00 0.00 39.88 1.75
4445 6264 7.814264 ATTTCATCACTGAGTTCAAACTTCT 57.186 32.000 0.00 0.00 39.88 2.85
4517 6360 1.300853 CCGGTTACGTCGGGTGTTT 60.301 57.895 6.28 0.00 43.45 2.83
4525 6368 0.598158 TCACAAGCACCGGTTACGTC 60.598 55.000 2.97 0.00 38.78 4.34
4588 6431 6.365520 ACCAGGTCAAAGAAGTGAAAGTAAT 58.634 36.000 0.00 0.00 0.00 1.89
4757 6787 2.026822 AGTCCCTCAAACAATCATCGCT 60.027 45.455 0.00 0.00 0.00 4.93
4781 6811 6.035843 TGTTTCTCAAGCAACTGATTTGAAC 58.964 36.000 0.00 0.00 37.39 3.18
4782 6812 6.206395 TGTTTCTCAAGCAACTGATTTGAA 57.794 33.333 0.00 0.00 37.39 2.69
4994 7027 8.749841 AACTTCAGTATCATCGAGCATATTAC 57.250 34.615 0.00 0.00 0.00 1.89
5098 7131 1.271108 TGTTGCAAGCTTCATACGGGA 60.271 47.619 0.00 0.00 0.00 5.14
5122 7155 2.187351 TGCGTGTTGCTGAAAACTTC 57.813 45.000 0.00 0.00 46.63 3.01
5139 7172 2.546368 TCACATCGTTACACCTGTTTGC 59.454 45.455 0.00 0.00 0.00 3.68
5189 7222 7.704472 GGATATTGAAGCATATAGAGAACCTCG 59.296 40.741 0.00 0.00 35.36 4.63
5276 7309 5.430089 AGATATGGTTACTCTGGAGGCTTTT 59.570 40.000 2.58 0.00 0.00 2.27
5314 7347 6.979817 TGAACTGCAATATTTGGCATGATTAC 59.020 34.615 0.00 0.00 39.65 1.89
5339 7372 1.246056 ATTGCAAGGTCGCAGCACAT 61.246 50.000 4.94 0.00 44.14 3.21
5378 7411 5.070770 TCAGAGAAGAAGATTGACTGCTC 57.929 43.478 0.00 0.00 38.65 4.26
5408 7441 4.156455 AGTGGAATGTTGAGTTGTCACT 57.844 40.909 0.00 0.00 35.17 3.41
5409 7442 4.900635 AAGTGGAATGTTGAGTTGTCAC 57.099 40.909 0.00 0.00 30.10 3.67
5438 7471 4.400961 GCCGGGACTTGAGCAGCT 62.401 66.667 2.18 0.00 0.00 4.24
5598 7631 4.335594 AGAGGCGCCACTAAAAATATTGTC 59.664 41.667 31.54 11.99 0.00 3.18
5616 7649 1.220477 GACCTGGCAGAGAAGAGGC 59.780 63.158 17.94 0.00 0.00 4.70
5628 7661 2.124403 GCTCTGGCATGGACCTGG 60.124 66.667 0.00 0.00 38.54 4.45
5704 7737 3.152341 GCAATAATGGACCCTGGAGATG 58.848 50.000 0.00 0.00 0.00 2.90
5712 7745 7.522236 GCTCTTATTTGTAGCAATAATGGACCC 60.522 40.741 0.00 0.00 36.26 4.46
5864 7897 3.367292 CCAAAACATCATCTTCAACGGGG 60.367 47.826 0.00 0.00 0.00 5.73
6009 8042 1.679153 GCGGGACTCCAAAACTTTCAA 59.321 47.619 0.00 0.00 0.00 2.69
6069 8102 2.555757 CCTCACTTCCTTTTTCCTGCTG 59.444 50.000 0.00 0.00 0.00 4.41
6094 8127 5.791336 AACAGCATCTTCGACTGGATATA 57.209 39.130 5.15 0.00 35.70 0.86
6157 8190 1.349026 TGCTTTCCAGACCCAGAGAAG 59.651 52.381 0.00 0.00 0.00 2.85
6158 8191 1.434188 TGCTTTCCAGACCCAGAGAA 58.566 50.000 0.00 0.00 0.00 2.87
6182 8218 1.068055 GTGCTTGCATTTAGCTGCTGT 60.068 47.619 13.43 0.00 45.94 4.40
6239 8276 3.306294 GGGACTTCAAAATTTCCAGCCTG 60.306 47.826 0.00 0.00 0.00 4.85
6250 8287 4.081406 CACATCTGGATGGGACTTCAAAA 58.919 43.478 14.06 0.00 44.83 2.44
6311 8476 4.290622 AGCCCCACAGCACAAGGG 62.291 66.667 0.00 0.00 42.94 3.95
6344 8509 1.656652 CAGGCGATGGAAGTAACTGG 58.343 55.000 0.00 0.00 0.00 4.00
6464 8629 6.204882 GTGCATCTTTAAGTCTACACAAAGGT 59.795 38.462 0.00 0.00 0.00 3.50
6577 8742 0.102844 TGCAGTCTTTTGTGCCAAGC 59.897 50.000 0.00 0.00 39.04 4.01
6681 8846 1.985159 CAATATAGCCTGTGCCCCCTA 59.015 52.381 0.00 0.00 38.69 3.53
6892 9272 0.102300 GTTGCACCACAAACAGGGAC 59.898 55.000 0.00 0.00 40.82 4.46
6933 9314 1.729586 ACTCACCAAGGAGGCTTACA 58.270 50.000 0.00 0.00 43.14 2.41
6964 9345 2.478134 CAGCAAGAGACAACACTACAGC 59.522 50.000 0.00 0.00 0.00 4.40
6965 9346 3.062763 CCAGCAAGAGACAACACTACAG 58.937 50.000 0.00 0.00 0.00 2.74
7022 9403 3.417690 TGGTTTTTCGGGTTTACAACG 57.582 42.857 0.00 0.00 0.00 4.10
7068 9450 1.679680 CCTGCCCTGCAAACATGATAG 59.320 52.381 0.00 0.00 38.41 2.08
7083 9465 1.527433 GGTTTGCTTCAGACCCTGCC 61.527 60.000 0.00 0.00 33.21 4.85
7093 9475 0.678048 AGCGATCAGGGGTTTGCTTC 60.678 55.000 0.00 0.00 30.80 3.86
7100 9482 1.118356 GGAGATCAGCGATCAGGGGT 61.118 60.000 16.97 0.87 41.12 4.95
7114 9496 1.827969 CCGGTGAACTGAAGAGGAGAT 59.172 52.381 0.00 0.00 0.00 2.75
7144 9526 0.652592 CTAACGCTGGCAGAAATCCG 59.347 55.000 20.86 14.23 0.00 4.18
7155 9537 0.671781 ACCTTGAGCTGCTAACGCTG 60.672 55.000 0.15 0.00 37.96 5.18
7208 9594 4.729868 AGCTTAAACAGTTCCAGATTGGT 58.270 39.130 0.00 0.00 39.03 3.67
7209 9595 4.142816 CGAGCTTAAACAGTTCCAGATTGG 60.143 45.833 0.00 0.00 39.43 3.16
7246 9643 4.606961 TCAAAAATCTGCCTCAACGTTTC 58.393 39.130 0.00 0.00 0.00 2.78
7260 9657 9.695526 TGCCAATGTAATAGCATATCAAAAATC 57.304 29.630 0.00 0.00 31.61 2.17
7262 9659 8.143193 CCTGCCAATGTAATAGCATATCAAAAA 58.857 33.333 0.00 0.00 35.50 1.94
7263 9660 7.505248 TCCTGCCAATGTAATAGCATATCAAAA 59.495 33.333 0.00 0.00 35.50 2.44
7264 9661 7.003482 TCCTGCCAATGTAATAGCATATCAAA 58.997 34.615 0.00 0.00 35.50 2.69
7286 9683 2.119495 CAGTAGGTATGGCAGGTTCCT 58.881 52.381 0.00 0.51 0.00 3.36
7307 9707 3.059597 ACAGAGAAACGAAAATGACTGCG 60.060 43.478 0.00 0.00 0.00 5.18
7308 9708 4.474226 ACAGAGAAACGAAAATGACTGC 57.526 40.909 0.00 0.00 0.00 4.40
7339 9739 2.004583 TACGCACTACAGCACAATCC 57.995 50.000 0.00 0.00 0.00 3.01
7346 9746 1.068472 AGCCGATATACGCACTACAGC 60.068 52.381 0.00 0.00 41.07 4.40
7394 9809 5.812642 CAGGTTCGTTTAATCTATCAGTGCT 59.187 40.000 0.00 0.00 0.00 4.40
7430 9845 5.329399 ACCTCTCACTCTCAGAACTAACAT 58.671 41.667 0.00 0.00 0.00 2.71
7450 9865 2.228582 TGCGTTGTGTACATACGTACCT 59.771 45.455 24.78 0.00 46.33 3.08
7492 9907 1.840630 TTGACGTGCATGCCGAAGTG 61.841 55.000 27.68 10.09 0.00 3.16
7496 9911 2.741985 CCTTGACGTGCATGCCGA 60.742 61.111 27.68 4.62 0.00 5.54
7624 10042 0.759346 CTACCCTGACCCCTGTATGC 59.241 60.000 0.00 0.00 0.00 3.14
7626 10044 0.400093 GCCTACCCTGACCCCTGTAT 60.400 60.000 0.00 0.00 0.00 2.29
7736 10159 0.944386 GACTGCAACATTGACCGTGT 59.056 50.000 0.00 0.00 0.00 4.49
7738 10161 1.841663 GCGACTGCAACATTGACCGT 61.842 55.000 0.00 0.00 42.15 4.83
7833 10256 0.107703 CACCCATGCACCGTGTCTAT 60.108 55.000 0.00 0.00 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.