Multiple sequence alignment - TraesCS1A01G197900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G197900 chr1A 100.000 2507 0 0 1 2507 355717355 355719861 0.000000e+00 4630.0
1 TraesCS1A01G197900 chr1A 84.848 99 12 3 2412 2507 432012190 432012288 2.050000e-16 97.1
2 TraesCS1A01G197900 chr1D 91.475 1607 79 33 913 2474 284242767 284244360 0.000000e+00 2156.0
3 TraesCS1A01G197900 chr1D 93.769 642 39 1 21 661 446756632 446755991 0.000000e+00 963.0
4 TraesCS1A01G197900 chr1D 93.887 638 38 1 21 657 355672364 355673001 0.000000e+00 961.0
5 TraesCS1A01G197900 chr1D 93.458 642 38 4 21 661 11803842 11804480 0.000000e+00 950.0
6 TraesCS1A01G197900 chr1D 93.438 640 39 3 21 659 491722111 491721474 0.000000e+00 946.0
7 TraesCS1A01G197900 chr1D 77.632 152 23 10 2163 2310 254781734 254781878 5.750000e-12 82.4
8 TraesCS1A01G197900 chr1B 92.235 850 30 16 935 1753 386162368 386163212 0.000000e+00 1171.0
9 TraesCS1A01G197900 chr1B 88.889 171 6 3 720 883 386162207 386162371 5.470000e-47 198.0
10 TraesCS1A01G197900 chr1B 86.869 99 10 3 2412 2507 636127196 636127098 9.480000e-20 108.0
11 TraesCS1A01G197900 chr3D 93.769 642 36 2 21 661 581096274 581095636 0.000000e+00 961.0
12 TraesCS1A01G197900 chrUn 93.740 639 39 1 21 658 51420114 51420752 0.000000e+00 957.0
13 TraesCS1A01G197900 chrUn 93.574 638 39 2 21 657 62534835 62534199 0.000000e+00 950.0
14 TraesCS1A01G197900 chrUn 93.417 638 41 1 21 657 62462824 62462187 0.000000e+00 944.0
15 TraesCS1A01G197900 chr6B 93.740 639 35 4 21 658 663015469 663016103 0.000000e+00 953.0
16 TraesCS1A01G197900 chr6B 84.259 108 14 3 2190 2295 214057868 214057762 4.410000e-18 102.0
17 TraesCS1A01G197900 chr6D 83.824 136 17 5 2163 2296 122375946 122375814 9.420000e-25 124.0
18 TraesCS1A01G197900 chr6A 86.869 99 10 3 2412 2507 498533255 498533353 9.480000e-20 108.0
19 TraesCS1A01G197900 chr6A 84.762 105 13 3 2190 2292 149919877 149919980 4.410000e-18 102.0
20 TraesCS1A01G197900 chr3B 86.869 99 10 3 2412 2507 820050651 820050553 9.480000e-20 108.0
21 TraesCS1A01G197900 chr7A 85.859 99 11 3 2412 2507 20594063 20593965 4.410000e-18 102.0
22 TraesCS1A01G197900 chr7A 85.859 99 10 4 2412 2507 620167601 620167504 4.410000e-18 102.0
23 TraesCS1A01G197900 chr7A 84.848 99 12 3 2412 2507 52078736 52078638 2.050000e-16 97.1
24 TraesCS1A01G197900 chr3A 85.859 99 11 3 2412 2507 681107206 681107304 4.410000e-18 102.0
25 TraesCS1A01G197900 chr5B 81.061 132 18 7 2185 2313 655583754 655583881 5.710000e-17 99.0
26 TraesCS1A01G197900 chr5B 76.974 152 25 10 2163 2310 634033659 634033514 7.430000e-11 78.7
27 TraesCS1A01G197900 chr7D 81.301 123 18 5 2163 2283 231000238 231000119 7.380000e-16 95.3
28 TraesCS1A01G197900 chr2D 82.243 107 13 6 2163 2266 630698554 630698657 1.240000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G197900 chr1A 355717355 355719861 2506 False 4630.0 4630 100.000 1 2507 1 chr1A.!!$F1 2506
1 TraesCS1A01G197900 chr1D 284242767 284244360 1593 False 2156.0 2156 91.475 913 2474 1 chr1D.!!$F3 1561
2 TraesCS1A01G197900 chr1D 446755991 446756632 641 True 963.0 963 93.769 21 661 1 chr1D.!!$R1 640
3 TraesCS1A01G197900 chr1D 355672364 355673001 637 False 961.0 961 93.887 21 657 1 chr1D.!!$F4 636
4 TraesCS1A01G197900 chr1D 11803842 11804480 638 False 950.0 950 93.458 21 661 1 chr1D.!!$F1 640
5 TraesCS1A01G197900 chr1D 491721474 491722111 637 True 946.0 946 93.438 21 659 1 chr1D.!!$R2 638
6 TraesCS1A01G197900 chr1B 386162207 386163212 1005 False 684.5 1171 90.562 720 1753 2 chr1B.!!$F1 1033
7 TraesCS1A01G197900 chr3D 581095636 581096274 638 True 961.0 961 93.769 21 661 1 chr3D.!!$R1 640
8 TraesCS1A01G197900 chrUn 51420114 51420752 638 False 957.0 957 93.740 21 658 1 chrUn.!!$F1 637
9 TraesCS1A01G197900 chrUn 62534199 62534835 636 True 950.0 950 93.574 21 657 1 chrUn.!!$R2 636
10 TraesCS1A01G197900 chrUn 62462187 62462824 637 True 944.0 944 93.417 21 657 1 chrUn.!!$R1 636
11 TraesCS1A01G197900 chr6B 663015469 663016103 634 False 953.0 953 93.740 21 658 1 chr6B.!!$F1 637

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
792 803 0.040058 TGTCACCCTCCTACGGCTAA 59.96 55.0 0.0 0.0 0.0 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2485 2553 0.040425 CTTGAAGACGCCGTTTTGGG 60.04 55.0 0.0 0.0 38.63 4.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 102 1.529948 CGTCTCCGGTGGCCCTATA 60.530 63.158 0.00 0.00 0.00 1.31
207 209 1.821936 CTGCTCAGGAAGGCGAGAT 59.178 57.895 0.00 0.00 0.00 2.75
241 243 5.492524 TCCCTGAAGATGGAATAAAGGTCTT 59.507 40.000 0.00 0.00 32.23 3.01
268 271 4.402528 CCCCGTTCCGGTGATGCA 62.403 66.667 0.00 0.00 46.80 3.96
322 325 1.079127 CCGGCGGATCTGTCTTTGT 60.079 57.895 24.41 0.00 0.00 2.83
325 328 1.808411 GGCGGATCTGTCTTTGTTGA 58.192 50.000 2.89 0.00 0.00 3.18
353 356 1.694639 GGATCTGTTCGTCGTTCGTT 58.305 50.000 0.00 0.00 40.80 3.85
373 376 4.396519 GTTTTCGTTCGTGTGTTTTCAGA 58.603 39.130 0.00 0.00 0.00 3.27
472 475 2.852748 CGACTTTCCGACTGTCTACTG 58.147 52.381 6.21 0.00 0.00 2.74
480 483 2.288213 CCGACTGTCTACTGCAACAAGA 60.288 50.000 6.21 0.00 0.00 3.02
616 620 7.686438 TTCTAGTGTTCGTTGTACTACCATA 57.314 36.000 1.76 0.00 0.00 2.74
683 687 7.670364 AGACAATGTAAAATTCCTTTGAAGGG 58.330 34.615 9.78 0.00 46.47 3.95
684 688 7.290014 AGACAATGTAAAATTCCTTTGAAGGGT 59.710 33.333 9.78 0.00 46.47 4.34
685 689 8.485578 ACAATGTAAAATTCCTTTGAAGGGTA 57.514 30.769 9.78 0.00 46.47 3.69
686 690 8.929487 ACAATGTAAAATTCCTTTGAAGGGTAA 58.071 29.630 9.78 0.00 46.47 2.85
687 691 9.203421 CAATGTAAAATTCCTTTGAAGGGTAAC 57.797 33.333 9.78 2.11 46.47 2.50
688 692 8.721133 ATGTAAAATTCCTTTGAAGGGTAACT 57.279 30.769 9.78 0.00 46.47 2.24
689 693 9.816787 ATGTAAAATTCCTTTGAAGGGTAACTA 57.183 29.630 9.78 0.00 46.47 2.24
690 694 9.643735 TGTAAAATTCCTTTGAAGGGTAACTAA 57.356 29.630 9.78 0.00 46.47 2.24
693 697 9.429109 AAAATTCCTTTGAAGGGTAACTAAGAA 57.571 29.630 9.78 0.00 46.47 2.52
694 698 8.637196 AATTCCTTTGAAGGGTAACTAAGAAG 57.363 34.615 9.78 0.00 46.47 2.85
695 699 6.123045 TCCTTTGAAGGGTAACTAAGAAGG 57.877 41.667 9.78 0.00 46.47 3.46
696 700 5.847817 TCCTTTGAAGGGTAACTAAGAAGGA 59.152 40.000 9.78 0.00 46.47 3.36
697 701 6.330778 TCCTTTGAAGGGTAACTAAGAAGGAA 59.669 38.462 9.78 0.00 46.47 3.36
698 702 6.430308 CCTTTGAAGGGTAACTAAGAAGGAAC 59.570 42.308 1.68 0.00 42.66 3.62
699 703 7.692040 CCTTTGAAGGGTAACTAAGAAGGAACT 60.692 40.741 1.68 0.00 42.66 3.01
700 704 6.356186 TGAAGGGTAACTAAGAAGGAACTC 57.644 41.667 0.00 0.00 38.49 3.01
701 705 5.247792 TGAAGGGTAACTAAGAAGGAACTCC 59.752 44.000 0.00 0.00 38.49 3.85
702 706 4.102598 AGGGTAACTAAGAAGGAACTCCC 58.897 47.826 0.00 0.00 38.49 4.30
703 707 3.842436 GGGTAACTAAGAAGGAACTCCCA 59.158 47.826 0.00 0.00 38.49 4.37
704 708 4.081031 GGGTAACTAAGAAGGAACTCCCAG 60.081 50.000 0.00 0.00 38.49 4.45
705 709 4.776308 GGTAACTAAGAAGGAACTCCCAGA 59.224 45.833 0.00 0.00 38.49 3.86
706 710 5.425862 GGTAACTAAGAAGGAACTCCCAGAT 59.574 44.000 0.00 0.00 38.49 2.90
707 711 5.685520 AACTAAGAAGGAACTCCCAGATC 57.314 43.478 0.00 0.00 38.49 2.75
708 712 3.702045 ACTAAGAAGGAACTCCCAGATCG 59.298 47.826 0.00 0.00 38.49 3.69
709 713 0.827368 AGAAGGAACTCCCAGATCGC 59.173 55.000 0.00 0.00 38.49 4.58
710 714 0.537188 GAAGGAACTCCCAGATCGCA 59.463 55.000 0.00 0.00 38.49 5.10
711 715 0.539051 AAGGAACTCCCAGATCGCAG 59.461 55.000 0.00 0.00 38.49 5.18
712 716 1.522580 GGAACTCCCAGATCGCAGC 60.523 63.158 0.00 0.00 34.14 5.25
713 717 1.522580 GAACTCCCAGATCGCAGCC 60.523 63.158 0.00 0.00 0.00 4.85
714 718 3.376935 AACTCCCAGATCGCAGCCG 62.377 63.158 0.00 0.00 0.00 5.52
715 719 3.842923 CTCCCAGATCGCAGCCGT 61.843 66.667 0.00 0.00 35.54 5.68
716 720 3.376935 CTCCCAGATCGCAGCCGTT 62.377 63.158 0.00 0.00 35.54 4.44
717 721 3.197790 CCCAGATCGCAGCCGTTG 61.198 66.667 0.00 0.00 35.54 4.10
787 798 3.262420 CAGAAATTGTCACCCTCCTACG 58.738 50.000 0.00 0.00 0.00 3.51
792 803 0.040058 TGTCACCCTCCTACGGCTAA 59.960 55.000 0.00 0.00 0.00 3.09
812 823 0.801872 TTGTTCGTGATTGCCATCCG 59.198 50.000 0.00 0.00 0.00 4.18
815 826 2.514592 CGTGATTGCCATCCGCCT 60.515 61.111 0.00 0.00 36.24 5.52
854 865 1.055551 ACTCCGTGTTACACCCCCAA 61.056 55.000 10.10 0.00 0.00 4.12
855 866 0.604511 CTCCGTGTTACACCCCCAAC 60.605 60.000 10.10 0.00 0.00 3.77
856 867 1.601477 CCGTGTTACACCCCCAACC 60.601 63.158 10.10 0.00 0.00 3.77
857 868 1.601477 CGTGTTACACCCCCAACCC 60.601 63.158 10.10 0.00 0.00 4.11
858 869 1.228644 GTGTTACACCCCCAACCCC 60.229 63.158 3.79 0.00 0.00 4.95
859 870 1.700294 TGTTACACCCCCAACCCCA 60.700 57.895 0.00 0.00 0.00 4.96
860 871 1.294426 TGTTACACCCCCAACCCCAA 61.294 55.000 0.00 0.00 0.00 4.12
873 884 3.194755 CCAACCCCAAGGCACTAAATAAC 59.805 47.826 0.00 0.00 38.49 1.89
879 890 6.379988 ACCCCAAGGCACTAAATAACTAATTG 59.620 38.462 0.00 0.00 38.49 2.32
880 891 6.183360 CCCCAAGGCACTAAATAACTAATTGG 60.183 42.308 0.00 0.00 38.49 3.16
881 892 6.605594 CCCAAGGCACTAAATAACTAATTGGA 59.394 38.462 0.00 0.00 38.49 3.53
882 893 7.201821 CCCAAGGCACTAAATAACTAATTGGAG 60.202 40.741 0.00 0.00 38.49 3.86
883 894 7.556275 CCAAGGCACTAAATAACTAATTGGAGA 59.444 37.037 0.00 0.00 38.49 3.71
884 895 8.398665 CAAGGCACTAAATAACTAATTGGAGAC 58.601 37.037 0.00 0.00 38.49 3.36
885 896 7.862675 AGGCACTAAATAACTAATTGGAGACT 58.137 34.615 0.00 0.00 36.02 3.24
886 897 7.770897 AGGCACTAAATAACTAATTGGAGACTG 59.229 37.037 0.00 0.00 36.02 3.51
887 898 7.012421 GGCACTAAATAACTAATTGGAGACTGG 59.988 40.741 0.00 0.00 0.00 4.00
888 899 7.553044 GCACTAAATAACTAATTGGAGACTGGT 59.447 37.037 0.00 0.00 0.00 4.00
894 905 9.668497 AATAACTAATTGGAGACTGGTAAAGAC 57.332 33.333 0.00 0.00 0.00 3.01
895 906 5.721232 ACTAATTGGAGACTGGTAAAGACG 58.279 41.667 0.00 0.00 0.00 4.18
896 907 4.618920 AATTGGAGACTGGTAAAGACGT 57.381 40.909 0.00 0.00 0.00 4.34
897 908 5.733620 AATTGGAGACTGGTAAAGACGTA 57.266 39.130 0.00 0.00 0.00 3.57
898 909 5.733620 ATTGGAGACTGGTAAAGACGTAA 57.266 39.130 0.00 0.00 0.00 3.18
899 910 5.534207 TTGGAGACTGGTAAAGACGTAAA 57.466 39.130 0.00 0.00 0.00 2.01
900 911 5.733620 TGGAGACTGGTAAAGACGTAAAT 57.266 39.130 0.00 0.00 0.00 1.40
901 912 6.839124 TGGAGACTGGTAAAGACGTAAATA 57.161 37.500 0.00 0.00 0.00 1.40
902 913 7.414222 TGGAGACTGGTAAAGACGTAAATAT 57.586 36.000 0.00 0.00 0.00 1.28
903 914 8.523915 TGGAGACTGGTAAAGACGTAAATATA 57.476 34.615 0.00 0.00 0.00 0.86
904 915 9.139734 TGGAGACTGGTAAAGACGTAAATATAT 57.860 33.333 0.00 0.00 0.00 0.86
905 916 9.408069 GGAGACTGGTAAAGACGTAAATATATG 57.592 37.037 0.00 0.00 0.00 1.78
906 917 8.813643 AGACTGGTAAAGACGTAAATATATGC 57.186 34.615 0.00 0.00 0.00 3.14
907 918 7.871463 AGACTGGTAAAGACGTAAATATATGCC 59.129 37.037 0.00 0.00 0.00 4.40
908 919 6.932960 ACTGGTAAAGACGTAAATATATGCCC 59.067 38.462 0.00 0.00 0.00 5.36
909 920 6.232692 TGGTAAAGACGTAAATATATGCCCC 58.767 40.000 0.00 0.00 0.00 5.80
910 921 5.349543 GGTAAAGACGTAAATATATGCCCCG 59.650 44.000 0.00 0.00 0.00 5.73
911 922 4.612264 AAGACGTAAATATATGCCCCGT 57.388 40.909 0.00 0.00 0.00 5.28
924 935 4.647615 CCCGTCCATAGCCGAGCG 62.648 72.222 0.00 0.00 0.00 5.03
925 936 3.592814 CCGTCCATAGCCGAGCGA 61.593 66.667 0.00 0.00 0.00 4.93
926 937 2.050895 CGTCCATAGCCGAGCGAG 60.051 66.667 0.00 0.00 0.00 5.03
930 941 2.647875 CATAGCCGAGCGAGGAGG 59.352 66.667 4.64 0.00 0.00 4.30
952 963 4.304659 GGAGGGAGGATAAGGTAAAGGAA 58.695 47.826 0.00 0.00 0.00 3.36
961 972 2.206576 AGGTAAAGGAAGCAGGCAAG 57.793 50.000 0.00 0.00 0.00 4.01
1040 1055 3.877450 GGGATGCCATCTCGCCCA 61.877 66.667 4.41 0.00 38.68 5.36
1078 1093 3.770040 CGGTCAGCATCCCCGTGA 61.770 66.667 0.00 0.00 37.00 4.35
1108 1123 1.760086 GCTAGCAGCAGGAGGAGGA 60.760 63.158 10.63 0.00 41.89 3.71
1512 1527 2.844146 GACGACAACTGAACCGCG 59.156 61.111 0.00 0.00 0.00 6.46
1513 1528 2.654912 GACGACAACTGAACCGCGG 61.655 63.158 26.86 26.86 0.00 6.46
1515 1530 4.072088 GACAACTGAACCGCGGCG 62.072 66.667 28.58 16.78 0.00 6.46
1537 1577 1.413808 CCCCTCCTAGCTAGCTCCTTT 60.414 57.143 23.26 0.00 0.00 3.11
1538 1578 2.158295 CCCCTCCTAGCTAGCTCCTTTA 60.158 54.545 23.26 1.52 0.00 1.85
1539 1579 3.161866 CCCTCCTAGCTAGCTCCTTTAG 58.838 54.545 23.26 12.63 0.00 1.85
1540 1580 3.437344 CCCTCCTAGCTAGCTCCTTTAGT 60.437 52.174 23.26 0.00 0.00 2.24
1542 1582 3.824443 CTCCTAGCTAGCTCCTTTAGTCC 59.176 52.174 23.26 0.00 0.00 3.85
1544 1584 4.079096 TCCTAGCTAGCTCCTTTAGTCCTT 60.079 45.833 23.26 0.00 0.00 3.36
1545 1585 4.279922 CCTAGCTAGCTCCTTTAGTCCTTC 59.720 50.000 23.26 0.00 0.00 3.46
1546 1586 3.989056 AGCTAGCTCCTTTAGTCCTTCT 58.011 45.455 12.68 0.00 0.00 2.85
1547 1587 5.132043 AGCTAGCTCCTTTAGTCCTTCTA 57.868 43.478 12.68 0.00 0.00 2.10
1631 1679 2.868964 TACTCCTAGCCTGGGACAAT 57.131 50.000 0.00 0.00 38.70 2.71
1734 1786 0.253044 GACATTGCTGGTAGCCCTCA 59.747 55.000 0.00 0.00 41.51 3.86
1784 1836 0.251916 TGTTCGATCGGCTTTGGGAT 59.748 50.000 16.41 0.00 0.00 3.85
1802 1854 1.511305 TGCGGTCTACAGCACTAGC 59.489 57.895 3.74 0.00 41.86 3.42
1822 1874 2.022195 CAGGAATGCAGGTGAGGATTG 58.978 52.381 0.00 0.00 29.17 2.67
1826 1878 2.951269 TGCAGGTGAGGATTGCAAG 58.049 52.632 4.94 0.00 44.13 4.01
1919 1971 9.898152 AAGGACAGATTAGATTTTTAGAGAAGG 57.102 33.333 0.00 0.00 0.00 3.46
1920 1972 7.990314 AGGACAGATTAGATTTTTAGAGAAGGC 59.010 37.037 0.00 0.00 0.00 4.35
1921 1973 7.990314 GGACAGATTAGATTTTTAGAGAAGGCT 59.010 37.037 0.00 0.00 0.00 4.58
1955 2020 3.086733 GCCTAGCTCGGCTTTGAAT 57.913 52.632 21.53 0.00 46.63 2.57
1959 2024 3.565902 GCCTAGCTCGGCTTTGAATTAAT 59.434 43.478 21.53 0.00 46.63 1.40
1980 2045 3.451894 GCAATCAACCGGCCAGGG 61.452 66.667 16.44 6.84 46.96 4.45
1996 2061 1.818674 CAGGGTTTCAAGCATACACCC 59.181 52.381 0.00 0.00 46.77 4.61
1998 2063 2.456577 GGGTTTCAAGCATACACCCAT 58.543 47.619 0.54 0.00 45.82 4.00
2012 2077 0.179000 ACCCATAGGCAGCGAGAAAG 59.821 55.000 0.00 0.00 36.11 2.62
2072 2137 3.371898 CAGCAATGAAGCATGAAGTCGTA 59.628 43.478 0.00 0.00 36.85 3.43
2114 2179 0.307760 AACAAAGCGCCGAGAACAAG 59.692 50.000 2.29 0.00 0.00 3.16
2154 2220 3.628646 AAGGCAGACCCGCACCATC 62.629 63.158 0.00 0.00 39.21 3.51
2214 2280 2.159198 GGCACATCCAACAACATCCATC 60.159 50.000 0.00 0.00 34.01 3.51
2216 2282 3.181493 GCACATCCAACAACATCCATCTC 60.181 47.826 0.00 0.00 0.00 2.75
2304 2370 2.173519 CAAGAACAATGGTGGATGCCT 58.826 47.619 0.00 0.00 0.00 4.75
2335 2401 2.754648 CACATACAGTGGGTCAGCG 58.245 57.895 0.00 0.00 44.69 5.18
2369 2437 1.945354 TACCGGCGCTTCTCCTCAAG 61.945 60.000 7.64 0.00 0.00 3.02
2381 2449 0.108585 TCCTCAAGCAGAACACCACC 59.891 55.000 0.00 0.00 0.00 4.61
2387 2455 2.358737 CAGAACACCACCGCTCCC 60.359 66.667 0.00 0.00 0.00 4.30
2420 2488 1.546323 CCAGAGGAGGAAAAGCAGCAA 60.546 52.381 0.00 0.00 0.00 3.91
2485 2553 4.436998 CCCACCGACGAGCACCTC 62.437 72.222 0.00 0.00 0.00 3.85
2486 2554 4.436998 CCACCGACGAGCACCTCC 62.437 72.222 0.00 0.00 0.00 4.30
2487 2555 4.436998 CACCGACGAGCACCTCCC 62.437 72.222 0.00 0.00 0.00 4.30
2488 2556 4.988716 ACCGACGAGCACCTCCCA 62.989 66.667 0.00 0.00 0.00 4.37
2489 2557 3.691342 CCGACGAGCACCTCCCAA 61.691 66.667 0.00 0.00 0.00 4.12
2490 2558 2.342279 CGACGAGCACCTCCCAAA 59.658 61.111 0.00 0.00 0.00 3.28
2491 2559 1.301401 CGACGAGCACCTCCCAAAA 60.301 57.895 0.00 0.00 0.00 2.44
2492 2560 1.566018 CGACGAGCACCTCCCAAAAC 61.566 60.000 0.00 0.00 0.00 2.43
2493 2561 1.566018 GACGAGCACCTCCCAAAACG 61.566 60.000 0.00 0.00 0.00 3.60
2494 2562 2.325082 CGAGCACCTCCCAAAACGG 61.325 63.158 0.00 0.00 0.00 4.44
2495 2563 2.597510 AGCACCTCCCAAAACGGC 60.598 61.111 0.00 0.00 0.00 5.68
2496 2564 4.038080 GCACCTCCCAAAACGGCG 62.038 66.667 4.80 4.80 0.00 6.46
2497 2565 2.593436 CACCTCCCAAAACGGCGT 60.593 61.111 6.77 6.77 0.00 5.68
2498 2566 2.281276 ACCTCCCAAAACGGCGTC 60.281 61.111 15.17 0.00 0.00 5.19
2499 2567 2.032071 CCTCCCAAAACGGCGTCT 59.968 61.111 15.17 0.00 0.00 4.18
2500 2568 1.599797 CCTCCCAAAACGGCGTCTT 60.600 57.895 15.17 1.38 0.00 3.01
2501 2569 1.574702 CCTCCCAAAACGGCGTCTTC 61.575 60.000 15.17 0.00 0.00 2.87
2502 2570 0.882927 CTCCCAAAACGGCGTCTTCA 60.883 55.000 15.17 0.00 0.00 3.02
2503 2571 0.464013 TCCCAAAACGGCGTCTTCAA 60.464 50.000 15.17 0.00 0.00 2.69
2504 2572 0.040425 CCCAAAACGGCGTCTTCAAG 60.040 55.000 15.17 0.00 0.00 3.02
2505 2573 0.941542 CCAAAACGGCGTCTTCAAGA 59.058 50.000 15.17 0.00 0.00 3.02
2506 2574 1.332375 CCAAAACGGCGTCTTCAAGAA 59.668 47.619 15.17 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.338249 AGTGATACAAAAGCTCACGCAT 58.662 40.909 0.00 0.00 43.15 4.73
1 2 2.766313 AGTGATACAAAAGCTCACGCA 58.234 42.857 0.00 0.00 43.15 5.24
2 3 3.242123 GCTAGTGATACAAAAGCTCACGC 60.242 47.826 0.00 0.00 43.15 5.34
3 4 3.307242 GGCTAGTGATACAAAAGCTCACG 59.693 47.826 0.00 0.00 43.15 4.35
4 5 3.307242 CGGCTAGTGATACAAAAGCTCAC 59.693 47.826 0.00 0.00 39.63 3.51
5 6 3.521560 CGGCTAGTGATACAAAAGCTCA 58.478 45.455 0.00 0.00 33.67 4.26
6 7 2.285488 GCGGCTAGTGATACAAAAGCTC 59.715 50.000 0.00 0.00 33.67 4.09
7 8 2.280628 GCGGCTAGTGATACAAAAGCT 58.719 47.619 0.00 0.00 33.67 3.74
8 9 1.330829 GGCGGCTAGTGATACAAAAGC 59.669 52.381 0.00 0.00 0.00 3.51
9 10 1.593006 CGGCGGCTAGTGATACAAAAG 59.407 52.381 7.61 0.00 0.00 2.27
10 11 1.647346 CGGCGGCTAGTGATACAAAA 58.353 50.000 7.61 0.00 0.00 2.44
11 12 0.808453 GCGGCGGCTAGTGATACAAA 60.808 55.000 9.78 0.00 35.83 2.83
12 13 1.227147 GCGGCGGCTAGTGATACAA 60.227 57.895 9.78 0.00 35.83 2.41
13 14 2.415843 GCGGCGGCTAGTGATACA 59.584 61.111 9.78 0.00 35.83 2.29
14 15 2.355956 GGCGGCGGCTAGTGATAC 60.356 66.667 27.22 0.00 39.81 2.24
15 16 2.520982 AGGCGGCGGCTAGTGATA 60.521 61.111 35.47 0.00 36.44 2.15
16 17 3.917760 GAGGCGGCGGCTAGTGAT 61.918 66.667 36.29 13.83 38.98 3.06
40 41 0.547712 TGGGAGGCAGAAAGCTAGGT 60.548 55.000 0.00 0.00 44.79 3.08
174 176 2.375174 TGAGCAGGACACAAACCCTAAT 59.625 45.455 0.00 0.00 0.00 1.73
268 271 1.619827 CACCCACCAACAATGCAAGAT 59.380 47.619 0.00 0.00 0.00 2.40
322 325 3.125146 CGAACAGATCCGAGCAAATTCAA 59.875 43.478 0.00 0.00 0.00 2.69
325 328 2.673368 GACGAACAGATCCGAGCAAATT 59.327 45.455 0.00 0.00 0.00 1.82
353 356 4.868450 ATCTGAAAACACACGAACGAAA 57.132 36.364 0.14 0.00 0.00 3.46
417 420 1.671850 CGTAGAACCAACGCACCAGAT 60.672 52.381 0.00 0.00 33.04 2.90
451 454 1.199558 AGTAGACAGTCGGAAAGTCGC 59.800 52.381 0.00 4.11 37.36 5.19
626 630 5.245075 TGCGGGAAAAACTTCCAATCTATTT 59.755 36.000 6.26 0.00 42.89 1.40
673 677 6.123045 TCCTTCTTAGTTACCCTTCAAAGG 57.877 41.667 1.54 1.54 46.06 3.11
674 678 7.225011 AGTTCCTTCTTAGTTACCCTTCAAAG 58.775 38.462 0.00 0.00 0.00 2.77
675 679 7.145474 AGTTCCTTCTTAGTTACCCTTCAAA 57.855 36.000 0.00 0.00 0.00 2.69
676 680 6.239800 GGAGTTCCTTCTTAGTTACCCTTCAA 60.240 42.308 0.00 0.00 0.00 2.69
677 681 5.247792 GGAGTTCCTTCTTAGTTACCCTTCA 59.752 44.000 0.00 0.00 0.00 3.02
678 682 5.338219 GGGAGTTCCTTCTTAGTTACCCTTC 60.338 48.000 0.00 0.00 35.95 3.46
679 683 4.535294 GGGAGTTCCTTCTTAGTTACCCTT 59.465 45.833 0.00 0.00 35.95 3.95
680 684 4.102598 GGGAGTTCCTTCTTAGTTACCCT 58.897 47.826 0.00 0.00 35.95 4.34
681 685 3.842436 TGGGAGTTCCTTCTTAGTTACCC 59.158 47.826 0.00 0.00 36.20 3.69
682 686 4.776308 TCTGGGAGTTCCTTCTTAGTTACC 59.224 45.833 0.00 0.00 36.20 2.85
683 687 5.997384 TCTGGGAGTTCCTTCTTAGTTAC 57.003 43.478 0.00 0.00 36.20 2.50
684 688 5.360144 CGATCTGGGAGTTCCTTCTTAGTTA 59.640 44.000 0.00 0.00 36.20 2.24
685 689 4.160626 CGATCTGGGAGTTCCTTCTTAGTT 59.839 45.833 0.00 0.00 36.20 2.24
686 690 3.702045 CGATCTGGGAGTTCCTTCTTAGT 59.298 47.826 0.00 0.00 36.20 2.24
687 691 3.491792 GCGATCTGGGAGTTCCTTCTTAG 60.492 52.174 0.00 0.00 36.20 2.18
688 692 2.431057 GCGATCTGGGAGTTCCTTCTTA 59.569 50.000 0.00 0.00 36.20 2.10
689 693 1.208293 GCGATCTGGGAGTTCCTTCTT 59.792 52.381 0.00 0.00 36.20 2.52
690 694 0.827368 GCGATCTGGGAGTTCCTTCT 59.173 55.000 0.00 0.00 36.20 2.85
691 695 0.537188 TGCGATCTGGGAGTTCCTTC 59.463 55.000 0.00 0.00 36.20 3.46
692 696 0.539051 CTGCGATCTGGGAGTTCCTT 59.461 55.000 0.00 0.00 36.20 3.36
693 697 1.965754 GCTGCGATCTGGGAGTTCCT 61.966 60.000 0.00 0.00 36.20 3.36
694 698 1.522580 GCTGCGATCTGGGAGTTCC 60.523 63.158 0.00 0.00 0.00 3.62
695 699 1.522580 GGCTGCGATCTGGGAGTTC 60.523 63.158 0.00 0.00 0.00 3.01
696 700 2.586792 GGCTGCGATCTGGGAGTT 59.413 61.111 0.00 0.00 0.00 3.01
697 701 3.842923 CGGCTGCGATCTGGGAGT 61.843 66.667 0.00 0.00 0.00 3.85
698 702 3.376935 AACGGCTGCGATCTGGGAG 62.377 63.158 0.00 0.00 0.00 4.30
699 703 3.390521 AACGGCTGCGATCTGGGA 61.391 61.111 0.00 0.00 0.00 4.37
700 704 3.197790 CAACGGCTGCGATCTGGG 61.198 66.667 0.00 0.00 0.00 4.45
701 705 3.869272 GCAACGGCTGCGATCTGG 61.869 66.667 0.00 0.00 42.37 3.86
787 798 2.163412 TGGCAATCACGAACAATTAGCC 59.837 45.455 0.00 0.00 39.95 3.93
792 803 1.401552 CGGATGGCAATCACGAACAAT 59.598 47.619 2.85 0.00 34.17 2.71
854 865 5.523883 TTAGTTATTTAGTGCCTTGGGGT 57.476 39.130 0.00 0.00 34.45 4.95
855 866 6.183360 CCAATTAGTTATTTAGTGCCTTGGGG 60.183 42.308 0.00 0.00 0.00 4.96
856 867 6.605594 TCCAATTAGTTATTTAGTGCCTTGGG 59.394 38.462 0.00 0.00 32.29 4.12
857 868 7.556275 TCTCCAATTAGTTATTTAGTGCCTTGG 59.444 37.037 0.00 0.00 0.00 3.61
858 869 8.398665 GTCTCCAATTAGTTATTTAGTGCCTTG 58.601 37.037 0.00 0.00 0.00 3.61
859 870 8.329502 AGTCTCCAATTAGTTATTTAGTGCCTT 58.670 33.333 0.00 0.00 0.00 4.35
860 871 7.770897 CAGTCTCCAATTAGTTATTTAGTGCCT 59.229 37.037 0.00 0.00 0.00 4.75
873 884 5.721232 ACGTCTTTACCAGTCTCCAATTAG 58.279 41.667 0.00 0.00 0.00 1.73
879 890 9.408069 CATATATTTACGTCTTTACCAGTCTCC 57.592 37.037 0.00 0.00 0.00 3.71
880 891 8.913656 GCATATATTTACGTCTTTACCAGTCTC 58.086 37.037 0.00 0.00 0.00 3.36
881 892 7.871463 GGCATATATTTACGTCTTTACCAGTCT 59.129 37.037 0.00 0.00 0.00 3.24
882 893 7.117379 GGGCATATATTTACGTCTTTACCAGTC 59.883 40.741 0.00 0.00 0.00 3.51
883 894 6.932960 GGGCATATATTTACGTCTTTACCAGT 59.067 38.462 0.00 0.00 0.00 4.00
884 895 6.370718 GGGGCATATATTTACGTCTTTACCAG 59.629 42.308 0.00 0.00 0.00 4.00
885 896 6.232692 GGGGCATATATTTACGTCTTTACCA 58.767 40.000 0.00 0.00 0.00 3.25
886 897 5.349543 CGGGGCATATATTTACGTCTTTACC 59.650 44.000 0.00 0.00 0.00 2.85
887 898 5.928264 ACGGGGCATATATTTACGTCTTTAC 59.072 40.000 0.00 0.00 0.00 2.01
888 899 6.100404 ACGGGGCATATATTTACGTCTTTA 57.900 37.500 0.00 0.00 0.00 1.85
889 900 4.964593 ACGGGGCATATATTTACGTCTTT 58.035 39.130 0.00 0.00 0.00 2.52
890 901 4.562143 GGACGGGGCATATATTTACGTCTT 60.562 45.833 19.59 0.00 45.79 3.01
891 902 3.056322 GGACGGGGCATATATTTACGTCT 60.056 47.826 19.59 0.00 45.79 4.18
892 903 3.256558 GGACGGGGCATATATTTACGTC 58.743 50.000 15.29 15.29 45.80 4.34
893 904 2.633967 TGGACGGGGCATATATTTACGT 59.366 45.455 0.00 0.00 35.64 3.57
894 905 3.322211 TGGACGGGGCATATATTTACG 57.678 47.619 0.00 0.00 0.00 3.18
895 906 4.814771 GCTATGGACGGGGCATATATTTAC 59.185 45.833 0.00 0.00 0.00 2.01
896 907 4.141574 GGCTATGGACGGGGCATATATTTA 60.142 45.833 0.00 0.00 0.00 1.40
897 908 3.371595 GGCTATGGACGGGGCATATATTT 60.372 47.826 0.00 0.00 0.00 1.40
898 909 2.172717 GGCTATGGACGGGGCATATATT 59.827 50.000 0.00 0.00 0.00 1.28
899 910 1.768870 GGCTATGGACGGGGCATATAT 59.231 52.381 0.00 0.00 0.00 0.86
900 911 1.200519 GGCTATGGACGGGGCATATA 58.799 55.000 0.00 0.00 0.00 0.86
901 912 1.899437 CGGCTATGGACGGGGCATAT 61.899 60.000 0.00 0.00 40.87 1.78
902 913 2.579657 CGGCTATGGACGGGGCATA 61.580 63.158 0.00 0.00 40.87 3.14
903 914 3.941188 CGGCTATGGACGGGGCAT 61.941 66.667 0.00 0.00 40.87 4.40
905 916 4.301027 CTCGGCTATGGACGGGGC 62.301 72.222 3.82 0.00 41.55 5.80
906 917 4.301027 GCTCGGCTATGGACGGGG 62.301 72.222 6.25 0.00 46.20 5.73
908 919 3.544167 CTCGCTCGGCTATGGACGG 62.544 68.421 3.82 0.00 45.36 4.79
909 920 2.050895 CTCGCTCGGCTATGGACG 60.051 66.667 0.00 0.00 46.93 4.79
910 921 2.136196 CTCCTCGCTCGGCTATGGAC 62.136 65.000 0.00 0.00 0.00 4.02
911 922 1.899054 CTCCTCGCTCGGCTATGGA 60.899 63.158 0.00 0.00 0.00 3.41
924 935 1.203250 CCTTATCCTCCCTCCCTCCTC 60.203 61.905 0.00 0.00 0.00 3.71
925 936 0.871024 CCTTATCCTCCCTCCCTCCT 59.129 60.000 0.00 0.00 0.00 3.69
926 937 0.568697 ACCTTATCCTCCCTCCCTCC 59.431 60.000 0.00 0.00 0.00 4.30
930 941 3.937751 TCCTTTACCTTATCCTCCCTCC 58.062 50.000 0.00 0.00 0.00 4.30
952 963 4.749310 CGTCTCGCCTTGCCTGCT 62.749 66.667 0.00 0.00 0.00 4.24
992 1007 0.540454 TCCTGCTGCCATCTCTCTTG 59.460 55.000 0.00 0.00 0.00 3.02
993 1008 1.065564 GTTCCTGCTGCCATCTCTCTT 60.066 52.381 0.00 0.00 0.00 2.85
1040 1055 0.636647 GATGGGAATTTGGGGGAGGT 59.363 55.000 0.00 0.00 0.00 3.85
1050 1065 0.911769 TGCTGACCGAGATGGGAATT 59.088 50.000 0.00 0.00 44.64 2.17
1088 1103 3.149338 CTCCTCCTGCTGCTAGCGG 62.149 68.421 19.74 19.74 46.26 5.52
1512 1527 4.936081 TAGCTAGGAGGGGGCGCC 62.936 72.222 21.18 21.18 0.00 6.53
1513 1528 3.307108 CTAGCTAGGAGGGGGCGC 61.307 72.222 13.32 0.00 0.00 6.53
1515 1530 1.911269 GAGCTAGCTAGGAGGGGGC 60.911 68.421 19.38 6.82 0.00 5.80
1518 1533 2.095604 AAAGGAGCTAGCTAGGAGGG 57.904 55.000 19.38 0.00 0.00 4.30
1519 1534 3.824443 GACTAAAGGAGCTAGCTAGGAGG 59.176 52.174 19.38 9.15 0.00 4.30
1520 1535 3.824443 GGACTAAAGGAGCTAGCTAGGAG 59.176 52.174 19.38 12.88 0.00 3.69
1521 1536 3.464080 AGGACTAAAGGAGCTAGCTAGGA 59.536 47.826 19.38 0.57 0.00 2.94
1537 1577 8.143673 TCAGTGAACTAGTAGTAGAAGGACTA 57.856 38.462 11.68 0.00 0.00 2.59
1538 1578 7.018487 TCAGTGAACTAGTAGTAGAAGGACT 57.982 40.000 11.68 4.94 0.00 3.85
1539 1579 7.626876 GCTTCAGTGAACTAGTAGTAGAAGGAC 60.627 44.444 11.68 2.93 32.73 3.85
1540 1580 6.374894 GCTTCAGTGAACTAGTAGTAGAAGGA 59.625 42.308 11.68 9.18 32.73 3.36
1542 1582 7.385778 AGCTTCAGTGAACTAGTAGTAGAAG 57.614 40.000 11.68 12.30 34.61 2.85
1544 1584 7.361031 CGAAAGCTTCAGTGAACTAGTAGTAGA 60.361 40.741 11.68 0.00 0.00 2.59
1545 1585 6.743627 CGAAAGCTTCAGTGAACTAGTAGTAG 59.256 42.308 2.50 2.87 0.00 2.57
1546 1586 6.206243 ACGAAAGCTTCAGTGAACTAGTAGTA 59.794 38.462 2.50 0.00 0.00 1.82
1547 1587 5.009811 ACGAAAGCTTCAGTGAACTAGTAGT 59.990 40.000 0.00 0.00 0.00 2.73
1608 1653 5.610429 TTGTCCCAGGCTAGGAGTATATA 57.390 43.478 0.50 0.00 32.84 0.86
1648 1700 3.828786 TCGAATGAACTCAAACGATCGA 58.171 40.909 24.34 0.00 34.56 3.59
1649 1701 3.851969 TCTCGAATGAACTCAAACGATCG 59.148 43.478 14.88 14.88 37.08 3.69
1650 1702 5.722592 GCTTCTCGAATGAACTCAAACGATC 60.723 44.000 10.39 0.00 37.08 3.69
1651 1703 4.092091 GCTTCTCGAATGAACTCAAACGAT 59.908 41.667 10.39 0.00 37.08 3.73
1784 1836 1.248101 TGCTAGTGCTGTAGACCGCA 61.248 55.000 0.00 0.00 40.48 5.69
1802 1854 2.022195 CAATCCTCACCTGCATTCCTG 58.978 52.381 0.00 0.00 0.00 3.86
1826 1878 2.394563 GCTCCAGCGCCAAGAGAAC 61.395 63.158 19.70 2.82 0.00 3.01
1918 1970 0.316841 CTCAAGCCCTATCTCGAGCC 59.683 60.000 7.81 0.00 0.00 4.70
1919 1971 0.319469 GCTCAAGCCCTATCTCGAGC 60.319 60.000 7.81 0.00 39.10 5.03
1920 1972 3.883997 GCTCAAGCCCTATCTCGAG 57.116 57.895 5.93 5.93 34.31 4.04
1955 2020 3.764434 TGGCCGGTTGATTGCTTTATTAA 59.236 39.130 1.90 0.00 0.00 1.40
1959 2024 1.173043 CTGGCCGGTTGATTGCTTTA 58.827 50.000 2.29 0.00 0.00 1.85
1980 2045 3.066760 GCCTATGGGTGTATGCTTGAAAC 59.933 47.826 0.00 0.00 34.45 2.78
1996 2061 3.436704 TGTTTTCTTTCTCGCTGCCTATG 59.563 43.478 0.00 0.00 0.00 2.23
1998 2063 2.806244 GTGTTTTCTTTCTCGCTGCCTA 59.194 45.455 0.00 0.00 0.00 3.93
2012 2077 6.417191 TGTATATTTCCGCTCTGTGTTTTC 57.583 37.500 0.00 0.00 0.00 2.29
2072 2137 4.049817 AGGAGGACCTCGGCGTCT 62.050 66.667 15.46 3.45 44.13 4.18
2114 2179 2.383527 CCTCTTGAGCCGCGTGTTC 61.384 63.158 4.92 4.89 0.00 3.18
2154 2220 3.910914 TTGGTGATGGCGTTCCCCG 62.911 63.158 0.00 0.00 40.40 5.73
2161 2227 1.134818 TGTAGTAGCTTGGTGATGGCG 60.135 52.381 0.00 0.00 0.00 5.69
2216 2282 2.359975 GGTTGTGGCCTCCTTCGG 60.360 66.667 3.32 0.00 0.00 4.30
2265 2331 3.194005 TGGGGAACTTTATCATCTCGC 57.806 47.619 0.00 0.00 0.00 5.03
2304 2370 1.004862 TGTATGTGGCCATTTTCCGGA 59.995 47.619 9.72 0.00 32.29 5.14
2335 2401 2.820037 GTAGCTCGGCTTGGGTGC 60.820 66.667 3.71 0.00 40.44 5.01
2350 2418 1.945354 CTTGAGGAGAAGCGCCGGTA 61.945 60.000 2.29 0.00 0.00 4.02
2369 2437 3.050275 GGAGCGGTGGTGTTCTGC 61.050 66.667 0.00 0.00 37.44 4.26
2381 2449 3.626996 TTGCTGGATGTGGGGAGCG 62.627 63.158 0.00 0.00 33.97 5.03
2387 2455 0.679002 CCTCTGGTTGCTGGATGTGG 60.679 60.000 0.00 0.00 0.00 4.17
2391 2459 0.252881 TCCTCCTCTGGTTGCTGGAT 60.253 55.000 0.00 0.00 0.00 3.41
2420 2488 0.905337 GTGGTGCCCTCTGTCCTAGT 60.905 60.000 0.00 0.00 0.00 2.57
2474 2542 1.566018 CGTTTTGGGAGGTGCTCGTC 61.566 60.000 0.00 0.00 0.00 4.20
2475 2543 1.597027 CGTTTTGGGAGGTGCTCGT 60.597 57.895 0.00 0.00 0.00 4.18
2476 2544 2.325082 CCGTTTTGGGAGGTGCTCG 61.325 63.158 0.00 0.00 0.00 5.03
2477 2545 2.626780 GCCGTTTTGGGAGGTGCTC 61.627 63.158 0.00 0.00 38.63 4.26
2478 2546 2.597510 GCCGTTTTGGGAGGTGCT 60.598 61.111 0.00 0.00 38.63 4.40
2479 2547 4.038080 CGCCGTTTTGGGAGGTGC 62.038 66.667 0.00 0.00 38.63 5.01
2480 2548 2.593436 ACGCCGTTTTGGGAGGTG 60.593 61.111 0.00 0.00 41.04 4.00
2481 2549 2.281276 GACGCCGTTTTGGGAGGT 60.281 61.111 0.00 0.00 38.63 3.85
2482 2550 1.574702 GAAGACGCCGTTTTGGGAGG 61.575 60.000 0.00 0.00 38.63 4.30
2483 2551 0.882927 TGAAGACGCCGTTTTGGGAG 60.883 55.000 0.00 0.00 38.63 4.30
2484 2552 0.464013 TTGAAGACGCCGTTTTGGGA 60.464 50.000 0.00 0.00 38.63 4.37
2485 2553 0.040425 CTTGAAGACGCCGTTTTGGG 60.040 55.000 0.00 0.00 38.63 4.12
2486 2554 0.941542 TCTTGAAGACGCCGTTTTGG 59.058 50.000 0.00 0.00 42.50 3.28
2487 2555 2.748461 TTCTTGAAGACGCCGTTTTG 57.252 45.000 0.00 0.00 0.00 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.