Multiple sequence alignment - TraesCS1A01G196200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G196200 | chr1A | 100.000 | 3890 | 0 | 0 | 1 | 3890 | 354303644 | 354299755 | 0.000000e+00 | 7184.0 |
1 | TraesCS1A01G196200 | chr1D | 96.806 | 3100 | 79 | 11 | 798 | 3890 | 282289342 | 282286256 | 0.000000e+00 | 5158.0 |
2 | TraesCS1A01G196200 | chr1D | 93.548 | 186 | 11 | 1 | 1 | 186 | 282289857 | 282289673 | 3.830000e-70 | 276.0 |
3 | TraesCS1A01G196200 | chr1D | 92.248 | 129 | 8 | 2 | 366 | 494 | 282289472 | 282289346 | 8.590000e-42 | 182.0 |
4 | TraesCS1A01G196200 | chr1B | 95.747 | 2798 | 89 | 12 | 814 | 3601 | 383799994 | 383797217 | 0.000000e+00 | 4481.0 |
5 | TraesCS1A01G196200 | chr1B | 95.156 | 289 | 6 | 3 | 3606 | 3890 | 383797166 | 383796882 | 2.130000e-122 | 449.0 |
6 | TraesCS1A01G196200 | chr1B | 93.011 | 186 | 12 | 1 | 1 | 186 | 383800433 | 383800249 | 1.780000e-68 | 270.0 |
7 | TraesCS1A01G196200 | chr1B | 95.192 | 104 | 4 | 1 | 394 | 497 | 383800120 | 383800018 | 3.110000e-36 | 163.0 |
8 | TraesCS1A01G196200 | chr2A | 92.045 | 264 | 17 | 4 | 534 | 796 | 712296224 | 712295964 | 6.140000e-98 | 368.0 |
9 | TraesCS1A01G196200 | chr2A | 93.200 | 250 | 16 | 1 | 548 | 796 | 17442397 | 17442148 | 2.210000e-97 | 366.0 |
10 | TraesCS1A01G196200 | chr5A | 93.496 | 246 | 15 | 1 | 548 | 792 | 700868625 | 700868870 | 7.940000e-97 | 364.0 |
11 | TraesCS1A01G196200 | chr5A | 94.000 | 50 | 0 | 2 | 495 | 544 | 594131906 | 594131952 | 5.390000e-09 | 73.1 |
12 | TraesCS1A01G196200 | chr5A | 91.837 | 49 | 1 | 2 | 496 | 544 | 709483182 | 709483137 | 9.020000e-07 | 65.8 |
13 | TraesCS1A01G196200 | chr7B | 93.443 | 244 | 15 | 1 | 548 | 790 | 200347402 | 200347645 | 1.030000e-95 | 361.0 |
14 | TraesCS1A01G196200 | chr5B | 91.923 | 260 | 17 | 4 | 534 | 792 | 644946710 | 644946454 | 1.030000e-95 | 361.0 |
15 | TraesCS1A01G196200 | chr5B | 86.441 | 59 | 4 | 3 | 486 | 544 | 641797762 | 641797708 | 1.170000e-05 | 62.1 |
16 | TraesCS1A01G196200 | chr2B | 92.800 | 250 | 17 | 1 | 548 | 796 | 800099361 | 800099112 | 1.030000e-95 | 361.0 |
17 | TraesCS1A01G196200 | chr2B | 89.655 | 58 | 1 | 3 | 489 | 544 | 106151589 | 106151535 | 6.970000e-08 | 69.4 |
18 | TraesCS1A01G196200 | chr3A | 91.321 | 265 | 20 | 3 | 534 | 797 | 164275104 | 164275366 | 3.700000e-95 | 359.0 |
19 | TraesCS1A01G196200 | chr7A | 90.977 | 266 | 20 | 3 | 548 | 812 | 106684355 | 106684093 | 4.780000e-94 | 355.0 |
20 | TraesCS1A01G196200 | chr7A | 90.909 | 264 | 21 | 3 | 534 | 796 | 4502820 | 4502559 | 6.180000e-93 | 351.0 |
21 | TraesCS1A01G196200 | chr7A | 90.741 | 54 | 1 | 3 | 491 | 544 | 516918219 | 516918170 | 6.970000e-08 | 69.4 |
22 | TraesCS1A01G196200 | chr6B | 95.652 | 46 | 0 | 1 | 495 | 540 | 75916802 | 75916845 | 5.390000e-09 | 73.1 |
23 | TraesCS1A01G196200 | chr4A | 93.878 | 49 | 0 | 2 | 496 | 544 | 595656331 | 595656376 | 1.940000e-08 | 71.3 |
24 | TraesCS1A01G196200 | chr4A | 89.091 | 55 | 3 | 2 | 490 | 544 | 737298762 | 737298711 | 9.020000e-07 | 65.8 |
25 | TraesCS1A01G196200 | chr4B | 88.525 | 61 | 1 | 5 | 488 | 545 | 561936303 | 561936360 | 6.970000e-08 | 69.4 |
26 | TraesCS1A01G196200 | chr3B | 87.931 | 58 | 4 | 2 | 487 | 544 | 678449798 | 678449852 | 9.020000e-07 | 65.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G196200 | chr1A | 354299755 | 354303644 | 3889 | True | 7184.00 | 7184 | 100.000000 | 1 | 3890 | 1 | chr1A.!!$R1 | 3889 |
1 | TraesCS1A01G196200 | chr1D | 282286256 | 282289857 | 3601 | True | 1872.00 | 5158 | 94.200667 | 1 | 3890 | 3 | chr1D.!!$R1 | 3889 |
2 | TraesCS1A01G196200 | chr1B | 383796882 | 383800433 | 3551 | True | 1340.75 | 4481 | 94.776500 | 1 | 3890 | 4 | chr1B.!!$R1 | 3889 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
338 | 390 | 0.249741 | AGCACGTTTTAGCTGTCCGT | 60.250 | 50.0 | 0.00 | 0.0 | 40.13 | 4.69 | F |
850 | 909 | 0.693049 | GTTTCAGCCTCCTTCCTCCA | 59.307 | 55.0 | 0.00 | 0.0 | 0.00 | 3.86 | F |
1683 | 1748 | 0.177141 | GTACCATGGCCGAGCTACAA | 59.823 | 55.0 | 13.04 | 0.0 | 0.00 | 2.41 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1682 | 1747 | 0.742281 | CGCATAGGACAGCAGCTGTT | 60.742 | 55.000 | 28.84 | 16.67 | 45.44 | 3.16 | R |
1900 | 1965 | 1.303074 | CGGATGCCATGGATCCCAG | 60.303 | 63.158 | 25.39 | 15.33 | 36.75 | 4.45 | R |
3032 | 3097 | 0.537188 | TTTTTGTTGGGCGCTTCCAA | 59.463 | 45.000 | 13.35 | 13.35 | 43.82 | 3.53 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
97 | 98 | 4.722361 | TCATTGCTAAGCATGCATCAAA | 57.278 | 36.364 | 21.98 | 7.84 | 38.76 | 2.69 |
104 | 105 | 4.980434 | GCTAAGCATGCATCAAATTCGATT | 59.020 | 37.500 | 21.98 | 2.96 | 0.00 | 3.34 |
106 | 107 | 4.380841 | AGCATGCATCAAATTCGATTGT | 57.619 | 36.364 | 21.98 | 0.00 | 0.00 | 2.71 |
144 | 145 | 8.220559 | ACCCAAAATGCAGTATCATACTCTATT | 58.779 | 33.333 | 0.00 | 0.00 | 36.76 | 1.73 |
188 | 201 | 8.073768 | AGATAAAACCATACAACTTTGACAACG | 58.926 | 33.333 | 0.00 | 0.00 | 0.00 | 4.10 |
194 | 207 | 3.111958 | ACAACTTTGACAACGACAACG | 57.888 | 42.857 | 0.00 | 0.00 | 45.75 | 4.10 |
195 | 208 | 1.837747 | CAACTTTGACAACGACAACGC | 59.162 | 47.619 | 0.00 | 0.00 | 43.96 | 4.84 |
209 | 222 | 2.902484 | GACAACGCAGCATTTAGTTTCG | 59.098 | 45.455 | 0.00 | 0.00 | 0.00 | 3.46 |
213 | 226 | 2.157668 | ACGCAGCATTTAGTTTCGACTG | 59.842 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
215 | 228 | 2.729156 | GCAGCATTTAGTTTCGACTGGC | 60.729 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
219 | 239 | 3.933332 | GCATTTAGTTTCGACTGGCTAGT | 59.067 | 43.478 | 0.69 | 0.69 | 40.66 | 2.57 |
259 | 279 | 9.821240 | ATTTATGGTTTTGGTATATGGATAGCA | 57.179 | 29.630 | 0.00 | 0.00 | 42.82 | 3.49 |
270 | 290 | 7.040478 | TGGTATATGGATAGCAAGTTTTCATGC | 60.040 | 37.037 | 0.00 | 0.00 | 41.84 | 4.06 |
271 | 291 | 6.964807 | ATATGGATAGCAAGTTTTCATGCA | 57.035 | 33.333 | 0.00 | 0.00 | 45.49 | 3.96 |
272 | 292 | 5.864418 | ATGGATAGCAAGTTTTCATGCAT | 57.136 | 34.783 | 0.00 | 0.00 | 45.49 | 3.96 |
273 | 293 | 5.252969 | TGGATAGCAAGTTTTCATGCATC | 57.747 | 39.130 | 0.00 | 2.12 | 45.49 | 3.91 |
274 | 294 | 4.098349 | TGGATAGCAAGTTTTCATGCATCC | 59.902 | 41.667 | 0.00 | 15.80 | 45.49 | 3.51 |
275 | 295 | 4.500375 | GGATAGCAAGTTTTCATGCATCCC | 60.500 | 45.833 | 0.00 | 3.60 | 45.49 | 3.85 |
283 | 335 | 4.159135 | AGTTTTCATGCATCCCTTCATGTC | 59.841 | 41.667 | 0.00 | 0.00 | 40.54 | 3.06 |
293 | 345 | 5.797051 | CATCCCTTCATGTCAAATTTGGTT | 58.203 | 37.500 | 17.90 | 0.89 | 0.00 | 3.67 |
294 | 346 | 5.467035 | TCCCTTCATGTCAAATTTGGTTC | 57.533 | 39.130 | 17.90 | 9.52 | 0.00 | 3.62 |
318 | 370 | 9.627123 | TTCATCCCGAACTTTCTTGATATTATT | 57.373 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
324 | 376 | 8.004344 | CCGAACTTTCTTGATATTATTAGCACG | 58.996 | 37.037 | 0.00 | 0.00 | 0.00 | 5.34 |
325 | 377 | 8.540492 | CGAACTTTCTTGATATTATTAGCACGT | 58.460 | 33.333 | 0.00 | 0.00 | 0.00 | 4.49 |
332 | 384 | 9.542462 | TCTTGATATTATTAGCACGTTTTAGCT | 57.458 | 29.630 | 3.45 | 3.45 | 44.55 | 3.32 |
335 | 387 | 8.761497 | TGATATTATTAGCACGTTTTAGCTGTC | 58.239 | 33.333 | 8.27 | 0.00 | 41.97 | 3.51 |
338 | 390 | 0.249741 | AGCACGTTTTAGCTGTCCGT | 60.250 | 50.000 | 0.00 | 0.00 | 40.13 | 4.69 |
343 | 395 | 3.430895 | CACGTTTTAGCTGTCCGTTATGT | 59.569 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
345 | 397 | 4.622740 | ACGTTTTAGCTGTCCGTTATGTAC | 59.377 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
346 | 398 | 4.860907 | CGTTTTAGCTGTCCGTTATGTACT | 59.139 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
347 | 399 | 5.220154 | CGTTTTAGCTGTCCGTTATGTACTG | 60.220 | 44.000 | 0.00 | 0.00 | 0.00 | 2.74 |
348 | 400 | 5.648178 | TTTAGCTGTCCGTTATGTACTGA | 57.352 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
349 | 401 | 5.648178 | TTAGCTGTCCGTTATGTACTGAA | 57.352 | 39.130 | 0.00 | 0.00 | 0.00 | 3.02 |
350 | 402 | 4.530710 | AGCTGTCCGTTATGTACTGAAA | 57.469 | 40.909 | 0.00 | 0.00 | 0.00 | 2.69 |
351 | 403 | 5.086104 | AGCTGTCCGTTATGTACTGAAAT | 57.914 | 39.130 | 0.00 | 0.00 | 0.00 | 2.17 |
352 | 404 | 5.488341 | AGCTGTCCGTTATGTACTGAAATT | 58.512 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
353 | 405 | 5.938125 | AGCTGTCCGTTATGTACTGAAATTT | 59.062 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
354 | 406 | 7.101054 | AGCTGTCCGTTATGTACTGAAATTTA | 58.899 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
357 | 409 | 9.093970 | CTGTCCGTTATGTACTGAAATTTATGA | 57.906 | 33.333 | 0.00 | 0.00 | 0.00 | 2.15 |
362 | 414 | 8.612619 | CGTTATGTACTGAAATTTATGAAGGCT | 58.387 | 33.333 | 0.00 | 0.00 | 0.00 | 4.58 |
382 | 434 | 5.129155 | AGGCTTGCATTGAATATGCCTAAAA | 59.871 | 36.000 | 5.78 | 0.00 | 46.10 | 1.52 |
386 | 438 | 7.011669 | GCTTGCATTGAATATGCCTAAAACATT | 59.988 | 33.333 | 7.23 | 0.00 | 43.94 | 2.71 |
494 | 546 | 8.352942 | GTCCAGACAGTCAAAAGAAAATGTTAT | 58.647 | 33.333 | 2.66 | 0.00 | 0.00 | 1.89 |
495 | 547 | 8.912988 | TCCAGACAGTCAAAAGAAAATGTTATT | 58.087 | 29.630 | 2.66 | 0.00 | 0.00 | 1.40 |
508 | 560 | 8.451908 | AGAAAATGTTATTACTATGAGGGTGC | 57.548 | 34.615 | 0.00 | 0.00 | 0.00 | 5.01 |
509 | 561 | 8.275040 | AGAAAATGTTATTACTATGAGGGTGCT | 58.725 | 33.333 | 0.00 | 0.00 | 0.00 | 4.40 |
510 | 562 | 8.823220 | AAAATGTTATTACTATGAGGGTGCTT | 57.177 | 30.769 | 0.00 | 0.00 | 0.00 | 3.91 |
511 | 563 | 7.807977 | AATGTTATTACTATGAGGGTGCTTG | 57.192 | 36.000 | 0.00 | 0.00 | 0.00 | 4.01 |
512 | 564 | 5.680619 | TGTTATTACTATGAGGGTGCTTGG | 58.319 | 41.667 | 0.00 | 0.00 | 0.00 | 3.61 |
513 | 565 | 5.427157 | TGTTATTACTATGAGGGTGCTTGGA | 59.573 | 40.000 | 0.00 | 0.00 | 0.00 | 3.53 |
514 | 566 | 6.101150 | TGTTATTACTATGAGGGTGCTTGGAT | 59.899 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
515 | 567 | 7.291416 | TGTTATTACTATGAGGGTGCTTGGATA | 59.709 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
516 | 568 | 5.546621 | TTACTATGAGGGTGCTTGGATAC | 57.453 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
517 | 569 | 2.365617 | ACTATGAGGGTGCTTGGATACG | 59.634 | 50.000 | 0.00 | 0.00 | 42.51 | 3.06 |
518 | 570 | 1.204146 | ATGAGGGTGCTTGGATACGT | 58.796 | 50.000 | 0.00 | 0.00 | 42.51 | 3.57 |
519 | 571 | 0.981183 | TGAGGGTGCTTGGATACGTT | 59.019 | 50.000 | 0.00 | 0.00 | 42.51 | 3.99 |
520 | 572 | 1.349688 | TGAGGGTGCTTGGATACGTTT | 59.650 | 47.619 | 0.00 | 0.00 | 42.51 | 3.60 |
521 | 573 | 2.224670 | TGAGGGTGCTTGGATACGTTTT | 60.225 | 45.455 | 0.00 | 0.00 | 42.51 | 2.43 |
522 | 574 | 3.008157 | TGAGGGTGCTTGGATACGTTTTA | 59.992 | 43.478 | 0.00 | 0.00 | 42.51 | 1.52 |
523 | 575 | 3.606687 | AGGGTGCTTGGATACGTTTTAG | 58.393 | 45.455 | 0.00 | 0.00 | 42.51 | 1.85 |
524 | 576 | 3.008704 | AGGGTGCTTGGATACGTTTTAGT | 59.991 | 43.478 | 0.00 | 0.00 | 42.51 | 2.24 |
525 | 577 | 3.373130 | GGGTGCTTGGATACGTTTTAGTC | 59.627 | 47.826 | 0.00 | 0.00 | 42.51 | 2.59 |
526 | 578 | 3.373130 | GGTGCTTGGATACGTTTTAGTCC | 59.627 | 47.826 | 0.00 | 0.00 | 42.51 | 3.85 |
527 | 579 | 3.373130 | GTGCTTGGATACGTTTTAGTCCC | 59.627 | 47.826 | 0.00 | 0.00 | 42.51 | 4.46 |
528 | 580 | 3.008157 | TGCTTGGATACGTTTTAGTCCCA | 59.992 | 43.478 | 0.00 | 0.00 | 42.51 | 4.37 |
529 | 581 | 4.196971 | GCTTGGATACGTTTTAGTCCCAT | 58.803 | 43.478 | 0.00 | 0.00 | 42.51 | 4.00 |
530 | 582 | 4.035208 | GCTTGGATACGTTTTAGTCCCATG | 59.965 | 45.833 | 0.00 | 0.00 | 42.51 | 3.66 |
531 | 583 | 4.145365 | TGGATACGTTTTAGTCCCATGG | 57.855 | 45.455 | 4.14 | 4.14 | 42.51 | 3.66 |
532 | 584 | 3.118186 | TGGATACGTTTTAGTCCCATGGG | 60.118 | 47.826 | 26.30 | 26.30 | 42.51 | 4.00 |
533 | 585 | 3.135167 | GGATACGTTTTAGTCCCATGGGA | 59.865 | 47.826 | 30.62 | 30.62 | 42.90 | 4.37 |
545 | 597 | 4.411256 | TCCCATGGGACTAAAACGTATC | 57.589 | 45.455 | 30.62 | 0.00 | 39.76 | 2.24 |
546 | 598 | 3.135167 | TCCCATGGGACTAAAACGTATCC | 59.865 | 47.826 | 30.62 | 0.00 | 39.76 | 2.59 |
547 | 599 | 3.118186 | CCCATGGGACTAAAACGTATCCA | 60.118 | 47.826 | 28.27 | 0.00 | 37.50 | 3.41 |
548 | 600 | 4.519213 | CCATGGGACTAAAACGTATCCAA | 58.481 | 43.478 | 2.85 | 0.00 | 32.45 | 3.53 |
549 | 601 | 4.944930 | CCATGGGACTAAAACGTATCCAAA | 59.055 | 41.667 | 2.85 | 0.00 | 32.45 | 3.28 |
550 | 602 | 5.416326 | CCATGGGACTAAAACGTATCCAAAA | 59.584 | 40.000 | 2.85 | 0.00 | 32.45 | 2.44 |
551 | 603 | 6.096282 | CCATGGGACTAAAACGTATCCAAAAT | 59.904 | 38.462 | 2.85 | 0.00 | 32.45 | 1.82 |
552 | 604 | 6.746745 | TGGGACTAAAACGTATCCAAAATC | 57.253 | 37.500 | 0.00 | 0.00 | 32.45 | 2.17 |
553 | 605 | 6.239396 | TGGGACTAAAACGTATCCAAAATCA | 58.761 | 36.000 | 0.00 | 0.00 | 32.45 | 2.57 |
554 | 606 | 6.715718 | TGGGACTAAAACGTATCCAAAATCAA | 59.284 | 34.615 | 0.00 | 0.00 | 32.45 | 2.57 |
555 | 607 | 7.094549 | TGGGACTAAAACGTATCCAAAATCAAG | 60.095 | 37.037 | 0.00 | 0.00 | 32.45 | 3.02 |
556 | 608 | 7.094506 | GGGACTAAAACGTATCCAAAATCAAGT | 60.095 | 37.037 | 0.00 | 0.00 | 32.45 | 3.16 |
557 | 609 | 8.294577 | GGACTAAAACGTATCCAAAATCAAGTT | 58.705 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
584 | 636 | 7.346751 | TGAGCATTTATTATCCTTCAAACCC | 57.653 | 36.000 | 0.00 | 0.00 | 0.00 | 4.11 |
585 | 637 | 7.125391 | TGAGCATTTATTATCCTTCAAACCCT | 58.875 | 34.615 | 0.00 | 0.00 | 0.00 | 4.34 |
586 | 638 | 7.619302 | TGAGCATTTATTATCCTTCAAACCCTT | 59.381 | 33.333 | 0.00 | 0.00 | 0.00 | 3.95 |
587 | 639 | 8.011844 | AGCATTTATTATCCTTCAAACCCTTC | 57.988 | 34.615 | 0.00 | 0.00 | 0.00 | 3.46 |
588 | 640 | 7.619302 | AGCATTTATTATCCTTCAAACCCTTCA | 59.381 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
589 | 641 | 8.257306 | GCATTTATTATCCTTCAAACCCTTCAA | 58.743 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
592 | 644 | 9.768215 | TTTATTATCCTTCAAACCCTTCAATCT | 57.232 | 29.630 | 0.00 | 0.00 | 0.00 | 2.40 |
594 | 646 | 8.986929 | ATTATCCTTCAAACCCTTCAATCTAG | 57.013 | 34.615 | 0.00 | 0.00 | 0.00 | 2.43 |
595 | 647 | 6.642733 | ATCCTTCAAACCCTTCAATCTAGA | 57.357 | 37.500 | 0.00 | 0.00 | 0.00 | 2.43 |
596 | 648 | 6.448369 | TCCTTCAAACCCTTCAATCTAGAA | 57.552 | 37.500 | 0.00 | 0.00 | 0.00 | 2.10 |
597 | 649 | 6.238648 | TCCTTCAAACCCTTCAATCTAGAAC | 58.761 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
598 | 650 | 6.044404 | TCCTTCAAACCCTTCAATCTAGAACT | 59.956 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
599 | 651 | 6.372937 | CCTTCAAACCCTTCAATCTAGAACTC | 59.627 | 42.308 | 0.00 | 0.00 | 0.00 | 3.01 |
600 | 652 | 5.479306 | TCAAACCCTTCAATCTAGAACTCG | 58.521 | 41.667 | 0.00 | 0.00 | 0.00 | 4.18 |
601 | 653 | 3.528597 | ACCCTTCAATCTAGAACTCGC | 57.471 | 47.619 | 0.00 | 0.00 | 0.00 | 5.03 |
602 | 654 | 2.832129 | ACCCTTCAATCTAGAACTCGCA | 59.168 | 45.455 | 0.00 | 0.00 | 0.00 | 5.10 |
603 | 655 | 3.452627 | ACCCTTCAATCTAGAACTCGCAT | 59.547 | 43.478 | 0.00 | 0.00 | 0.00 | 4.73 |
604 | 656 | 3.806521 | CCCTTCAATCTAGAACTCGCATG | 59.193 | 47.826 | 0.00 | 0.00 | 0.00 | 4.06 |
605 | 657 | 4.437239 | CCTTCAATCTAGAACTCGCATGT | 58.563 | 43.478 | 0.00 | 0.00 | 0.00 | 3.21 |
606 | 658 | 4.269603 | CCTTCAATCTAGAACTCGCATGTG | 59.730 | 45.833 | 0.00 | 0.00 | 0.00 | 3.21 |
607 | 659 | 4.456280 | TCAATCTAGAACTCGCATGTGT | 57.544 | 40.909 | 6.09 | 0.00 | 0.00 | 3.72 |
608 | 660 | 4.820897 | TCAATCTAGAACTCGCATGTGTT | 58.179 | 39.130 | 6.09 | 3.50 | 34.68 | 3.32 |
609 | 661 | 5.961272 | TCAATCTAGAACTCGCATGTGTTA | 58.039 | 37.500 | 6.09 | 0.00 | 32.29 | 2.41 |
610 | 662 | 6.394809 | TCAATCTAGAACTCGCATGTGTTAA | 58.605 | 36.000 | 6.09 | 0.00 | 32.29 | 2.01 |
611 | 663 | 6.871492 | TCAATCTAGAACTCGCATGTGTTAAA | 59.129 | 34.615 | 6.09 | 0.00 | 32.29 | 1.52 |
612 | 664 | 6.893958 | ATCTAGAACTCGCATGTGTTAAAG | 57.106 | 37.500 | 6.09 | 0.00 | 32.29 | 1.85 |
613 | 665 | 6.020971 | TCTAGAACTCGCATGTGTTAAAGA | 57.979 | 37.500 | 6.09 | 6.98 | 32.29 | 2.52 |
614 | 666 | 6.452242 | TCTAGAACTCGCATGTGTTAAAGAA | 58.548 | 36.000 | 6.09 | 0.00 | 32.29 | 2.52 |
615 | 667 | 5.597813 | AGAACTCGCATGTGTTAAAGAAG | 57.402 | 39.130 | 6.09 | 0.00 | 32.29 | 2.85 |
616 | 668 | 5.297547 | AGAACTCGCATGTGTTAAAGAAGA | 58.702 | 37.500 | 6.09 | 0.00 | 32.29 | 2.87 |
617 | 669 | 5.406780 | AGAACTCGCATGTGTTAAAGAAGAG | 59.593 | 40.000 | 6.09 | 0.00 | 32.29 | 2.85 |
618 | 670 | 3.997021 | ACTCGCATGTGTTAAAGAAGAGG | 59.003 | 43.478 | 6.09 | 0.00 | 0.00 | 3.69 |
619 | 671 | 2.742053 | TCGCATGTGTTAAAGAAGAGGC | 59.258 | 45.455 | 6.09 | 0.00 | 0.00 | 4.70 |
620 | 672 | 2.483877 | CGCATGTGTTAAAGAAGAGGCA | 59.516 | 45.455 | 0.00 | 0.00 | 0.00 | 4.75 |
621 | 673 | 3.127548 | CGCATGTGTTAAAGAAGAGGCAT | 59.872 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
622 | 674 | 4.379813 | CGCATGTGTTAAAGAAGAGGCATT | 60.380 | 41.667 | 0.00 | 0.00 | 0.00 | 3.56 |
623 | 675 | 5.163764 | CGCATGTGTTAAAGAAGAGGCATTA | 60.164 | 40.000 | 0.00 | 0.00 | 0.00 | 1.90 |
624 | 676 | 6.620678 | GCATGTGTTAAAGAAGAGGCATTAA | 58.379 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
625 | 677 | 7.090173 | GCATGTGTTAAAGAAGAGGCATTAAA | 58.910 | 34.615 | 0.00 | 0.00 | 0.00 | 1.52 |
626 | 678 | 7.761249 | GCATGTGTTAAAGAAGAGGCATTAAAT | 59.239 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
627 | 679 | 9.079833 | CATGTGTTAAAGAAGAGGCATTAAATG | 57.920 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
628 | 680 | 8.402798 | TGTGTTAAAGAAGAGGCATTAAATGA | 57.597 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
629 | 681 | 9.023962 | TGTGTTAAAGAAGAGGCATTAAATGAT | 57.976 | 29.630 | 0.00 | 0.00 | 0.00 | 2.45 |
630 | 682 | 9.294030 | GTGTTAAAGAAGAGGCATTAAATGATG | 57.706 | 33.333 | 0.00 | 0.00 | 0.00 | 3.07 |
631 | 683 | 9.241919 | TGTTAAAGAAGAGGCATTAAATGATGA | 57.758 | 29.630 | 0.00 | 0.00 | 0.00 | 2.92 |
632 | 684 | 9.727627 | GTTAAAGAAGAGGCATTAAATGATGAG | 57.272 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
633 | 685 | 9.685276 | TTAAAGAAGAGGCATTAAATGATGAGA | 57.315 | 29.630 | 0.00 | 0.00 | 0.00 | 3.27 |
634 | 686 | 7.804843 | AAGAAGAGGCATTAAATGATGAGAG | 57.195 | 36.000 | 0.00 | 0.00 | 0.00 | 3.20 |
635 | 687 | 7.134362 | AGAAGAGGCATTAAATGATGAGAGA | 57.866 | 36.000 | 0.00 | 0.00 | 0.00 | 3.10 |
636 | 688 | 7.218614 | AGAAGAGGCATTAAATGATGAGAGAG | 58.781 | 38.462 | 0.00 | 0.00 | 0.00 | 3.20 |
637 | 689 | 6.744175 | AGAGGCATTAAATGATGAGAGAGA | 57.256 | 37.500 | 0.00 | 0.00 | 0.00 | 3.10 |
638 | 690 | 6.761312 | AGAGGCATTAAATGATGAGAGAGAG | 58.239 | 40.000 | 0.00 | 0.00 | 0.00 | 3.20 |
639 | 691 | 5.867330 | AGGCATTAAATGATGAGAGAGAGG | 58.133 | 41.667 | 0.00 | 0.00 | 0.00 | 3.69 |
640 | 692 | 5.002516 | GGCATTAAATGATGAGAGAGAGGG | 58.997 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
641 | 693 | 4.455190 | GCATTAAATGATGAGAGAGAGGGC | 59.545 | 45.833 | 0.00 | 0.00 | 0.00 | 5.19 |
642 | 694 | 5.745476 | GCATTAAATGATGAGAGAGAGGGCT | 60.745 | 44.000 | 0.00 | 0.00 | 0.00 | 5.19 |
643 | 695 | 6.519721 | GCATTAAATGATGAGAGAGAGGGCTA | 60.520 | 42.308 | 0.00 | 0.00 | 0.00 | 3.93 |
644 | 696 | 7.448420 | CATTAAATGATGAGAGAGAGGGCTAA | 58.552 | 38.462 | 0.00 | 0.00 | 0.00 | 3.09 |
645 | 697 | 7.623999 | TTAAATGATGAGAGAGAGGGCTAAT | 57.376 | 36.000 | 0.00 | 0.00 | 0.00 | 1.73 |
646 | 698 | 8.727100 | TTAAATGATGAGAGAGAGGGCTAATA | 57.273 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
647 | 699 | 6.603940 | AATGATGAGAGAGAGGGCTAATAC | 57.396 | 41.667 | 0.00 | 0.00 | 0.00 | 1.89 |
648 | 700 | 5.066913 | TGATGAGAGAGAGGGCTAATACA | 57.933 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
649 | 701 | 5.649265 | TGATGAGAGAGAGGGCTAATACAT | 58.351 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
650 | 702 | 6.794534 | TGATGAGAGAGAGGGCTAATACATA | 58.205 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
651 | 703 | 7.417554 | TGATGAGAGAGAGGGCTAATACATAT | 58.582 | 38.462 | 0.00 | 0.00 | 0.00 | 1.78 |
652 | 704 | 7.898100 | TGATGAGAGAGAGGGCTAATACATATT | 59.102 | 37.037 | 0.00 | 0.00 | 0.00 | 1.28 |
653 | 705 | 8.677870 | ATGAGAGAGAGGGCTAATACATATTT | 57.322 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
654 | 706 | 8.497910 | TGAGAGAGAGGGCTAATACATATTTT | 57.502 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
655 | 707 | 9.601810 | TGAGAGAGAGGGCTAATACATATTTTA | 57.398 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
657 | 709 | 9.608718 | AGAGAGAGGGCTAATACATATTTTAGT | 57.391 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
700 | 752 | 8.478775 | AAAATTTTAGCCTCAAAACTAGTCCT | 57.521 | 30.769 | 0.37 | 0.00 | 30.57 | 3.85 |
701 | 753 | 9.582648 | AAAATTTTAGCCTCAAAACTAGTCCTA | 57.417 | 29.630 | 0.37 | 0.00 | 30.57 | 2.94 |
702 | 754 | 8.794335 | AATTTTAGCCTCAAAACTAGTCCTAG | 57.206 | 34.615 | 0.00 | 0.00 | 39.04 | 3.02 |
703 | 755 | 3.897141 | AGCCTCAAAACTAGTCCTAGC | 57.103 | 47.619 | 0.00 | 0.00 | 36.66 | 3.42 |
704 | 756 | 2.502130 | AGCCTCAAAACTAGTCCTAGCC | 59.498 | 50.000 | 0.00 | 0.00 | 36.66 | 3.93 |
705 | 757 | 2.502130 | GCCTCAAAACTAGTCCTAGCCT | 59.498 | 50.000 | 0.00 | 0.00 | 36.66 | 4.58 |
706 | 758 | 3.431068 | GCCTCAAAACTAGTCCTAGCCTC | 60.431 | 52.174 | 0.00 | 0.00 | 36.66 | 4.70 |
707 | 759 | 4.027437 | CCTCAAAACTAGTCCTAGCCTCT | 58.973 | 47.826 | 0.00 | 0.00 | 36.66 | 3.69 |
708 | 760 | 4.098807 | CCTCAAAACTAGTCCTAGCCTCTC | 59.901 | 50.000 | 0.00 | 0.00 | 36.66 | 3.20 |
709 | 761 | 4.936802 | TCAAAACTAGTCCTAGCCTCTCT | 58.063 | 43.478 | 0.00 | 0.00 | 36.66 | 3.10 |
710 | 762 | 5.334421 | TCAAAACTAGTCCTAGCCTCTCTT | 58.666 | 41.667 | 0.00 | 0.00 | 36.66 | 2.85 |
711 | 763 | 5.780793 | TCAAAACTAGTCCTAGCCTCTCTTT | 59.219 | 40.000 | 0.00 | 0.00 | 36.66 | 2.52 |
712 | 764 | 6.952358 | TCAAAACTAGTCCTAGCCTCTCTTTA | 59.048 | 38.462 | 0.00 | 0.00 | 36.66 | 1.85 |
713 | 765 | 7.122948 | TCAAAACTAGTCCTAGCCTCTCTTTAG | 59.877 | 40.741 | 0.00 | 0.00 | 36.66 | 1.85 |
714 | 766 | 5.720486 | ACTAGTCCTAGCCTCTCTTTAGT | 57.280 | 43.478 | 1.22 | 0.00 | 36.66 | 2.24 |
715 | 767 | 5.687780 | ACTAGTCCTAGCCTCTCTTTAGTC | 58.312 | 45.833 | 1.22 | 0.00 | 36.66 | 2.59 |
716 | 768 | 4.594675 | AGTCCTAGCCTCTCTTTAGTCA | 57.405 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
717 | 769 | 4.532834 | AGTCCTAGCCTCTCTTTAGTCAG | 58.467 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
718 | 770 | 3.634910 | GTCCTAGCCTCTCTTTAGTCAGG | 59.365 | 52.174 | 0.00 | 0.00 | 0.00 | 3.86 |
719 | 771 | 3.528078 | TCCTAGCCTCTCTTTAGTCAGGA | 59.472 | 47.826 | 0.00 | 0.00 | 0.00 | 3.86 |
720 | 772 | 3.888930 | CCTAGCCTCTCTTTAGTCAGGAG | 59.111 | 52.174 | 0.00 | 0.00 | 0.00 | 3.69 |
721 | 773 | 3.466395 | AGCCTCTCTTTAGTCAGGAGT | 57.534 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
722 | 774 | 3.096092 | AGCCTCTCTTTAGTCAGGAGTG | 58.904 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
723 | 775 | 2.418060 | GCCTCTCTTTAGTCAGGAGTGC | 60.418 | 54.545 | 0.00 | 0.00 | 0.00 | 4.40 |
724 | 776 | 3.096092 | CCTCTCTTTAGTCAGGAGTGCT | 58.904 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
725 | 777 | 3.513515 | CCTCTCTTTAGTCAGGAGTGCTT | 59.486 | 47.826 | 0.00 | 0.00 | 0.00 | 3.91 |
726 | 778 | 4.493547 | CTCTCTTTAGTCAGGAGTGCTTG | 58.506 | 47.826 | 0.00 | 0.00 | 0.00 | 4.01 |
727 | 779 | 4.152647 | TCTCTTTAGTCAGGAGTGCTTGA | 58.847 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
728 | 780 | 4.588951 | TCTCTTTAGTCAGGAGTGCTTGAA | 59.411 | 41.667 | 0.00 | 0.00 | 31.41 | 2.69 |
729 | 781 | 5.070446 | TCTCTTTAGTCAGGAGTGCTTGAAA | 59.930 | 40.000 | 0.00 | 0.00 | 31.41 | 2.69 |
730 | 782 | 5.057149 | TCTTTAGTCAGGAGTGCTTGAAAC | 58.943 | 41.667 | 0.00 | 0.00 | 31.41 | 2.78 |
731 | 783 | 4.689612 | TTAGTCAGGAGTGCTTGAAACT | 57.310 | 40.909 | 0.00 | 0.00 | 31.41 | 2.66 |
732 | 784 | 3.567478 | AGTCAGGAGTGCTTGAAACTT | 57.433 | 42.857 | 0.00 | 0.00 | 31.41 | 2.66 |
733 | 785 | 3.891049 | AGTCAGGAGTGCTTGAAACTTT | 58.109 | 40.909 | 0.00 | 0.00 | 31.41 | 2.66 |
734 | 786 | 5.036117 | AGTCAGGAGTGCTTGAAACTTTA | 57.964 | 39.130 | 0.00 | 0.00 | 31.41 | 1.85 |
735 | 787 | 5.059833 | AGTCAGGAGTGCTTGAAACTTTAG | 58.940 | 41.667 | 0.00 | 0.00 | 31.41 | 1.85 |
736 | 788 | 4.816925 | GTCAGGAGTGCTTGAAACTTTAGT | 59.183 | 41.667 | 0.00 | 0.00 | 31.41 | 2.24 |
737 | 789 | 5.050023 | GTCAGGAGTGCTTGAAACTTTAGTC | 60.050 | 44.000 | 0.00 | 0.00 | 31.41 | 2.59 |
738 | 790 | 5.059833 | CAGGAGTGCTTGAAACTTTAGTCT | 58.940 | 41.667 | 0.00 | 0.00 | 0.00 | 3.24 |
739 | 791 | 5.529060 | CAGGAGTGCTTGAAACTTTAGTCTT | 59.471 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
740 | 792 | 6.038714 | CAGGAGTGCTTGAAACTTTAGTCTTT | 59.961 | 38.462 | 0.00 | 0.00 | 0.00 | 2.52 |
741 | 793 | 7.226720 | CAGGAGTGCTTGAAACTTTAGTCTTTA | 59.773 | 37.037 | 0.00 | 0.00 | 0.00 | 1.85 |
742 | 794 | 7.773690 | AGGAGTGCTTGAAACTTTAGTCTTTAA | 59.226 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
743 | 795 | 8.403236 | GGAGTGCTTGAAACTTTAGTCTTTAAA | 58.597 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
744 | 796 | 9.783256 | GAGTGCTTGAAACTTTAGTCTTTAAAA | 57.217 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
783 | 835 | 9.981460 | AATCAGACTAAAAATAGTCCTTTGGAT | 57.019 | 29.630 | 11.35 | 5.94 | 45.66 | 3.41 |
784 | 836 | 9.620259 | ATCAGACTAAAAATAGTCCTTTGGATC | 57.380 | 33.333 | 11.35 | 0.00 | 45.66 | 3.36 |
785 | 837 | 8.602424 | TCAGACTAAAAATAGTCCTTTGGATCA | 58.398 | 33.333 | 11.35 | 0.00 | 45.66 | 2.92 |
786 | 838 | 9.231297 | CAGACTAAAAATAGTCCTTTGGATCAA | 57.769 | 33.333 | 11.35 | 0.00 | 45.66 | 2.57 |
787 | 839 | 9.454859 | AGACTAAAAATAGTCCTTTGGATCAAG | 57.545 | 33.333 | 11.35 | 0.00 | 45.66 | 3.02 |
788 | 840 | 8.056407 | ACTAAAAATAGTCCTTTGGATCAAGC | 57.944 | 34.615 | 0.00 | 0.00 | 32.73 | 4.01 |
789 | 841 | 6.916360 | AAAAATAGTCCTTTGGATCAAGCA | 57.084 | 33.333 | 0.00 | 0.00 | 32.73 | 3.91 |
790 | 842 | 5.904362 | AAATAGTCCTTTGGATCAAGCAC | 57.096 | 39.130 | 0.00 | 0.00 | 32.73 | 4.40 |
791 | 843 | 2.206576 | AGTCCTTTGGATCAAGCACC | 57.793 | 50.000 | 0.00 | 0.00 | 32.73 | 5.01 |
792 | 844 | 1.707427 | AGTCCTTTGGATCAAGCACCT | 59.293 | 47.619 | 0.00 | 0.00 | 32.73 | 4.00 |
793 | 845 | 2.108952 | AGTCCTTTGGATCAAGCACCTT | 59.891 | 45.455 | 0.00 | 0.00 | 32.73 | 3.50 |
796 | 848 | 3.160269 | CCTTTGGATCAAGCACCTTCTT | 58.840 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
850 | 909 | 0.693049 | GTTTCAGCCTCCTTCCTCCA | 59.307 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1479 | 1544 | 3.774959 | GACCGGCTGCGTCGATGAT | 62.775 | 63.158 | 9.31 | 0.00 | 29.41 | 2.45 |
1483 | 1548 | 3.257561 | GCTGCGTCGATGATGCGT | 61.258 | 61.111 | 9.31 | 0.00 | 46.39 | 5.24 |
1558 | 1623 | 1.006400 | TGACTCATCTCTCCAGAGCCA | 59.994 | 52.381 | 0.00 | 0.00 | 41.80 | 4.75 |
1573 | 1638 | 3.841078 | CCAGGGATTGGTCAGGGT | 58.159 | 61.111 | 0.00 | 0.00 | 42.41 | 4.34 |
1641 | 1706 | 1.137825 | CACTTCTCTCGCCTCGGTC | 59.862 | 63.158 | 0.00 | 0.00 | 0.00 | 4.79 |
1682 | 1747 | 1.682451 | GGTACCATGGCCGAGCTACA | 61.682 | 60.000 | 13.04 | 0.00 | 0.00 | 2.74 |
1683 | 1748 | 0.177141 | GTACCATGGCCGAGCTACAA | 59.823 | 55.000 | 13.04 | 0.00 | 0.00 | 2.41 |
1695 | 1760 | 2.166270 | GCTACAACAGCTGCTGTCC | 58.834 | 57.895 | 33.00 | 14.24 | 44.62 | 4.02 |
1724 | 1789 | 4.834453 | CTCGGGCCAGCAGCTCAG | 62.834 | 72.222 | 4.39 | 0.00 | 45.13 | 3.35 |
1779 | 1844 | 1.127343 | GCAGTGAGGGAAGGCTAGAT | 58.873 | 55.000 | 0.00 | 0.00 | 0.00 | 1.98 |
1797 | 1862 | 4.917906 | AGATGAGGCCTGTAAAACTCTT | 57.082 | 40.909 | 12.00 | 0.00 | 0.00 | 2.85 |
1899 | 1964 | 1.132453 | CATGACATTGCCAGTGAGCTG | 59.868 | 52.381 | 0.00 | 0.00 | 42.22 | 4.24 |
1900 | 1965 | 1.239296 | TGACATTGCCAGTGAGCTGC | 61.239 | 55.000 | 0.00 | 0.00 | 41.26 | 5.25 |
1918 | 1983 | 1.303074 | CTGGGATCCATGGCATCCG | 60.303 | 63.158 | 24.90 | 15.13 | 40.91 | 4.18 |
2202 | 2267 | 0.035439 | TTCCATCCGAAGCCCTTCAC | 60.035 | 55.000 | 8.58 | 0.00 | 39.46 | 3.18 |
2655 | 2720 | 1.212751 | GGAAGGCGCCAATGTTCAC | 59.787 | 57.895 | 31.54 | 13.09 | 0.00 | 3.18 |
2697 | 2762 | 3.243336 | CGTGGTAGTTGTGCTCTTAGTC | 58.757 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
3032 | 3097 | 6.915786 | AGATCCTTGCTATAACATTTTCCCT | 58.084 | 36.000 | 0.00 | 0.00 | 0.00 | 4.20 |
3034 | 3099 | 6.773976 | TCCTTGCTATAACATTTTCCCTTG | 57.226 | 37.500 | 0.00 | 0.00 | 0.00 | 3.61 |
3119 | 3184 | 7.287696 | ACCTTTTGAATATCATCCCACCATTAC | 59.712 | 37.037 | 0.00 | 0.00 | 0.00 | 1.89 |
3333 | 3398 | 8.534496 | CCCATGGACTAGATTTGAAAGAAATTT | 58.466 | 33.333 | 15.22 | 0.00 | 0.00 | 1.82 |
3562 | 3633 | 5.856126 | TTTCTGTATCCGTTTTAGCACTG | 57.144 | 39.130 | 0.00 | 0.00 | 0.00 | 3.66 |
3762 | 3879 | 4.461431 | AGAATGACATTCAGCTCAAATGCA | 59.539 | 37.500 | 26.05 | 14.05 | 41.71 | 3.96 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
97 | 98 | 8.287439 | TGGGTTTATTTATCACACAATCGAAT | 57.713 | 30.769 | 0.00 | 0.00 | 0.00 | 3.34 |
104 | 105 | 7.445121 | TGCATTTTGGGTTTATTTATCACACA | 58.555 | 30.769 | 0.00 | 0.00 | 0.00 | 3.72 |
106 | 107 | 7.675062 | ACTGCATTTTGGGTTTATTTATCACA | 58.325 | 30.769 | 0.00 | 0.00 | 0.00 | 3.58 |
156 | 157 | 8.792633 | CAAAGTTGTATGGTTTTATCTTGAGGA | 58.207 | 33.333 | 0.00 | 0.00 | 0.00 | 3.71 |
188 | 201 | 2.902484 | CGAAACTAAATGCTGCGTTGTC | 59.098 | 45.455 | 8.03 | 1.04 | 0.00 | 3.18 |
194 | 207 | 2.729156 | GCCAGTCGAAACTAAATGCTGC | 60.729 | 50.000 | 0.00 | 0.00 | 33.25 | 5.25 |
195 | 208 | 2.744202 | AGCCAGTCGAAACTAAATGCTG | 59.256 | 45.455 | 0.00 | 0.00 | 33.25 | 4.41 |
209 | 222 | 1.610886 | GGGTTTCACCACTAGCCAGTC | 60.611 | 57.143 | 0.00 | 0.00 | 41.02 | 3.51 |
213 | 226 | 3.359695 | TTATGGGTTTCACCACTAGCC | 57.640 | 47.619 | 0.00 | 0.00 | 44.72 | 3.93 |
233 | 253 | 9.821240 | TGCTATCCATATACCAAAACCATAAAT | 57.179 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
234 | 254 | 9.647918 | TTGCTATCCATATACCAAAACCATAAA | 57.352 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
236 | 256 | 8.444783 | ACTTGCTATCCATATACCAAAACCATA | 58.555 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
237 | 257 | 7.297614 | ACTTGCTATCCATATACCAAAACCAT | 58.702 | 34.615 | 0.00 | 0.00 | 0.00 | 3.55 |
240 | 260 | 9.516314 | GAAAACTTGCTATCCATATACCAAAAC | 57.484 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
241 | 261 | 9.249053 | TGAAAACTTGCTATCCATATACCAAAA | 57.751 | 29.630 | 0.00 | 0.00 | 0.00 | 2.44 |
242 | 262 | 8.815565 | TGAAAACTTGCTATCCATATACCAAA | 57.184 | 30.769 | 0.00 | 0.00 | 0.00 | 3.28 |
243 | 263 | 8.849168 | CATGAAAACTTGCTATCCATATACCAA | 58.151 | 33.333 | 0.00 | 0.00 | 0.00 | 3.67 |
244 | 264 | 7.040478 | GCATGAAAACTTGCTATCCATATACCA | 60.040 | 37.037 | 0.00 | 0.00 | 0.00 | 3.25 |
245 | 265 | 7.040478 | TGCATGAAAACTTGCTATCCATATACC | 60.040 | 37.037 | 0.00 | 0.00 | 0.00 | 2.73 |
246 | 266 | 7.874940 | TGCATGAAAACTTGCTATCCATATAC | 58.125 | 34.615 | 0.00 | 0.00 | 0.00 | 1.47 |
248 | 268 | 6.964807 | TGCATGAAAACTTGCTATCCATAT | 57.035 | 33.333 | 0.00 | 0.00 | 0.00 | 1.78 |
252 | 272 | 4.500375 | GGGATGCATGAAAACTTGCTATCC | 60.500 | 45.833 | 2.46 | 18.67 | 35.86 | 2.59 |
256 | 276 | 2.532843 | AGGGATGCATGAAAACTTGCT | 58.467 | 42.857 | 2.46 | 0.00 | 0.00 | 3.91 |
257 | 277 | 3.256558 | GAAGGGATGCATGAAAACTTGC | 58.743 | 45.455 | 2.46 | 0.00 | 0.00 | 4.01 |
259 | 279 | 4.529377 | ACATGAAGGGATGCATGAAAACTT | 59.471 | 37.500 | 2.46 | 0.52 | 43.43 | 2.66 |
263 | 283 | 3.699413 | TGACATGAAGGGATGCATGAAA | 58.301 | 40.909 | 2.46 | 0.00 | 43.43 | 2.69 |
266 | 286 | 4.665833 | ATTTGACATGAAGGGATGCATG | 57.334 | 40.909 | 2.46 | 0.00 | 45.56 | 4.06 |
267 | 287 | 5.424757 | CAAATTTGACATGAAGGGATGCAT | 58.575 | 37.500 | 13.08 | 0.00 | 0.00 | 3.96 |
270 | 290 | 5.410355 | ACCAAATTTGACATGAAGGGATG | 57.590 | 39.130 | 19.86 | 0.57 | 0.00 | 3.51 |
271 | 291 | 5.543405 | TGAACCAAATTTGACATGAAGGGAT | 59.457 | 36.000 | 19.86 | 0.00 | 0.00 | 3.85 |
272 | 292 | 4.898265 | TGAACCAAATTTGACATGAAGGGA | 59.102 | 37.500 | 19.86 | 0.00 | 0.00 | 4.20 |
273 | 293 | 5.212532 | TGAACCAAATTTGACATGAAGGG | 57.787 | 39.130 | 19.86 | 1.86 | 0.00 | 3.95 |
274 | 294 | 5.870978 | GGATGAACCAAATTTGACATGAAGG | 59.129 | 40.000 | 19.86 | 2.60 | 38.79 | 3.46 |
275 | 295 | 5.870978 | GGGATGAACCAAATTTGACATGAAG | 59.129 | 40.000 | 19.86 | 3.43 | 41.20 | 3.02 |
307 | 359 | 9.586150 | CAGCTAAAACGTGCTAATAATATCAAG | 57.414 | 33.333 | 0.00 | 0.00 | 37.81 | 3.02 |
318 | 370 | 1.000060 | ACGGACAGCTAAAACGTGCTA | 60.000 | 47.619 | 0.00 | 0.00 | 37.81 | 3.49 |
319 | 371 | 0.249741 | ACGGACAGCTAAAACGTGCT | 60.250 | 50.000 | 4.46 | 0.00 | 40.54 | 4.40 |
324 | 376 | 5.865552 | TCAGTACATAACGGACAGCTAAAAC | 59.134 | 40.000 | 0.00 | 0.00 | 0.00 | 2.43 |
325 | 377 | 6.028146 | TCAGTACATAACGGACAGCTAAAA | 57.972 | 37.500 | 0.00 | 0.00 | 0.00 | 1.52 |
330 | 382 | 5.796350 | AATTTCAGTACATAACGGACAGC | 57.204 | 39.130 | 0.00 | 0.00 | 31.58 | 4.40 |
332 | 384 | 9.438228 | TTCATAAATTTCAGTACATAACGGACA | 57.562 | 29.630 | 0.00 | 0.00 | 31.58 | 4.02 |
335 | 387 | 7.855904 | GCCTTCATAAATTTCAGTACATAACGG | 59.144 | 37.037 | 0.00 | 0.00 | 0.00 | 4.44 |
343 | 395 | 6.832520 | TGCAAGCCTTCATAAATTTCAGTA | 57.167 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
345 | 397 | 6.814644 | TCAATGCAAGCCTTCATAAATTTCAG | 59.185 | 34.615 | 0.00 | 0.00 | 0.00 | 3.02 |
346 | 398 | 6.699366 | TCAATGCAAGCCTTCATAAATTTCA | 58.301 | 32.000 | 0.00 | 0.00 | 0.00 | 2.69 |
347 | 399 | 7.599630 | TTCAATGCAAGCCTTCATAAATTTC | 57.400 | 32.000 | 0.00 | 0.00 | 0.00 | 2.17 |
348 | 400 | 9.841295 | ATATTCAATGCAAGCCTTCATAAATTT | 57.159 | 25.926 | 0.00 | 0.00 | 0.00 | 1.82 |
349 | 401 | 9.268268 | CATATTCAATGCAAGCCTTCATAAATT | 57.732 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
350 | 402 | 7.386848 | GCATATTCAATGCAAGCCTTCATAAAT | 59.613 | 33.333 | 5.14 | 0.00 | 44.00 | 1.40 |
351 | 403 | 6.702723 | GCATATTCAATGCAAGCCTTCATAAA | 59.297 | 34.615 | 5.14 | 0.00 | 44.00 | 1.40 |
352 | 404 | 6.218019 | GCATATTCAATGCAAGCCTTCATAA | 58.782 | 36.000 | 5.14 | 0.00 | 44.00 | 1.90 |
353 | 405 | 5.279106 | GGCATATTCAATGCAAGCCTTCATA | 60.279 | 40.000 | 11.69 | 0.00 | 46.21 | 2.15 |
354 | 406 | 4.502604 | GGCATATTCAATGCAAGCCTTCAT | 60.503 | 41.667 | 11.69 | 0.00 | 46.21 | 2.57 |
357 | 409 | 3.464111 | GGCATATTCAATGCAAGCCTT | 57.536 | 42.857 | 11.69 | 0.00 | 46.21 | 4.35 |
362 | 414 | 8.789825 | AAATGTTTTAGGCATATTCAATGCAA | 57.210 | 26.923 | 11.69 | 0.00 | 46.21 | 4.08 |
382 | 434 | 9.584008 | AAGCTTATCCAATATCATCTGAAATGT | 57.416 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
386 | 438 | 9.857656 | AAAGAAGCTTATCCAATATCATCTGAA | 57.142 | 29.630 | 0.00 | 0.00 | 0.00 | 3.02 |
392 | 444 | 8.267183 | TCTGTCAAAGAAGCTTATCCAATATCA | 58.733 | 33.333 | 0.00 | 0.00 | 29.54 | 2.15 |
396 | 448 | 7.951347 | AATCTGTCAAAGAAGCTTATCCAAT | 57.049 | 32.000 | 0.00 | 0.00 | 38.79 | 3.16 |
450 | 502 | 7.099764 | GTCTGGACATAGTAACATATGATGGG | 58.900 | 42.308 | 10.38 | 0.00 | 36.76 | 4.00 |
457 | 509 | 7.712204 | TTGACTGTCTGGACATAGTAACATA | 57.288 | 36.000 | 9.51 | 0.00 | 41.01 | 2.29 |
494 | 546 | 4.038763 | CGTATCCAAGCACCCTCATAGTAA | 59.961 | 45.833 | 0.00 | 0.00 | 0.00 | 2.24 |
495 | 547 | 3.572682 | CGTATCCAAGCACCCTCATAGTA | 59.427 | 47.826 | 0.00 | 0.00 | 0.00 | 1.82 |
496 | 548 | 2.365617 | CGTATCCAAGCACCCTCATAGT | 59.634 | 50.000 | 0.00 | 0.00 | 0.00 | 2.12 |
497 | 549 | 2.365617 | ACGTATCCAAGCACCCTCATAG | 59.634 | 50.000 | 0.00 | 0.00 | 0.00 | 2.23 |
498 | 550 | 2.394632 | ACGTATCCAAGCACCCTCATA | 58.605 | 47.619 | 0.00 | 0.00 | 0.00 | 2.15 |
499 | 551 | 1.204146 | ACGTATCCAAGCACCCTCAT | 58.796 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
500 | 552 | 0.981183 | AACGTATCCAAGCACCCTCA | 59.019 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
501 | 553 | 2.109425 | AAACGTATCCAAGCACCCTC | 57.891 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
502 | 554 | 2.579410 | AAAACGTATCCAAGCACCCT | 57.421 | 45.000 | 0.00 | 0.00 | 0.00 | 4.34 |
503 | 555 | 3.340928 | ACTAAAACGTATCCAAGCACCC | 58.659 | 45.455 | 0.00 | 0.00 | 0.00 | 4.61 |
504 | 556 | 3.373130 | GGACTAAAACGTATCCAAGCACC | 59.627 | 47.826 | 0.00 | 0.00 | 0.00 | 5.01 |
505 | 557 | 3.373130 | GGGACTAAAACGTATCCAAGCAC | 59.627 | 47.826 | 0.00 | 0.00 | 32.45 | 4.40 |
506 | 558 | 3.008157 | TGGGACTAAAACGTATCCAAGCA | 59.992 | 43.478 | 0.00 | 0.00 | 32.45 | 3.91 |
507 | 559 | 3.602483 | TGGGACTAAAACGTATCCAAGC | 58.398 | 45.455 | 0.00 | 0.00 | 32.45 | 4.01 |
508 | 560 | 4.574828 | CCATGGGACTAAAACGTATCCAAG | 59.425 | 45.833 | 2.85 | 0.00 | 32.45 | 3.61 |
509 | 561 | 4.519213 | CCATGGGACTAAAACGTATCCAA | 58.481 | 43.478 | 2.85 | 0.00 | 32.45 | 3.53 |
510 | 562 | 3.118186 | CCCATGGGACTAAAACGTATCCA | 60.118 | 47.826 | 28.27 | 0.00 | 37.50 | 3.41 |
511 | 563 | 3.135167 | TCCCATGGGACTAAAACGTATCC | 59.865 | 47.826 | 30.62 | 0.00 | 39.76 | 2.59 |
512 | 564 | 4.411256 | TCCCATGGGACTAAAACGTATC | 57.589 | 45.455 | 30.62 | 0.00 | 39.76 | 2.24 |
524 | 576 | 3.135167 | GGATACGTTTTAGTCCCATGGGA | 59.865 | 47.826 | 30.62 | 30.62 | 42.90 | 4.37 |
525 | 577 | 3.118186 | TGGATACGTTTTAGTCCCATGGG | 60.118 | 47.826 | 26.30 | 26.30 | 42.51 | 4.00 |
526 | 578 | 4.145365 | TGGATACGTTTTAGTCCCATGG | 57.855 | 45.455 | 4.14 | 4.14 | 42.51 | 3.66 |
527 | 579 | 6.503589 | TTTTGGATACGTTTTAGTCCCATG | 57.496 | 37.500 | 0.00 | 0.00 | 42.51 | 3.66 |
528 | 580 | 6.887545 | TGATTTTGGATACGTTTTAGTCCCAT | 59.112 | 34.615 | 0.00 | 0.00 | 42.51 | 4.00 |
529 | 581 | 6.239396 | TGATTTTGGATACGTTTTAGTCCCA | 58.761 | 36.000 | 0.00 | 0.00 | 42.51 | 4.37 |
530 | 582 | 6.746745 | TGATTTTGGATACGTTTTAGTCCC | 57.253 | 37.500 | 0.00 | 0.00 | 42.51 | 4.46 |
531 | 583 | 7.813645 | ACTTGATTTTGGATACGTTTTAGTCC | 58.186 | 34.615 | 0.00 | 0.00 | 42.51 | 3.85 |
537 | 589 | 9.840427 | CTCAATAACTTGATTTTGGATACGTTT | 57.160 | 29.630 | 0.00 | 0.00 | 40.52 | 3.60 |
538 | 590 | 7.968405 | GCTCAATAACTTGATTTTGGATACGTT | 59.032 | 33.333 | 0.00 | 0.00 | 40.52 | 3.99 |
539 | 591 | 7.120579 | TGCTCAATAACTTGATTTTGGATACGT | 59.879 | 33.333 | 0.00 | 0.00 | 40.52 | 3.57 |
540 | 592 | 7.471721 | TGCTCAATAACTTGATTTTGGATACG | 58.528 | 34.615 | 0.00 | 0.00 | 40.52 | 3.06 |
541 | 593 | 9.807649 | AATGCTCAATAACTTGATTTTGGATAC | 57.192 | 29.630 | 0.00 | 0.00 | 40.52 | 2.24 |
558 | 610 | 8.424133 | GGGTTTGAAGGATAATAAATGCTCAAT | 58.576 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
559 | 611 | 7.619302 | AGGGTTTGAAGGATAATAAATGCTCAA | 59.381 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
560 | 612 | 7.125391 | AGGGTTTGAAGGATAATAAATGCTCA | 58.875 | 34.615 | 0.00 | 0.00 | 0.00 | 4.26 |
561 | 613 | 7.588497 | AGGGTTTGAAGGATAATAAATGCTC | 57.412 | 36.000 | 0.00 | 0.00 | 0.00 | 4.26 |
562 | 614 | 7.619302 | TGAAGGGTTTGAAGGATAATAAATGCT | 59.381 | 33.333 | 0.00 | 0.00 | 0.00 | 3.79 |
563 | 615 | 7.781056 | TGAAGGGTTTGAAGGATAATAAATGC | 58.219 | 34.615 | 0.00 | 0.00 | 0.00 | 3.56 |
566 | 618 | 9.768215 | AGATTGAAGGGTTTGAAGGATAATAAA | 57.232 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
569 | 621 | 8.781951 | TCTAGATTGAAGGGTTTGAAGGATAAT | 58.218 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
570 | 622 | 8.158025 | TCTAGATTGAAGGGTTTGAAGGATAA | 57.842 | 34.615 | 0.00 | 0.00 | 0.00 | 1.75 |
571 | 623 | 7.749377 | TCTAGATTGAAGGGTTTGAAGGATA | 57.251 | 36.000 | 0.00 | 0.00 | 0.00 | 2.59 |
572 | 624 | 6.642733 | TCTAGATTGAAGGGTTTGAAGGAT | 57.357 | 37.500 | 0.00 | 0.00 | 0.00 | 3.24 |
573 | 625 | 6.044404 | AGTTCTAGATTGAAGGGTTTGAAGGA | 59.956 | 38.462 | 0.00 | 0.00 | 0.00 | 3.36 |
574 | 626 | 6.241645 | AGTTCTAGATTGAAGGGTTTGAAGG | 58.758 | 40.000 | 0.00 | 0.00 | 0.00 | 3.46 |
575 | 627 | 6.091441 | CGAGTTCTAGATTGAAGGGTTTGAAG | 59.909 | 42.308 | 0.00 | 0.00 | 0.00 | 3.02 |
576 | 628 | 5.932303 | CGAGTTCTAGATTGAAGGGTTTGAA | 59.068 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
577 | 629 | 5.479306 | CGAGTTCTAGATTGAAGGGTTTGA | 58.521 | 41.667 | 0.00 | 0.00 | 0.00 | 2.69 |
578 | 630 | 4.093556 | GCGAGTTCTAGATTGAAGGGTTTG | 59.906 | 45.833 | 0.00 | 0.00 | 0.00 | 2.93 |
579 | 631 | 4.254492 | GCGAGTTCTAGATTGAAGGGTTT | 58.746 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
580 | 632 | 3.260884 | TGCGAGTTCTAGATTGAAGGGTT | 59.739 | 43.478 | 0.00 | 0.00 | 0.00 | 4.11 |
581 | 633 | 2.832129 | TGCGAGTTCTAGATTGAAGGGT | 59.168 | 45.455 | 0.00 | 0.00 | 0.00 | 4.34 |
582 | 634 | 3.526931 | TGCGAGTTCTAGATTGAAGGG | 57.473 | 47.619 | 0.00 | 0.00 | 0.00 | 3.95 |
583 | 635 | 4.269603 | CACATGCGAGTTCTAGATTGAAGG | 59.730 | 45.833 | 0.00 | 0.00 | 0.00 | 3.46 |
584 | 636 | 4.867047 | ACACATGCGAGTTCTAGATTGAAG | 59.133 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
585 | 637 | 4.820897 | ACACATGCGAGTTCTAGATTGAA | 58.179 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
586 | 638 | 4.456280 | ACACATGCGAGTTCTAGATTGA | 57.544 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
587 | 639 | 6.647212 | TTAACACATGCGAGTTCTAGATTG | 57.353 | 37.500 | 0.00 | 0.00 | 0.00 | 2.67 |
588 | 640 | 7.097192 | TCTTTAACACATGCGAGTTCTAGATT | 58.903 | 34.615 | 0.00 | 0.00 | 0.00 | 2.40 |
589 | 641 | 6.631016 | TCTTTAACACATGCGAGTTCTAGAT | 58.369 | 36.000 | 0.00 | 0.00 | 0.00 | 1.98 |
590 | 642 | 6.020971 | TCTTTAACACATGCGAGTTCTAGA | 57.979 | 37.500 | 0.00 | 0.00 | 0.00 | 2.43 |
591 | 643 | 6.586463 | TCTTCTTTAACACATGCGAGTTCTAG | 59.414 | 38.462 | 0.00 | 0.00 | 0.00 | 2.43 |
592 | 644 | 6.452242 | TCTTCTTTAACACATGCGAGTTCTA | 58.548 | 36.000 | 0.00 | 0.00 | 0.00 | 2.10 |
593 | 645 | 5.297547 | TCTTCTTTAACACATGCGAGTTCT | 58.702 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
594 | 646 | 5.389935 | CCTCTTCTTTAACACATGCGAGTTC | 60.390 | 44.000 | 0.00 | 0.00 | 0.00 | 3.01 |
595 | 647 | 4.452455 | CCTCTTCTTTAACACATGCGAGTT | 59.548 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
596 | 648 | 3.997021 | CCTCTTCTTTAACACATGCGAGT | 59.003 | 43.478 | 0.00 | 0.00 | 0.00 | 4.18 |
597 | 649 | 3.181516 | GCCTCTTCTTTAACACATGCGAG | 60.182 | 47.826 | 0.00 | 0.00 | 0.00 | 5.03 |
598 | 650 | 2.742053 | GCCTCTTCTTTAACACATGCGA | 59.258 | 45.455 | 0.00 | 0.00 | 0.00 | 5.10 |
599 | 651 | 2.483877 | TGCCTCTTCTTTAACACATGCG | 59.516 | 45.455 | 0.00 | 0.00 | 0.00 | 4.73 |
600 | 652 | 4.708726 | ATGCCTCTTCTTTAACACATGC | 57.291 | 40.909 | 0.00 | 0.00 | 0.00 | 4.06 |
601 | 653 | 9.079833 | CATTTAATGCCTCTTCTTTAACACATG | 57.920 | 33.333 | 0.00 | 0.00 | 0.00 | 3.21 |
602 | 654 | 9.023962 | TCATTTAATGCCTCTTCTTTAACACAT | 57.976 | 29.630 | 0.00 | 0.00 | 0.00 | 3.21 |
603 | 655 | 8.402798 | TCATTTAATGCCTCTTCTTTAACACA | 57.597 | 30.769 | 0.00 | 0.00 | 0.00 | 3.72 |
604 | 656 | 9.294030 | CATCATTTAATGCCTCTTCTTTAACAC | 57.706 | 33.333 | 0.00 | 0.00 | 0.00 | 3.32 |
605 | 657 | 9.241919 | TCATCATTTAATGCCTCTTCTTTAACA | 57.758 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
606 | 658 | 9.727627 | CTCATCATTTAATGCCTCTTCTTTAAC | 57.272 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
607 | 659 | 9.685276 | TCTCATCATTTAATGCCTCTTCTTTAA | 57.315 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
608 | 660 | 9.334947 | CTCTCATCATTTAATGCCTCTTCTTTA | 57.665 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
609 | 661 | 8.051535 | TCTCTCATCATTTAATGCCTCTTCTTT | 58.948 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
610 | 662 | 7.571919 | TCTCTCATCATTTAATGCCTCTTCTT | 58.428 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
611 | 663 | 7.070946 | TCTCTCTCATCATTTAATGCCTCTTCT | 59.929 | 37.037 | 0.00 | 0.00 | 0.00 | 2.85 |
612 | 664 | 7.215789 | TCTCTCTCATCATTTAATGCCTCTTC | 58.784 | 38.462 | 0.00 | 0.00 | 0.00 | 2.87 |
613 | 665 | 7.134362 | TCTCTCTCATCATTTAATGCCTCTT | 57.866 | 36.000 | 0.00 | 0.00 | 0.00 | 2.85 |
614 | 666 | 6.239657 | CCTCTCTCTCATCATTTAATGCCTCT | 60.240 | 42.308 | 0.00 | 0.00 | 0.00 | 3.69 |
615 | 667 | 5.933463 | CCTCTCTCTCATCATTTAATGCCTC | 59.067 | 44.000 | 0.00 | 0.00 | 0.00 | 4.70 |
616 | 668 | 5.221884 | CCCTCTCTCTCATCATTTAATGCCT | 60.222 | 44.000 | 0.00 | 0.00 | 0.00 | 4.75 |
617 | 669 | 5.002516 | CCCTCTCTCTCATCATTTAATGCC | 58.997 | 45.833 | 0.00 | 0.00 | 0.00 | 4.40 |
618 | 670 | 4.455190 | GCCCTCTCTCTCATCATTTAATGC | 59.545 | 45.833 | 0.00 | 0.00 | 0.00 | 3.56 |
619 | 671 | 5.867330 | AGCCCTCTCTCTCATCATTTAATG | 58.133 | 41.667 | 0.00 | 0.00 | 0.00 | 1.90 |
620 | 672 | 7.623999 | TTAGCCCTCTCTCTCATCATTTAAT | 57.376 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
621 | 673 | 7.623999 | ATTAGCCCTCTCTCTCATCATTTAA | 57.376 | 36.000 | 0.00 | 0.00 | 0.00 | 1.52 |
622 | 674 | 7.730332 | TGTATTAGCCCTCTCTCTCATCATTTA | 59.270 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
623 | 675 | 6.556495 | TGTATTAGCCCTCTCTCTCATCATTT | 59.444 | 38.462 | 0.00 | 0.00 | 0.00 | 2.32 |
624 | 676 | 6.080682 | TGTATTAGCCCTCTCTCTCATCATT | 58.919 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
625 | 677 | 5.649265 | TGTATTAGCCCTCTCTCTCATCAT | 58.351 | 41.667 | 0.00 | 0.00 | 0.00 | 2.45 |
626 | 678 | 5.066913 | TGTATTAGCCCTCTCTCTCATCA | 57.933 | 43.478 | 0.00 | 0.00 | 0.00 | 3.07 |
627 | 679 | 7.896383 | ATATGTATTAGCCCTCTCTCTCATC | 57.104 | 40.000 | 0.00 | 0.00 | 0.00 | 2.92 |
628 | 680 | 8.677870 | AAATATGTATTAGCCCTCTCTCTCAT | 57.322 | 34.615 | 0.00 | 0.00 | 0.00 | 2.90 |
629 | 681 | 8.497910 | AAAATATGTATTAGCCCTCTCTCTCA | 57.502 | 34.615 | 0.00 | 0.00 | 0.00 | 3.27 |
631 | 683 | 9.608718 | ACTAAAATATGTATTAGCCCTCTCTCT | 57.391 | 33.333 | 0.00 | 0.00 | 33.39 | 3.10 |
674 | 726 | 8.924303 | AGGACTAGTTTTGAGGCTAAAATTTTT | 58.076 | 29.630 | 9.06 | 0.00 | 32.71 | 1.94 |
675 | 727 | 8.478775 | AGGACTAGTTTTGAGGCTAAAATTTT | 57.521 | 30.769 | 8.75 | 8.75 | 32.71 | 1.82 |
676 | 728 | 9.232473 | CTAGGACTAGTTTTGAGGCTAAAATTT | 57.768 | 33.333 | 0.00 | 0.00 | 32.71 | 1.82 |
677 | 729 | 7.337184 | GCTAGGACTAGTTTTGAGGCTAAAATT | 59.663 | 37.037 | 0.00 | 1.16 | 35.65 | 1.82 |
678 | 730 | 6.824196 | GCTAGGACTAGTTTTGAGGCTAAAAT | 59.176 | 38.462 | 0.00 | 0.00 | 35.65 | 1.82 |
679 | 731 | 6.171213 | GCTAGGACTAGTTTTGAGGCTAAAA | 58.829 | 40.000 | 0.00 | 0.00 | 35.65 | 1.52 |
680 | 732 | 5.338137 | GGCTAGGACTAGTTTTGAGGCTAAA | 60.338 | 44.000 | 0.00 | 0.00 | 35.65 | 1.85 |
681 | 733 | 4.161754 | GGCTAGGACTAGTTTTGAGGCTAA | 59.838 | 45.833 | 0.00 | 0.00 | 35.65 | 3.09 |
682 | 734 | 3.705072 | GGCTAGGACTAGTTTTGAGGCTA | 59.295 | 47.826 | 0.00 | 0.00 | 35.65 | 3.93 |
683 | 735 | 2.502130 | GGCTAGGACTAGTTTTGAGGCT | 59.498 | 50.000 | 0.00 | 0.00 | 35.65 | 4.58 |
684 | 736 | 2.502130 | AGGCTAGGACTAGTTTTGAGGC | 59.498 | 50.000 | 0.00 | 5.24 | 35.65 | 4.70 |
685 | 737 | 4.027437 | AGAGGCTAGGACTAGTTTTGAGG | 58.973 | 47.826 | 0.00 | 0.00 | 35.65 | 3.86 |
686 | 738 | 4.953579 | AGAGAGGCTAGGACTAGTTTTGAG | 59.046 | 45.833 | 0.00 | 0.00 | 35.65 | 3.02 |
687 | 739 | 4.936802 | AGAGAGGCTAGGACTAGTTTTGA | 58.063 | 43.478 | 0.00 | 0.00 | 35.65 | 2.69 |
688 | 740 | 5.669164 | AAGAGAGGCTAGGACTAGTTTTG | 57.331 | 43.478 | 0.00 | 0.00 | 35.65 | 2.44 |
689 | 741 | 6.955267 | ACTAAAGAGAGGCTAGGACTAGTTTT | 59.045 | 38.462 | 0.00 | 0.00 | 35.65 | 2.43 |
690 | 742 | 6.495847 | ACTAAAGAGAGGCTAGGACTAGTTT | 58.504 | 40.000 | 0.00 | 2.90 | 35.65 | 2.66 |
691 | 743 | 6.082228 | ACTAAAGAGAGGCTAGGACTAGTT | 57.918 | 41.667 | 0.00 | 0.00 | 35.65 | 2.24 |
692 | 744 | 5.192121 | TGACTAAAGAGAGGCTAGGACTAGT | 59.808 | 44.000 | 0.00 | 0.00 | 35.65 | 2.57 |
693 | 745 | 5.686753 | TGACTAAAGAGAGGCTAGGACTAG | 58.313 | 45.833 | 1.98 | 1.98 | 36.29 | 2.57 |
694 | 746 | 5.398126 | CCTGACTAAAGAGAGGCTAGGACTA | 60.398 | 48.000 | 0.00 | 0.00 | 29.08 | 2.59 |
695 | 747 | 4.532834 | CTGACTAAAGAGAGGCTAGGACT | 58.467 | 47.826 | 0.00 | 0.00 | 0.00 | 3.85 |
696 | 748 | 3.634910 | CCTGACTAAAGAGAGGCTAGGAC | 59.365 | 52.174 | 0.00 | 0.00 | 29.08 | 3.85 |
697 | 749 | 3.528078 | TCCTGACTAAAGAGAGGCTAGGA | 59.472 | 47.826 | 0.00 | 0.00 | 32.53 | 2.94 |
698 | 750 | 3.888930 | CTCCTGACTAAAGAGAGGCTAGG | 59.111 | 52.174 | 0.00 | 0.00 | 0.00 | 3.02 |
699 | 751 | 4.338118 | CACTCCTGACTAAAGAGAGGCTAG | 59.662 | 50.000 | 0.00 | 0.00 | 0.00 | 3.42 |
700 | 752 | 4.274147 | CACTCCTGACTAAAGAGAGGCTA | 58.726 | 47.826 | 0.00 | 0.00 | 0.00 | 3.93 |
701 | 753 | 3.096092 | CACTCCTGACTAAAGAGAGGCT | 58.904 | 50.000 | 0.00 | 0.00 | 0.00 | 4.58 |
702 | 754 | 2.418060 | GCACTCCTGACTAAAGAGAGGC | 60.418 | 54.545 | 0.00 | 0.00 | 0.00 | 4.70 |
703 | 755 | 3.096092 | AGCACTCCTGACTAAAGAGAGG | 58.904 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
704 | 756 | 4.219507 | TCAAGCACTCCTGACTAAAGAGAG | 59.780 | 45.833 | 0.00 | 0.00 | 0.00 | 3.20 |
705 | 757 | 4.152647 | TCAAGCACTCCTGACTAAAGAGA | 58.847 | 43.478 | 0.00 | 0.00 | 0.00 | 3.10 |
706 | 758 | 4.527509 | TCAAGCACTCCTGACTAAAGAG | 57.472 | 45.455 | 0.00 | 0.00 | 0.00 | 2.85 |
707 | 759 | 4.955811 | TTCAAGCACTCCTGACTAAAGA | 57.044 | 40.909 | 0.00 | 0.00 | 0.00 | 2.52 |
708 | 760 | 5.059833 | AGTTTCAAGCACTCCTGACTAAAG | 58.940 | 41.667 | 0.00 | 0.00 | 0.00 | 1.85 |
709 | 761 | 5.036117 | AGTTTCAAGCACTCCTGACTAAA | 57.964 | 39.130 | 0.00 | 0.00 | 0.00 | 1.85 |
710 | 762 | 4.689612 | AGTTTCAAGCACTCCTGACTAA | 57.310 | 40.909 | 0.00 | 0.00 | 0.00 | 2.24 |
711 | 763 | 4.689612 | AAGTTTCAAGCACTCCTGACTA | 57.310 | 40.909 | 0.00 | 0.00 | 0.00 | 2.59 |
712 | 764 | 3.567478 | AAGTTTCAAGCACTCCTGACT | 57.433 | 42.857 | 0.00 | 0.00 | 0.00 | 3.41 |
713 | 765 | 4.816925 | ACTAAAGTTTCAAGCACTCCTGAC | 59.183 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
714 | 766 | 5.036117 | ACTAAAGTTTCAAGCACTCCTGA | 57.964 | 39.130 | 0.00 | 0.00 | 0.00 | 3.86 |
715 | 767 | 5.059833 | AGACTAAAGTTTCAAGCACTCCTG | 58.940 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
716 | 768 | 5.297569 | AGACTAAAGTTTCAAGCACTCCT | 57.702 | 39.130 | 0.00 | 0.00 | 0.00 | 3.69 |
717 | 769 | 6.378710 | AAAGACTAAAGTTTCAAGCACTCC | 57.621 | 37.500 | 0.00 | 0.00 | 0.00 | 3.85 |
718 | 770 | 9.783256 | TTTTAAAGACTAAAGTTTCAAGCACTC | 57.217 | 29.630 | 0.00 | 0.00 | 0.00 | 3.51 |
757 | 809 | 9.981460 | ATCCAAAGGACTATTTTTAGTCTGATT | 57.019 | 29.630 | 11.69 | 4.07 | 44.35 | 2.57 |
758 | 810 | 9.620259 | GATCCAAAGGACTATTTTTAGTCTGAT | 57.380 | 33.333 | 11.69 | 7.35 | 44.35 | 2.90 |
759 | 811 | 8.602424 | TGATCCAAAGGACTATTTTTAGTCTGA | 58.398 | 33.333 | 11.69 | 3.95 | 44.35 | 3.27 |
760 | 812 | 8.792830 | TGATCCAAAGGACTATTTTTAGTCTG | 57.207 | 34.615 | 11.69 | 4.29 | 44.35 | 3.51 |
761 | 813 | 9.454859 | CTTGATCCAAAGGACTATTTTTAGTCT | 57.545 | 33.333 | 11.69 | 0.00 | 44.35 | 3.24 |
762 | 814 | 8.184848 | GCTTGATCCAAAGGACTATTTTTAGTC | 58.815 | 37.037 | 4.87 | 4.87 | 44.23 | 2.59 |
763 | 815 | 7.669722 | TGCTTGATCCAAAGGACTATTTTTAGT | 59.330 | 33.333 | 0.00 | 0.00 | 32.98 | 2.24 |
764 | 816 | 7.970614 | GTGCTTGATCCAAAGGACTATTTTTAG | 59.029 | 37.037 | 9.37 | 0.00 | 43.09 | 1.85 |
765 | 817 | 7.093945 | GGTGCTTGATCCAAAGGACTATTTTTA | 60.094 | 37.037 | 14.38 | 0.00 | 45.04 | 1.52 |
766 | 818 | 6.295292 | GGTGCTTGATCCAAAGGACTATTTTT | 60.295 | 38.462 | 14.38 | 0.00 | 45.04 | 1.94 |
767 | 819 | 5.185828 | GGTGCTTGATCCAAAGGACTATTTT | 59.814 | 40.000 | 14.38 | 0.00 | 45.04 | 1.82 |
768 | 820 | 4.706962 | GGTGCTTGATCCAAAGGACTATTT | 59.293 | 41.667 | 14.38 | 0.00 | 45.04 | 1.40 |
769 | 821 | 4.018050 | AGGTGCTTGATCCAAAGGACTATT | 60.018 | 41.667 | 14.38 | 2.40 | 45.04 | 1.73 |
770 | 822 | 3.525199 | AGGTGCTTGATCCAAAGGACTAT | 59.475 | 43.478 | 14.38 | 4.49 | 45.04 | 2.12 |
771 | 823 | 2.912956 | AGGTGCTTGATCCAAAGGACTA | 59.087 | 45.455 | 14.38 | 0.00 | 45.04 | 2.59 |
772 | 824 | 1.707427 | AGGTGCTTGATCCAAAGGACT | 59.293 | 47.619 | 14.38 | 2.22 | 45.04 | 3.85 |
773 | 825 | 2.206576 | AGGTGCTTGATCCAAAGGAC | 57.793 | 50.000 | 8.42 | 8.42 | 44.99 | 3.85 |
774 | 826 | 2.376518 | AGAAGGTGCTTGATCCAAAGGA | 59.623 | 45.455 | 0.00 | 0.00 | 35.55 | 3.36 |
775 | 827 | 2.800250 | AGAAGGTGCTTGATCCAAAGG | 58.200 | 47.619 | 0.00 | 0.00 | 0.00 | 3.11 |
776 | 828 | 4.038402 | ACAAAGAAGGTGCTTGATCCAAAG | 59.962 | 41.667 | 0.00 | 0.00 | 0.00 | 2.77 |
777 | 829 | 3.960102 | ACAAAGAAGGTGCTTGATCCAAA | 59.040 | 39.130 | 0.00 | 0.00 | 0.00 | 3.28 |
778 | 830 | 3.565307 | ACAAAGAAGGTGCTTGATCCAA | 58.435 | 40.909 | 0.00 | 0.00 | 0.00 | 3.53 |
779 | 831 | 3.149196 | GACAAAGAAGGTGCTTGATCCA | 58.851 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
780 | 832 | 2.489722 | GGACAAAGAAGGTGCTTGATCC | 59.510 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
781 | 833 | 3.149196 | TGGACAAAGAAGGTGCTTGATC | 58.851 | 45.455 | 0.00 | 0.00 | 0.00 | 2.92 |
782 | 834 | 3.152341 | CTGGACAAAGAAGGTGCTTGAT | 58.848 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
783 | 835 | 2.092429 | ACTGGACAAAGAAGGTGCTTGA | 60.092 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
784 | 836 | 2.301346 | ACTGGACAAAGAAGGTGCTTG | 58.699 | 47.619 | 0.00 | 0.00 | 0.00 | 4.01 |
785 | 837 | 2.736670 | ACTGGACAAAGAAGGTGCTT | 57.263 | 45.000 | 0.00 | 0.00 | 0.00 | 3.91 |
786 | 838 | 2.706190 | AGTACTGGACAAAGAAGGTGCT | 59.294 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
787 | 839 | 3.067833 | GAGTACTGGACAAAGAAGGTGC | 58.932 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
788 | 840 | 3.243771 | ACGAGTACTGGACAAAGAAGGTG | 60.244 | 47.826 | 12.28 | 0.00 | 0.00 | 4.00 |
789 | 841 | 2.963782 | ACGAGTACTGGACAAAGAAGGT | 59.036 | 45.455 | 12.28 | 0.00 | 0.00 | 3.50 |
790 | 842 | 3.662247 | ACGAGTACTGGACAAAGAAGG | 57.338 | 47.619 | 12.28 | 0.00 | 0.00 | 3.46 |
791 | 843 | 6.090898 | CCAAATACGAGTACTGGACAAAGAAG | 59.909 | 42.308 | 12.28 | 0.00 | 0.00 | 2.85 |
792 | 844 | 5.929992 | CCAAATACGAGTACTGGACAAAGAA | 59.070 | 40.000 | 12.28 | 0.00 | 0.00 | 2.52 |
793 | 845 | 5.475719 | CCAAATACGAGTACTGGACAAAGA | 58.524 | 41.667 | 12.28 | 0.00 | 0.00 | 2.52 |
796 | 848 | 3.833650 | TCCCAAATACGAGTACTGGACAA | 59.166 | 43.478 | 12.28 | 0.00 | 0.00 | 3.18 |
1452 | 1517 | 3.699894 | CAGCCGGTCCTGAGCAGT | 61.700 | 66.667 | 1.90 | 0.00 | 34.77 | 4.40 |
1558 | 1623 | 1.384191 | GCAACCCTGACCAATCCCT | 59.616 | 57.895 | 0.00 | 0.00 | 0.00 | 4.20 |
1573 | 1638 | 3.801129 | TGTGAAACAGACGCGCAA | 58.199 | 50.000 | 5.73 | 0.00 | 45.67 | 4.85 |
1662 | 1727 | 1.382009 | TAGCTCGGCCATGGTACCA | 60.382 | 57.895 | 18.99 | 18.99 | 0.00 | 3.25 |
1682 | 1747 | 0.742281 | CGCATAGGACAGCAGCTGTT | 60.742 | 55.000 | 28.84 | 16.67 | 45.44 | 3.16 |
1695 | 1760 | 2.240500 | GCCCGAGACAAGCGCATAG | 61.241 | 63.158 | 11.47 | 0.19 | 0.00 | 2.23 |
1724 | 1789 | 4.388499 | ACGTCCACATGGCCGGAC | 62.388 | 66.667 | 15.55 | 15.55 | 46.88 | 4.79 |
1726 | 1791 | 4.697756 | ACACGTCCACATGGCCGG | 62.698 | 66.667 | 6.29 | 0.00 | 41.45 | 6.13 |
1779 | 1844 | 2.708861 | TCCAAGAGTTTTACAGGCCTCA | 59.291 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
1797 | 1862 | 2.364632 | CCAGAACGCACCATATTTCCA | 58.635 | 47.619 | 0.00 | 0.00 | 0.00 | 3.53 |
1899 | 1964 | 1.605738 | GGATGCCATGGATCCCAGC | 60.606 | 63.158 | 18.40 | 10.01 | 36.75 | 4.85 |
1900 | 1965 | 1.303074 | CGGATGCCATGGATCCCAG | 60.303 | 63.158 | 25.39 | 15.33 | 36.75 | 4.45 |
2120 | 2185 | 6.499699 | AGCCACAAGATCATAAGAGATATCCA | 59.500 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
2202 | 2267 | 7.095060 | CCCAAACCAATCATATCGATGTAGAAG | 60.095 | 40.741 | 8.54 | 1.20 | 33.40 | 2.85 |
2655 | 2720 | 5.463392 | CACGTTGAATGAGGTACTATCCATG | 59.537 | 44.000 | 0.00 | 0.00 | 41.55 | 3.66 |
2697 | 2762 | 1.652124 | GAACTGATGCGCTGCAATTTG | 59.348 | 47.619 | 9.73 | 0.00 | 43.62 | 2.32 |
3004 | 3069 | 6.874288 | AAATGTTATAGCAAGGATCTCTGC | 57.126 | 37.500 | 10.48 | 10.48 | 0.00 | 4.26 |
3032 | 3097 | 0.537188 | TTTTTGTTGGGCGCTTCCAA | 59.463 | 45.000 | 13.35 | 13.35 | 43.82 | 3.53 |
3034 | 3099 | 1.877637 | AATTTTTGTTGGGCGCTTCC | 58.122 | 45.000 | 7.64 | 0.33 | 0.00 | 3.46 |
3138 | 3203 | 6.849697 | TGAGTAGAACCCAAGGTTATGGATAT | 59.150 | 38.462 | 3.94 | 0.00 | 46.95 | 1.63 |
3149 | 3214 | 3.529533 | CTGCATCTGAGTAGAACCCAAG | 58.470 | 50.000 | 0.00 | 0.00 | 36.32 | 3.61 |
3333 | 3398 | 8.092687 | GTGGAGAAACAACTAAAGTATACCTGA | 58.907 | 37.037 | 0.00 | 0.00 | 0.00 | 3.86 |
3418 | 3483 | 8.600625 | TGCATAGTTCAAACTTATGTAACGATC | 58.399 | 33.333 | 0.00 | 0.00 | 40.37 | 3.69 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.