Multiple sequence alignment - TraesCS1A01G197000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G197000 chr1A 100.000 5939 0 0 1 5939 355319902 355325840 0.000000e+00 10968.0
1 TraesCS1A01G197000 chr1D 92.710 2661 132 24 3169 5799 283562510 283565138 0.000000e+00 3783.0
2 TraesCS1A01G197000 chr1D 96.163 886 23 6 1737 2620 283551435 283552311 0.000000e+00 1437.0
3 TraesCS1A01G197000 chr1D 95.629 572 20 5 2617 3184 283552461 283553031 0.000000e+00 913.0
4 TraesCS1A01G197000 chr1D 85.252 773 48 23 114 873 283549624 283550343 0.000000e+00 736.0
5 TraesCS1A01G197000 chr1D 94.269 349 19 1 870 1217 283550543 283550891 3.150000e-147 532.0
6 TraesCS1A01G197000 chr1D 89.398 349 24 3 1264 1599 283550902 283551250 1.530000e-115 427.0
7 TraesCS1A01G197000 chr1D 88.396 293 33 1 15 307 318585917 318585626 9.470000e-93 351.0
8 TraesCS1A01G197000 chr1D 73.806 691 129 45 3785 4455 13506964 13507622 5.990000e-55 226.0
9 TraesCS1A01G197000 chr1D 91.919 99 8 0 1604 1702 283551340 283551438 8.030000e-29 139.0
10 TraesCS1A01G197000 chr1D 77.143 140 24 7 2425 2561 486708434 486708568 2.300000e-09 75.0
11 TraesCS1A01G197000 chr1B 91.474 2510 139 34 3317 5799 385160916 385163377 0.000000e+00 3380.0
12 TraesCS1A01G197000 chr1B 91.120 2117 133 29 915 2992 385158656 385160756 0.000000e+00 2817.0
13 TraesCS1A01G197000 chr1B 85.563 568 49 9 329 873 385157462 385158019 1.120000e-156 564.0
14 TraesCS1A01G197000 chr1B 79.286 140 21 7 2425 2561 677600625 677600759 2.280000e-14 91.6
15 TraesCS1A01G197000 chr6D 88.814 295 29 3 15 307 69292653 69292945 5.660000e-95 359.0
16 TraesCS1A01G197000 chr6D 76.872 454 84 16 2105 2553 17233249 17232812 2.770000e-58 237.0
17 TraesCS1A01G197000 chr6D 75.824 455 85 20 2116 2563 17286418 17285982 2.170000e-49 207.0
18 TraesCS1A01G197000 chr6D 78.601 243 46 3 1755 1997 17313140 17312904 7.970000e-34 156.0
19 TraesCS1A01G197000 chr4D 88.095 294 34 1 15 307 226455334 226455041 1.220000e-91 348.0
20 TraesCS1A01G197000 chr2A 87.797 295 34 2 15 307 729554951 729555245 1.580000e-90 344.0
21 TraesCS1A01G197000 chr2A 87.372 293 37 0 15 307 459017296 459017004 2.650000e-88 337.0
22 TraesCS1A01G197000 chr7D 87.755 294 35 1 13 306 85010172 85009880 5.700000e-90 342.0
23 TraesCS1A01G197000 chr5A 87.671 292 36 0 17 308 647359844 647359553 2.050000e-89 340.0
24 TraesCS1A01G197000 chr5A 87.291 299 34 4 14 309 281137769 281137472 7.370000e-89 339.0
25 TraesCS1A01G197000 chr6A 87.086 302 36 3 15 314 614484157 614483857 7.370000e-89 339.0
26 TraesCS1A01G197000 chr6A 76.821 453 86 14 2105 2553 17830068 17829631 2.770000e-58 237.0
27 TraesCS1A01G197000 chr6A 81.667 180 33 0 1818 1997 17914676 17914497 3.710000e-32 150.0
28 TraesCS1A01G197000 chr2B 84.211 228 34 2 1780 2006 40856071 40856297 2.790000e-53 220.0
29 TraesCS1A01G197000 chr2B 75.446 448 92 13 2118 2554 40908446 40908006 1.010000e-47 202.0
30 TraesCS1A01G197000 chr2B 74.160 476 103 16 2096 2559 40856461 40856928 4.730000e-41 180.0
31 TraesCS1A01G197000 chr5D 75.099 506 106 17 2062 2554 549864239 549864737 1.000000e-52 219.0
32 TraesCS1A01G197000 chr5D 79.288 309 52 8 3448 3750 549878517 549878819 7.800000e-49 206.0
33 TraesCS1A01G197000 chr5B 79.935 309 50 6 3448 3750 701531542 701531844 3.600000e-52 217.0
34 TraesCS1A01G197000 chr5B 81.818 253 43 1 3451 3703 701514859 701515108 6.030000e-50 209.0
35 TraesCS1A01G197000 chr5B 80.488 246 45 1 3448 3693 701518899 701519141 1.020000e-42 185.0
36 TraesCS1A01G197000 chr2D 75.839 447 92 13 2118 2554 25175622 25175182 4.660000e-51 213.0
37 TraesCS1A01G197000 chr2D 100.000 30 0 0 2482 2511 484902543 484902572 8.310000e-04 56.5
38 TraesCS1A01G197000 chr4A 81.739 230 34 4 3451 3679 617877076 617876854 1.020000e-42 185.0
39 TraesCS1A01G197000 chr7B 78.027 223 38 9 1783 2001 748655381 748655166 4.830000e-26 130.0
40 TraesCS1A01G197000 chr3B 88.679 53 6 0 2476 2528 726487097 726487045 1.380000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G197000 chr1A 355319902 355325840 5938 False 10968.000000 10968 100.000000 1 5939 1 chr1A.!!$F1 5938
1 TraesCS1A01G197000 chr1D 283562510 283565138 2628 False 3783.000000 3783 92.710000 3169 5799 1 chr1D.!!$F2 2630
2 TraesCS1A01G197000 chr1D 283549624 283553031 3407 False 697.333333 1437 92.105000 114 3184 6 chr1D.!!$F4 3070
3 TraesCS1A01G197000 chr1D 13506964 13507622 658 False 226.000000 226 73.806000 3785 4455 1 chr1D.!!$F1 670
4 TraesCS1A01G197000 chr1B 385157462 385163377 5915 False 2253.666667 3380 89.385667 329 5799 3 chr1B.!!$F2 5470

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
256 257 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.0 0.00 0.0 0.00 4.02 F
1059 1727 0.388659 AGAGGATGCTGCTCGATGAC 59.611 55.0 0.00 0.0 40.01 3.06 F
1118 1786 2.028930 AGGACATCACAGACCGTTTCTC 60.029 50.0 0.00 0.0 28.96 2.87 F
3068 4018 0.758734 TCCCCATGGATTCTAGCACG 59.241 55.0 15.22 0.0 35.03 5.34 F
3852 4807 0.460284 AAGCACAAGATACGGAGCGG 60.460 55.0 0.00 0.0 0.00 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1694 2463 0.033504 CCTCGTGGTGTGTTGTAGCT 59.966 55.000 0.00 0.0 0.00 3.32 R
2663 3600 1.284785 AGCTTAGGTGCCATTGCCTAA 59.715 47.619 0.00 0.0 42.96 2.69 R
3071 4021 1.203994 GGCTTGCACATGAGCTTGAAT 59.796 47.619 16.24 0.0 38.89 2.57 R
3966 4921 0.109086 CAGTCTGTAGGTGTGAGCCG 60.109 60.000 0.00 0.0 0.00 5.52 R
5465 6443 0.107654 GGAGGGGATCAAAGTCACCG 60.108 60.000 0.00 0.0 46.65 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.449464 TCCAGCATCATTTTCCTGTGG 58.551 47.619 0.00 0.00 0.00 4.17
21 22 2.173519 CCAGCATCATTTTCCTGTGGT 58.826 47.619 0.00 0.00 0.00 4.16
22 23 2.564062 CCAGCATCATTTTCCTGTGGTT 59.436 45.455 0.00 0.00 0.00 3.67
23 24 3.581755 CAGCATCATTTTCCTGTGGTTG 58.418 45.455 0.00 0.00 0.00 3.77
24 25 2.564062 AGCATCATTTTCCTGTGGTTGG 59.436 45.455 0.00 0.00 0.00 3.77
25 26 2.354003 GCATCATTTTCCTGTGGTTGGG 60.354 50.000 0.00 0.00 0.00 4.12
26 27 2.765689 TCATTTTCCTGTGGTTGGGT 57.234 45.000 0.00 0.00 0.00 4.51
27 28 2.315176 TCATTTTCCTGTGGTTGGGTG 58.685 47.619 0.00 0.00 0.00 4.61
28 29 2.091610 TCATTTTCCTGTGGTTGGGTGA 60.092 45.455 0.00 0.00 0.00 4.02
29 30 2.765689 TTTTCCTGTGGTTGGGTGAT 57.234 45.000 0.00 0.00 0.00 3.06
30 31 2.765689 TTTCCTGTGGTTGGGTGATT 57.234 45.000 0.00 0.00 0.00 2.57
31 32 3.885976 TTTCCTGTGGTTGGGTGATTA 57.114 42.857 0.00 0.00 0.00 1.75
32 33 3.433306 TTCCTGTGGTTGGGTGATTAG 57.567 47.619 0.00 0.00 0.00 1.73
33 34 2.626785 TCCTGTGGTTGGGTGATTAGA 58.373 47.619 0.00 0.00 0.00 2.10
34 35 2.571653 TCCTGTGGTTGGGTGATTAGAG 59.428 50.000 0.00 0.00 0.00 2.43
35 36 2.356125 CCTGTGGTTGGGTGATTAGAGG 60.356 54.545 0.00 0.00 0.00 3.69
36 37 1.633432 TGTGGTTGGGTGATTAGAGGG 59.367 52.381 0.00 0.00 0.00 4.30
37 38 1.913419 GTGGTTGGGTGATTAGAGGGA 59.087 52.381 0.00 0.00 0.00 4.20
38 39 1.913419 TGGTTGGGTGATTAGAGGGAC 59.087 52.381 0.00 0.00 0.00 4.46
39 40 1.913419 GGTTGGGTGATTAGAGGGACA 59.087 52.381 0.00 0.00 0.00 4.02
40 41 2.509964 GGTTGGGTGATTAGAGGGACAT 59.490 50.000 0.00 0.00 0.00 3.06
41 42 3.053619 GGTTGGGTGATTAGAGGGACATT 60.054 47.826 0.00 0.00 0.00 2.71
42 43 3.931907 TGGGTGATTAGAGGGACATTG 57.068 47.619 0.00 0.00 0.00 2.82
43 44 2.509548 TGGGTGATTAGAGGGACATTGG 59.490 50.000 0.00 0.00 0.00 3.16
44 45 2.509964 GGGTGATTAGAGGGACATTGGT 59.490 50.000 0.00 0.00 0.00 3.67
45 46 3.714798 GGGTGATTAGAGGGACATTGGTA 59.285 47.826 0.00 0.00 0.00 3.25
46 47 4.351111 GGGTGATTAGAGGGACATTGGTAT 59.649 45.833 0.00 0.00 0.00 2.73
47 48 5.513267 GGGTGATTAGAGGGACATTGGTATC 60.513 48.000 0.00 0.00 0.00 2.24
48 49 5.308237 GGTGATTAGAGGGACATTGGTATCT 59.692 44.000 0.00 0.00 0.00 1.98
49 50 6.459923 GTGATTAGAGGGACATTGGTATCTC 58.540 44.000 0.00 0.00 0.00 2.75
50 51 5.544176 TGATTAGAGGGACATTGGTATCTCC 59.456 44.000 0.00 0.00 30.75 3.71
51 52 3.421394 AGAGGGACATTGGTATCTCCA 57.579 47.619 0.00 0.00 45.60 3.86
55 56 3.477210 GGACATTGGTATCTCCAGTCC 57.523 52.381 8.72 8.72 46.78 3.85
59 60 3.709834 TGGTATCTCCAGTCCAGCA 57.290 52.632 0.00 0.00 41.93 4.41
60 61 1.489481 TGGTATCTCCAGTCCAGCAG 58.511 55.000 0.00 0.00 41.93 4.24
61 62 0.755686 GGTATCTCCAGTCCAGCAGG 59.244 60.000 0.00 0.00 35.97 4.85
62 63 0.755686 GTATCTCCAGTCCAGCAGGG 59.244 60.000 0.00 0.00 34.83 4.45
63 64 0.339859 TATCTCCAGTCCAGCAGGGT 59.660 55.000 0.00 0.00 38.11 4.34
64 65 0.548682 ATCTCCAGTCCAGCAGGGTT 60.549 55.000 0.00 0.00 38.11 4.11
65 66 1.194781 TCTCCAGTCCAGCAGGGTTC 61.195 60.000 0.00 0.00 38.11 3.62
66 67 1.461268 TCCAGTCCAGCAGGGTTCA 60.461 57.895 0.00 0.00 38.11 3.18
67 68 1.059584 TCCAGTCCAGCAGGGTTCAA 61.060 55.000 0.00 0.00 38.11 2.69
68 69 0.607489 CCAGTCCAGCAGGGTTCAAG 60.607 60.000 0.00 0.00 38.11 3.02
69 70 0.109342 CAGTCCAGCAGGGTTCAAGT 59.891 55.000 0.00 0.00 38.11 3.16
70 71 0.398318 AGTCCAGCAGGGTTCAAGTC 59.602 55.000 0.00 0.00 38.11 3.01
71 72 0.606673 GTCCAGCAGGGTTCAAGTCC 60.607 60.000 0.00 0.00 38.11 3.85
72 73 0.768221 TCCAGCAGGGTTCAAGTCCT 60.768 55.000 0.00 0.00 38.11 3.85
77 78 2.348411 CAGGGTTCAAGTCCTGTTGT 57.652 50.000 0.00 0.00 44.03 3.32
78 79 2.654863 CAGGGTTCAAGTCCTGTTGTT 58.345 47.619 0.00 0.00 44.03 2.83
79 80 3.023832 CAGGGTTCAAGTCCTGTTGTTT 58.976 45.455 0.00 0.00 44.03 2.83
80 81 3.023832 AGGGTTCAAGTCCTGTTGTTTG 58.976 45.455 0.00 0.00 31.11 2.93
81 82 2.481276 GGGTTCAAGTCCTGTTGTTTGC 60.481 50.000 0.00 0.00 0.00 3.68
82 83 2.165437 GGTTCAAGTCCTGTTGTTTGCA 59.835 45.455 0.00 0.00 0.00 4.08
83 84 3.181476 GGTTCAAGTCCTGTTGTTTGCAT 60.181 43.478 0.00 0.00 0.00 3.96
84 85 4.432712 GTTCAAGTCCTGTTGTTTGCATT 58.567 39.130 0.00 0.00 0.00 3.56
85 86 4.044336 TCAAGTCCTGTTGTTTGCATTG 57.956 40.909 0.00 0.00 0.00 2.82
86 87 3.446873 TCAAGTCCTGTTGTTTGCATTGT 59.553 39.130 0.00 0.00 0.00 2.71
87 88 4.081752 TCAAGTCCTGTTGTTTGCATTGTT 60.082 37.500 0.00 0.00 0.00 2.83
88 89 4.470334 AGTCCTGTTGTTTGCATTGTTT 57.530 36.364 0.00 0.00 0.00 2.83
89 90 4.432712 AGTCCTGTTGTTTGCATTGTTTC 58.567 39.130 0.00 0.00 0.00 2.78
90 91 4.160252 AGTCCTGTTGTTTGCATTGTTTCT 59.840 37.500 0.00 0.00 0.00 2.52
91 92 4.268405 GTCCTGTTGTTTGCATTGTTTCTG 59.732 41.667 0.00 0.00 0.00 3.02
92 93 3.556775 CCTGTTGTTTGCATTGTTTCTGG 59.443 43.478 0.00 0.00 0.00 3.86
93 94 4.431809 CTGTTGTTTGCATTGTTTCTGGA 58.568 39.130 0.00 0.00 0.00 3.86
94 95 5.021033 TGTTGTTTGCATTGTTTCTGGAT 57.979 34.783 0.00 0.00 0.00 3.41
95 96 5.426504 TGTTGTTTGCATTGTTTCTGGATT 58.573 33.333 0.00 0.00 0.00 3.01
96 97 5.879223 TGTTGTTTGCATTGTTTCTGGATTT 59.121 32.000 0.00 0.00 0.00 2.17
97 98 7.044181 TGTTGTTTGCATTGTTTCTGGATTTA 58.956 30.769 0.00 0.00 0.00 1.40
98 99 7.714377 TGTTGTTTGCATTGTTTCTGGATTTAT 59.286 29.630 0.00 0.00 0.00 1.40
99 100 8.558700 GTTGTTTGCATTGTTTCTGGATTTATT 58.441 29.630 0.00 0.00 0.00 1.40
100 101 8.674263 TGTTTGCATTGTTTCTGGATTTATTT 57.326 26.923 0.00 0.00 0.00 1.40
101 102 8.772705 TGTTTGCATTGTTTCTGGATTTATTTC 58.227 29.630 0.00 0.00 0.00 2.17
102 103 8.772705 GTTTGCATTGTTTCTGGATTTATTTCA 58.227 29.630 0.00 0.00 0.00 2.69
103 104 8.537049 TTGCATTGTTTCTGGATTTATTTCAG 57.463 30.769 0.00 0.00 0.00 3.02
104 105 7.098477 TGCATTGTTTCTGGATTTATTTCAGG 58.902 34.615 0.00 0.00 0.00 3.86
105 106 7.039152 TGCATTGTTTCTGGATTTATTTCAGGA 60.039 33.333 0.00 0.00 0.00 3.86
106 107 7.983484 GCATTGTTTCTGGATTTATTTCAGGAT 59.017 33.333 0.00 0.00 0.00 3.24
107 108 9.880157 CATTGTTTCTGGATTTATTTCAGGATT 57.120 29.630 0.00 0.00 0.00 3.01
109 110 9.927668 TTGTTTCTGGATTTATTTCAGGATTTC 57.072 29.630 0.00 0.00 0.00 2.17
110 111 9.312904 TGTTTCTGGATTTATTTCAGGATTTCT 57.687 29.630 0.00 0.00 0.00 2.52
111 112 9.578439 GTTTCTGGATTTATTTCAGGATTTCTG 57.422 33.333 0.00 0.00 44.68 3.02
126 127 1.070821 TTCTGACGATGCGCTTTCAG 58.929 50.000 9.73 13.38 37.43 3.02
129 130 1.291184 TGACGATGCGCTTTCAGTGG 61.291 55.000 9.73 0.00 0.00 4.00
141 142 1.420430 TTCAGTGGGAGGAGACGTTT 58.580 50.000 0.00 0.00 0.00 3.60
191 192 8.963130 GTGACTTCGTAAATCTCAAGATGATAG 58.037 37.037 0.00 0.00 34.49 2.08
193 194 6.926272 ACTTCGTAAATCTCAAGATGATAGGC 59.074 38.462 0.00 0.00 34.49 3.93
195 196 5.304357 TCGTAAATCTCAAGATGATAGGCCA 59.696 40.000 5.01 0.00 34.49 5.36
196 197 5.991606 CGTAAATCTCAAGATGATAGGCCAA 59.008 40.000 5.01 0.00 34.49 4.52
221 222 2.948979 AGTCTCTCGAAGGTGCTCATAG 59.051 50.000 0.00 0.00 0.00 2.23
229 230 0.104934 AGGTGCTCATAGGGGTAGGG 60.105 60.000 0.00 0.00 0.00 3.53
230 231 1.755384 GTGCTCATAGGGGTAGGGC 59.245 63.158 0.00 0.00 0.00 5.19
231 232 1.054406 GTGCTCATAGGGGTAGGGCA 61.054 60.000 0.00 0.00 0.00 5.36
234 235 1.734655 CTCATAGGGGTAGGGCATGT 58.265 55.000 0.00 0.00 0.00 3.21
249 250 1.196581 GCATGTGTGTGTGCGTTCATA 59.803 47.619 0.00 0.00 0.00 2.15
252 253 0.796312 GTGTGTGTGCGTTCATAGGG 59.204 55.000 0.00 0.00 0.00 3.53
253 254 0.321210 TGTGTGTGCGTTCATAGGGG 60.321 55.000 0.00 0.00 0.00 4.79
254 255 0.321298 GTGTGTGCGTTCATAGGGGT 60.321 55.000 0.00 0.00 0.00 4.95
255 256 0.321210 TGTGTGCGTTCATAGGGGTG 60.321 55.000 0.00 0.00 0.00 4.61
256 257 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.000 0.00 0.00 0.00 4.02
257 258 0.036765 TGTGCGTTCATAGGGGTGAC 60.037 55.000 0.00 0.00 0.00 3.67
265 266 1.686587 TCATAGGGGTGACTGTATGCG 59.313 52.381 0.00 0.00 0.00 4.73
266 267 1.412710 CATAGGGGTGACTGTATGCGT 59.587 52.381 0.00 0.00 0.00 5.24
270 271 1.470979 GGGGTGACTGTATGCGTGTAG 60.471 57.143 0.00 0.00 0.00 2.74
271 272 1.475280 GGGTGACTGTATGCGTGTAGA 59.525 52.381 0.00 0.00 0.00 2.59
279 280 3.821841 TGTATGCGTGTAGATATGAGCG 58.178 45.455 0.00 0.00 0.00 5.03
280 281 3.252458 TGTATGCGTGTAGATATGAGCGT 59.748 43.478 0.00 0.00 0.00 5.07
282 283 2.727777 TGCGTGTAGATATGAGCGTTC 58.272 47.619 0.00 0.00 0.00 3.95
284 285 1.709203 CGTGTAGATATGAGCGTTCGC 59.291 52.381 9.24 9.24 0.00 4.70
285 286 2.602456 CGTGTAGATATGAGCGTTCGCT 60.602 50.000 19.46 19.46 45.02 4.93
299 300 3.302555 CGTTCGCTTCTGTACTGTGTTA 58.697 45.455 0.00 0.00 0.00 2.41
300 301 3.732219 CGTTCGCTTCTGTACTGTGTTAA 59.268 43.478 0.00 0.00 0.00 2.01
307 308 6.846283 CGCTTCTGTACTGTGTTAAGAAAAAG 59.154 38.462 0.00 0.00 0.00 2.27
317 318 9.561069 ACTGTGTTAAGAAAAAGAGTCATATGT 57.439 29.630 1.90 0.00 0.00 2.29
370 371 7.449934 CAATAGTTGGACTTTTGTTGTCAAC 57.550 36.000 8.86 8.86 37.85 3.18
418 419 0.530870 GGCTGGAGACGTTGATAGGC 60.531 60.000 0.00 0.00 0.00 3.93
421 422 1.751351 CTGGAGACGTTGATAGGCAGA 59.249 52.381 0.00 0.00 0.00 4.26
423 424 2.565391 TGGAGACGTTGATAGGCAGAAA 59.435 45.455 0.00 0.00 0.00 2.52
424 425 3.197766 TGGAGACGTTGATAGGCAGAAAT 59.802 43.478 0.00 0.00 0.00 2.17
425 426 3.804873 GGAGACGTTGATAGGCAGAAATC 59.195 47.826 0.00 0.00 0.00 2.17
428 429 5.245531 AGACGTTGATAGGCAGAAATCAAA 58.754 37.500 0.00 0.00 42.18 2.69
430 431 4.396166 ACGTTGATAGGCAGAAATCAAAGG 59.604 41.667 13.04 6.10 42.18 3.11
431 432 4.635765 CGTTGATAGGCAGAAATCAAAGGA 59.364 41.667 0.00 0.00 42.18 3.36
506 507 2.427245 CCCGAGGATCACTTCGCCT 61.427 63.158 7.69 0.00 42.76 5.52
520 521 6.533730 TCACTTCGCCTATCCATTGATAAAT 58.466 36.000 0.00 0.00 33.13 1.40
529 530 7.465116 CCTATCCATTGATAAATTGTCCTCCT 58.535 38.462 0.00 0.00 33.13 3.69
532 533 6.730447 TCCATTGATAAATTGTCCTCCTTGA 58.270 36.000 0.00 0.00 0.00 3.02
603 611 6.533367 TCTTGCGTATTTTAATTTTGGGATGC 59.467 34.615 0.00 0.00 0.00 3.91
606 614 6.650807 TGCGTATTTTAATTTTGGGATGCAAA 59.349 30.769 0.00 0.00 0.00 3.68
684 702 4.566759 TGCTATTCTCAAATCGACTTTCGG 59.433 41.667 0.00 0.00 40.88 4.30
828 855 2.730672 CGTGCGCAGTAGAACTGGC 61.731 63.158 12.22 10.33 46.01 4.85
881 1478 7.147143 CTAGATTTAGCCTAGCACGATTAGA 57.853 40.000 0.00 0.00 0.00 2.10
1059 1727 0.388659 AGAGGATGCTGCTCGATGAC 59.611 55.000 0.00 0.00 40.01 3.06
1110 1778 3.499918 CACTTTTGGAGGACATCACAGAC 59.500 47.826 0.00 0.00 0.00 3.51
1118 1786 2.028930 AGGACATCACAGACCGTTTCTC 60.029 50.000 0.00 0.00 28.96 2.87
1224 1892 5.065988 GCCTCTCAAAACTAATAATCGGCAA 59.934 40.000 0.00 0.00 33.14 4.52
1243 1911 8.025243 TCGGCAAAATCTAAAAACTACAGTAG 57.975 34.615 6.00 6.00 0.00 2.57
1313 1981 3.005261 ACATGACAGATATCAGCCGAGTC 59.995 47.826 5.32 3.98 30.46 3.36
1489 2165 7.978982 ACTGTTCATAAAACTCTGACATATGC 58.021 34.615 1.58 0.00 0.00 3.14
1527 2210 3.476552 CCTATGAGGAAGCGCCAAATTA 58.523 45.455 2.29 0.00 37.67 1.40
1582 2266 8.414003 TGTACTTCAGATTATTGCTACGATCTT 58.586 33.333 0.00 0.00 0.00 2.40
1601 2368 7.081349 CGATCTTGGCAACTTGTTAATTAACA 58.919 34.615 23.91 23.91 43.80 2.41
1646 2415 8.792633 TGGATAGTCTTTTGTCTTGTTAAATGG 58.207 33.333 0.00 0.00 0.00 3.16
1653 2422 8.194769 TCTTTTGTCTTGTTAAATGGAAACTCC 58.805 33.333 0.00 0.00 36.96 3.85
1662 2431 9.594478 TTGTTAAATGGAAACTCCTTTCTTTTC 57.406 29.630 0.00 0.00 37.46 2.29
1665 2434 9.594478 TTAAATGGAAACTCCTTTCTTTTCAAC 57.406 29.630 0.00 0.00 37.46 3.18
1672 2441 6.944234 ACTCCTTTCTTTTCAACGAATTCT 57.056 33.333 3.52 0.00 0.00 2.40
1705 2474 8.731275 AAACTATATATGCAAGCTACAACACA 57.269 30.769 0.00 0.00 0.00 3.72
1706 2475 7.715265 ACTATATATGCAAGCTACAACACAC 57.285 36.000 0.00 0.00 0.00 3.82
1751 2521 5.997746 AGGATATTGACAATATGGTTCACGG 59.002 40.000 22.50 0.00 34.31 4.94
2020 2790 5.853936 TGATAAGCATATGTCTGGTACCAC 58.146 41.667 11.60 2.55 0.00 4.16
2108 2890 2.607187 CGGCTCTTTCGTGTACAGATT 58.393 47.619 0.00 0.00 0.00 2.40
2173 2955 3.507622 GGGGAATATGTGAAGGCTTATGC 59.492 47.826 0.00 0.00 38.76 3.14
2410 3192 6.397272 TGGGCATTCATTGATCAAACTTTAC 58.603 36.000 13.09 1.48 0.00 2.01
2462 3244 8.589338 GCTCCAGAATTCTATAGAGGACAAATA 58.411 37.037 21.67 0.76 0.00 1.40
2513 3295 9.784531 CTTGGTGTTATAATCATGGAGATACTT 57.215 33.333 0.00 0.00 35.39 2.24
2554 3336 7.765695 ATTTTGAAGAGGAGCATGTAAGAAA 57.234 32.000 0.00 0.00 0.00 2.52
2556 3338 7.765695 TTTGAAGAGGAGCATGTAAGAAAAT 57.234 32.000 0.00 0.00 0.00 1.82
2663 3600 3.885297 CTCCACCAACAGAACAATCAAGT 59.115 43.478 0.00 0.00 0.00 3.16
2754 3693 2.170817 GGAGAAACTAGGCAAGGTAGGG 59.829 54.545 0.00 0.00 0.00 3.53
2759 3698 1.553704 ACTAGGCAAGGTAGGGAAACG 59.446 52.381 0.00 0.00 0.00 3.60
2808 3747 5.545658 TCTGAAGAACAACACTCAACAAC 57.454 39.130 0.00 0.00 0.00 3.32
2906 3848 8.730427 CGTTCGTCAATTTATATGTTAAAAGGC 58.270 33.333 0.00 0.00 0.00 4.35
2909 3851 9.781834 TCGTCAATTTATATGTTAAAAGGCTTG 57.218 29.630 0.00 0.00 0.00 4.01
3011 3961 7.881775 AAATAGAACCATTAAAGTAGGCCTG 57.118 36.000 17.99 0.00 0.00 4.85
3068 4018 0.758734 TCCCCATGGATTCTAGCACG 59.241 55.000 15.22 0.00 35.03 5.34
3071 4021 2.567169 CCCCATGGATTCTAGCACGATA 59.433 50.000 15.22 0.00 0.00 2.92
3089 4039 4.034858 ACGATATTCAAGCTCATGTGCAAG 59.965 41.667 20.92 12.68 34.99 4.01
3161 4112 7.725818 TCAGAATTATCTAGAATTGCTGCTG 57.274 36.000 0.00 0.00 33.50 4.41
3396 4348 7.332003 TGCTTTTTGTGATGTTATTTAAGCG 57.668 32.000 0.00 0.00 38.55 4.68
3472 4424 9.967346 GTAGATAGTAACTCATGATTGCAACTA 57.033 33.333 0.00 0.00 0.00 2.24
3526 4478 3.699894 AGGCACCAGAGAGGCACG 61.700 66.667 0.00 0.00 43.14 5.34
3684 4636 1.406614 GGCATGAGCAGTTCACTAGCT 60.407 52.381 0.00 0.00 44.61 3.32
3711 4663 2.611518 CAGCCAAGTTTACTCGAGGAG 58.388 52.381 18.41 0.00 35.52 3.69
3780 4735 1.974265 TCAATGAACGCCCAGAAACA 58.026 45.000 0.00 0.00 0.00 2.83
3822 4777 4.164294 GTCAAGAAAATGCAGATCAGTGC 58.836 43.478 0.00 0.00 44.27 4.40
3830 4785 3.615224 TGCAGATCAGTGCTCATTACA 57.385 42.857 8.27 0.00 44.32 2.41
3852 4807 0.460284 AAGCACAAGATACGGAGCGG 60.460 55.000 0.00 0.00 0.00 5.52
3859 4814 0.460311 AGATACGGAGCGGAAGGTTG 59.540 55.000 0.00 0.00 45.11 3.77
3874 4829 0.602905 GGTTGACCGACCAGGAACAG 60.603 60.000 0.00 0.00 45.00 3.16
3966 4921 3.699067 CAGGAATTTCGTGATGAATGGC 58.301 45.455 12.62 0.00 36.22 4.40
3983 4938 1.446272 GCGGCTCACACCTACAGAC 60.446 63.158 0.00 0.00 0.00 3.51
4115 5070 0.657840 GACAATACGATGGTGGCAGC 59.342 55.000 10.30 10.30 0.00 5.25
4397 5355 2.297701 CTACGCAAATTACCCCATGCT 58.702 47.619 0.00 0.00 36.67 3.79
4418 5376 1.833630 ACATGGTGATGTCAGACCGAT 59.166 47.619 0.00 0.00 38.53 4.18
4528 5486 2.943690 CAGGCCTCTGAATCAAGTGATG 59.056 50.000 0.00 0.00 43.49 3.07
4575 5533 2.953284 TGGGTTACATGGACCGAAAA 57.047 45.000 12.65 0.00 38.08 2.29
4594 5552 5.808540 CGAAAATTCATGCAAGATGGACATT 59.191 36.000 0.00 0.00 0.00 2.71
4607 5565 8.296713 GCAAGATGGACATTTAACACTAAAGAA 58.703 33.333 0.00 0.00 30.59 2.52
4641 5599 4.991472 GCTTTGGAGCTATTCTTTTGGAG 58.009 43.478 0.00 0.00 45.65 3.86
4686 5644 4.806640 ATTTGATGAAAACCGCATCCTT 57.193 36.364 0.00 0.00 41.05 3.36
4891 5849 0.468029 CAGGAGAGAGAGGAGGCTCC 60.468 65.000 26.42 26.42 45.70 4.70
4948 5906 2.050144 CATCTGTATAGTGGGTGGCCT 58.950 52.381 3.32 0.00 0.00 5.19
5065 6028 9.329913 CGTCACAAACATAAAAGGAGAATTTAG 57.670 33.333 0.00 0.00 0.00 1.85
5107 6071 2.426305 AAAGAGGCTGAAACCCCCGG 62.426 60.000 0.00 0.00 0.00 5.73
5108 6072 4.426313 GAGGCTGAAACCCCCGGG 62.426 72.222 15.80 15.80 42.03 5.73
5169 6133 6.096001 AGGGATGAACTTGAGATGTTATTTGC 59.904 38.462 0.00 0.00 0.00 3.68
5216 6180 7.013655 GGATAACCAATGAGCATTAGACATTGT 59.986 37.037 0.81 0.00 45.02 2.71
5284 6262 0.107165 GGATACCCTGGGCACTCAAC 60.107 60.000 14.08 0.00 0.00 3.18
5324 6302 0.179111 CTCGCCGGCATCTGTCTTTA 60.179 55.000 28.98 0.00 0.00 1.85
5330 6308 3.797039 CCGGCATCTGTCTTTATTCTGA 58.203 45.455 0.00 0.00 0.00 3.27
5331 6309 4.191544 CCGGCATCTGTCTTTATTCTGAA 58.808 43.478 0.00 0.00 0.00 3.02
5332 6310 4.635765 CCGGCATCTGTCTTTATTCTGAAA 59.364 41.667 0.00 0.00 0.00 2.69
5333 6311 5.123820 CCGGCATCTGTCTTTATTCTGAAAA 59.876 40.000 0.00 0.00 0.00 2.29
5334 6312 6.253746 CGGCATCTGTCTTTATTCTGAAAAG 58.746 40.000 0.00 0.00 35.66 2.27
5335 6313 6.128172 CGGCATCTGTCTTTATTCTGAAAAGT 60.128 38.462 0.00 0.00 35.79 2.66
5336 6314 7.025963 GGCATCTGTCTTTATTCTGAAAAGTG 58.974 38.462 0.00 0.00 35.79 3.16
5337 6315 7.094634 GGCATCTGTCTTTATTCTGAAAAGTGA 60.095 37.037 0.00 0.00 35.79 3.41
5465 6443 1.613836 ATCGTACCACCCGGATCTAC 58.386 55.000 0.73 0.00 35.59 2.59
5522 6501 3.217626 AGAAATTCCATGCTCGGATTCC 58.782 45.455 0.00 0.00 34.19 3.01
5527 6506 1.134098 TCCATGCTCGGATTCCTTTCC 60.134 52.381 0.30 0.00 0.00 3.13
5528 6507 1.133976 CCATGCTCGGATTCCTTTCCT 60.134 52.381 0.30 0.00 33.30 3.36
5567 6546 0.392461 TGCTCTGAATAACACGGGCC 60.392 55.000 0.00 0.00 0.00 5.80
5568 6547 0.107654 GCTCTGAATAACACGGGCCT 60.108 55.000 0.84 0.00 0.00 5.19
5572 6551 2.238646 TCTGAATAACACGGGCCTGAAT 59.761 45.455 21.41 6.15 0.00 2.57
5573 6552 3.452990 TCTGAATAACACGGGCCTGAATA 59.547 43.478 21.41 8.38 0.00 1.75
5574 6553 4.080807 TCTGAATAACACGGGCCTGAATAA 60.081 41.667 21.41 0.73 0.00 1.40
5581 6560 0.107214 CGGGCCTGAATAAAGGAGCA 60.107 55.000 5.28 0.00 40.02 4.26
5582 6561 1.393603 GGGCCTGAATAAAGGAGCAC 58.606 55.000 0.84 0.00 40.02 4.40
5585 6564 1.679032 GCCTGAATAAAGGAGCACGGT 60.679 52.381 0.00 0.00 40.02 4.83
5591 6570 5.116180 TGAATAAAGGAGCACGGTCAATAG 58.884 41.667 0.00 0.00 0.00 1.73
5596 6575 1.009829 GAGCACGGTCAATAGGCAAG 58.990 55.000 0.00 0.00 0.00 4.01
5598 6577 1.210478 AGCACGGTCAATAGGCAAGAT 59.790 47.619 0.00 0.00 0.00 2.40
5612 6591 3.831911 AGGCAAGATTTCGGGAATTTCAA 59.168 39.130 0.00 0.00 0.00 2.69
5614 6593 4.994217 GGCAAGATTTCGGGAATTTCAAAA 59.006 37.500 0.00 0.00 0.00 2.44
5618 6597 7.095271 GCAAGATTTCGGGAATTTCAAAAATCA 60.095 33.333 18.25 0.00 36.21 2.57
5625 6604 7.441017 TCGGGAATTTCAAAAATCATTTCAGT 58.559 30.769 0.00 0.00 0.00 3.41
5651 6640 8.879342 TTTTTCAGAATCCGCTTAATTTTGAA 57.121 26.923 5.16 5.16 36.20 2.69
5683 6672 9.762062 ATGTTTTTGTTTGGAATTCGTTTTTAC 57.238 25.926 0.00 0.00 0.00 2.01
5690 6679 3.892588 TGGAATTCGTTTTTACCTGGCTT 59.107 39.130 0.00 0.00 0.00 4.35
5695 6684 4.985538 TCGTTTTTACCTGGCTTGAAAA 57.014 36.364 0.00 0.00 0.00 2.29
5697 6686 5.908341 TCGTTTTTACCTGGCTTGAAAATT 58.092 33.333 0.00 0.00 0.00 1.82
5713 6702 9.062524 GCTTGAAAATTTGGGGTTTAAAGTATT 57.937 29.630 0.00 0.00 0.00 1.89
5721 6710 7.764141 TTGGGGTTTAAAGTATTTCAGTACC 57.236 36.000 0.00 0.00 40.09 3.34
5722 6711 6.247676 TGGGGTTTAAAGTATTTCAGTACCC 58.752 40.000 0.00 0.00 40.54 3.69
5724 6713 6.151648 GGGGTTTAAAGTATTTCAGTACCCAC 59.848 42.308 0.00 0.00 41.82 4.61
5725 6714 6.151648 GGGTTTAAAGTATTTCAGTACCCACC 59.848 42.308 0.00 0.00 40.75 4.61
5726 6715 6.128200 GGTTTAAAGTATTTCAGTACCCACCG 60.128 42.308 0.00 0.00 40.09 4.94
5727 6716 4.628963 AAAGTATTTCAGTACCCACCGT 57.371 40.909 0.00 0.00 27.08 4.83
5728 6717 5.743636 AAAGTATTTCAGTACCCACCGTA 57.256 39.130 0.00 0.00 27.08 4.02
5736 6725 6.488769 TTCAGTACCCACCGTAATAATCAT 57.511 37.500 0.00 0.00 0.00 2.45
5737 6726 6.488769 TCAGTACCCACCGTAATAATCATT 57.511 37.500 0.00 0.00 0.00 2.57
5738 6727 6.891388 TCAGTACCCACCGTAATAATCATTT 58.109 36.000 0.00 0.00 0.00 2.32
5739 6728 7.340256 TCAGTACCCACCGTAATAATCATTTT 58.660 34.615 0.00 0.00 0.00 1.82
5740 6729 7.830201 TCAGTACCCACCGTAATAATCATTTTT 59.170 33.333 0.00 0.00 0.00 1.94
5791 6780 7.066766 AGCTCATTAATCAGATGAACCTTGAAC 59.933 37.037 0.00 0.00 33.45 3.18
5799 6788 5.005740 CAGATGAACCTTGAACCTGATCAA 58.994 41.667 0.00 0.00 37.70 2.57
5800 6789 5.651139 CAGATGAACCTTGAACCTGATCAAT 59.349 40.000 0.00 0.00 38.55 2.57
5801 6790 6.825213 CAGATGAACCTTGAACCTGATCAATA 59.175 38.462 0.00 0.00 38.55 1.90
5802 6791 7.501559 CAGATGAACCTTGAACCTGATCAATAT 59.498 37.037 0.00 0.00 38.55 1.28
5803 6792 8.717717 AGATGAACCTTGAACCTGATCAATATA 58.282 33.333 0.00 0.00 38.55 0.86
5804 6793 9.512588 GATGAACCTTGAACCTGATCAATATAT 57.487 33.333 0.00 0.00 38.55 0.86
5815 6804 9.851686 AACCTGATCAATATATAAAAGACAGCA 57.148 29.630 0.00 0.00 0.00 4.41
5816 6805 9.499479 ACCTGATCAATATATAAAAGACAGCAG 57.501 33.333 0.00 0.00 0.00 4.24
5817 6806 9.499479 CCTGATCAATATATAAAAGACAGCAGT 57.501 33.333 0.00 0.00 0.00 4.40
5825 6814 7.906199 ATATAAAAGACAGCAGTAGTCTCCT 57.094 36.000 0.00 0.00 45.11 3.69
5826 6815 4.529109 AAAAGACAGCAGTAGTCTCCTC 57.471 45.455 0.00 0.00 45.11 3.71
5827 6816 3.449746 AAGACAGCAGTAGTCTCCTCT 57.550 47.619 0.00 0.00 45.11 3.69
5828 6817 4.577988 AAGACAGCAGTAGTCTCCTCTA 57.422 45.455 0.00 0.00 45.11 2.43
5829 6818 4.150897 AGACAGCAGTAGTCTCCTCTAG 57.849 50.000 0.00 0.00 42.40 2.43
5830 6819 2.616842 GACAGCAGTAGTCTCCTCTAGC 59.383 54.545 0.00 0.00 33.29 3.42
5831 6820 2.025793 ACAGCAGTAGTCTCCTCTAGCA 60.026 50.000 0.00 0.00 0.00 3.49
5832 6821 3.221771 CAGCAGTAGTCTCCTCTAGCAT 58.778 50.000 0.00 0.00 0.00 3.79
5833 6822 3.004629 CAGCAGTAGTCTCCTCTAGCATG 59.995 52.174 0.00 0.00 0.00 4.06
5834 6823 3.117701 AGCAGTAGTCTCCTCTAGCATGA 60.118 47.826 0.00 0.00 0.00 3.07
5835 6824 3.253188 GCAGTAGTCTCCTCTAGCATGAG 59.747 52.174 0.00 0.00 0.00 2.90
5836 6825 4.713553 CAGTAGTCTCCTCTAGCATGAGA 58.286 47.826 0.00 2.67 36.23 3.27
5837 6826 5.129634 CAGTAGTCTCCTCTAGCATGAGAA 58.870 45.833 0.00 0.00 36.93 2.87
5838 6827 5.592282 CAGTAGTCTCCTCTAGCATGAGAAA 59.408 44.000 0.00 0.00 36.93 2.52
5839 6828 6.096141 CAGTAGTCTCCTCTAGCATGAGAAAA 59.904 42.308 0.00 0.00 36.93 2.29
5840 6829 5.596836 AGTCTCCTCTAGCATGAGAAAAG 57.403 43.478 0.00 0.00 36.93 2.27
5841 6830 5.022787 AGTCTCCTCTAGCATGAGAAAAGT 58.977 41.667 0.00 0.00 36.93 2.66
5842 6831 5.483583 AGTCTCCTCTAGCATGAGAAAAGTT 59.516 40.000 0.00 0.00 36.93 2.66
5843 6832 6.013812 AGTCTCCTCTAGCATGAGAAAAGTTT 60.014 38.462 0.00 0.00 36.93 2.66
5844 6833 6.312672 GTCTCCTCTAGCATGAGAAAAGTTTC 59.687 42.308 0.00 0.00 36.93 2.78
5845 6834 6.014242 TCTCCTCTAGCATGAGAAAAGTTTCA 60.014 38.462 0.00 0.00 39.61 2.69
5846 6835 6.169094 TCCTCTAGCATGAGAAAAGTTTCAG 58.831 40.000 0.00 0.00 39.61 3.02
5847 6836 5.353678 CCTCTAGCATGAGAAAAGTTTCAGG 59.646 44.000 0.00 0.00 39.61 3.86
5848 6837 5.869579 TCTAGCATGAGAAAAGTTTCAGGT 58.130 37.500 0.00 2.26 39.61 4.00
5849 6838 6.299141 TCTAGCATGAGAAAAGTTTCAGGTT 58.701 36.000 0.00 0.00 39.61 3.50
5850 6839 5.859205 AGCATGAGAAAAGTTTCAGGTTT 57.141 34.783 0.00 0.00 39.61 3.27
5851 6840 6.225981 AGCATGAGAAAAGTTTCAGGTTTT 57.774 33.333 0.00 0.00 39.61 2.43
5852 6841 6.643388 AGCATGAGAAAAGTTTCAGGTTTTT 58.357 32.000 0.00 0.00 39.61 1.94
5896 6885 9.632969 CTATTTATTTCGATTTACTGTTCACCG 57.367 33.333 0.00 0.00 0.00 4.94
5897 6886 4.939509 ATTTCGATTTACTGTTCACCGG 57.060 40.909 0.00 0.00 0.00 5.28
5898 6887 3.389925 TTCGATTTACTGTTCACCGGT 57.610 42.857 0.00 0.00 36.38 5.28
5899 6888 4.517952 TTCGATTTACTGTTCACCGGTA 57.482 40.909 6.87 0.00 33.63 4.02
5900 6889 4.100707 TCGATTTACTGTTCACCGGTAG 57.899 45.455 6.87 2.99 36.30 3.18
5901 6890 3.758023 TCGATTTACTGTTCACCGGTAGA 59.242 43.478 6.87 4.45 36.30 2.59
5902 6891 4.400251 TCGATTTACTGTTCACCGGTAGAT 59.600 41.667 6.87 0.00 36.30 1.98
5903 6892 4.503007 CGATTTACTGTTCACCGGTAGATG 59.497 45.833 6.87 0.00 36.30 2.90
5904 6893 5.657474 GATTTACTGTTCACCGGTAGATGA 58.343 41.667 6.87 0.00 36.30 2.92
5905 6894 4.713824 TTACTGTTCACCGGTAGATGAG 57.286 45.455 6.87 8.68 36.30 2.90
5906 6895 1.204941 ACTGTTCACCGGTAGATGAGC 59.795 52.381 6.87 2.80 0.00 4.26
5907 6896 0.535335 TGTTCACCGGTAGATGAGCC 59.465 55.000 6.87 0.00 0.00 4.70
5908 6897 0.179081 GTTCACCGGTAGATGAGCCC 60.179 60.000 6.87 0.00 0.00 5.19
5909 6898 1.335132 TTCACCGGTAGATGAGCCCC 61.335 60.000 6.87 0.00 0.00 5.80
5910 6899 2.838225 ACCGGTAGATGAGCCCCG 60.838 66.667 4.49 0.00 40.12 5.73
5912 6901 3.616721 CGGTAGATGAGCCCCGGG 61.617 72.222 15.80 15.80 36.84 5.73
5923 6912 3.646715 CCCCGGGCTCCAGTTGAA 61.647 66.667 17.73 0.00 0.00 2.69
5924 6913 2.677228 CCCGGGCTCCAGTTGAAT 59.323 61.111 8.08 0.00 0.00 2.57
5925 6914 1.000896 CCCGGGCTCCAGTTGAATT 60.001 57.895 8.08 0.00 0.00 2.17
5926 6915 0.254747 CCCGGGCTCCAGTTGAATTA 59.745 55.000 8.08 0.00 0.00 1.40
5927 6916 1.133792 CCCGGGCTCCAGTTGAATTAT 60.134 52.381 8.08 0.00 0.00 1.28
5928 6917 2.222027 CCGGGCTCCAGTTGAATTATC 58.778 52.381 0.00 0.00 0.00 1.75
5929 6918 1.867233 CGGGCTCCAGTTGAATTATCG 59.133 52.381 0.00 0.00 0.00 2.92
5930 6919 1.604278 GGGCTCCAGTTGAATTATCGC 59.396 52.381 0.00 0.00 0.00 4.58
5931 6920 1.604278 GGCTCCAGTTGAATTATCGCC 59.396 52.381 0.00 0.00 0.00 5.54
5932 6921 2.565841 GCTCCAGTTGAATTATCGCCT 58.434 47.619 0.00 0.00 0.00 5.52
5933 6922 2.545946 GCTCCAGTTGAATTATCGCCTC 59.454 50.000 0.00 0.00 0.00 4.70
5934 6923 3.134458 CTCCAGTTGAATTATCGCCTCC 58.866 50.000 0.00 0.00 0.00 4.30
5935 6924 1.867233 CCAGTTGAATTATCGCCTCCG 59.133 52.381 0.00 0.00 0.00 4.63
5936 6925 2.550978 CAGTTGAATTATCGCCTCCGT 58.449 47.619 0.00 0.00 35.54 4.69
5937 6926 2.285220 CAGTTGAATTATCGCCTCCGTG 59.715 50.000 0.00 0.00 35.54 4.94
5938 6927 2.093658 AGTTGAATTATCGCCTCCGTGT 60.094 45.455 0.00 0.00 35.54 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.225091 ACCACAGGAAAATGATGCTGGA 60.225 45.455 4.85 0.00 42.45 3.86
1 2 2.173519 ACCACAGGAAAATGATGCTGG 58.826 47.619 4.85 0.00 42.45 4.85
2 3 3.581755 CAACCACAGGAAAATGATGCTG 58.418 45.455 0.00 0.00 43.62 4.41
3 4 2.564062 CCAACCACAGGAAAATGATGCT 59.436 45.455 0.00 0.00 0.00 3.79
4 5 2.354003 CCCAACCACAGGAAAATGATGC 60.354 50.000 0.00 0.00 0.00 3.91
5 6 2.899256 ACCCAACCACAGGAAAATGATG 59.101 45.455 0.00 0.00 0.00 3.07
6 7 2.899256 CACCCAACCACAGGAAAATGAT 59.101 45.455 0.00 0.00 0.00 2.45
7 8 2.091610 TCACCCAACCACAGGAAAATGA 60.092 45.455 0.00 0.00 0.00 2.57
8 9 2.315176 TCACCCAACCACAGGAAAATG 58.685 47.619 0.00 0.00 0.00 2.32
9 10 2.765689 TCACCCAACCACAGGAAAAT 57.234 45.000 0.00 0.00 0.00 1.82
10 11 2.765689 ATCACCCAACCACAGGAAAA 57.234 45.000 0.00 0.00 0.00 2.29
11 12 2.765689 AATCACCCAACCACAGGAAA 57.234 45.000 0.00 0.00 0.00 3.13
12 13 2.983192 TCTAATCACCCAACCACAGGAA 59.017 45.455 0.00 0.00 0.00 3.36
13 14 2.571653 CTCTAATCACCCAACCACAGGA 59.428 50.000 0.00 0.00 0.00 3.86
14 15 2.356125 CCTCTAATCACCCAACCACAGG 60.356 54.545 0.00 0.00 0.00 4.00
15 16 2.356125 CCCTCTAATCACCCAACCACAG 60.356 54.545 0.00 0.00 0.00 3.66
16 17 1.633432 CCCTCTAATCACCCAACCACA 59.367 52.381 0.00 0.00 0.00 4.17
17 18 1.913419 TCCCTCTAATCACCCAACCAC 59.087 52.381 0.00 0.00 0.00 4.16
18 19 1.913419 GTCCCTCTAATCACCCAACCA 59.087 52.381 0.00 0.00 0.00 3.67
19 20 1.913419 TGTCCCTCTAATCACCCAACC 59.087 52.381 0.00 0.00 0.00 3.77
20 21 3.933861 ATGTCCCTCTAATCACCCAAC 57.066 47.619 0.00 0.00 0.00 3.77
21 22 3.053693 CCAATGTCCCTCTAATCACCCAA 60.054 47.826 0.00 0.00 0.00 4.12
22 23 2.509548 CCAATGTCCCTCTAATCACCCA 59.490 50.000 0.00 0.00 0.00 4.51
23 24 2.509964 ACCAATGTCCCTCTAATCACCC 59.490 50.000 0.00 0.00 0.00 4.61
24 25 3.933861 ACCAATGTCCCTCTAATCACC 57.066 47.619 0.00 0.00 0.00 4.02
25 26 6.426646 AGATACCAATGTCCCTCTAATCAC 57.573 41.667 0.00 0.00 0.00 3.06
26 27 5.544176 GGAGATACCAATGTCCCTCTAATCA 59.456 44.000 0.00 0.00 39.21 2.57
27 28 5.544176 TGGAGATACCAATGTCCCTCTAATC 59.456 44.000 0.00 0.00 46.75 1.75
28 29 5.476983 TGGAGATACCAATGTCCCTCTAAT 58.523 41.667 0.00 0.00 46.75 1.73
29 30 4.890988 TGGAGATACCAATGTCCCTCTAA 58.109 43.478 0.00 0.00 46.75 2.10
30 31 4.552883 TGGAGATACCAATGTCCCTCTA 57.447 45.455 0.00 0.00 46.75 2.43
31 32 3.421394 TGGAGATACCAATGTCCCTCT 57.579 47.619 0.00 0.00 46.75 3.69
38 39 6.788186 CCTGCTGGACTGGAGATACCAATG 62.788 54.167 2.92 0.00 41.40 2.82
39 40 4.771760 CCTGCTGGACTGGAGATACCAAT 61.772 52.174 2.92 0.00 41.40 3.16
40 41 3.484145 CCTGCTGGACTGGAGATACCAA 61.484 54.545 2.92 0.00 41.40 3.67
41 42 1.966784 CCTGCTGGACTGGAGATACCA 60.967 57.143 2.92 0.00 40.32 3.25
42 43 0.755686 CCTGCTGGACTGGAGATACC 59.244 60.000 2.92 0.00 39.72 2.73
43 44 0.755686 CCCTGCTGGACTGGAGATAC 59.244 60.000 11.88 0.00 39.72 2.24
44 45 0.339859 ACCCTGCTGGACTGGAGATA 59.660 55.000 11.88 0.00 39.72 1.98
45 46 0.548682 AACCCTGCTGGACTGGAGAT 60.549 55.000 11.88 0.00 39.72 2.75
46 47 1.152030 AACCCTGCTGGACTGGAGA 60.152 57.895 11.88 0.00 39.72 3.71
47 48 1.298014 GAACCCTGCTGGACTGGAG 59.702 63.158 11.88 0.00 39.72 3.86
48 49 1.059584 TTGAACCCTGCTGGACTGGA 61.060 55.000 11.88 0.00 39.72 3.86
49 50 0.607489 CTTGAACCCTGCTGGACTGG 60.607 60.000 11.88 0.00 38.00 4.00
50 51 0.109342 ACTTGAACCCTGCTGGACTG 59.891 55.000 11.88 0.00 38.00 3.51
51 52 0.398318 GACTTGAACCCTGCTGGACT 59.602 55.000 11.88 0.00 38.00 3.85
52 53 0.606673 GGACTTGAACCCTGCTGGAC 60.607 60.000 11.88 3.10 38.00 4.02
53 54 0.768221 AGGACTTGAACCCTGCTGGA 60.768 55.000 11.88 0.00 38.00 3.86
54 55 0.607489 CAGGACTTGAACCCTGCTGG 60.607 60.000 1.89 1.89 42.84 4.85
55 56 2.938354 CAGGACTTGAACCCTGCTG 58.062 57.895 0.00 0.00 42.84 4.41
59 60 3.023832 CAAACAACAGGACTTGAACCCT 58.976 45.455 0.00 0.00 0.00 4.34
60 61 2.481276 GCAAACAACAGGACTTGAACCC 60.481 50.000 0.00 0.00 0.00 4.11
61 62 2.165437 TGCAAACAACAGGACTTGAACC 59.835 45.455 0.00 0.00 0.00 3.62
62 63 3.502191 TGCAAACAACAGGACTTGAAC 57.498 42.857 0.00 0.00 0.00 3.18
63 64 4.081752 ACAATGCAAACAACAGGACTTGAA 60.082 37.500 0.00 0.00 0.00 2.69
64 65 3.446873 ACAATGCAAACAACAGGACTTGA 59.553 39.130 0.00 0.00 0.00 3.02
65 66 3.784338 ACAATGCAAACAACAGGACTTG 58.216 40.909 0.00 0.00 0.00 3.16
66 67 4.470334 AACAATGCAAACAACAGGACTT 57.530 36.364 0.00 0.00 0.00 3.01
67 68 4.160252 AGAAACAATGCAAACAACAGGACT 59.840 37.500 0.00 0.00 0.00 3.85
68 69 4.268405 CAGAAACAATGCAAACAACAGGAC 59.732 41.667 0.00 0.00 0.00 3.85
69 70 4.431809 CAGAAACAATGCAAACAACAGGA 58.568 39.130 0.00 0.00 0.00 3.86
70 71 3.556775 CCAGAAACAATGCAAACAACAGG 59.443 43.478 0.00 0.00 0.00 4.00
71 72 4.431809 TCCAGAAACAATGCAAACAACAG 58.568 39.130 0.00 0.00 0.00 3.16
72 73 4.462508 TCCAGAAACAATGCAAACAACA 57.537 36.364 0.00 0.00 0.00 3.33
73 74 5.989551 AATCCAGAAACAATGCAAACAAC 57.010 34.783 0.00 0.00 0.00 3.32
74 75 8.674263 AATAAATCCAGAAACAATGCAAACAA 57.326 26.923 0.00 0.00 0.00 2.83
75 76 8.674263 AAATAAATCCAGAAACAATGCAAACA 57.326 26.923 0.00 0.00 0.00 2.83
76 77 8.772705 TGAAATAAATCCAGAAACAATGCAAAC 58.227 29.630 0.00 0.00 0.00 2.93
77 78 8.899427 TGAAATAAATCCAGAAACAATGCAAA 57.101 26.923 0.00 0.00 0.00 3.68
78 79 7.603404 CCTGAAATAAATCCAGAAACAATGCAA 59.397 33.333 0.00 0.00 0.00 4.08
79 80 7.039152 TCCTGAAATAAATCCAGAAACAATGCA 60.039 33.333 0.00 0.00 0.00 3.96
80 81 7.322664 TCCTGAAATAAATCCAGAAACAATGC 58.677 34.615 0.00 0.00 0.00 3.56
81 82 9.880157 AATCCTGAAATAAATCCAGAAACAATG 57.120 29.630 0.00 0.00 0.00 2.82
83 84 9.927668 GAAATCCTGAAATAAATCCAGAAACAA 57.072 29.630 0.00 0.00 0.00 2.83
84 85 9.312904 AGAAATCCTGAAATAAATCCAGAAACA 57.687 29.630 0.00 0.00 0.00 2.83
85 86 9.578439 CAGAAATCCTGAAATAAATCCAGAAAC 57.422 33.333 0.00 0.00 45.78 2.78
101 102 0.302890 GCGCATCGTCAGAAATCCTG 59.697 55.000 0.30 0.00 44.27 3.86
102 103 0.176680 AGCGCATCGTCAGAAATCCT 59.823 50.000 11.47 0.00 0.00 3.24
103 104 1.009829 AAGCGCATCGTCAGAAATCC 58.990 50.000 11.47 0.00 0.00 3.01
104 105 2.094258 TGAAAGCGCATCGTCAGAAATC 59.906 45.455 11.47 0.00 0.00 2.17
105 106 2.076100 TGAAAGCGCATCGTCAGAAAT 58.924 42.857 11.47 0.00 0.00 2.17
106 107 1.460743 CTGAAAGCGCATCGTCAGAAA 59.539 47.619 19.01 0.00 39.94 2.52
107 108 1.070821 CTGAAAGCGCATCGTCAGAA 58.929 50.000 19.01 0.00 39.94 3.02
108 109 0.038251 ACTGAAAGCGCATCGTCAGA 60.038 50.000 26.23 4.07 39.94 3.27
109 110 0.094216 CACTGAAAGCGCATCGTCAG 59.906 55.000 20.96 20.96 42.60 3.51
110 111 1.291184 CCACTGAAAGCGCATCGTCA 61.291 55.000 11.47 6.16 37.60 4.35
111 112 1.421485 CCACTGAAAGCGCATCGTC 59.579 57.895 11.47 0.92 37.60 4.20
112 113 2.034879 CCCACTGAAAGCGCATCGT 61.035 57.895 11.47 7.45 37.60 3.73
191 192 0.603569 TTCGAGAGACTGAGTTGGCC 59.396 55.000 0.00 0.00 41.84 5.36
193 194 1.889829 ACCTTCGAGAGACTGAGTTGG 59.110 52.381 0.00 0.00 41.84 3.77
195 196 1.271102 GCACCTTCGAGAGACTGAGTT 59.729 52.381 0.00 0.00 41.84 3.01
196 197 0.885196 GCACCTTCGAGAGACTGAGT 59.115 55.000 0.00 0.00 41.84 3.41
221 222 1.378514 CACACACATGCCCTACCCC 60.379 63.158 0.00 0.00 0.00 4.95
229 230 0.040157 ATGAACGCACACACACATGC 60.040 50.000 0.00 0.00 38.52 4.06
230 231 2.159667 CCTATGAACGCACACACACATG 60.160 50.000 0.00 0.00 0.00 3.21
231 232 2.076100 CCTATGAACGCACACACACAT 58.924 47.619 0.00 0.00 0.00 3.21
234 235 0.321210 CCCCTATGAACGCACACACA 60.321 55.000 0.00 0.00 0.00 3.72
249 250 1.192146 ACACGCATACAGTCACCCCT 61.192 55.000 0.00 0.00 0.00 4.79
252 253 2.933495 TCTACACGCATACAGTCACC 57.067 50.000 0.00 0.00 0.00 4.02
253 254 5.758924 TCATATCTACACGCATACAGTCAC 58.241 41.667 0.00 0.00 0.00 3.67
254 255 5.562890 GCTCATATCTACACGCATACAGTCA 60.563 44.000 0.00 0.00 0.00 3.41
255 256 4.854291 GCTCATATCTACACGCATACAGTC 59.146 45.833 0.00 0.00 0.00 3.51
256 257 4.613850 CGCTCATATCTACACGCATACAGT 60.614 45.833 0.00 0.00 0.00 3.55
257 258 3.848582 CGCTCATATCTACACGCATACAG 59.151 47.826 0.00 0.00 0.00 2.74
279 280 4.980434 TCTTAACACAGTACAGAAGCGAAC 59.020 41.667 0.00 0.00 0.00 3.95
280 281 5.190992 TCTTAACACAGTACAGAAGCGAA 57.809 39.130 0.00 0.00 0.00 4.70
282 283 5.900339 TTTCTTAACACAGTACAGAAGCG 57.100 39.130 0.00 0.00 0.00 4.68
284 285 9.099454 ACTCTTTTTCTTAACACAGTACAGAAG 57.901 33.333 0.00 0.00 0.00 2.85
285 286 9.095065 GACTCTTTTTCTTAACACAGTACAGAA 57.905 33.333 0.00 0.00 0.00 3.02
323 324 4.262292 GGGGCCGTGACTCTTTTAATTTTT 60.262 41.667 0.00 0.00 0.00 1.94
324 325 3.257375 GGGGCCGTGACTCTTTTAATTTT 59.743 43.478 0.00 0.00 0.00 1.82
325 326 2.823747 GGGGCCGTGACTCTTTTAATTT 59.176 45.455 0.00 0.00 0.00 1.82
327 328 1.353022 TGGGGCCGTGACTCTTTTAAT 59.647 47.619 0.00 0.00 0.00 1.40
330 331 0.112412 ATTGGGGCCGTGACTCTTTT 59.888 50.000 0.00 0.00 0.00 2.27
385 386 1.352017 TCCAGCCAATCACACATGTCT 59.648 47.619 0.00 0.00 0.00 3.41
386 387 1.741706 CTCCAGCCAATCACACATGTC 59.258 52.381 0.00 0.00 0.00 3.06
388 389 1.741706 GTCTCCAGCCAATCACACATG 59.258 52.381 0.00 0.00 0.00 3.21
390 391 0.320683 CGTCTCCAGCCAATCACACA 60.321 55.000 0.00 0.00 0.00 3.72
418 419 5.458041 TTCAGCCTTTCCTTTGATTTCTG 57.542 39.130 0.00 0.00 0.00 3.02
421 422 3.899980 AGCTTCAGCCTTTCCTTTGATTT 59.100 39.130 0.00 0.00 43.38 2.17
423 424 3.087781 GAGCTTCAGCCTTTCCTTTGAT 58.912 45.455 0.00 0.00 43.38 2.57
424 425 2.508526 GAGCTTCAGCCTTTCCTTTGA 58.491 47.619 0.00 0.00 43.38 2.69
425 426 1.198637 CGAGCTTCAGCCTTTCCTTTG 59.801 52.381 0.00 0.00 43.38 2.77
428 429 1.376553 GCGAGCTTCAGCCTTTCCT 60.377 57.895 0.00 0.00 43.38 3.36
430 431 0.671781 TGAGCGAGCTTCAGCCTTTC 60.672 55.000 0.00 0.06 43.38 2.62
431 432 0.952984 GTGAGCGAGCTTCAGCCTTT 60.953 55.000 0.00 0.00 43.38 3.11
506 507 8.501904 TCAAGGAGGACAATTTATCAATGGATA 58.498 33.333 0.00 0.00 34.89 2.59
520 521 5.487488 ACATACATACCTTCAAGGAGGACAA 59.513 40.000 11.59 0.00 37.67 3.18
529 530 4.509970 GCATGCGTACATACATACCTTCAA 59.490 41.667 0.00 0.00 33.67 2.69
532 533 4.066646 TGCATGCGTACATACATACCTT 57.933 40.909 14.09 0.00 33.67 3.50
603 611 0.740516 GCCGGGCATGGTTCAATTTG 60.741 55.000 15.62 0.00 0.00 2.32
606 614 2.759560 GGCCGGGCATGGTTCAAT 60.760 61.111 25.33 0.00 0.00 2.57
828 855 2.971413 GCTGCATAGCCGCCAGAG 60.971 66.667 0.00 0.00 44.33 3.35
881 1478 2.648059 GCACAAACATCTGGAGGCTAT 58.352 47.619 0.00 0.00 0.00 2.97
1110 1778 0.462759 GCTGATCAGGGGAGAAACGG 60.463 60.000 23.89 0.00 0.00 4.44
1118 1786 0.462789 GCCAATTTGCTGATCAGGGG 59.537 55.000 23.89 0.02 0.00 4.79
1272 1940 4.782019 TGTTCCACAACAAATGCTATCC 57.218 40.909 0.00 0.00 39.69 2.59
1313 1981 7.792374 ATTACATTGCTACAACATACTCCAG 57.208 36.000 0.00 0.00 0.00 3.86
1343 2011 5.503031 CGAATTCATGAAGCAAAGATAGCGT 60.503 40.000 14.54 0.00 37.01 5.07
1435 2111 3.742882 GCTTCATGAAAAACAGGGCTTTC 59.257 43.478 9.88 0.00 33.10 2.62
1505 2188 0.107214 TTTGGCGCTTCCTCATAGGG 60.107 55.000 7.64 0.00 35.59 3.53
1527 2210 4.375313 AGTCTTATCTCCCACCAAATCCT 58.625 43.478 0.00 0.00 0.00 3.24
1571 2255 2.076100 CAAGTTGCCAAGATCGTAGCA 58.924 47.619 0.00 0.00 0.00 3.49
1582 2266 7.341445 AGAAGTGTTAATTAACAAGTTGCCA 57.659 32.000 28.05 4.91 46.54 4.92
1644 2413 4.944930 TCGTTGAAAAGAAAGGAGTTTCCA 59.055 37.500 0.00 0.00 42.84 3.53
1646 2415 7.915923 AGAATTCGTTGAAAAGAAAGGAGTTTC 59.084 33.333 0.00 0.00 42.25 2.78
1653 2422 6.810888 TTGCAGAATTCGTTGAAAAGAAAG 57.189 33.333 0.00 0.00 0.00 2.62
1662 2431 9.988350 ATATAGTTTAGTTTGCAGAATTCGTTG 57.012 29.630 0.00 0.00 0.00 4.10
1672 2441 8.450578 AGCTTGCATATATAGTTTAGTTTGCA 57.549 30.769 0.00 0.40 37.10 4.08
1694 2463 0.033504 CCTCGTGGTGTGTTGTAGCT 59.966 55.000 0.00 0.00 0.00 3.32
1702 2471 1.956170 GAGTGTGCCTCGTGGTGTG 60.956 63.158 5.26 0.00 35.27 3.82
1703 2472 1.966901 TTGAGTGTGCCTCGTGGTGT 61.967 55.000 5.26 0.00 43.64 4.16
1704 2473 1.224069 CTTGAGTGTGCCTCGTGGTG 61.224 60.000 5.26 0.00 43.64 4.17
1705 2474 1.069765 CTTGAGTGTGCCTCGTGGT 59.930 57.895 5.26 0.00 43.64 4.16
1706 2475 2.320587 GCTTGAGTGTGCCTCGTGG 61.321 63.158 0.00 0.00 43.64 4.94
1751 2521 2.940890 TTCCGATCATTCCCTGCGGC 62.941 60.000 0.00 0.00 41.61 6.53
2090 2872 5.105752 AGATGAATCTGTACACGAAAGAGC 58.894 41.667 0.00 0.00 35.42 4.09
2108 2890 2.027285 TCCATTCAAGTCCGCAAGATGA 60.027 45.455 0.00 0.00 43.02 2.92
2462 3244 8.690884 AGACTATATATATCTGACGCAAATGCT 58.309 33.333 0.00 0.00 39.32 3.79
2513 3295 4.407621 TCAAAATATCCCTTCGCTCCTGTA 59.592 41.667 0.00 0.00 0.00 2.74
2570 3352 6.222038 GGGAGAAATCCCCTTCAATAAAAC 57.778 41.667 1.55 0.00 44.18 2.43
2663 3600 1.284785 AGCTTAGGTGCCATTGCCTAA 59.715 47.619 0.00 0.00 42.96 2.69
2754 3693 6.036191 GTCTGAATGTTATCTTCCTCCGTTTC 59.964 42.308 0.00 0.00 0.00 2.78
2759 3698 7.147637 ACCTTAGTCTGAATGTTATCTTCCTCC 60.148 40.741 0.00 0.00 0.00 4.30
2953 3898 8.543774 AGGAAATACATAAAGCTCTCTTCTCAA 58.456 33.333 0.00 0.00 0.00 3.02
2955 3900 8.825745 CAAGGAAATACATAAAGCTCTCTTCTC 58.174 37.037 0.00 0.00 0.00 2.87
2956 3901 8.543774 TCAAGGAAATACATAAAGCTCTCTTCT 58.456 33.333 0.00 0.00 0.00 2.85
2957 3902 8.723942 TCAAGGAAATACATAAAGCTCTCTTC 57.276 34.615 0.00 0.00 0.00 2.87
3060 4010 4.918810 TGAGCTTGAATATCGTGCTAGA 57.081 40.909 0.00 0.00 33.83 2.43
3068 4018 4.288531 GCTTGCACATGAGCTTGAATATC 58.711 43.478 16.24 0.00 36.01 1.63
3071 4021 1.203994 GGCTTGCACATGAGCTTGAAT 59.796 47.619 16.24 0.00 38.89 2.57
3089 4039 3.509967 AGGTTTGTTTACTGCTAATGGGC 59.490 43.478 0.00 0.00 0.00 5.36
3161 4112 6.203723 GTCAAATACCTCAACAGATGATAGCC 59.796 42.308 0.00 0.00 37.44 3.93
3344 4295 6.667414 ACATATGGTTGTTAATGTGGTGGATT 59.333 34.615 7.80 0.00 31.56 3.01
3472 4424 7.016153 TCATCCAACTTTCAACTACCTACAT 57.984 36.000 0.00 0.00 0.00 2.29
3526 4478 7.412020 GCATACTCTTACTTGTTCTAACTGTGC 60.412 40.741 0.00 0.00 0.00 4.57
3684 4636 1.202806 AGTAAACTTGGCTGCAGCTCA 60.203 47.619 35.82 27.97 41.70 4.26
3711 4663 3.282885 CTTTCCTATTTCCCCAGACTGC 58.717 50.000 0.00 0.00 0.00 4.40
3780 4735 0.252479 CCTGCTGGCAGTGATCTTCT 59.748 55.000 17.16 0.00 42.15 2.85
3822 4777 5.233050 CGTATCTTGTGCTTCCTGTAATGAG 59.767 44.000 0.00 0.00 0.00 2.90
3830 4785 1.134670 GCTCCGTATCTTGTGCTTCCT 60.135 52.381 0.00 0.00 0.00 3.36
3852 4807 0.395312 TTCCTGGTCGGTCAACCTTC 59.605 55.000 0.00 0.00 40.20 3.46
3859 4814 2.047179 GCCTGTTCCTGGTCGGTC 60.047 66.667 0.00 0.00 0.00 4.79
3874 4829 5.756849 GCTAGATTTAGAGCTGAAAATGCC 58.243 41.667 7.43 0.00 35.73 4.40
3916 4871 7.066284 TGCTTTCCTGCTAAAGATATTCAAGTC 59.934 37.037 9.89 0.00 38.50 3.01
3959 4914 1.549243 TAGGTGTGAGCCGCCATTCA 61.549 55.000 0.00 0.00 46.87 2.57
3966 4921 0.109086 CAGTCTGTAGGTGTGAGCCG 60.109 60.000 0.00 0.00 0.00 5.52
3983 4938 0.541863 AATCGTTAGGCCCCTGACAG 59.458 55.000 0.00 0.00 32.89 3.51
4104 5059 0.543749 AGGTCTTAGCTGCCACCATC 59.456 55.000 11.24 0.00 0.00 3.51
4115 5070 5.348986 TGCTTAGCGTGATAAAGGTCTTAG 58.651 41.667 0.00 0.00 0.00 2.18
4397 5355 2.452505 TCGGTCTGACATCACCATGTA 58.547 47.619 10.38 0.00 43.79 2.29
4418 5376 7.602265 TCAACTTGTCATCGAGAAATATGTTGA 59.398 33.333 12.91 12.91 37.25 3.18
4528 5486 0.388907 AGCATCAATTGGTTGCGTGC 60.389 50.000 20.98 14.47 42.17 5.34
4575 5533 7.037438 GTGTTAAATGTCCATCTTGCATGAAT 58.963 34.615 6.36 0.00 0.00 2.57
4594 5552 7.817962 GCTGTAGACCTCATTCTTTAGTGTTAA 59.182 37.037 0.00 0.00 0.00 2.01
4607 5565 2.093235 GCTCCAAAGCTGTAGACCTCAT 60.093 50.000 0.00 0.00 45.55 2.90
4635 5593 3.587061 TCTTCCTGGTAATGAGCTCCAAA 59.413 43.478 12.15 0.00 0.00 3.28
4641 5599 4.579869 TGTTCTTCTTCCTGGTAATGAGC 58.420 43.478 0.00 0.00 0.00 4.26
4686 5644 1.271379 ACTTTGCGGTACTCATCGACA 59.729 47.619 0.00 0.00 0.00 4.35
4891 5849 2.475200 GCCTTATTGCGTGCCTTAAG 57.525 50.000 0.00 0.00 0.00 1.85
4975 5933 7.178451 CCTTCATGGTACCCTGACTTTAATTTT 59.822 37.037 18.39 0.00 0.00 1.82
4976 5934 6.663523 CCTTCATGGTACCCTGACTTTAATTT 59.336 38.462 18.39 0.00 0.00 1.82
5065 6028 7.441890 TTTTCAAAAAGGGACAAAAGGAAAC 57.558 32.000 0.00 0.00 0.00 2.78
5111 6075 4.457496 ACACGATGCAGAGGCCGG 62.457 66.667 0.00 0.00 40.13 6.13
5112 6076 2.913054 ATCACACGATGCAGAGGCCG 62.913 60.000 0.00 0.00 40.13 6.13
5113 6077 1.153289 ATCACACGATGCAGAGGCC 60.153 57.895 0.00 0.00 40.13 5.19
5169 6133 7.693969 ATCCAAGTTAGACATTTTTCCTGAG 57.306 36.000 0.00 0.00 0.00 3.35
5284 6262 2.173669 CAGTGCGTAATCCAGGCCG 61.174 63.158 0.00 0.00 37.22 6.13
5324 6302 9.410556 CGTGGAATATTTTTCACTTTTCAGAAT 57.589 29.630 5.87 0.00 38.94 2.40
5330 6308 6.276847 TGTGCGTGGAATATTTTTCACTTTT 58.723 32.000 5.87 0.00 38.94 2.27
5331 6309 5.837437 TGTGCGTGGAATATTTTTCACTTT 58.163 33.333 5.87 0.00 38.94 2.66
5332 6310 5.446143 TGTGCGTGGAATATTTTTCACTT 57.554 34.783 5.87 0.00 38.94 3.16
5333 6311 5.643379 ATGTGCGTGGAATATTTTTCACT 57.357 34.783 5.87 0.00 38.94 3.41
5334 6312 6.704512 AAATGTGCGTGGAATATTTTTCAC 57.295 33.333 0.00 0.00 37.90 3.18
5335 6313 7.867909 TGTTAAATGTGCGTGGAATATTTTTCA 59.132 29.630 0.00 0.00 0.00 2.69
5336 6314 8.159709 GTGTTAAATGTGCGTGGAATATTTTTC 58.840 33.333 0.00 0.00 0.00 2.29
5337 6315 7.870445 AGTGTTAAATGTGCGTGGAATATTTTT 59.130 29.630 0.00 0.00 0.00 1.94
5465 6443 0.107654 GGAGGGGATCAAAGTCACCG 60.108 60.000 0.00 0.00 46.65 4.94
5567 6546 2.972625 TGACCGTGCTCCTTTATTCAG 58.027 47.619 0.00 0.00 0.00 3.02
5568 6547 3.410631 TTGACCGTGCTCCTTTATTCA 57.589 42.857 0.00 0.00 0.00 2.57
5572 6551 2.419574 GCCTATTGACCGTGCTCCTTTA 60.420 50.000 0.00 0.00 0.00 1.85
5573 6552 1.679032 GCCTATTGACCGTGCTCCTTT 60.679 52.381 0.00 0.00 0.00 3.11
5574 6553 0.107654 GCCTATTGACCGTGCTCCTT 60.108 55.000 0.00 0.00 0.00 3.36
5581 6560 2.936498 CGAAATCTTGCCTATTGACCGT 59.064 45.455 0.00 0.00 0.00 4.83
5582 6561 2.287915 CCGAAATCTTGCCTATTGACCG 59.712 50.000 0.00 0.00 0.00 4.79
5585 6564 3.924114 TCCCGAAATCTTGCCTATTGA 57.076 42.857 0.00 0.00 0.00 2.57
5591 6570 3.866883 TGAAATTCCCGAAATCTTGCC 57.133 42.857 0.00 0.00 0.00 4.52
5596 6575 9.759259 GAAATGATTTTTGAAATTCCCGAAATC 57.241 29.630 13.80 13.80 35.28 2.17
5598 6577 8.668510 TGAAATGATTTTTGAAATTCCCGAAA 57.331 26.923 0.00 0.00 0.00 3.46
5659 6648 8.444715 AGGTAAAAACGAATTCCAAACAAAAAC 58.555 29.630 0.00 0.00 0.00 2.43
5660 6649 8.443937 CAGGTAAAAACGAATTCCAAACAAAAA 58.556 29.630 0.00 0.00 0.00 1.94
5669 6658 4.022676 TCAAGCCAGGTAAAAACGAATTCC 60.023 41.667 0.00 0.00 0.00 3.01
5683 6672 1.699083 ACCCCAAATTTTCAAGCCAGG 59.301 47.619 0.00 0.00 0.00 4.45
5695 6684 8.809066 GGTACTGAAATACTTTAAACCCCAAAT 58.191 33.333 0.00 0.00 0.00 2.32
5697 6686 6.720748 GGGTACTGAAATACTTTAAACCCCAA 59.279 38.462 0.00 0.00 38.47 4.12
5713 6702 5.936187 TGATTATTACGGTGGGTACTGAA 57.064 39.130 0.00 0.00 36.65 3.02
5740 6729 9.820229 CTATCACGCAGAGTAATTTTACAAAAA 57.180 29.630 3.50 0.00 36.12 1.94
5742 6731 7.333423 AGCTATCACGCAGAGTAATTTTACAAA 59.667 33.333 3.50 0.00 36.12 2.83
5744 6733 6.338146 AGCTATCACGCAGAGTAATTTTACA 58.662 36.000 3.50 0.00 36.12 2.41
5745 6734 6.475727 TGAGCTATCACGCAGAGTAATTTTAC 59.524 38.462 0.00 0.00 0.00 2.01
5747 6736 5.419542 TGAGCTATCACGCAGAGTAATTTT 58.580 37.500 0.00 0.00 0.00 1.82
5760 6749 7.877097 AGGTTCATCTGATTAATGAGCTATCAC 59.123 37.037 0.00 0.00 38.57 3.06
5791 6780 9.499479 ACTGCTGTCTTTTATATATTGATCAGG 57.501 33.333 0.00 0.00 0.00 3.86
5799 6788 9.594936 AGGAGACTACTGCTGTCTTTTATATAT 57.405 33.333 0.00 0.00 43.88 0.86
5800 6789 8.998277 AGGAGACTACTGCTGTCTTTTATATA 57.002 34.615 0.00 0.00 43.88 0.86
5801 6790 7.782644 AGAGGAGACTACTGCTGTCTTTTATAT 59.217 37.037 0.00 0.00 44.53 0.86
5802 6791 7.120051 AGAGGAGACTACTGCTGTCTTTTATA 58.880 38.462 0.00 0.00 44.53 0.98
5803 6792 5.955355 AGAGGAGACTACTGCTGTCTTTTAT 59.045 40.000 0.00 0.00 44.53 1.40
5804 6793 5.326069 AGAGGAGACTACTGCTGTCTTTTA 58.674 41.667 0.00 0.00 44.53 1.52
5805 6794 4.156477 AGAGGAGACTACTGCTGTCTTTT 58.844 43.478 0.00 0.00 44.53 2.27
5806 6795 3.773560 AGAGGAGACTACTGCTGTCTTT 58.226 45.455 0.00 0.00 44.53 2.52
5807 6796 3.449746 AGAGGAGACTACTGCTGTCTT 57.550 47.619 0.00 0.00 44.53 3.01
5808 6797 3.684413 GCTAGAGGAGACTACTGCTGTCT 60.684 52.174 0.00 0.65 44.53 3.41
5809 6798 2.616842 GCTAGAGGAGACTACTGCTGTC 59.383 54.545 0.00 0.00 44.53 3.51
5810 6799 2.025793 TGCTAGAGGAGACTACTGCTGT 60.026 50.000 0.00 0.66 44.53 4.40
5811 6800 2.649190 TGCTAGAGGAGACTACTGCTG 58.351 52.381 0.00 0.00 44.53 4.41
5813 6802 3.218453 TCATGCTAGAGGAGACTACTGC 58.782 50.000 0.00 0.00 44.43 4.40
5814 6803 4.713553 TCTCATGCTAGAGGAGACTACTG 58.286 47.826 0.00 0.00 44.43 2.74
5815 6804 5.381184 TTCTCATGCTAGAGGAGACTACT 57.619 43.478 7.65 0.00 44.43 2.57
5816 6805 6.096282 ACTTTTCTCATGCTAGAGGAGACTAC 59.904 42.308 7.65 0.00 44.43 2.73
5817 6806 6.191315 ACTTTTCTCATGCTAGAGGAGACTA 58.809 40.000 7.65 0.00 44.43 2.59
5818 6807 7.793648 GAAACTTTTCTCATGCTAGAGGAGACT 60.794 40.741 7.65 0.00 37.41 3.24
5819 6808 5.337578 ACTTTTCTCATGCTAGAGGAGAC 57.662 43.478 7.65 0.00 37.41 3.36
5820 6809 6.014242 TGAAACTTTTCTCATGCTAGAGGAGA 60.014 38.462 0.00 0.00 38.02 3.71
5821 6810 6.169094 TGAAACTTTTCTCATGCTAGAGGAG 58.831 40.000 0.00 0.00 38.02 3.69
5822 6811 6.114187 TGAAACTTTTCTCATGCTAGAGGA 57.886 37.500 0.00 0.00 38.02 3.71
5823 6812 5.353678 CCTGAAACTTTTCTCATGCTAGAGG 59.646 44.000 0.00 0.00 38.02 3.69
5824 6813 5.936956 ACCTGAAACTTTTCTCATGCTAGAG 59.063 40.000 0.00 0.22 38.02 2.43
5825 6814 5.869579 ACCTGAAACTTTTCTCATGCTAGA 58.130 37.500 0.00 0.00 38.02 2.43
5826 6815 6.566197 AACCTGAAACTTTTCTCATGCTAG 57.434 37.500 3.48 0.00 38.02 3.42
5827 6816 6.959639 AAACCTGAAACTTTTCTCATGCTA 57.040 33.333 3.48 0.00 38.02 3.49
5828 6817 5.859205 AAACCTGAAACTTTTCTCATGCT 57.141 34.783 3.48 0.00 38.02 3.79
5829 6818 6.908870 AAAAACCTGAAACTTTTCTCATGC 57.091 33.333 3.48 0.00 38.02 4.06
5870 6859 9.632969 CGGTGAACAGTAAATCGAAATAAATAG 57.367 33.333 0.00 0.00 0.00 1.73
5871 6860 8.605746 CCGGTGAACAGTAAATCGAAATAAATA 58.394 33.333 0.00 0.00 0.00 1.40
5872 6861 7.120138 ACCGGTGAACAGTAAATCGAAATAAAT 59.880 33.333 6.12 0.00 0.00 1.40
5873 6862 6.427547 ACCGGTGAACAGTAAATCGAAATAAA 59.572 34.615 6.12 0.00 0.00 1.40
5874 6863 5.933463 ACCGGTGAACAGTAAATCGAAATAA 59.067 36.000 6.12 0.00 0.00 1.40
5875 6864 5.481105 ACCGGTGAACAGTAAATCGAAATA 58.519 37.500 6.12 0.00 0.00 1.40
5876 6865 4.320870 ACCGGTGAACAGTAAATCGAAAT 58.679 39.130 6.12 0.00 0.00 2.17
5877 6866 3.731089 ACCGGTGAACAGTAAATCGAAA 58.269 40.909 6.12 0.00 0.00 3.46
5878 6867 3.389925 ACCGGTGAACAGTAAATCGAA 57.610 42.857 6.12 0.00 0.00 3.71
5879 6868 3.758023 TCTACCGGTGAACAGTAAATCGA 59.242 43.478 19.93 0.00 0.00 3.59
5880 6869 4.100707 TCTACCGGTGAACAGTAAATCG 57.899 45.455 19.93 0.00 0.00 3.34
5881 6870 5.657474 TCATCTACCGGTGAACAGTAAATC 58.343 41.667 19.93 0.00 0.00 2.17
5882 6871 5.661458 CTCATCTACCGGTGAACAGTAAAT 58.339 41.667 19.93 0.00 0.00 1.40
5883 6872 4.619863 GCTCATCTACCGGTGAACAGTAAA 60.620 45.833 19.93 0.00 0.00 2.01
5884 6873 3.119245 GCTCATCTACCGGTGAACAGTAA 60.119 47.826 19.93 0.00 0.00 2.24
5885 6874 2.426024 GCTCATCTACCGGTGAACAGTA 59.574 50.000 19.93 0.00 0.00 2.74
5886 6875 1.204941 GCTCATCTACCGGTGAACAGT 59.795 52.381 19.93 0.00 0.00 3.55
5887 6876 1.471676 GGCTCATCTACCGGTGAACAG 60.472 57.143 19.93 6.55 0.00 3.16
5888 6877 0.535335 GGCTCATCTACCGGTGAACA 59.465 55.000 19.93 0.00 0.00 3.18
5889 6878 0.179081 GGGCTCATCTACCGGTGAAC 60.179 60.000 19.93 0.35 0.00 3.18
5890 6879 1.335132 GGGGCTCATCTACCGGTGAA 61.335 60.000 19.93 5.07 0.00 3.18
5891 6880 1.760875 GGGGCTCATCTACCGGTGA 60.761 63.158 19.93 13.35 0.00 4.02
5892 6881 2.822399 GGGGCTCATCTACCGGTG 59.178 66.667 19.93 7.59 0.00 4.94
5893 6882 2.838225 CGGGGCTCATCTACCGGT 60.838 66.667 13.98 13.98 42.48 5.28
5895 6884 3.616721 CCCGGGGCTCATCTACCG 61.617 72.222 14.71 0.00 45.57 4.02
5896 6885 3.942439 GCCCGGGGCTCATCTACC 61.942 72.222 30.86 0.00 46.69 3.18
5906 6895 2.499303 AATTCAACTGGAGCCCGGGG 62.499 60.000 25.28 9.31 33.40 5.73
5907 6896 0.254747 TAATTCAACTGGAGCCCGGG 59.745 55.000 19.09 19.09 33.40 5.73
5908 6897 2.222027 GATAATTCAACTGGAGCCCGG 58.778 52.381 0.00 0.00 35.68 5.73
5909 6898 1.867233 CGATAATTCAACTGGAGCCCG 59.133 52.381 0.00 0.00 0.00 6.13
5910 6899 1.604278 GCGATAATTCAACTGGAGCCC 59.396 52.381 0.00 0.00 0.00 5.19
5911 6900 1.604278 GGCGATAATTCAACTGGAGCC 59.396 52.381 0.00 0.00 35.00 4.70
5912 6901 2.545946 GAGGCGATAATTCAACTGGAGC 59.454 50.000 0.00 0.00 0.00 4.70
5913 6902 3.134458 GGAGGCGATAATTCAACTGGAG 58.866 50.000 0.00 0.00 0.00 3.86
5914 6903 2.483013 CGGAGGCGATAATTCAACTGGA 60.483 50.000 0.00 0.00 0.00 3.86
5915 6904 1.867233 CGGAGGCGATAATTCAACTGG 59.133 52.381 0.00 0.00 0.00 4.00
5916 6905 2.285220 CACGGAGGCGATAATTCAACTG 59.715 50.000 0.00 0.00 0.00 3.16
5917 6906 2.093658 ACACGGAGGCGATAATTCAACT 60.094 45.455 0.00 0.00 0.00 3.16
5918 6907 2.277084 ACACGGAGGCGATAATTCAAC 58.723 47.619 0.00 0.00 0.00 3.18
5919 6908 2.684001 ACACGGAGGCGATAATTCAA 57.316 45.000 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.