Multiple sequence alignment - TraesCS1A01G196600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G196600 chr1A 100.000 4050 0 0 1 4050 354941269 354937220 0.000000e+00 7480.0
1 TraesCS1A01G196600 chr1D 91.327 2260 107 37 1826 4050 282950309 282948104 0.000000e+00 3005.0
2 TraesCS1A01G196600 chr1D 88.221 1265 67 38 591 1816 282951571 282950350 0.000000e+00 1435.0
3 TraesCS1A01G196600 chr1B 88.340 2187 153 43 1351 3467 384300602 384298448 0.000000e+00 2532.0
4 TraesCS1A01G196600 chr1B 96.600 500 14 1 3551 4050 384298405 384297909 0.000000e+00 826.0
5 TraesCS1A01G196600 chr1B 87.326 718 68 10 2351 3064 34777018 34777716 0.000000e+00 800.0
6 TraesCS1A01G196600 chr1B 87.187 718 69 10 2351 3064 34794346 34795044 0.000000e+00 795.0
7 TraesCS1A01G196600 chr1B 84.531 821 38 36 591 1353 384301431 384300642 0.000000e+00 730.0
8 TraesCS1A01G196600 chr1B 86.842 76 10 0 432 507 384301510 384301435 7.210000e-13 86.1
9 TraesCS1A01G196600 chr2B 88.194 864 89 11 2162 3021 65472562 65473416 0.000000e+00 1018.0
10 TraesCS1A01G196600 chr4A 86.523 371 40 6 2291 2655 196609905 196609539 2.270000e-107 399.0
11 TraesCS1A01G196600 chr4A 84.642 293 30 8 2693 2983 196609536 196609257 1.110000e-70 278.0
12 TraesCS1A01G196600 chr4A 89.916 119 10 2 3070 3187 196609224 196609107 7.010000e-33 152.0
13 TraesCS1A01G196600 chr6B 94.397 232 10 1 1 232 237702046 237702274 1.790000e-93 353.0
14 TraesCS1A01G196600 chr6D 93.590 234 13 1 1 234 289430777 289430546 8.330000e-92 348.0
15 TraesCS1A01G196600 chr4D 94.273 227 11 1 6 232 258173152 258172928 3.000000e-91 346.0
16 TraesCS1A01G196600 chr4D 93.913 230 11 2 1 230 405778193 405777967 1.080000e-90 344.0
17 TraesCS1A01G196600 chr4D 91.770 243 17 2 1 243 87513182 87512943 6.490000e-88 335.0
18 TraesCS1A01G196600 chr7A 93.162 234 14 1 1 234 144860589 144860358 3.880000e-90 342.0
19 TraesCS1A01G196600 chr4B 92.797 236 15 1 1 236 107910594 107910827 1.390000e-89 340.0
20 TraesCS1A01G196600 chr2D 92.797 236 15 1 1 236 32616162 32616395 1.390000e-89 340.0
21 TraesCS1A01G196600 chr5D 92.405 237 16 1 1 237 331629891 331629657 1.800000e-88 337.0
22 TraesCS1A01G196600 chr5B 85.374 294 37 4 2362 2653 397963988 397964277 2.370000e-77 300.0
23 TraesCS1A01G196600 chr5B 87.903 124 13 2 3067 3189 397964580 397964702 1.170000e-30 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G196600 chr1A 354937220 354941269 4049 True 7480.000000 7480 100.00000 1 4050 1 chr1A.!!$R1 4049
1 TraesCS1A01G196600 chr1D 282948104 282951571 3467 True 2220.000000 3005 89.77400 591 4050 2 chr1D.!!$R1 3459
2 TraesCS1A01G196600 chr1B 384297909 384301510 3601 True 1043.525000 2532 89.07825 432 4050 4 chr1B.!!$R1 3618
3 TraesCS1A01G196600 chr1B 34777018 34777716 698 False 800.000000 800 87.32600 2351 3064 1 chr1B.!!$F1 713
4 TraesCS1A01G196600 chr1B 34794346 34795044 698 False 795.000000 795 87.18700 2351 3064 1 chr1B.!!$F2 713
5 TraesCS1A01G196600 chr2B 65472562 65473416 854 False 1018.000000 1018 88.19400 2162 3021 1 chr2B.!!$F1 859
6 TraesCS1A01G196600 chr4A 196609107 196609905 798 True 276.333333 399 87.02700 2291 3187 3 chr4A.!!$R1 896
7 TraesCS1A01G196600 chr5B 397963988 397964702 714 False 222.500000 300 86.63850 2362 3189 2 chr5B.!!$F1 827

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
199 200 0.028110 GTGGCATTTCTCGGAATCGC 59.972 55.0 0.0 0.0 36.13 4.58 F
382 383 0.035739 GCCCTGGACTTCCACGTAAA 59.964 55.0 0.0 0.0 42.01 2.01 F
417 418 0.107654 AACCTCTCCGCTTATGTGCC 60.108 55.0 0.0 0.0 0.00 5.01 F
1217 1274 0.161658 CTGCTGTACGTTCTTGCGTG 59.838 55.0 0.0 0.0 45.33 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1551 1670 0.237235 TGAACGAAGAAATGCGGTGC 59.763 50.000 0.00 0.0 0.00 5.01 R
1653 1772 0.609662 ATGCACAAATGGAGGCAACC 59.390 50.000 0.00 0.0 40.02 3.77 R
1930 2081 1.144936 GAGAACCCAGGGAGCATCG 59.855 63.158 14.54 0.0 34.37 3.84 R
3210 3405 1.202687 ACACACACACACATCCTCCAG 60.203 52.381 0.00 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.215719 GGGTTAATTAGATAAATGCCACTCC 57.784 40.000 0.00 0.00 0.00 3.85
25 26 6.775629 GGGTTAATTAGATAAATGCCACTCCA 59.224 38.462 0.00 0.00 0.00 3.86
26 27 7.286775 GGGTTAATTAGATAAATGCCACTCCAA 59.713 37.037 0.00 0.00 0.00 3.53
27 28 8.860088 GGTTAATTAGATAAATGCCACTCCAAT 58.140 33.333 0.00 0.00 0.00 3.16
48 49 7.512297 CCAATTATGGCGATTCATAAAAATGC 58.488 34.615 9.27 0.00 41.26 3.56
49 50 7.360269 CCAATTATGGCGATTCATAAAAATGCC 60.360 37.037 9.27 0.00 41.26 4.40
50 51 3.077229 TGGCGATTCATAAAAATGCCG 57.923 42.857 0.00 0.00 43.83 5.69
51 52 1.786579 GGCGATTCATAAAAATGCCGC 59.213 47.619 0.00 0.00 40.54 6.53
52 53 2.458951 GCGATTCATAAAAATGCCGCA 58.541 42.857 0.00 0.00 40.88 5.69
53 54 2.468777 GCGATTCATAAAAATGCCGCAG 59.531 45.455 0.00 0.00 40.88 5.18
54 55 2.468777 CGATTCATAAAAATGCCGCAGC 59.531 45.455 0.00 0.00 40.48 5.25
66 67 1.501169 GCCGCAGCAATTTTCAAACT 58.499 45.000 0.00 0.00 39.53 2.66
67 68 1.866601 GCCGCAGCAATTTTCAAACTT 59.133 42.857 0.00 0.00 39.53 2.66
68 69 2.287644 GCCGCAGCAATTTTCAAACTTT 59.712 40.909 0.00 0.00 39.53 2.66
69 70 3.845662 GCCGCAGCAATTTTCAAACTTTG 60.846 43.478 0.00 0.00 39.53 2.77
70 71 3.555139 CCGCAGCAATTTTCAAACTTTGA 59.445 39.130 0.00 0.00 38.04 2.69
71 72 7.420303 GCCGCAGCAATTTTCAAACTTTGAA 62.420 40.000 12.12 12.12 42.60 2.69
72 73 8.790072 GCCGCAGCAATTTTCAAACTTTGAAA 62.790 38.462 20.92 20.92 46.64 2.69
82 83 6.419980 TTCAAACTTTGAAAAATGCCACTG 57.580 33.333 13.50 0.00 45.94 3.66
83 84 4.332268 TCAAACTTTGAAAAATGCCACTGC 59.668 37.500 1.47 0.00 36.59 4.40
84 85 6.086224 TCAAACTTTGAAAAATGCCACTGCA 61.086 36.000 1.47 0.00 44.18 4.41
85 86 7.514697 TCAAACTTTGAAAAATGCCACTGCAA 61.515 34.615 1.47 0.00 43.63 4.08
86 87 8.755977 TCAAACTTTGAAAAATGCCACTGCAAT 61.756 33.333 1.47 0.00 43.63 3.56
108 109 7.990672 CAATTTTTGCAAACTTTGAAAAACGT 58.009 26.923 20.80 8.65 45.39 3.99
109 110 7.774224 ATTTTTGCAAACTTTGAAAAACGTC 57.226 28.000 16.90 0.00 45.39 4.34
110 111 5.907197 TTTGCAAACTTTGAAAAACGTCA 57.093 30.435 8.05 0.00 35.29 4.35
111 112 4.894798 TGCAAACTTTGAAAAACGTCAC 57.105 36.364 5.65 0.00 0.00 3.67
112 113 4.551388 TGCAAACTTTGAAAAACGTCACT 58.449 34.783 5.65 0.00 0.00 3.41
113 114 4.384247 TGCAAACTTTGAAAAACGTCACTG 59.616 37.500 5.65 0.00 0.00 3.66
114 115 4.720946 GCAAACTTTGAAAAACGTCACTGC 60.721 41.667 5.65 0.00 0.00 4.40
115 116 3.840890 ACTTTGAAAAACGTCACTGCA 57.159 38.095 0.00 0.00 0.00 4.41
116 117 3.758300 ACTTTGAAAAACGTCACTGCAG 58.242 40.909 13.48 13.48 0.00 4.41
117 118 3.438781 ACTTTGAAAAACGTCACTGCAGA 59.561 39.130 23.35 0.00 0.00 4.26
118 119 3.398954 TTGAAAAACGTCACTGCAGAC 57.601 42.857 23.35 8.52 35.19 3.51
119 120 2.627945 TGAAAAACGTCACTGCAGACT 58.372 42.857 23.35 0.00 36.38 3.24
120 121 3.006940 TGAAAAACGTCACTGCAGACTT 58.993 40.909 23.35 0.00 36.38 3.01
121 122 3.063452 TGAAAAACGTCACTGCAGACTTC 59.937 43.478 23.35 9.40 36.38 3.01
122 123 1.209128 AAACGTCACTGCAGACTTCG 58.791 50.000 23.35 19.66 36.38 3.79
123 124 0.384309 AACGTCACTGCAGACTTCGA 59.616 50.000 23.35 5.61 36.38 3.71
124 125 0.384309 ACGTCACTGCAGACTTCGAA 59.616 50.000 23.35 0.00 36.38 3.71
125 126 1.202371 ACGTCACTGCAGACTTCGAAA 60.202 47.619 23.35 0.00 36.38 3.46
126 127 1.453524 CGTCACTGCAGACTTCGAAAG 59.546 52.381 23.35 0.00 36.38 2.62
127 128 2.743938 GTCACTGCAGACTTCGAAAGA 58.256 47.619 23.35 0.97 35.65 2.52
128 129 3.321497 GTCACTGCAGACTTCGAAAGAT 58.679 45.455 23.35 0.00 41.60 2.40
129 130 3.122613 GTCACTGCAGACTTCGAAAGATG 59.877 47.826 23.35 3.24 41.60 2.90
130 131 2.072298 ACTGCAGACTTCGAAAGATGC 58.928 47.619 23.35 16.87 41.65 3.91
131 132 1.396301 CTGCAGACTTCGAAAGATGCC 59.604 52.381 8.42 7.63 41.06 4.40
132 133 1.270785 TGCAGACTTCGAAAGATGCCA 60.271 47.619 19.47 9.45 41.06 4.92
133 134 1.129437 GCAGACTTCGAAAGATGCCAC 59.871 52.381 14.12 0.00 41.60 5.01
134 135 2.693069 CAGACTTCGAAAGATGCCACT 58.307 47.619 0.00 0.00 41.60 4.00
135 136 2.414481 CAGACTTCGAAAGATGCCACTG 59.586 50.000 0.00 0.00 41.60 3.66
136 137 2.300152 AGACTTCGAAAGATGCCACTGA 59.700 45.455 0.00 0.00 41.60 3.41
137 138 3.067106 GACTTCGAAAGATGCCACTGAA 58.933 45.455 0.00 0.00 41.60 3.02
138 139 3.476552 ACTTCGAAAGATGCCACTGAAA 58.523 40.909 0.00 0.00 41.60 2.69
139 140 3.882888 ACTTCGAAAGATGCCACTGAAAA 59.117 39.130 0.00 0.00 41.60 2.29
140 141 4.520492 ACTTCGAAAGATGCCACTGAAAAT 59.480 37.500 0.00 0.00 41.60 1.82
141 142 4.424061 TCGAAAGATGCCACTGAAAATG 57.576 40.909 0.00 0.00 33.31 2.32
142 143 3.191162 TCGAAAGATGCCACTGAAAATGG 59.809 43.478 0.00 0.00 36.13 3.16
153 154 5.933790 CCACTGAAAATGGCATGAAAAATG 58.066 37.500 0.00 0.00 0.00 2.32
154 155 5.106475 CCACTGAAAATGGCATGAAAAATGG 60.106 40.000 0.00 2.14 0.00 3.16
155 156 4.456566 ACTGAAAATGGCATGAAAAATGGC 59.543 37.500 0.00 5.04 43.83 4.40
183 184 6.419980 TTCAAAGTTTGAAAATTGCAGTGG 57.580 33.333 25.15 0.00 45.94 4.00
184 185 4.332268 TCAAAGTTTGAAAATTGCAGTGGC 59.668 37.500 15.92 0.00 36.59 5.01
185 186 6.086224 TCAAAGTTTGAAAATTGCAGTGGCA 61.086 36.000 15.92 0.00 42.19 4.92
186 187 7.351780 TCAAAGTTTGAAAATTGCAGTGGCAT 61.352 34.615 15.92 0.00 42.92 4.40
187 188 8.755977 TCAAAGTTTGAAAATTGCAGTGGCATT 61.756 33.333 15.92 0.00 42.92 3.56
194 195 4.301505 GCAGTGGCATTTCTCGGA 57.698 55.556 0.00 0.00 40.72 4.55
195 196 2.555123 GCAGTGGCATTTCTCGGAA 58.445 52.632 0.00 0.00 40.72 4.30
196 197 1.098050 GCAGTGGCATTTCTCGGAAT 58.902 50.000 0.00 0.00 40.72 3.01
197 198 1.064654 GCAGTGGCATTTCTCGGAATC 59.935 52.381 0.00 0.00 40.72 2.52
198 199 1.328680 CAGTGGCATTTCTCGGAATCG 59.671 52.381 0.00 0.00 37.82 3.34
199 200 0.028110 GTGGCATTTCTCGGAATCGC 59.972 55.000 0.00 0.00 36.13 4.58
200 201 1.095228 TGGCATTTCTCGGAATCGCC 61.095 55.000 14.51 14.51 35.56 5.54
201 202 1.095228 GGCATTTCTCGGAATCGCCA 61.095 55.000 15.63 0.00 35.32 5.69
202 203 0.305922 GCATTTCTCGGAATCGCCAG 59.694 55.000 0.00 0.00 35.94 4.85
203 204 1.939974 CATTTCTCGGAATCGCCAGA 58.060 50.000 0.00 0.00 35.94 3.86
204 205 2.487934 CATTTCTCGGAATCGCCAGAT 58.512 47.619 0.00 0.00 39.12 2.90
206 207 2.691409 TTCTCGGAATCGCCAGATTT 57.309 45.000 0.00 0.00 46.30 2.17
207 208 1.939974 TCTCGGAATCGCCAGATTTG 58.060 50.000 0.00 0.00 46.30 2.32
208 209 0.940126 CTCGGAATCGCCAGATTTGG 59.060 55.000 0.00 0.00 46.30 3.28
209 210 0.539518 TCGGAATCGCCAGATTTGGA 59.460 50.000 6.43 0.00 46.30 3.53
210 211 1.473257 TCGGAATCGCCAGATTTGGAG 60.473 52.381 6.43 2.53 46.30 3.86
211 212 4.059378 TCGGAATCGCCAGATTTGGAGT 62.059 50.000 6.43 0.00 46.30 3.85
237 238 7.784633 ACATTTGTCAAATTAACCCTTGTTG 57.215 32.000 8.12 0.00 35.87 3.33
238 239 7.334858 ACATTTGTCAAATTAACCCTTGTTGT 58.665 30.769 8.12 0.00 35.87 3.32
239 240 7.826744 ACATTTGTCAAATTAACCCTTGTTGTT 59.173 29.630 8.12 0.00 35.87 2.83
240 241 8.672815 CATTTGTCAAATTAACCCTTGTTGTTT 58.327 29.630 8.12 0.00 35.87 2.83
241 242 7.835634 TTGTCAAATTAACCCTTGTTGTTTC 57.164 32.000 0.00 0.00 35.87 2.78
242 243 6.936279 TGTCAAATTAACCCTTGTTGTTTCA 58.064 32.000 0.00 0.00 35.87 2.69
243 244 6.814146 TGTCAAATTAACCCTTGTTGTTTCAC 59.186 34.615 0.00 0.00 35.87 3.18
244 245 7.039270 GTCAAATTAACCCTTGTTGTTTCACT 58.961 34.615 0.00 0.00 35.87 3.41
245 246 7.010091 GTCAAATTAACCCTTGTTGTTTCACTG 59.990 37.037 0.00 0.00 35.87 3.66
246 247 2.959507 AACCCTTGTTGTTTCACTGC 57.040 45.000 0.00 0.00 32.13 4.40
247 248 0.738389 ACCCTTGTTGTTTCACTGCG 59.262 50.000 0.00 0.00 0.00 5.18
248 249 0.738389 CCCTTGTTGTTTCACTGCGT 59.262 50.000 0.00 0.00 0.00 5.24
249 250 1.134175 CCCTTGTTGTTTCACTGCGTT 59.866 47.619 0.00 0.00 0.00 4.84
250 251 2.356382 CCCTTGTTGTTTCACTGCGTTA 59.644 45.455 0.00 0.00 0.00 3.18
251 252 3.181495 CCCTTGTTGTTTCACTGCGTTAA 60.181 43.478 0.00 0.00 0.00 2.01
252 253 4.035017 CCTTGTTGTTTCACTGCGTTAAG 58.965 43.478 0.00 0.00 0.00 1.85
275 276 4.823157 CACAAAATGGGCATGAATCTTGA 58.177 39.130 0.00 0.00 0.00 3.02
276 277 4.628333 CACAAAATGGGCATGAATCTTGAC 59.372 41.667 0.00 0.00 0.00 3.18
277 278 3.788333 AAATGGGCATGAATCTTGACG 57.212 42.857 0.00 0.00 0.00 4.35
278 279 1.027357 ATGGGCATGAATCTTGACGC 58.973 50.000 0.00 1.59 0.00 5.19
279 280 1.353103 GGGCATGAATCTTGACGCG 59.647 57.895 3.53 3.53 0.00 6.01
280 281 1.353103 GGCATGAATCTTGACGCGG 59.647 57.895 12.47 0.00 0.00 6.46
281 282 1.297893 GCATGAATCTTGACGCGGC 60.298 57.895 12.47 8.67 0.00 6.53
282 283 1.980951 GCATGAATCTTGACGCGGCA 61.981 55.000 12.71 12.71 0.00 5.69
283 284 0.447406 CATGAATCTTGACGCGGCAA 59.553 50.000 28.30 28.30 0.00 4.52
284 285 0.447801 ATGAATCTTGACGCGGCAAC 59.552 50.000 26.47 15.15 0.00 4.17
285 286 1.134694 GAATCTTGACGCGGCAACC 59.865 57.895 26.47 9.58 0.00 3.77
286 287 2.253414 GAATCTTGACGCGGCAACCC 62.253 60.000 26.47 9.20 0.00 4.11
298 299 2.742372 CAACCCCCGTCAAGCGAG 60.742 66.667 0.00 0.00 44.77 5.03
299 300 3.239253 AACCCCCGTCAAGCGAGT 61.239 61.111 0.00 0.00 44.77 4.18
300 301 3.236003 AACCCCCGTCAAGCGAGTC 62.236 63.158 0.00 0.00 44.77 3.36
301 302 4.796231 CCCCCGTCAAGCGAGTCG 62.796 72.222 8.54 8.54 44.77 4.18
302 303 4.796231 CCCCGTCAAGCGAGTCGG 62.796 72.222 15.52 9.38 44.77 4.79
303 304 4.052229 CCCGTCAAGCGAGTCGGT 62.052 66.667 12.25 12.25 44.77 4.69
304 305 2.504244 CCGTCAAGCGAGTCGGTC 60.504 66.667 18.78 4.73 44.77 4.79
315 316 2.429739 GTCGGTCGGACGTCCAAC 60.430 66.667 32.80 25.79 35.61 3.77
316 317 2.906388 TCGGTCGGACGTCCAACA 60.906 61.111 32.80 14.28 35.14 3.33
317 318 2.732094 CGGTCGGACGTCCAACAC 60.732 66.667 32.80 23.90 35.14 3.32
318 319 2.356673 GGTCGGACGTCCAACACC 60.357 66.667 32.80 28.05 35.14 4.16
319 320 2.732658 GTCGGACGTCCAACACCT 59.267 61.111 32.80 0.00 35.14 4.00
320 321 1.526575 GGTCGGACGTCCAACACCTA 61.527 60.000 32.80 7.08 35.14 3.08
321 322 0.529378 GTCGGACGTCCAACACCTAT 59.471 55.000 32.80 0.00 35.14 2.57
322 323 1.067354 GTCGGACGTCCAACACCTATT 60.067 52.381 32.80 0.00 35.14 1.73
323 324 1.619827 TCGGACGTCCAACACCTATTT 59.380 47.619 32.80 0.00 35.14 1.40
324 325 1.997606 CGGACGTCCAACACCTATTTC 59.002 52.381 32.80 2.50 35.14 2.17
325 326 2.353406 CGGACGTCCAACACCTATTTCT 60.353 50.000 32.80 0.00 35.14 2.52
326 327 3.671716 GGACGTCCAACACCTATTTCTT 58.328 45.455 29.75 0.00 35.64 2.52
327 328 4.618927 CGGACGTCCAACACCTATTTCTTA 60.619 45.833 32.80 0.00 35.14 2.10
328 329 5.240121 GGACGTCCAACACCTATTTCTTAA 58.760 41.667 29.75 0.00 35.64 1.85
329 330 5.878669 GGACGTCCAACACCTATTTCTTAAT 59.121 40.000 29.75 0.00 35.64 1.40
330 331 6.183360 GGACGTCCAACACCTATTTCTTAATG 60.183 42.308 29.75 0.00 35.64 1.90
331 332 5.123344 ACGTCCAACACCTATTTCTTAATGC 59.877 40.000 0.00 0.00 0.00 3.56
332 333 5.448632 CGTCCAACACCTATTTCTTAATGCC 60.449 44.000 0.00 0.00 0.00 4.40
333 334 5.417580 GTCCAACACCTATTTCTTAATGCCA 59.582 40.000 0.00 0.00 0.00 4.92
334 335 5.652014 TCCAACACCTATTTCTTAATGCCAG 59.348 40.000 0.00 0.00 0.00 4.85
335 336 5.343249 CAACACCTATTTCTTAATGCCAGC 58.657 41.667 0.00 0.00 0.00 4.85
336 337 3.954258 ACACCTATTTCTTAATGCCAGCC 59.046 43.478 0.00 0.00 0.00 4.85
337 338 3.953612 CACCTATTTCTTAATGCCAGCCA 59.046 43.478 0.00 0.00 0.00 4.75
338 339 4.037208 CACCTATTTCTTAATGCCAGCCAG 59.963 45.833 0.00 0.00 0.00 4.85
339 340 3.571401 CCTATTTCTTAATGCCAGCCAGG 59.429 47.826 0.00 0.00 41.84 4.45
340 341 2.603075 TTTCTTAATGCCAGCCAGGT 57.397 45.000 0.00 0.00 40.61 4.00
341 342 1.838112 TTCTTAATGCCAGCCAGGTG 58.162 50.000 0.00 0.00 40.61 4.00
342 343 0.991146 TCTTAATGCCAGCCAGGTGA 59.009 50.000 0.00 0.00 40.61 4.02
343 344 1.354031 TCTTAATGCCAGCCAGGTGAA 59.646 47.619 0.00 0.00 40.61 3.18
344 345 1.747355 CTTAATGCCAGCCAGGTGAAG 59.253 52.381 0.00 0.00 40.61 3.02
345 346 0.991146 TAATGCCAGCCAGGTGAAGA 59.009 50.000 0.00 0.00 40.61 2.87
346 347 0.112995 AATGCCAGCCAGGTGAAGAA 59.887 50.000 0.00 0.00 40.61 2.52
347 348 0.610232 ATGCCAGCCAGGTGAAGAAC 60.610 55.000 0.00 0.00 40.61 3.01
348 349 1.073897 GCCAGCCAGGTGAAGAACT 59.926 57.895 0.00 0.00 40.61 3.01
349 350 0.538287 GCCAGCCAGGTGAAGAACTT 60.538 55.000 0.00 0.00 40.61 2.66
350 351 1.242076 CCAGCCAGGTGAAGAACTTG 58.758 55.000 0.00 0.00 35.67 3.16
351 352 0.595095 CAGCCAGGTGAAGAACTTGC 59.405 55.000 0.00 0.00 34.59 4.01
352 353 0.183492 AGCCAGGTGAAGAACTTGCA 59.817 50.000 0.00 0.00 34.59 4.08
353 354 0.312102 GCCAGGTGAAGAACTTGCAC 59.688 55.000 0.00 0.00 34.59 4.57
354 355 1.972872 CCAGGTGAAGAACTTGCACT 58.027 50.000 0.00 0.00 34.59 4.40
355 356 1.605710 CCAGGTGAAGAACTTGCACTG 59.394 52.381 0.00 0.00 34.59 3.66
356 357 1.002033 CAGGTGAAGAACTTGCACTGC 60.002 52.381 0.00 0.00 33.25 4.40
357 358 1.024271 GGTGAAGAACTTGCACTGCA 58.976 50.000 0.00 0.00 36.47 4.41
358 359 1.405105 GGTGAAGAACTTGCACTGCAA 59.595 47.619 15.63 15.63 46.80 4.08
359 360 2.454055 GTGAAGAACTTGCACTGCAAC 58.546 47.619 12.59 3.69 43.99 4.17
360 361 1.063912 TGAAGAACTTGCACTGCAACG 59.936 47.619 12.59 11.07 43.99 4.10
361 362 0.381801 AAGAACTTGCACTGCAACGG 59.618 50.000 12.59 6.88 43.99 4.44
362 363 1.658409 GAACTTGCACTGCAACGGC 60.658 57.895 12.59 1.33 43.99 5.68
363 364 3.468266 AACTTGCACTGCAACGGCG 62.468 57.895 12.59 4.80 43.99 6.46
374 375 4.699522 AACGGCGCCCTGGACTTC 62.700 66.667 23.46 0.00 0.00 3.01
379 380 4.003788 CGCCCTGGACTTCCACGT 62.004 66.667 0.00 0.00 42.01 4.49
380 381 2.642254 CGCCCTGGACTTCCACGTA 61.642 63.158 0.00 0.00 42.01 3.57
381 382 1.675219 GCCCTGGACTTCCACGTAA 59.325 57.895 0.00 0.00 42.01 3.18
382 383 0.035739 GCCCTGGACTTCCACGTAAA 59.964 55.000 0.00 0.00 42.01 2.01
383 384 1.944430 GCCCTGGACTTCCACGTAAAG 60.944 57.143 8.01 8.01 42.01 1.85
384 385 1.346722 CCCTGGACTTCCACGTAAAGT 59.653 52.381 13.61 13.61 42.01 2.66
391 392 4.602340 ACTTCCACGTAAAGTCAGACAT 57.398 40.909 2.66 0.00 31.36 3.06
392 393 5.717078 ACTTCCACGTAAAGTCAGACATA 57.283 39.130 2.66 0.00 31.36 2.29
393 394 5.710984 ACTTCCACGTAAAGTCAGACATAG 58.289 41.667 2.66 0.00 31.36 2.23
394 395 4.713824 TCCACGTAAAGTCAGACATAGG 57.286 45.455 2.66 4.22 0.00 2.57
395 396 3.446161 TCCACGTAAAGTCAGACATAGGG 59.554 47.826 2.66 0.00 0.00 3.53
396 397 3.446161 CCACGTAAAGTCAGACATAGGGA 59.554 47.826 2.66 0.00 0.00 4.20
397 398 4.421948 CACGTAAAGTCAGACATAGGGAC 58.578 47.826 2.66 0.00 0.00 4.46
398 399 4.082408 CACGTAAAGTCAGACATAGGGACA 60.082 45.833 2.66 0.00 34.04 4.02
399 400 4.525487 ACGTAAAGTCAGACATAGGGACAA 59.475 41.667 2.66 0.00 34.04 3.18
400 401 4.863131 CGTAAAGTCAGACATAGGGACAAC 59.137 45.833 2.66 0.00 34.04 3.32
401 402 3.983044 AAGTCAGACATAGGGACAACC 57.017 47.619 2.66 0.00 40.67 3.77
410 411 3.069778 GGGACAACCTCTCCGCTT 58.930 61.111 0.00 0.00 35.85 4.68
411 412 2.283824 GGGACAACCTCTCCGCTTA 58.716 57.895 0.00 0.00 35.85 3.09
412 413 0.831307 GGGACAACCTCTCCGCTTAT 59.169 55.000 0.00 0.00 35.85 1.73
413 414 1.473434 GGGACAACCTCTCCGCTTATG 60.473 57.143 0.00 0.00 35.85 1.90
414 415 1.207329 GGACAACCTCTCCGCTTATGT 59.793 52.381 0.00 0.00 0.00 2.29
415 416 2.271800 GACAACCTCTCCGCTTATGTG 58.728 52.381 0.00 0.00 0.00 3.21
416 417 1.009829 CAACCTCTCCGCTTATGTGC 58.990 55.000 0.00 0.00 0.00 4.57
417 418 0.107654 AACCTCTCCGCTTATGTGCC 60.108 55.000 0.00 0.00 0.00 5.01
418 419 0.978146 ACCTCTCCGCTTATGTGCCT 60.978 55.000 0.00 0.00 0.00 4.75
419 420 0.179000 CCTCTCCGCTTATGTGCCTT 59.821 55.000 0.00 0.00 0.00 4.35
420 421 1.407437 CCTCTCCGCTTATGTGCCTTT 60.407 52.381 0.00 0.00 0.00 3.11
421 422 2.359900 CTCTCCGCTTATGTGCCTTTT 58.640 47.619 0.00 0.00 0.00 2.27
422 423 2.083774 TCTCCGCTTATGTGCCTTTTG 58.916 47.619 0.00 0.00 0.00 2.44
423 424 0.525761 TCCGCTTATGTGCCTTTTGC 59.474 50.000 0.00 0.00 41.77 3.68
424 425 0.458370 CCGCTTATGTGCCTTTTGCC 60.458 55.000 0.00 0.00 40.16 4.52
425 426 0.243365 CGCTTATGTGCCTTTTGCCA 59.757 50.000 0.00 0.00 40.16 4.92
426 427 1.713597 GCTTATGTGCCTTTTGCCAC 58.286 50.000 0.00 0.00 40.16 5.01
427 428 1.981254 CTTATGTGCCTTTTGCCACG 58.019 50.000 0.00 0.00 40.16 4.94
428 429 1.269448 CTTATGTGCCTTTTGCCACGT 59.731 47.619 0.00 0.00 40.16 4.49
429 430 2.186532 TATGTGCCTTTTGCCACGTA 57.813 45.000 0.00 0.00 40.16 3.57
430 431 1.544724 ATGTGCCTTTTGCCACGTAT 58.455 45.000 0.00 0.00 40.16 3.06
441 442 5.906113 TTTGCCACGTATAAAACATCCAT 57.094 34.783 0.00 0.00 0.00 3.41
442 443 7.392494 TTTTGCCACGTATAAAACATCCATA 57.608 32.000 0.00 0.00 0.00 2.74
471 472 1.136057 TCGACGTGTCTTCATCGACAG 60.136 52.381 0.00 0.00 43.94 3.51
473 474 2.662700 GACGTGTCTTCATCGACAGTT 58.337 47.619 0.00 0.00 43.94 3.16
479 480 3.254892 GTCTTCATCGACAGTTTCCCTC 58.745 50.000 0.00 0.00 34.11 4.30
480 481 2.233922 TCTTCATCGACAGTTTCCCTCC 59.766 50.000 0.00 0.00 0.00 4.30
481 482 1.938585 TCATCGACAGTTTCCCTCCT 58.061 50.000 0.00 0.00 0.00 3.69
495 496 8.103935 CAGTTTCCCTCCTAGTTTAGAGAAAAT 58.896 37.037 0.00 0.00 0.00 1.82
545 546 9.887406 TTTACGTGAGAAAGTTCCAATTTATTC 57.113 29.630 0.00 0.00 0.00 1.75
546 547 7.504924 ACGTGAGAAAGTTCCAATTTATTCA 57.495 32.000 0.00 0.00 0.00 2.57
547 548 8.110860 ACGTGAGAAAGTTCCAATTTATTCAT 57.889 30.769 0.00 0.00 0.00 2.57
548 549 8.237267 ACGTGAGAAAGTTCCAATTTATTCATC 58.763 33.333 0.00 0.00 0.00 2.92
549 550 8.454106 CGTGAGAAAGTTCCAATTTATTCATCT 58.546 33.333 0.00 0.00 0.00 2.90
552 553 9.495754 GAGAAAGTTCCAATTTATTCATCTTCG 57.504 33.333 0.00 0.00 0.00 3.79
553 554 9.231297 AGAAAGTTCCAATTTATTCATCTTCGA 57.769 29.630 0.00 0.00 0.00 3.71
554 555 9.278734 GAAAGTTCCAATTTATTCATCTTCGAC 57.721 33.333 0.00 0.00 0.00 4.20
555 556 7.321745 AGTTCCAATTTATTCATCTTCGACC 57.678 36.000 0.00 0.00 0.00 4.79
556 557 6.884295 AGTTCCAATTTATTCATCTTCGACCA 59.116 34.615 0.00 0.00 0.00 4.02
557 558 7.557719 AGTTCCAATTTATTCATCTTCGACCAT 59.442 33.333 0.00 0.00 0.00 3.55
558 559 7.263100 TCCAATTTATTCATCTTCGACCATG 57.737 36.000 0.00 0.00 0.00 3.66
559 560 6.262944 TCCAATTTATTCATCTTCGACCATGG 59.737 38.462 11.19 11.19 0.00 3.66
560 561 5.695851 ATTTATTCATCTTCGACCATGGC 57.304 39.130 13.04 3.65 0.00 4.40
561 562 1.586422 ATTCATCTTCGACCATGGCG 58.414 50.000 13.04 16.58 0.00 5.69
562 563 0.461870 TTCATCTTCGACCATGGCGG 60.462 55.000 22.59 11.61 42.50 6.13
579 580 8.918202 CCATGGCGGTTAAATATGGTATATAT 57.082 34.615 0.00 0.00 34.88 0.86
580 581 9.349713 CCATGGCGGTTAAATATGGTATATATT 57.650 33.333 0.00 0.00 34.88 1.28
582 583 9.914834 ATGGCGGTTAAATATGGTATATATTGT 57.085 29.630 0.00 0.00 0.00 2.71
583 584 9.742144 TGGCGGTTAAATATGGTATATATTGTT 57.258 29.630 0.00 0.00 0.00 2.83
584 585 9.997482 GGCGGTTAAATATGGTATATATTGTTG 57.003 33.333 0.00 0.00 0.00 3.33
612 613 2.695359 TCATCAGTTGAGTAAACCGGC 58.305 47.619 0.00 0.00 39.85 6.13
622 623 2.350804 GAGTAAACCGGCGAGGAAAATC 59.649 50.000 9.30 0.00 45.00 2.17
623 624 2.027469 AGTAAACCGGCGAGGAAAATCT 60.027 45.455 9.30 0.00 45.00 2.40
624 625 1.905637 AAACCGGCGAGGAAAATCTT 58.094 45.000 9.30 0.00 45.00 2.40
625 626 2.773993 AACCGGCGAGGAAAATCTTA 57.226 45.000 9.30 0.00 45.00 2.10
626 627 2.773993 ACCGGCGAGGAAAATCTTAA 57.226 45.000 9.30 0.00 45.00 1.85
714 715 9.009327 GGAACATCATCATACAAAACATAAACG 57.991 33.333 0.00 0.00 0.00 3.60
783 789 0.179171 CAGTACTACGCGTCCACAGG 60.179 60.000 18.63 5.14 0.00 4.00
792 798 1.090052 GCGTCCACAGGATTAGGTGC 61.090 60.000 0.00 0.00 32.73 5.01
800 806 3.260884 CACAGGATTAGGTGCGGGTATAT 59.739 47.826 0.00 0.00 0.00 0.86
822 830 3.126528 CGTACCCAGGACGGATCC 58.873 66.667 0.00 0.00 46.69 3.36
834 842 2.973420 CGGATCCGTCTGCTTAACC 58.027 57.895 26.35 0.00 34.35 2.85
887 915 0.596083 GCCCACGAGTCTGATCATCG 60.596 60.000 14.11 14.11 42.04 3.84
909 937 2.028567 AGGCGGAGAGAAAGTCAGAAAG 60.029 50.000 0.00 0.00 0.00 2.62
910 938 2.028930 GGCGGAGAGAAAGTCAGAAAGA 60.029 50.000 0.00 0.00 0.00 2.52
911 939 3.555168 GGCGGAGAGAAAGTCAGAAAGAA 60.555 47.826 0.00 0.00 0.00 2.52
912 940 4.058817 GCGGAGAGAAAGTCAGAAAGAAA 58.941 43.478 0.00 0.00 0.00 2.52
913 941 4.511826 GCGGAGAGAAAGTCAGAAAGAAAA 59.488 41.667 0.00 0.00 0.00 2.29
914 942 5.333721 GCGGAGAGAAAGTCAGAAAGAAAAG 60.334 44.000 0.00 0.00 0.00 2.27
960 1004 2.405594 CGCTTCCTCCTCTCGTCG 59.594 66.667 0.00 0.00 0.00 5.12
1044 1092 2.562912 CGCATGCTCCACACCAAC 59.437 61.111 17.13 0.00 0.00 3.77
1045 1093 2.260154 CGCATGCTCCACACCAACA 61.260 57.895 17.13 0.00 0.00 3.33
1046 1094 1.582968 GCATGCTCCACACCAACAG 59.417 57.895 11.37 0.00 0.00 3.16
1214 1271 0.868406 AAGCTGCTGTACGTTCTTGC 59.132 50.000 1.35 0.00 0.00 4.01
1215 1272 1.130613 GCTGCTGTACGTTCTTGCG 59.869 57.895 0.00 0.00 37.94 4.85
1217 1274 0.161658 CTGCTGTACGTTCTTGCGTG 59.838 55.000 0.00 0.00 45.33 5.34
1229 1286 1.202486 TCTTGCGTGTTCCTTCTTCGT 60.202 47.619 0.00 0.00 0.00 3.85
1231 1288 0.387929 TGCGTGTTCCTTCTTCGTCT 59.612 50.000 0.00 0.00 0.00 4.18
1235 1292 2.864343 CGTGTTCCTTCTTCGTCTGTTT 59.136 45.455 0.00 0.00 0.00 2.83
1241 1298 4.543692 TCCTTCTTCGTCTGTTTTCTACG 58.456 43.478 0.00 0.00 37.96 3.51
1262 1335 2.383442 ACATGTAGATCTAGGCCCGT 57.617 50.000 1.64 0.00 0.00 5.28
1320 1393 2.809601 CCTCGTTCCAAGGCGACG 60.810 66.667 8.05 8.05 38.09 5.12
1369 1484 4.568152 TCGATGCTCATTTCGATCTGTA 57.432 40.909 0.00 0.00 39.29 2.74
1370 1485 4.290969 TCGATGCTCATTTCGATCTGTAC 58.709 43.478 0.00 0.00 39.29 2.90
1371 1486 4.036852 TCGATGCTCATTTCGATCTGTACT 59.963 41.667 0.00 0.00 39.29 2.73
1376 1491 4.437239 CTCATTTCGATCTGTACTTGGCT 58.563 43.478 0.00 0.00 0.00 4.75
1525 1644 1.503347 ACCACCAACCCTTCCTCATTT 59.497 47.619 0.00 0.00 0.00 2.32
1536 1655 4.411013 CCTTCCTCATTTTCCACCTCTTT 58.589 43.478 0.00 0.00 0.00 2.52
1540 1659 7.148000 CCTTCCTCATTTTCCACCTCTTTAATC 60.148 40.741 0.00 0.00 0.00 1.75
1551 1670 7.658261 TCCACCTCTTTAATCAGTATACATCG 58.342 38.462 5.50 0.00 0.00 3.84
1566 1685 0.587242 CATCGCACCGCATTTCTTCG 60.587 55.000 0.00 0.00 0.00 3.79
1653 1772 4.426416 TCGATTGTCAAATACTACCACCG 58.574 43.478 0.00 0.00 0.00 4.94
1685 1804 0.681887 TGTGCATTGGAGCCATCCTG 60.682 55.000 0.00 0.00 46.80 3.86
1740 1859 6.741109 TGGATGATATGTGATTCATTGCAAC 58.259 36.000 0.00 0.00 37.91 4.17
1755 1874 5.236263 TCATTGCAACACCACGCTTATATAG 59.764 40.000 0.00 0.00 0.00 1.31
1761 1880 6.645415 GCAACACCACGCTTATATAGATACTT 59.355 38.462 0.00 0.00 0.00 2.24
1763 1882 6.688578 ACACCACGCTTATATAGATACTTGG 58.311 40.000 0.00 0.00 0.00 3.61
1804 1923 2.508526 CCCCTGTTCTAAGCATATGCC 58.491 52.381 23.96 8.19 43.38 4.40
1833 1984 9.736023 GTTTATTTAAGAATCAAGTATGCCTGG 57.264 33.333 0.00 0.00 0.00 4.45
1836 1987 3.567478 AGAATCAAGTATGCCTGGTCC 57.433 47.619 0.00 0.00 0.00 4.46
1849 2000 6.906157 ATGCCTGGTCCTTTATGATATTTG 57.094 37.500 0.00 0.00 0.00 2.32
1852 2003 7.068702 TGCCTGGTCCTTTATGATATTTGATT 58.931 34.615 0.00 0.00 0.00 2.57
1854 2005 9.077885 GCCTGGTCCTTTATGATATTTGATTAA 57.922 33.333 0.00 0.00 0.00 1.40
1930 2081 1.284785 TGGGTTGATGAGGTCATTCCC 59.715 52.381 15.77 15.77 44.62 3.97
2020 2171 1.324740 TGCCGTAAGTCATACCCGCT 61.325 55.000 0.00 0.00 30.97 5.52
2025 2176 2.098607 CGTAAGTCATACCCGCTCAAGA 59.901 50.000 0.00 0.00 0.00 3.02
2158 2318 6.058833 TGTAAGTTTGCATCTCCACAACTAA 58.941 36.000 0.00 0.00 0.00 2.24
2166 2326 7.967890 TGCATCTCCACAACTAATATATGTG 57.032 36.000 0.00 0.00 43.10 3.21
2186 2346 1.521423 GGATCGACGGCGTTATCTTTG 59.479 52.381 25.45 5.32 38.98 2.77
2404 2564 4.093408 CACATTTCTGATGACACCTAACCG 59.907 45.833 0.00 0.00 0.00 4.44
2405 2565 4.020573 ACATTTCTGATGACACCTAACCGA 60.021 41.667 0.00 0.00 0.00 4.69
2406 2566 3.587797 TTCTGATGACACCTAACCGAC 57.412 47.619 0.00 0.00 0.00 4.79
2407 2567 1.822990 TCTGATGACACCTAACCGACC 59.177 52.381 0.00 0.00 0.00 4.79
2412 2572 0.683412 GACACCTAACCGACCAACCT 59.317 55.000 0.00 0.00 0.00 3.50
2435 2596 3.564235 TTTTGCGACGAGTAGAGCTTA 57.436 42.857 0.00 0.00 0.00 3.09
2518 2695 4.830600 CCCAGGTAATAACTTGTGTTGGTT 59.169 41.667 0.00 0.00 37.59 3.67
2617 2795 1.103398 AAGGTAATCAGCCATGCGCC 61.103 55.000 4.18 0.00 38.78 6.53
2929 3109 5.906113 TCAGGAGAAAGAGACATACTGAC 57.094 43.478 0.00 0.00 0.00 3.51
2933 3119 4.335874 GGAGAAAGAGACATACTGACGCTA 59.664 45.833 0.00 0.00 0.00 4.26
2938 3124 5.584253 AGAGACATACTGACGCTATTGTT 57.416 39.130 0.00 0.00 0.00 2.83
2984 3178 0.106116 GGACCGGATACAGGAGAGGT 60.106 60.000 9.46 0.00 34.83 3.85
3068 3262 4.982241 TGATCTTTCAGACCAGGTCTTT 57.018 40.909 20.57 0.00 41.37 2.52
3112 3307 4.664389 CGAGAAAGCGAGAAGTTGTTTAGC 60.664 45.833 0.00 0.00 0.00 3.09
3145 3340 1.913778 TGGAATGTGATGCTTGTGCT 58.086 45.000 0.00 0.00 40.48 4.40
3189 3384 8.752005 AGCTGAGCAAATCCTTTGTATTATTA 57.248 30.769 7.39 0.00 42.56 0.98
3190 3385 9.359653 AGCTGAGCAAATCCTTTGTATTATTAT 57.640 29.630 7.39 0.00 42.56 1.28
3191 3386 9.971922 GCTGAGCAAATCCTTTGTATTATTATT 57.028 29.630 0.00 0.00 42.56 1.40
3233 3442 1.599071 GAGGATGTGTGTGTGTGTGTG 59.401 52.381 0.00 0.00 0.00 3.82
3273 3482 5.163571 ACGCAGATATGATGTCTATAGCAGG 60.164 44.000 0.00 0.00 0.00 4.85
3275 3484 5.362143 GCAGATATGATGTCTATAGCAGGGA 59.638 44.000 0.00 0.00 0.00 4.20
3292 3505 2.654912 GACGTTTGGTGTCGAGCGG 61.655 63.158 0.00 0.00 35.66 5.52
3325 3542 5.568620 ATGTGGAGAGAGTTTTGTTACCT 57.431 39.130 0.00 0.00 0.00 3.08
3327 3544 5.123227 TGTGGAGAGAGTTTTGTTACCTTG 58.877 41.667 0.00 0.00 0.00 3.61
3328 3545 5.104693 TGTGGAGAGAGTTTTGTTACCTTGA 60.105 40.000 0.00 0.00 0.00 3.02
3330 3547 6.147985 GTGGAGAGAGTTTTGTTACCTTGATC 59.852 42.308 0.00 0.00 0.00 2.92
3331 3548 6.043243 TGGAGAGAGTTTTGTTACCTTGATCT 59.957 38.462 0.00 0.00 0.00 2.75
3348 3566 6.825721 CCTTGATCTTTGTAGGCTGTATCTTT 59.174 38.462 0.00 0.00 0.00 2.52
3380 3598 7.502226 TGAGAGAAAAGAAGTTGCTCCATTTTA 59.498 33.333 0.00 0.00 0.00 1.52
3381 3599 8.237811 AGAGAAAAGAAGTTGCTCCATTTTAA 57.762 30.769 0.00 0.00 0.00 1.52
3394 3613 5.009110 GCTCCATTTTAAGGCTTACTCCATC 59.991 44.000 6.43 0.00 0.00 3.51
3425 3644 5.059833 GGGAGCACAAGATTAAGACCATAG 58.940 45.833 0.00 0.00 0.00 2.23
3426 3645 4.513318 GGAGCACAAGATTAAGACCATAGC 59.487 45.833 0.00 0.00 0.00 2.97
3427 3646 5.363939 GAGCACAAGATTAAGACCATAGCT 58.636 41.667 0.00 0.00 0.00 3.32
3428 3647 5.749462 AGCACAAGATTAAGACCATAGCTT 58.251 37.500 0.00 0.00 0.00 3.74
3457 3676 3.278574 TGTAACCCATCAAGTATGCTGC 58.721 45.455 0.00 0.00 33.92 5.25
3467 3686 5.772825 TCAAGTATGCTGCTGTTTTTCTT 57.227 34.783 0.00 0.00 0.00 2.52
3468 3687 6.147864 TCAAGTATGCTGCTGTTTTTCTTT 57.852 33.333 0.00 0.00 0.00 2.52
3469 3688 6.572519 TCAAGTATGCTGCTGTTTTTCTTTT 58.427 32.000 0.00 0.00 0.00 2.27
3470 3689 6.697019 TCAAGTATGCTGCTGTTTTTCTTTTC 59.303 34.615 0.00 0.00 0.00 2.29
3471 3690 6.396829 AGTATGCTGCTGTTTTTCTTTTCT 57.603 33.333 0.00 0.00 0.00 2.52
3472 3691 6.809869 AGTATGCTGCTGTTTTTCTTTTCTT 58.190 32.000 0.00 0.00 0.00 2.52
3473 3692 7.267857 AGTATGCTGCTGTTTTTCTTTTCTTT 58.732 30.769 0.00 0.00 0.00 2.52
3474 3693 6.990341 ATGCTGCTGTTTTTCTTTTCTTTT 57.010 29.167 0.00 0.00 0.00 2.27
3475 3694 6.799926 TGCTGCTGTTTTTCTTTTCTTTTT 57.200 29.167 0.00 0.00 0.00 1.94
3522 3741 1.134946 GTTGGTGTTGAACAGCTGCTT 59.865 47.619 25.31 7.47 46.03 3.91
3532 3751 0.959372 ACAGCTGCTTCACATGGAGC 60.959 55.000 15.27 5.11 46.86 4.70
3533 3752 4.315588 GCTGCTTCACATGGAGCT 57.684 55.556 13.30 0.00 43.88 4.09
3543 3762 1.817357 ACATGGAGCTGTGATGTGTG 58.183 50.000 0.00 0.00 0.00 3.82
3544 3763 0.450583 CATGGAGCTGTGATGTGTGC 59.549 55.000 0.00 0.00 0.00 4.57
3545 3764 0.327259 ATGGAGCTGTGATGTGTGCT 59.673 50.000 0.00 0.00 38.59 4.40
3546 3765 0.604511 TGGAGCTGTGATGTGTGCTG 60.605 55.000 0.00 0.00 35.76 4.41
3547 3766 1.303799 GGAGCTGTGATGTGTGCTGG 61.304 60.000 0.00 0.00 35.76 4.85
3548 3767 1.919956 GAGCTGTGATGTGTGCTGGC 61.920 60.000 0.00 0.00 35.76 4.85
3549 3768 2.986306 GCTGTGATGTGTGCTGGCC 61.986 63.158 0.00 0.00 0.00 5.36
3577 3796 2.353610 CCCTGCTGAATGGCAACCC 61.354 63.158 0.00 0.00 41.94 4.11
3609 3828 1.674057 CGGATACATCCTGGCCTCC 59.326 63.158 3.32 0.00 44.93 4.30
3627 3846 1.226974 CGACTCCTGGCCACATACG 60.227 63.158 0.00 0.23 0.00 3.06
3636 3855 2.885676 GCCACATACGCCTGCATCG 61.886 63.158 6.92 6.92 0.00 3.84
3682 3908 3.506096 CGCATCAGTGGCAGCCAG 61.506 66.667 16.83 3.93 32.34 4.85
3763 3989 2.743928 GCCGCGATGATGGGGATC 60.744 66.667 8.23 0.00 44.30 3.36
3928 4154 0.394080 ATTCTTGCTGCAGCTCCTCC 60.394 55.000 36.61 10.03 42.66 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.775629 TGGAGTGGCATTTATCTAATTAACCC 59.224 38.462 0.00 0.00 0.00 4.11
1 2 7.817418 TGGAGTGGCATTTATCTAATTAACC 57.183 36.000 0.00 0.00 0.00 2.85
6 7 9.028284 CCATAATTGGAGTGGCATTTATCTAAT 57.972 33.333 0.00 0.00 46.92 1.73
7 8 8.408043 CCATAATTGGAGTGGCATTTATCTAA 57.592 34.615 0.00 0.00 46.92 2.10
9 10 6.906157 CCATAATTGGAGTGGCATTTATCT 57.094 37.500 0.00 0.00 46.92 1.98
18 19 3.213506 TGAATCGCCATAATTGGAGTGG 58.786 45.455 0.00 0.00 46.92 4.00
19 20 6.558771 TTATGAATCGCCATAATTGGAGTG 57.441 37.500 0.00 0.00 46.92 3.51
20 21 7.581213 TTTTATGAATCGCCATAATTGGAGT 57.419 32.000 0.00 0.00 46.92 3.85
21 22 8.918658 CATTTTTATGAATCGCCATAATTGGAG 58.081 33.333 0.00 0.00 46.92 3.86
22 23 7.384660 GCATTTTTATGAATCGCCATAATTGGA 59.615 33.333 0.00 0.00 46.92 3.53
23 24 7.360269 GGCATTTTTATGAATCGCCATAATTGG 60.360 37.037 0.00 0.00 46.66 3.16
24 25 7.512297 GGCATTTTTATGAATCGCCATAATTG 58.488 34.615 0.00 0.00 38.40 2.32
25 26 6.365789 CGGCATTTTTATGAATCGCCATAATT 59.634 34.615 0.00 0.00 38.40 1.40
26 27 5.863397 CGGCATTTTTATGAATCGCCATAAT 59.137 36.000 0.00 0.00 38.40 1.28
27 28 5.218885 CGGCATTTTTATGAATCGCCATAA 58.781 37.500 0.00 0.00 37.26 1.90
28 29 4.793071 CGGCATTTTTATGAATCGCCATA 58.207 39.130 0.00 0.00 35.12 2.74
29 30 3.641648 CGGCATTTTTATGAATCGCCAT 58.358 40.909 0.00 0.00 35.12 4.40
30 31 2.797792 GCGGCATTTTTATGAATCGCCA 60.798 45.455 0.00 0.00 35.12 5.69
31 32 1.786579 GCGGCATTTTTATGAATCGCC 59.213 47.619 0.00 0.00 34.01 5.54
32 33 2.458951 TGCGGCATTTTTATGAATCGC 58.541 42.857 0.00 0.00 37.44 4.58
33 34 2.468777 GCTGCGGCATTTTTATGAATCG 59.531 45.455 14.08 0.00 38.54 3.34
34 35 3.446799 TGCTGCGGCATTTTTATGAATC 58.553 40.909 18.37 0.00 44.28 2.52
35 36 3.523606 TGCTGCGGCATTTTTATGAAT 57.476 38.095 18.37 0.00 44.28 2.57
47 48 1.501169 AGTTTGAAAATTGCTGCGGC 58.499 45.000 11.65 11.65 39.26 6.53
48 49 3.555139 TCAAAGTTTGAAAATTGCTGCGG 59.445 39.130 15.92 0.00 36.59 5.69
49 50 4.775440 TCAAAGTTTGAAAATTGCTGCG 57.225 36.364 15.92 0.00 36.59 5.18
58 59 6.622462 GCAGTGGCATTTTTCAAAGTTTGAAA 60.622 34.615 30.77 30.77 46.92 2.69
59 60 5.163774 GCAGTGGCATTTTTCAAAGTTTGAA 60.164 36.000 23.91 23.91 43.03 2.69
60 61 4.332268 GCAGTGGCATTTTTCAAAGTTTGA 59.668 37.500 14.35 14.35 40.72 2.69
61 62 4.590226 GCAGTGGCATTTTTCAAAGTTTG 58.410 39.130 9.44 9.44 40.72 2.93
62 63 4.880886 GCAGTGGCATTTTTCAAAGTTT 57.119 36.364 0.00 0.00 40.72 2.66
83 84 7.990672 ACGTTTTTCAAAGTTTGCAAAAATTG 58.009 26.923 22.13 22.79 37.48 2.32
84 85 7.857885 TGACGTTTTTCAAAGTTTGCAAAAATT 59.142 25.926 22.13 14.42 37.48 1.82
85 86 7.322461 GTGACGTTTTTCAAAGTTTGCAAAAAT 59.678 29.630 22.13 15.57 37.48 1.82
86 87 6.629252 GTGACGTTTTTCAAAGTTTGCAAAAA 59.371 30.769 22.13 21.83 37.48 1.94
87 88 6.018669 AGTGACGTTTTTCAAAGTTTGCAAAA 60.019 30.769 18.29 18.29 34.31 2.44
88 89 5.463724 AGTGACGTTTTTCAAAGTTTGCAAA 59.536 32.000 8.05 8.05 0.00 3.68
89 90 4.985409 AGTGACGTTTTTCAAAGTTTGCAA 59.015 33.333 10.90 3.49 0.00 4.08
90 91 4.384247 CAGTGACGTTTTTCAAAGTTTGCA 59.616 37.500 10.90 0.00 0.00 4.08
91 92 4.720946 GCAGTGACGTTTTTCAAAGTTTGC 60.721 41.667 10.90 0.00 0.00 3.68
92 93 4.384247 TGCAGTGACGTTTTTCAAAGTTTG 59.616 37.500 9.44 9.44 0.00 2.93
93 94 4.551388 TGCAGTGACGTTTTTCAAAGTTT 58.449 34.783 0.00 0.00 0.00 2.66
94 95 4.083003 TCTGCAGTGACGTTTTTCAAAGTT 60.083 37.500 14.67 0.00 0.00 2.66
95 96 3.438781 TCTGCAGTGACGTTTTTCAAAGT 59.561 39.130 14.67 0.00 0.00 2.66
96 97 3.786048 GTCTGCAGTGACGTTTTTCAAAG 59.214 43.478 14.67 0.00 0.00 2.77
97 98 3.438781 AGTCTGCAGTGACGTTTTTCAAA 59.561 39.130 14.67 0.00 41.47 2.69
98 99 3.006940 AGTCTGCAGTGACGTTTTTCAA 58.993 40.909 14.67 0.00 41.47 2.69
99 100 2.627945 AGTCTGCAGTGACGTTTTTCA 58.372 42.857 14.67 0.00 41.47 2.69
100 101 3.608456 GAAGTCTGCAGTGACGTTTTTC 58.392 45.455 14.67 2.24 41.47 2.29
101 102 2.030457 CGAAGTCTGCAGTGACGTTTTT 59.970 45.455 14.67 0.00 41.47 1.94
102 103 1.593006 CGAAGTCTGCAGTGACGTTTT 59.407 47.619 14.67 0.00 41.47 2.43
103 104 1.202371 TCGAAGTCTGCAGTGACGTTT 60.202 47.619 14.67 0.00 41.47 3.60
104 105 0.384309 TCGAAGTCTGCAGTGACGTT 59.616 50.000 14.67 2.48 41.47 3.99
105 106 0.384309 TTCGAAGTCTGCAGTGACGT 59.616 50.000 14.67 3.72 41.47 4.34
106 107 1.453524 CTTTCGAAGTCTGCAGTGACG 59.546 52.381 14.67 14.79 41.47 4.35
107 108 2.743938 TCTTTCGAAGTCTGCAGTGAC 58.256 47.619 14.67 5.73 37.23 3.67
108 109 3.320626 CATCTTTCGAAGTCTGCAGTGA 58.679 45.455 14.67 2.60 0.00 3.41
109 110 2.159734 GCATCTTTCGAAGTCTGCAGTG 60.160 50.000 14.67 0.65 37.81 3.66
110 111 2.072298 GCATCTTTCGAAGTCTGCAGT 58.928 47.619 14.67 0.00 37.81 4.40
111 112 1.396301 GGCATCTTTCGAAGTCTGCAG 59.604 52.381 21.58 7.63 38.83 4.41
112 113 1.270785 TGGCATCTTTCGAAGTCTGCA 60.271 47.619 21.58 10.70 38.83 4.41
113 114 1.129437 GTGGCATCTTTCGAAGTCTGC 59.871 52.381 15.47 15.47 37.45 4.26
114 115 2.414481 CAGTGGCATCTTTCGAAGTCTG 59.586 50.000 0.00 0.00 0.00 3.51
115 116 2.300152 TCAGTGGCATCTTTCGAAGTCT 59.700 45.455 0.00 0.00 0.00 3.24
116 117 2.688507 TCAGTGGCATCTTTCGAAGTC 58.311 47.619 0.00 0.00 0.00 3.01
117 118 2.839486 TCAGTGGCATCTTTCGAAGT 57.161 45.000 0.00 0.00 0.00 3.01
118 119 4.488126 TTTTCAGTGGCATCTTTCGAAG 57.512 40.909 0.00 0.00 0.00 3.79
119 120 4.321156 CCATTTTCAGTGGCATCTTTCGAA 60.321 41.667 0.00 0.00 0.00 3.71
120 121 3.191162 CCATTTTCAGTGGCATCTTTCGA 59.809 43.478 0.00 0.00 0.00 3.71
121 122 3.504863 CCATTTTCAGTGGCATCTTTCG 58.495 45.455 0.00 0.00 0.00 3.46
130 131 5.106475 CCATTTTTCATGCCATTTTCAGTGG 60.106 40.000 0.00 0.00 39.80 4.00
131 132 5.618195 GCCATTTTTCATGCCATTTTCAGTG 60.618 40.000 0.00 0.00 0.00 3.66
132 133 4.456566 GCCATTTTTCATGCCATTTTCAGT 59.543 37.500 0.00 0.00 0.00 3.41
133 134 4.456222 TGCCATTTTTCATGCCATTTTCAG 59.544 37.500 0.00 0.00 0.00 3.02
134 135 4.395625 TGCCATTTTTCATGCCATTTTCA 58.604 34.783 0.00 0.00 0.00 2.69
135 136 5.570234 ATGCCATTTTTCATGCCATTTTC 57.430 34.783 0.00 0.00 0.00 2.29
136 137 5.986501 AATGCCATTTTTCATGCCATTTT 57.013 30.435 0.00 0.00 0.00 1.82
137 138 5.986501 AAATGCCATTTTTCATGCCATTT 57.013 30.435 0.00 0.00 0.00 2.32
138 139 5.986501 AAAATGCCATTTTTCATGCCATT 57.013 30.435 9.57 0.00 39.28 3.16
139 140 5.986501 AAAAATGCCATTTTTCATGCCAT 57.013 30.435 19.72 0.00 46.33 4.40
159 160 6.622462 GCCACTGCAATTTTCAAACTTTGAAA 60.622 34.615 20.92 20.92 45.82 2.69
160 161 5.163774 GCCACTGCAATTTTCAAACTTTGAA 60.164 36.000 12.12 12.12 41.71 2.69
161 162 4.332268 GCCACTGCAATTTTCAAACTTTGA 59.668 37.500 0.00 0.00 36.10 2.69
162 163 4.094590 TGCCACTGCAATTTTCAAACTTTG 59.905 37.500 0.00 0.00 46.66 2.77
163 164 4.260170 TGCCACTGCAATTTTCAAACTTT 58.740 34.783 0.00 0.00 46.66 2.66
164 165 3.871485 TGCCACTGCAATTTTCAAACTT 58.129 36.364 0.00 0.00 46.66 2.66
165 166 3.540314 TGCCACTGCAATTTTCAAACT 57.460 38.095 0.00 0.00 46.66 2.66
177 178 1.064654 GATTCCGAGAAATGCCACTGC 59.935 52.381 0.00 0.00 38.26 4.40
178 179 1.328680 CGATTCCGAGAAATGCCACTG 59.671 52.381 0.00 0.00 38.22 3.66
179 180 1.656652 CGATTCCGAGAAATGCCACT 58.343 50.000 0.00 0.00 38.22 4.00
180 181 0.028110 GCGATTCCGAGAAATGCCAC 59.972 55.000 0.00 0.00 38.22 5.01
181 182 1.095228 GGCGATTCCGAGAAATGCCA 61.095 55.000 18.69 0.00 40.66 4.92
182 183 1.095228 TGGCGATTCCGAGAAATGCC 61.095 55.000 17.65 17.65 41.33 4.40
183 184 0.305922 CTGGCGATTCCGAGAAATGC 59.694 55.000 0.00 0.00 38.22 3.56
184 185 1.939974 TCTGGCGATTCCGAGAAATG 58.060 50.000 0.00 0.00 38.22 2.32
185 186 2.918712 ATCTGGCGATTCCGAGAAAT 57.081 45.000 0.00 0.00 38.22 2.17
186 187 2.677836 CAAATCTGGCGATTCCGAGAAA 59.322 45.455 5.33 0.00 38.89 2.52
187 188 2.279741 CAAATCTGGCGATTCCGAGAA 58.720 47.619 5.33 0.00 38.89 2.87
188 189 1.473257 CCAAATCTGGCGATTCCGAGA 60.473 52.381 5.33 0.00 38.89 4.04
189 190 0.940126 CCAAATCTGGCGATTCCGAG 59.060 55.000 5.33 0.00 38.89 4.63
190 191 0.539518 TCCAAATCTGGCGATTCCGA 59.460 50.000 5.33 2.58 43.17 4.55
191 192 0.940126 CTCCAAATCTGGCGATTCCG 59.060 55.000 5.33 0.00 43.17 4.30
192 193 1.672881 CACTCCAAATCTGGCGATTCC 59.327 52.381 5.33 0.00 43.17 3.01
193 194 2.352960 GTCACTCCAAATCTGGCGATTC 59.647 50.000 5.33 0.00 43.17 2.52
194 195 2.290260 TGTCACTCCAAATCTGGCGATT 60.290 45.455 0.00 0.00 43.17 3.34
195 196 1.278985 TGTCACTCCAAATCTGGCGAT 59.721 47.619 0.00 0.00 43.17 4.58
196 197 0.684535 TGTCACTCCAAATCTGGCGA 59.315 50.000 0.00 0.00 43.17 5.54
197 198 1.742761 ATGTCACTCCAAATCTGGCG 58.257 50.000 0.00 0.00 43.17 5.69
198 199 3.256631 ACAAATGTCACTCCAAATCTGGC 59.743 43.478 0.00 0.00 43.17 4.85
199 200 5.051891 GACAAATGTCACTCCAAATCTGG 57.948 43.478 8.63 0.00 44.18 3.86
210 211 7.494298 AACAAGGGTTAATTTGACAAATGTCAC 59.506 33.333 15.42 10.50 44.15 3.67
211 212 7.493971 CAACAAGGGTTAATTTGACAAATGTCA 59.506 33.333 14.05 12.03 43.43 3.58
212 213 7.494298 ACAACAAGGGTTAATTTGACAAATGTC 59.506 33.333 14.05 6.60 39.39 3.06
213 214 7.334858 ACAACAAGGGTTAATTTGACAAATGT 58.665 30.769 14.05 4.18 34.87 2.71
214 215 7.784633 ACAACAAGGGTTAATTTGACAAATG 57.215 32.000 14.05 3.57 34.87 2.32
215 216 8.800370 AAACAACAAGGGTTAATTTGACAAAT 57.200 26.923 7.62 7.62 34.87 2.32
216 217 7.878127 TGAAACAACAAGGGTTAATTTGACAAA 59.122 29.630 2.48 2.48 34.87 2.83
217 218 7.332182 GTGAAACAACAAGGGTTAATTTGACAA 59.668 33.333 4.86 0.00 33.04 3.18
218 219 6.814146 GTGAAACAACAAGGGTTAATTTGACA 59.186 34.615 4.86 0.00 33.04 3.58
219 220 7.010091 CAGTGAAACAACAAGGGTTAATTTGAC 59.990 37.037 4.86 0.00 41.43 3.18
220 221 7.038659 CAGTGAAACAACAAGGGTTAATTTGA 58.961 34.615 4.86 0.00 41.43 2.69
221 222 6.238076 GCAGTGAAACAACAAGGGTTAATTTG 60.238 38.462 0.00 0.00 41.43 2.32
222 223 5.815222 GCAGTGAAACAACAAGGGTTAATTT 59.185 36.000 0.00 0.00 41.43 1.82
223 224 5.356426 GCAGTGAAACAACAAGGGTTAATT 58.644 37.500 0.00 0.00 41.43 1.40
224 225 4.499019 CGCAGTGAAACAACAAGGGTTAAT 60.499 41.667 0.00 0.00 41.43 1.40
225 226 3.181495 CGCAGTGAAACAACAAGGGTTAA 60.181 43.478 0.00 0.00 41.43 2.01
226 227 2.356382 CGCAGTGAAACAACAAGGGTTA 59.644 45.455 0.00 0.00 41.43 2.85
227 228 1.134175 CGCAGTGAAACAACAAGGGTT 59.866 47.619 0.00 0.00 41.43 4.11
228 229 0.738389 CGCAGTGAAACAACAAGGGT 59.262 50.000 0.00 0.00 41.43 4.34
229 230 0.738389 ACGCAGTGAAACAACAAGGG 59.262 50.000 0.00 0.00 42.51 3.95
230 231 2.559998 AACGCAGTGAAACAACAAGG 57.440 45.000 0.00 0.00 45.00 3.61
231 232 3.482110 GCTTAACGCAGTGAAACAACAAG 59.518 43.478 0.00 0.00 45.00 3.16
232 233 3.119814 TGCTTAACGCAGTGAAACAACAA 60.120 39.130 0.00 0.00 45.00 2.83
233 234 2.420372 TGCTTAACGCAGTGAAACAACA 59.580 40.909 0.00 0.00 45.00 3.33
234 235 3.059634 TGCTTAACGCAGTGAAACAAC 57.940 42.857 0.00 0.00 45.00 3.32
245 246 1.067693 GCCCATTTTGTGCTTAACGC 58.932 50.000 0.00 0.00 39.77 4.84
246 247 2.430546 TGCCCATTTTGTGCTTAACG 57.569 45.000 0.00 0.00 0.00 3.18
247 248 3.924144 TCATGCCCATTTTGTGCTTAAC 58.076 40.909 0.00 0.00 0.00 2.01
248 249 4.613925 TTCATGCCCATTTTGTGCTTAA 57.386 36.364 0.00 0.00 0.00 1.85
249 250 4.467082 AGATTCATGCCCATTTTGTGCTTA 59.533 37.500 0.00 0.00 0.00 3.09
250 251 3.262405 AGATTCATGCCCATTTTGTGCTT 59.738 39.130 0.00 0.00 0.00 3.91
251 252 2.835764 AGATTCATGCCCATTTTGTGCT 59.164 40.909 0.00 0.00 0.00 4.40
252 253 3.255969 AGATTCATGCCCATTTTGTGC 57.744 42.857 0.00 0.00 0.00 4.57
253 254 4.628333 GTCAAGATTCATGCCCATTTTGTG 59.372 41.667 0.00 0.00 0.00 3.33
254 255 4.618927 CGTCAAGATTCATGCCCATTTTGT 60.619 41.667 0.00 0.00 0.00 2.83
255 256 3.861113 CGTCAAGATTCATGCCCATTTTG 59.139 43.478 0.00 0.00 0.00 2.44
256 257 3.676873 GCGTCAAGATTCATGCCCATTTT 60.677 43.478 0.00 0.00 0.00 1.82
257 258 2.159198 GCGTCAAGATTCATGCCCATTT 60.159 45.455 0.00 0.00 0.00 2.32
258 259 1.406539 GCGTCAAGATTCATGCCCATT 59.593 47.619 0.00 0.00 0.00 3.16
259 260 1.027357 GCGTCAAGATTCATGCCCAT 58.973 50.000 0.00 0.00 0.00 4.00
260 261 1.368345 CGCGTCAAGATTCATGCCCA 61.368 55.000 0.00 0.00 0.00 5.36
261 262 1.353103 CGCGTCAAGATTCATGCCC 59.647 57.895 0.00 0.00 0.00 5.36
262 263 1.353103 CCGCGTCAAGATTCATGCC 59.647 57.895 4.92 0.00 0.00 4.40
263 264 1.297893 GCCGCGTCAAGATTCATGC 60.298 57.895 4.92 0.00 0.00 4.06
264 265 0.447406 TTGCCGCGTCAAGATTCATG 59.553 50.000 4.92 0.00 0.00 3.07
265 266 0.447801 GTTGCCGCGTCAAGATTCAT 59.552 50.000 1.32 0.00 0.00 2.57
266 267 1.573829 GGTTGCCGCGTCAAGATTCA 61.574 55.000 1.32 0.00 0.00 2.57
267 268 1.134694 GGTTGCCGCGTCAAGATTC 59.865 57.895 1.32 0.00 0.00 2.52
268 269 2.332654 GGGTTGCCGCGTCAAGATT 61.333 57.895 1.32 0.00 0.00 2.40
269 270 2.746277 GGGTTGCCGCGTCAAGAT 60.746 61.111 1.32 0.00 0.00 2.40
281 282 2.742372 CTCGCTTGACGGGGGTTG 60.742 66.667 0.00 0.00 43.89 3.77
288 289 2.870161 CGACCGACTCGCTTGACG 60.870 66.667 0.00 0.00 45.62 4.35
289 290 2.504244 CCGACCGACTCGCTTGAC 60.504 66.667 0.00 0.00 41.46 3.18
290 291 2.670592 TCCGACCGACTCGCTTGA 60.671 61.111 0.00 0.00 41.46 3.02
291 292 2.504244 GTCCGACCGACTCGCTTG 60.504 66.667 0.00 0.00 41.46 4.01
292 293 4.099170 CGTCCGACCGACTCGCTT 62.099 66.667 0.00 0.00 41.46 4.68
294 295 4.808238 GACGTCCGACCGACTCGC 62.808 72.222 3.51 0.00 41.46 5.03
295 296 4.157958 GGACGTCCGACCGACTCG 62.158 72.222 20.85 0.00 39.56 4.18
296 297 2.620112 TTGGACGTCCGACCGACTC 61.620 63.158 28.70 2.88 39.56 3.36
297 298 2.595463 TTGGACGTCCGACCGACT 60.595 61.111 28.70 0.00 39.56 4.18
298 299 2.429739 GTTGGACGTCCGACCGAC 60.430 66.667 35.90 21.62 43.26 4.79
303 304 1.259609 AATAGGTGTTGGACGTCCGA 58.740 50.000 28.70 25.14 39.43 4.55
304 305 1.997606 GAAATAGGTGTTGGACGTCCG 59.002 52.381 28.70 0.00 39.43 4.79
305 306 3.329929 AGAAATAGGTGTTGGACGTCC 57.670 47.619 28.17 28.17 0.00 4.79
306 307 6.674760 GCATTAAGAAATAGGTGTTGGACGTC 60.675 42.308 7.13 7.13 0.00 4.34
307 308 5.123344 GCATTAAGAAATAGGTGTTGGACGT 59.877 40.000 0.00 0.00 0.00 4.34
308 309 5.448632 GGCATTAAGAAATAGGTGTTGGACG 60.449 44.000 0.00 0.00 0.00 4.79
309 310 5.417580 TGGCATTAAGAAATAGGTGTTGGAC 59.582 40.000 0.00 0.00 0.00 4.02
310 311 5.575157 TGGCATTAAGAAATAGGTGTTGGA 58.425 37.500 0.00 0.00 0.00 3.53
311 312 5.679638 GCTGGCATTAAGAAATAGGTGTTGG 60.680 44.000 0.00 0.00 0.00 3.77
312 313 5.343249 GCTGGCATTAAGAAATAGGTGTTG 58.657 41.667 0.00 0.00 0.00 3.33
313 314 4.402474 GGCTGGCATTAAGAAATAGGTGTT 59.598 41.667 0.00 0.00 0.00 3.32
314 315 3.954258 GGCTGGCATTAAGAAATAGGTGT 59.046 43.478 0.00 0.00 0.00 4.16
315 316 3.953612 TGGCTGGCATTAAGAAATAGGTG 59.046 43.478 0.00 0.00 0.00 4.00
316 317 4.210331 CTGGCTGGCATTAAGAAATAGGT 58.790 43.478 3.74 0.00 0.00 3.08
317 318 3.571401 CCTGGCTGGCATTAAGAAATAGG 59.429 47.826 3.74 0.00 0.00 2.57
318 319 4.037208 CACCTGGCTGGCATTAAGAAATAG 59.963 45.833 10.71 0.00 40.22 1.73
319 320 3.953612 CACCTGGCTGGCATTAAGAAATA 59.046 43.478 10.71 0.00 40.22 1.40
320 321 2.762327 CACCTGGCTGGCATTAAGAAAT 59.238 45.455 10.71 0.00 40.22 2.17
321 322 2.170166 CACCTGGCTGGCATTAAGAAA 58.830 47.619 10.71 0.00 40.22 2.52
322 323 1.354031 TCACCTGGCTGGCATTAAGAA 59.646 47.619 10.71 0.00 40.22 2.52
323 324 0.991146 TCACCTGGCTGGCATTAAGA 59.009 50.000 10.71 0.00 40.22 2.10
324 325 1.747355 CTTCACCTGGCTGGCATTAAG 59.253 52.381 10.71 5.46 40.22 1.85
325 326 1.354031 TCTTCACCTGGCTGGCATTAA 59.646 47.619 10.71 0.00 40.22 1.40
326 327 0.991146 TCTTCACCTGGCTGGCATTA 59.009 50.000 10.71 0.00 40.22 1.90
327 328 0.112995 TTCTTCACCTGGCTGGCATT 59.887 50.000 10.71 0.00 40.22 3.56
328 329 0.610232 GTTCTTCACCTGGCTGGCAT 60.610 55.000 10.71 0.00 40.22 4.40
329 330 1.228245 GTTCTTCACCTGGCTGGCA 60.228 57.895 10.71 3.18 40.22 4.92
330 331 0.538287 AAGTTCTTCACCTGGCTGGC 60.538 55.000 10.71 0.00 40.22 4.85
331 332 1.242076 CAAGTTCTTCACCTGGCTGG 58.758 55.000 9.11 9.11 42.93 4.85
332 333 0.595095 GCAAGTTCTTCACCTGGCTG 59.405 55.000 0.00 0.00 0.00 4.85
333 334 0.183492 TGCAAGTTCTTCACCTGGCT 59.817 50.000 0.00 0.00 0.00 4.75
334 335 0.312102 GTGCAAGTTCTTCACCTGGC 59.688 55.000 0.00 0.00 0.00 4.85
335 336 1.605710 CAGTGCAAGTTCTTCACCTGG 59.394 52.381 0.00 0.00 0.00 4.45
336 337 1.002033 GCAGTGCAAGTTCTTCACCTG 60.002 52.381 11.09 0.00 0.00 4.00
337 338 1.312815 GCAGTGCAAGTTCTTCACCT 58.687 50.000 11.09 0.00 0.00 4.00
338 339 1.024271 TGCAGTGCAAGTTCTTCACC 58.976 50.000 17.26 0.00 34.76 4.02
339 340 2.849880 TTGCAGTGCAAGTTCTTCAC 57.150 45.000 26.36 6.88 43.99 3.18
357 358 4.699522 GAAGTCCAGGGCGCCGTT 62.700 66.667 21.08 7.73 0.00 4.44
370 371 4.602340 ATGTCTGACTTTACGTGGAAGT 57.398 40.909 16.09 16.09 39.90 3.01
371 372 5.103000 CCTATGTCTGACTTTACGTGGAAG 58.897 45.833 9.51 5.08 0.00 3.46
372 373 4.081862 CCCTATGTCTGACTTTACGTGGAA 60.082 45.833 9.51 0.00 0.00 3.53
373 374 3.446161 CCCTATGTCTGACTTTACGTGGA 59.554 47.826 9.51 0.00 0.00 4.02
374 375 3.446161 TCCCTATGTCTGACTTTACGTGG 59.554 47.826 9.51 1.41 0.00 4.94
375 376 4.082408 TGTCCCTATGTCTGACTTTACGTG 60.082 45.833 9.51 0.00 0.00 4.49
376 377 4.084287 TGTCCCTATGTCTGACTTTACGT 58.916 43.478 9.51 0.00 0.00 3.57
377 378 4.713824 TGTCCCTATGTCTGACTTTACG 57.286 45.455 9.51 0.00 0.00 3.18
378 379 5.046520 AGGTTGTCCCTATGTCTGACTTTAC 60.047 44.000 9.51 0.36 43.87 2.01
379 380 5.091552 AGGTTGTCCCTATGTCTGACTTTA 58.908 41.667 9.51 0.67 43.87 1.85
380 381 3.910627 AGGTTGTCCCTATGTCTGACTTT 59.089 43.478 9.51 0.00 43.87 2.66
381 382 3.515901 GAGGTTGTCCCTATGTCTGACTT 59.484 47.826 9.51 5.39 46.51 3.01
382 383 3.100671 GAGGTTGTCCCTATGTCTGACT 58.899 50.000 9.51 0.00 46.51 3.41
383 384 3.100671 AGAGGTTGTCCCTATGTCTGAC 58.899 50.000 0.00 0.00 46.51 3.51
384 385 3.366396 GAGAGGTTGTCCCTATGTCTGA 58.634 50.000 0.00 0.00 46.51 3.27
385 386 2.432510 GGAGAGGTTGTCCCTATGTCTG 59.567 54.545 0.00 0.00 46.51 3.51
386 387 2.753247 GGAGAGGTTGTCCCTATGTCT 58.247 52.381 0.00 0.00 46.51 3.41
387 388 1.409427 CGGAGAGGTTGTCCCTATGTC 59.591 57.143 0.00 0.00 46.51 3.06
388 389 1.486211 CGGAGAGGTTGTCCCTATGT 58.514 55.000 0.00 0.00 46.51 2.29
389 390 0.105039 GCGGAGAGGTTGTCCCTATG 59.895 60.000 0.00 0.00 46.51 2.23
390 391 0.032017 AGCGGAGAGGTTGTCCCTAT 60.032 55.000 0.00 0.00 46.51 2.57
391 392 0.252103 AAGCGGAGAGGTTGTCCCTA 60.252 55.000 0.00 0.00 46.51 3.53
393 394 0.831307 ATAAGCGGAGAGGTTGTCCC 59.169 55.000 0.00 0.00 41.21 4.46
394 395 1.207329 ACATAAGCGGAGAGGTTGTCC 59.793 52.381 0.00 0.00 41.21 4.02
395 396 2.271800 CACATAAGCGGAGAGGTTGTC 58.728 52.381 0.00 0.00 41.21 3.18
396 397 1.676014 GCACATAAGCGGAGAGGTTGT 60.676 52.381 0.00 0.00 41.21 3.32
397 398 1.009829 GCACATAAGCGGAGAGGTTG 58.990 55.000 0.00 0.00 41.21 3.77
398 399 0.107654 GGCACATAAGCGGAGAGGTT 60.108 55.000 0.00 0.00 43.76 3.50
399 400 0.978146 AGGCACATAAGCGGAGAGGT 60.978 55.000 0.00 0.00 34.64 3.85
400 401 0.179000 AAGGCACATAAGCGGAGAGG 59.821 55.000 0.00 0.00 34.64 3.69
401 402 2.029838 AAAGGCACATAAGCGGAGAG 57.970 50.000 0.00 0.00 34.64 3.20
402 403 2.083774 CAAAAGGCACATAAGCGGAGA 58.916 47.619 0.00 0.00 34.64 3.71
403 404 1.468054 GCAAAAGGCACATAAGCGGAG 60.468 52.381 0.00 0.00 43.97 4.63
404 405 0.525761 GCAAAAGGCACATAAGCGGA 59.474 50.000 0.00 0.00 43.97 5.54
405 406 3.034569 GCAAAAGGCACATAAGCGG 57.965 52.632 0.00 0.00 43.97 5.52
415 416 3.903360 TGTTTTATACGTGGCAAAAGGC 58.097 40.909 0.00 0.00 43.74 4.35
416 417 5.099575 GGATGTTTTATACGTGGCAAAAGG 58.900 41.667 0.00 0.00 0.00 3.11
417 418 5.704888 TGGATGTTTTATACGTGGCAAAAG 58.295 37.500 0.00 0.00 0.00 2.27
418 419 5.707242 TGGATGTTTTATACGTGGCAAAA 57.293 34.783 0.00 0.00 0.00 2.44
419 420 5.906113 ATGGATGTTTTATACGTGGCAAA 57.094 34.783 0.00 0.00 0.00 3.68
420 421 5.880887 TGTATGGATGTTTTATACGTGGCAA 59.119 36.000 0.00 0.00 31.55 4.52
421 422 5.294799 GTGTATGGATGTTTTATACGTGGCA 59.705 40.000 0.00 0.00 31.55 4.92
422 423 5.294799 TGTGTATGGATGTTTTATACGTGGC 59.705 40.000 0.00 0.00 31.55 5.01
423 424 6.912203 TGTGTATGGATGTTTTATACGTGG 57.088 37.500 0.00 0.00 31.55 4.94
424 425 7.694784 GGTTTGTGTATGGATGTTTTATACGTG 59.305 37.037 0.00 0.00 31.55 4.49
425 426 7.608761 AGGTTTGTGTATGGATGTTTTATACGT 59.391 33.333 0.00 0.00 31.55 3.57
426 427 7.981142 AGGTTTGTGTATGGATGTTTTATACG 58.019 34.615 0.00 0.00 31.55 3.06
427 428 8.120465 CGAGGTTTGTGTATGGATGTTTTATAC 58.880 37.037 0.00 0.00 0.00 1.47
428 429 8.041919 TCGAGGTTTGTGTATGGATGTTTTATA 58.958 33.333 0.00 0.00 0.00 0.98
429 430 6.882140 TCGAGGTTTGTGTATGGATGTTTTAT 59.118 34.615 0.00 0.00 0.00 1.40
430 431 6.148150 GTCGAGGTTTGTGTATGGATGTTTTA 59.852 38.462 0.00 0.00 0.00 1.52
441 442 1.677576 AGACACGTCGAGGTTTGTGTA 59.322 47.619 8.27 0.00 44.93 2.90
519 520 9.887406 GAATAAATTGGAACTTTCTCACGTAAA 57.113 29.630 0.00 0.00 0.00 2.01
520 521 9.058174 TGAATAAATTGGAACTTTCTCACGTAA 57.942 29.630 0.00 0.00 0.00 3.18
521 522 8.610248 TGAATAAATTGGAACTTTCTCACGTA 57.390 30.769 0.00 0.00 0.00 3.57
522 523 7.504924 TGAATAAATTGGAACTTTCTCACGT 57.495 32.000 0.00 0.00 0.00 4.49
523 524 8.454106 AGATGAATAAATTGGAACTTTCTCACG 58.546 33.333 0.00 0.00 0.00 4.35
526 527 9.495754 CGAAGATGAATAAATTGGAACTTTCTC 57.504 33.333 0.00 0.00 0.00 2.87
527 528 9.231297 TCGAAGATGAATAAATTGGAACTTTCT 57.769 29.630 0.00 0.00 0.00 2.52
528 529 9.278734 GTCGAAGATGAATAAATTGGAACTTTC 57.721 33.333 0.00 0.00 40.67 2.62
529 530 8.244113 GGTCGAAGATGAATAAATTGGAACTTT 58.756 33.333 0.00 0.00 40.67 2.66
530 531 7.393234 TGGTCGAAGATGAATAAATTGGAACTT 59.607 33.333 0.00 0.00 40.67 2.66
531 532 6.884295 TGGTCGAAGATGAATAAATTGGAACT 59.116 34.615 0.00 0.00 40.67 3.01
532 533 7.083875 TGGTCGAAGATGAATAAATTGGAAC 57.916 36.000 0.00 0.00 40.67 3.62
533 534 7.201812 CCATGGTCGAAGATGAATAAATTGGAA 60.202 37.037 2.57 0.00 40.67 3.53
534 535 6.262944 CCATGGTCGAAGATGAATAAATTGGA 59.737 38.462 2.57 0.00 40.67 3.53
535 536 6.441274 CCATGGTCGAAGATGAATAAATTGG 58.559 40.000 2.57 0.00 40.67 3.16
536 537 5.916883 GCCATGGTCGAAGATGAATAAATTG 59.083 40.000 14.67 0.00 40.67 2.32
537 538 5.277974 CGCCATGGTCGAAGATGAATAAATT 60.278 40.000 19.72 0.00 40.67 1.82
538 539 4.214119 CGCCATGGTCGAAGATGAATAAAT 59.786 41.667 19.72 0.00 40.67 1.40
539 540 3.559655 CGCCATGGTCGAAGATGAATAAA 59.440 43.478 19.72 0.00 40.67 1.40
540 541 3.130633 CGCCATGGTCGAAGATGAATAA 58.869 45.455 19.72 0.00 40.67 1.40
541 542 2.547855 CCGCCATGGTCGAAGATGAATA 60.548 50.000 24.22 0.00 40.67 1.75
542 543 1.586422 CGCCATGGTCGAAGATGAAT 58.414 50.000 19.72 0.00 40.67 2.57
543 544 0.461870 CCGCCATGGTCGAAGATGAA 60.462 55.000 24.22 0.00 40.67 2.57
544 545 1.143838 CCGCCATGGTCGAAGATGA 59.856 57.895 24.22 0.00 40.67 2.92
545 546 3.723172 CCGCCATGGTCGAAGATG 58.277 61.111 24.22 8.25 40.67 2.90
554 555 8.918202 ATATATACCATATTTAACCGCCATGG 57.082 34.615 7.63 7.63 46.41 3.66
556 557 9.914834 ACAATATATACCATATTTAACCGCCAT 57.085 29.630 0.00 0.00 0.00 4.40
557 558 9.742144 AACAATATATACCATATTTAACCGCCA 57.258 29.630 0.00 0.00 0.00 5.69
558 559 9.997482 CAACAATATATACCATATTTAACCGCC 57.003 33.333 0.00 0.00 0.00 6.13
584 585 9.916397 CGGTTTACTCAACTGATGATAAATTAC 57.084 33.333 0.00 0.00 43.78 1.89
585 586 9.104965 CCGGTTTACTCAACTGATGATAAATTA 57.895 33.333 0.00 0.00 43.78 1.40
586 587 7.415206 GCCGGTTTACTCAACTGATGATAAATT 60.415 37.037 1.90 0.00 43.78 1.82
587 588 6.038271 GCCGGTTTACTCAACTGATGATAAAT 59.962 38.462 1.90 0.00 43.78 1.40
588 589 5.353123 GCCGGTTTACTCAACTGATGATAAA 59.647 40.000 1.90 0.00 43.78 1.40
589 590 4.873827 GCCGGTTTACTCAACTGATGATAA 59.126 41.667 1.90 0.00 43.78 1.75
596 597 1.068474 CTCGCCGGTTTACTCAACTG 58.932 55.000 1.90 0.00 41.05 3.16
598 599 0.037975 TCCTCGCCGGTTTACTCAAC 60.038 55.000 1.90 0.00 34.18 3.18
608 609 2.629051 AGTTAAGATTTTCCTCGCCGG 58.371 47.619 0.00 0.00 0.00 6.13
609 610 5.789710 TTAAGTTAAGATTTTCCTCGCCG 57.210 39.130 0.00 0.00 0.00 6.46
612 613 7.355332 TCCGTTTAAGTTAAGATTTTCCTCG 57.645 36.000 0.00 0.00 0.00 4.63
695 696 7.008266 GCCTTCACGTTTATGTTTTGTATGATG 59.992 37.037 0.00 0.00 0.00 3.07
696 697 7.027161 GCCTTCACGTTTATGTTTTGTATGAT 58.973 34.615 0.00 0.00 0.00 2.45
697 698 6.375377 GCCTTCACGTTTATGTTTTGTATGA 58.625 36.000 0.00 0.00 0.00 2.15
698 699 5.282778 CGCCTTCACGTTTATGTTTTGTATG 59.717 40.000 0.00 0.00 0.00 2.39
764 770 0.179171 CCTGTGGACGCGTAGTACTG 60.179 60.000 13.97 14.84 33.83 2.74
765 771 0.321919 TCCTGTGGACGCGTAGTACT 60.322 55.000 13.97 0.00 33.83 2.73
766 772 0.737219 ATCCTGTGGACGCGTAGTAC 59.263 55.000 13.97 12.47 32.98 2.73
783 789 5.163478 ACGGATAATATACCCGCACCTAATC 60.163 44.000 9.42 0.00 46.54 1.75
819 827 2.674796 GTCTGGTTAAGCAGACGGAT 57.325 50.000 37.84 0.00 38.46 4.18
834 842 3.508840 GCCCGCCAAATCCGTCTG 61.509 66.667 0.00 0.00 0.00 3.51
859 871 0.586802 GACTCGTGGGCAAACAAGTC 59.413 55.000 0.00 0.00 0.00 3.01
860 872 0.180406 AGACTCGTGGGCAAACAAGT 59.820 50.000 0.00 0.00 0.00 3.16
887 915 1.178276 TCTGACTTTCTCTCCGCCTC 58.822 55.000 0.00 0.00 0.00 4.70
909 937 2.745100 GGGACGGACGGGCTTTTC 60.745 66.667 0.00 0.00 0.00 2.29
910 938 3.246880 AGGGACGGACGGGCTTTT 61.247 61.111 0.00 0.00 0.00 2.27
911 939 3.703127 GAGGGACGGACGGGCTTT 61.703 66.667 0.00 0.00 0.00 3.51
960 1004 0.322546 GGGTGGTGATTGAGGGTGAC 60.323 60.000 0.00 0.00 0.00 3.67
1044 1092 3.891586 CTTGTTGCCGCTGCTGCTG 62.892 63.158 16.81 8.34 38.71 4.41
1045 1093 3.667282 CTTGTTGCCGCTGCTGCT 61.667 61.111 16.81 0.00 38.71 4.24
1046 1094 3.198236 TTCTTGTTGCCGCTGCTGC 62.198 57.895 9.23 9.23 38.71 5.25
1054 1102 0.962855 GCCTCCTCCTTCTTGTTGCC 60.963 60.000 0.00 0.00 0.00 4.52
1214 1271 2.135664 ACAGACGAAGAAGGAACACG 57.864 50.000 0.00 0.00 0.00 4.49
1215 1272 4.571176 AGAAAACAGACGAAGAAGGAACAC 59.429 41.667 0.00 0.00 0.00 3.32
1217 1274 5.107951 CGTAGAAAACAGACGAAGAAGGAAC 60.108 44.000 0.00 0.00 38.88 3.62
1241 1298 3.155501 ACGGGCCTAGATCTACATGTAC 58.844 50.000 0.84 0.00 0.00 2.90
1262 1335 1.339610 CCAACAAATTCAACCGCCAGA 59.660 47.619 0.00 0.00 0.00 3.86
1320 1393 2.011540 GGTTGGACCGAGATTCAGAC 57.988 55.000 0.00 0.00 0.00 3.51
1525 1644 8.141909 CGATGTATACTGATTAAAGAGGTGGAA 58.858 37.037 4.17 0.00 0.00 3.53
1536 1655 3.004944 TGCGGTGCGATGTATACTGATTA 59.995 43.478 4.17 0.00 0.00 1.75
1540 1659 1.783284 ATGCGGTGCGATGTATACTG 58.217 50.000 4.17 0.00 0.00 2.74
1551 1670 0.237235 TGAACGAAGAAATGCGGTGC 59.763 50.000 0.00 0.00 0.00 5.01
1566 1685 8.480853 GTCTGCATCTCGTAATAATAACTGAAC 58.519 37.037 0.00 0.00 0.00 3.18
1637 1756 2.417586 GCAACCGGTGGTAGTATTTGAC 59.582 50.000 8.52 0.00 33.12 3.18
1644 1763 2.590114 GGAGGCAACCGGTGGTAGT 61.590 63.158 8.52 0.00 33.12 2.73
1645 1764 1.910580 ATGGAGGCAACCGGTGGTAG 61.911 60.000 8.52 0.00 33.12 3.18
1646 1765 1.493854 AATGGAGGCAACCGGTGGTA 61.494 55.000 8.52 0.00 33.12 3.25
1647 1766 2.366153 AAATGGAGGCAACCGGTGGT 62.366 55.000 8.52 0.00 37.65 4.16
1653 1772 0.609662 ATGCACAAATGGAGGCAACC 59.390 50.000 0.00 0.00 40.02 3.77
1685 1804 6.127897 CCTGGTGATCAAAAGAATAACAGGAC 60.128 42.308 0.00 0.00 43.25 3.85
1717 1836 6.639686 GTGTTGCAATGAATCACATATCATCC 59.360 38.462 0.59 0.00 38.38 3.51
1724 1843 3.612241 CGTGGTGTTGCAATGAATCACAT 60.612 43.478 16.21 0.00 41.45 3.21
1725 1844 2.287487 CGTGGTGTTGCAATGAATCACA 60.287 45.455 16.21 0.68 0.00 3.58
1740 1859 6.100004 CCCAAGTATCTATATAAGCGTGGTG 58.900 44.000 0.00 0.00 0.00 4.17
1763 1882 2.233676 GGGAATGTCAAATGGGTCAACC 59.766 50.000 0.00 0.00 40.81 3.77
1827 1954 6.012337 TCAAATATCATAAAGGACCAGGCA 57.988 37.500 0.00 0.00 0.00 4.75
1828 1955 7.530426 AATCAAATATCATAAAGGACCAGGC 57.470 36.000 0.00 0.00 0.00 4.85
1855 2006 5.482006 GGCAGAGCAGAAAATACCATTTTT 58.518 37.500 0.00 0.00 0.00 1.94
1930 2081 1.144936 GAGAACCCAGGGAGCATCG 59.855 63.158 14.54 0.00 34.37 3.84
2020 2171 5.663106 AGTGAGGATTTGGTATAGCTCTTGA 59.337 40.000 3.20 0.00 0.00 3.02
2025 2176 6.122964 GGAAAAGTGAGGATTTGGTATAGCT 58.877 40.000 3.20 0.00 0.00 3.32
2032 2183 2.179427 GGGGGAAAAGTGAGGATTTGG 58.821 52.381 0.00 0.00 0.00 3.28
2098 2258 1.634757 TTGCAGCACCGCTTGTATCG 61.635 55.000 0.00 0.00 36.40 2.92
2158 2318 1.816835 ACGCCGTCGATCCACATATAT 59.183 47.619 0.00 0.00 39.41 0.86
2166 2326 1.521423 CAAAGATAACGCCGTCGATCC 59.479 52.381 0.00 0.00 39.41 3.36
2186 2346 5.296035 ACAATAGGAATAAGTAAGCAACGGC 59.704 40.000 0.00 0.00 41.61 5.68
2424 2585 2.478831 GCCATGTGCTAAGCTCTACTC 58.521 52.381 0.00 0.00 36.87 2.59
2463 2630 9.607988 AGACCAAACGAATAACATCACAATATA 57.392 29.630 0.00 0.00 0.00 0.86
2518 2695 5.710099 AGTTGTTTCTCCTGAAAACAAGACA 59.290 36.000 12.86 0.00 42.94 3.41
2617 2795 4.663166 CAAGCATGATTTGAGCTGAGAAG 58.337 43.478 0.00 0.00 38.86 2.85
2698 2878 7.649370 AGATCAGCACAACTAATAATCATCG 57.351 36.000 0.00 0.00 0.00 3.84
2893 3073 6.881065 TCTTTCTCCTGAATTTCATGTTCGAT 59.119 34.615 0.00 0.00 31.56 3.59
2929 3109 9.130312 GTCTCCTGAGTAATTATAACAATAGCG 57.870 37.037 0.00 0.00 0.00 4.26
2933 3119 7.934120 GGCAGTCTCCTGAGTAATTATAACAAT 59.066 37.037 0.00 0.00 41.50 2.71
2938 3124 6.782494 TGATGGCAGTCTCCTGAGTAATTATA 59.218 38.462 0.00 0.00 41.50 0.98
3068 3262 1.937223 GTGTTCGTTCACACCATCACA 59.063 47.619 7.58 0.00 41.18 3.58
3112 3307 2.555325 ACATTCCATGACACAAGCACAG 59.445 45.455 0.00 0.00 0.00 3.66
3145 3340 5.069914 TCAGCTAACTCAACCACTTTACTCA 59.930 40.000 0.00 0.00 0.00 3.41
3210 3405 1.202687 ACACACACACACATCCTCCAG 60.203 52.381 0.00 0.00 0.00 3.86
3233 3442 3.064271 TCTGCGTACAAAACTGTGAAACC 59.936 43.478 0.00 0.00 34.36 3.27
3273 3482 2.654912 CGCTCGACACCAAACGTCC 61.655 63.158 0.00 0.00 0.00 4.79
3275 3484 2.660552 CCGCTCGACACCAAACGT 60.661 61.111 0.00 0.00 0.00 3.99
3292 3505 5.134661 ACTCTCTCCACATAGTAGGTAAGC 58.865 45.833 0.00 0.00 0.00 3.09
3325 3542 7.665559 ACAAAAGATACAGCCTACAAAGATCAA 59.334 33.333 0.00 0.00 0.00 2.57
3327 3544 7.617041 ACAAAAGATACAGCCTACAAAGATC 57.383 36.000 0.00 0.00 0.00 2.75
3328 3545 9.686683 ATTACAAAAGATACAGCCTACAAAGAT 57.313 29.630 0.00 0.00 0.00 2.40
3330 3547 8.946085 TCATTACAAAAGATACAGCCTACAAAG 58.054 33.333 0.00 0.00 0.00 2.77
3331 3548 8.856153 TCATTACAAAAGATACAGCCTACAAA 57.144 30.769 0.00 0.00 0.00 2.83
3348 3566 7.041098 GGAGCAACTTCTTTTCTCTCATTACAA 60.041 37.037 0.00 0.00 0.00 2.41
3380 3598 5.012893 CCTTTTTCTGATGGAGTAAGCCTT 58.987 41.667 0.00 0.00 0.00 4.35
3381 3599 4.568592 CCCTTTTTCTGATGGAGTAAGCCT 60.569 45.833 0.00 0.00 0.00 4.58
3394 3613 4.861102 AATCTTGTGCTCCCTTTTTCTG 57.139 40.909 0.00 0.00 0.00 3.02
3425 3644 8.601845 ACTTGATGGGTTACAAAAATTTAAGC 57.398 30.769 0.00 0.00 0.00 3.09
3428 3647 9.646427 GCATACTTGATGGGTTACAAAAATTTA 57.354 29.630 0.00 0.00 35.91 1.40
3483 3702 6.823182 CACCAACATTCTTTTCTTCCCTTTTT 59.177 34.615 0.00 0.00 0.00 1.94
3484 3703 6.070251 ACACCAACATTCTTTTCTTCCCTTTT 60.070 34.615 0.00 0.00 0.00 2.27
3485 3704 5.425217 ACACCAACATTCTTTTCTTCCCTTT 59.575 36.000 0.00 0.00 0.00 3.11
3486 3705 4.962362 ACACCAACATTCTTTTCTTCCCTT 59.038 37.500 0.00 0.00 0.00 3.95
3487 3706 4.546674 ACACCAACATTCTTTTCTTCCCT 58.453 39.130 0.00 0.00 0.00 4.20
3488 3707 4.937201 ACACCAACATTCTTTTCTTCCC 57.063 40.909 0.00 0.00 0.00 3.97
3501 3720 0.455410 GCAGCTGTTCAACACCAACA 59.545 50.000 16.64 0.00 32.75 3.33
3532 3751 1.303074 AGGCCAGCACACATCACAG 60.303 57.895 5.01 0.00 0.00 3.66
3533 3752 1.601477 CAGGCCAGCACACATCACA 60.601 57.895 5.01 0.00 0.00 3.58
3609 3828 1.226974 CGTATGTGGCCAGGAGTCG 60.227 63.158 5.11 4.10 0.00 4.18
3627 3846 0.385974 GTGTTGTGTTCGATGCAGGC 60.386 55.000 0.00 0.00 0.00 4.85
3636 3855 4.351131 AAGACTTTTCGGTGTTGTGTTC 57.649 40.909 0.00 0.00 0.00 3.18
3682 3908 4.400961 AGACGGAAGCAGCAGGGC 62.401 66.667 0.00 0.00 0.00 5.19
3870 4096 1.730902 CGGCATCGGCATCGTAGAG 60.731 63.158 0.00 0.00 43.71 2.43
3968 4194 1.087771 GCCAATGCCATGAAAGCAGC 61.088 55.000 0.00 0.00 44.90 5.25
3969 4195 0.535335 AGCCAATGCCATGAAAGCAG 59.465 50.000 0.00 0.00 44.90 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.