Multiple sequence alignment - TraesCS1A01G195800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G195800 chr1A 100.000 2810 0 0 1 2810 353659357 353662166 0.000000e+00 5190
1 TraesCS1A01G195800 chr7A 85.979 2646 356 13 4 2642 170625276 170622639 0.000000e+00 2817
2 TraesCS1A01G195800 chr7A 93.103 116 8 0 2695 2810 396851277 396851162 1.340000e-38 171
3 TraesCS1A01G195800 chr7A 92.982 114 8 0 2697 2810 396979854 396979741 1.730000e-37 167
4 TraesCS1A01G195800 chr3A 73.025 1468 361 34 4 1456 149724509 149723062 4.210000e-133 484
5 TraesCS1A01G195800 chr3A 92.982 114 8 0 2697 2810 297848092 297847979 1.730000e-37 167
6 TraesCS1A01G195800 chr1D 72.816 1442 360 30 58 1485 456577751 456576328 1.970000e-126 462
7 TraesCS1A01G195800 chr1D 92.241 116 9 0 2695 2810 13013633 13013518 6.230000e-37 165
8 TraesCS1A01G195800 chr6B 78.146 604 128 3 3 604 288376025 288375424 5.680000e-102 381
9 TraesCS1A01G195800 chr6D 93.162 117 7 1 2695 2810 222762735 222762619 1.340000e-38 171
10 TraesCS1A01G195800 chr2D 93.103 116 8 0 2695 2810 288779392 288779507 1.340000e-38 171
11 TraesCS1A01G195800 chr2D 92.373 118 7 1 2695 2810 371987101 371987218 1.730000e-37 167
12 TraesCS1A01G195800 chr5D 92.241 116 9 0 2695 2810 228703650 228703535 6.230000e-37 165
13 TraesCS1A01G195800 chr4D 92.241 116 9 0 2695 2810 422021899 422021784 6.230000e-37 165


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G195800 chr1A 353659357 353662166 2809 False 5190 5190 100.000 1 2810 1 chr1A.!!$F1 2809
1 TraesCS1A01G195800 chr7A 170622639 170625276 2637 True 2817 2817 85.979 4 2642 1 chr7A.!!$R1 2638
2 TraesCS1A01G195800 chr3A 149723062 149724509 1447 True 484 484 73.025 4 1456 1 chr3A.!!$R1 1452
3 TraesCS1A01G195800 chr1D 456576328 456577751 1423 True 462 462 72.816 58 1485 1 chr1D.!!$R2 1427
4 TraesCS1A01G195800 chr6B 288375424 288376025 601 True 381 381 78.146 3 604 1 chr6B.!!$R1 601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
634 635 0.687354 TGAGCAAGTGTTCCCTCCTC 59.313 55.0 0.0 0.0 0.0 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2261 2263 0.03438 TCCTGGCGCTACTACTCACT 60.034 55.0 7.64 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.019174 AGGTGATTTCTAAATGCCTGGTG 58.981 43.478 0.00 0.00 32.52 4.17
56 57 0.748450 CCGGTTGCGACCTATCCTTA 59.252 55.000 21.11 0.00 44.20 2.69
67 68 6.663523 TGCGACCTATCCTTAATGAGATCATA 59.336 38.462 0.00 0.00 35.10 2.15
160 161 3.321396 TCCACAAGATTCAGCATTGCAAA 59.679 39.130 11.91 5.21 0.00 3.68
174 175 5.068723 AGCATTGCAAAAATGAGAGGGATAG 59.931 40.000 11.91 0.00 0.00 2.08
183 184 6.753913 AAATGAGAGGGATAGCTATTGTGA 57.246 37.500 7.87 0.00 0.00 3.58
227 228 3.580458 GGCATATGATAGAGTGGACTGGT 59.420 47.826 6.97 0.00 0.00 4.00
296 297 1.066071 CCAATTGGGTGATGCAATGCA 60.066 47.619 17.36 11.44 44.86 3.96
352 353 2.765699 AGAGCTCCTGGAGACTTTCATC 59.234 50.000 27.53 11.52 0.00 2.92
364 365 2.239654 GACTTTCATCCCCTCACATGGA 59.760 50.000 0.00 0.00 34.54 3.41
445 446 6.547880 TGGTGCACTTATTGAAAAAGGAACTA 59.452 34.615 17.98 0.00 38.49 2.24
451 452 6.713450 ACTTATTGAAAAAGGAACTAGCGGAA 59.287 34.615 0.00 0.00 38.49 4.30
469 470 4.082463 GCGGAAAACAATCTCAACCCAATA 60.082 41.667 0.00 0.00 0.00 1.90
472 473 7.096551 CGGAAAACAATCTCAACCCAATAAAT 58.903 34.615 0.00 0.00 0.00 1.40
488 489 7.561356 ACCCAATAAATATTGCTAGAAACAGCT 59.439 33.333 7.50 0.00 42.30 4.24
492 493 6.985188 AAATATTGCTAGAAACAGCTCGAA 57.015 33.333 0.00 0.00 42.30 3.71
493 494 7.559590 AAATATTGCTAGAAACAGCTCGAAT 57.440 32.000 0.00 0.00 42.30 3.34
499 500 5.300539 TGCTAGAAACAGCTCGAATATCTCT 59.699 40.000 0.00 0.00 42.30 3.10
547 548 1.398692 TTTTCTTCAAAGCGGTGCCT 58.601 45.000 0.00 0.00 0.00 4.75
560 561 1.606668 CGGTGCCTGAACAAGCTAAAA 59.393 47.619 0.00 0.00 0.00 1.52
562 563 3.578688 GGTGCCTGAACAAGCTAAAATG 58.421 45.455 0.00 0.00 0.00 2.32
563 564 3.578688 GTGCCTGAACAAGCTAAAATGG 58.421 45.455 0.00 0.00 0.00 3.16
571 572 7.042523 CCTGAACAAGCTAAAATGGTCAAAAAG 60.043 37.037 5.43 0.00 42.32 2.27
598 599 2.170397 TGAGACTTTCCAGAAGTGCACA 59.830 45.455 21.04 0.00 0.00 4.57
614 615 2.105821 TGCACAGGCCAGTTACTAAGTT 59.894 45.455 5.01 0.00 40.13 2.66
615 616 3.146847 GCACAGGCCAGTTACTAAGTTT 58.853 45.455 5.01 0.00 0.00 2.66
622 623 4.083271 GGCCAGTTACTAAGTTTGAGCAAG 60.083 45.833 0.00 0.00 0.00 4.01
634 635 0.687354 TGAGCAAGTGTTCCCTCCTC 59.313 55.000 0.00 0.00 0.00 3.71
646 647 2.977808 TCCCTCCTCTTCAGTGAAGTT 58.022 47.619 27.83 0.00 40.24 2.66
661 662 2.288458 TGAAGTTTGCCCTACGAAAACG 59.712 45.455 0.00 0.00 38.52 3.60
662 663 2.243602 AGTTTGCCCTACGAAAACGA 57.756 45.000 0.00 0.00 38.52 3.85
680 681 7.462200 CGAAAACGAGAGAGAGAGAATTAAAGC 60.462 40.741 0.00 0.00 0.00 3.51
690 691 4.371681 AGAGAATTAAAGCCACCCTAGGA 58.628 43.478 11.48 0.00 0.00 2.94
695 696 1.972588 AAAGCCACCCTAGGAGTGAT 58.027 50.000 24.15 13.70 37.42 3.06
696 697 1.501582 AAGCCACCCTAGGAGTGATC 58.498 55.000 24.15 17.11 37.42 2.92
698 699 1.008938 AGCCACCCTAGGAGTGATCTT 59.991 52.381 24.15 9.53 37.42 2.40
703 704 5.151454 CCACCCTAGGAGTGATCTTAGAAT 58.849 45.833 24.15 0.00 37.42 2.40
726 727 5.186198 TCTTTTGAGAGCAAATACCTAGGC 58.814 41.667 9.30 0.00 43.07 3.93
738 739 2.123425 CTAGGCCTGCCGACCCTA 60.123 66.667 17.99 0.00 41.95 3.53
758 759 5.151454 CCTAGAGGGTAGGATGAAAGATGT 58.849 45.833 0.00 0.00 36.85 3.06
825 826 3.007398 ACTGGTCAGAGAAGTTCATGTCC 59.993 47.826 5.50 10.72 0.00 4.02
828 829 4.249661 GGTCAGAGAAGTTCATGTCCTTC 58.750 47.826 15.05 15.05 37.85 3.46
830 831 3.574396 TCAGAGAAGTTCATGTCCTTCGT 59.426 43.478 16.15 8.99 41.51 3.85
852 853 1.610624 GCGAAGGAGGTCCATGTCAAA 60.611 52.381 0.00 0.00 38.89 2.69
862 863 7.054124 GGAGGTCCATGTCAAATCTATTGTAA 58.946 38.462 0.00 0.00 35.64 2.41
879 880 1.691976 GTAAAAGCCCTGCCAACCTTT 59.308 47.619 0.00 0.00 0.00 3.11
884 885 1.532604 GCCCTGCCAACCTTTACCAC 61.533 60.000 0.00 0.00 0.00 4.16
906 907 3.675502 CGAGTGTCTTCATGCTCTCACAT 60.676 47.826 11.29 0.00 0.00 3.21
947 948 6.849502 ACGAGAAAATGATACGTGAGTTCTA 58.150 36.000 0.00 0.00 46.40 2.10
959 960 3.306780 CGTGAGTTCTAGTGGGGTGAAAT 60.307 47.826 0.00 0.00 0.00 2.17
990 991 1.630878 AGGAAGGTTCACTGGATGTCC 59.369 52.381 0.00 0.00 0.00 4.02
996 997 1.065854 GTTCACTGGATGTCCTGGGAG 60.066 57.143 10.26 0.00 46.03 4.30
999 1000 2.284625 TGGATGTCCTGGGAGCGT 60.285 61.111 0.09 0.00 36.82 5.07
1006 1007 0.103208 GTCCTGGGAGCGTATGACAG 59.897 60.000 0.00 0.00 0.00 3.51
1008 1009 1.443407 CTGGGAGCGTATGACAGGG 59.557 63.158 0.00 0.00 0.00 4.45
1056 1057 7.428472 GGTTTTAGAGATATGCGCTTGTTTAAC 59.572 37.037 9.73 0.00 0.00 2.01
1123 1124 1.763968 TAGCCTATGTGCGAGAGTGT 58.236 50.000 0.00 0.00 36.02 3.55
1125 1126 1.002366 GCCTATGTGCGAGAGTGTTG 58.998 55.000 0.00 0.00 0.00 3.33
1134 1135 4.686091 TGTGCGAGAGTGTTGAAATCTAAG 59.314 41.667 0.00 0.00 0.00 2.18
1167 1168 1.226746 GAAACCTTCTGGACACGGTG 58.773 55.000 6.58 6.58 37.04 4.94
1175 1176 1.433053 CTGGACACGGTGTTTGCGAA 61.433 55.000 15.94 0.00 0.00 4.70
1215 1216 3.567585 GGAGAGCTATTGAATTTGGGCTC 59.432 47.826 0.00 0.00 44.21 4.70
1216 1217 4.202441 GAGAGCTATTGAATTTGGGCTCA 58.798 43.478 17.31 0.00 45.66 4.26
1234 1235 3.555966 CTCAAACTGTTGAAGAAGGGGT 58.444 45.455 0.00 0.00 43.18 4.95
1251 1252 1.450312 GTTGATCTGGCGAGTGGGG 60.450 63.158 0.00 0.00 0.00 4.96
1278 1279 5.539574 TGGAAAAAGCATCCAGATTCAAAGA 59.460 36.000 0.00 0.00 41.98 2.52
1297 1298 1.227973 GACCAATGGATCCCGAGGC 60.228 63.158 9.90 0.00 0.00 4.70
1325 1326 2.719739 CCTCATGACAGCAACCTTCAT 58.280 47.619 0.00 0.00 0.00 2.57
1350 1351 4.656112 AGGAAATCTCGTATCAGATGGGTT 59.344 41.667 0.00 0.00 33.13 4.11
1352 1353 6.015010 AGGAAATCTCGTATCAGATGGGTTAG 60.015 42.308 0.00 0.00 33.13 2.34
1359 1360 3.567478 ATCAGATGGGTTAGCCAACTC 57.433 47.619 10.27 3.15 35.53 3.01
1366 1367 1.614317 GGGTTAGCCAACTCATGCTGT 60.614 52.381 0.00 0.00 38.52 4.40
1386 1387 0.247736 CGGACAGAAAGGAGTGGGAG 59.752 60.000 0.00 0.00 0.00 4.30
1391 1392 1.834263 CAGAAAGGAGTGGGAGGTAGG 59.166 57.143 0.00 0.00 0.00 3.18
1456 1457 1.332997 GCAAGCTCAGAATTCCATCCG 59.667 52.381 0.65 0.00 0.00 4.18
1488 1489 0.748450 ACTGCATGGCATGGCATTAC 59.252 50.000 30.44 24.38 39.65 1.89
1520 1522 2.726241 GCGTTTTTCAGTCAAATCTGCC 59.274 45.455 0.00 0.00 35.63 4.85
1529 1531 3.373439 CAGTCAAATCTGCCTACAAGCTC 59.627 47.826 0.00 0.00 0.00 4.09
1533 1535 1.617018 ATCTGCCTACAAGCTCGCCA 61.617 55.000 0.00 0.00 0.00 5.69
1536 1538 1.671054 GCCTACAAGCTCGCCACAA 60.671 57.895 0.00 0.00 0.00 3.33
1538 1540 0.602638 CCTACAAGCTCGCCACAACA 60.603 55.000 0.00 0.00 0.00 3.33
1541 1543 1.237285 ACAAGCTCGCCACAACATCC 61.237 55.000 0.00 0.00 0.00 3.51
1542 1544 0.957395 CAAGCTCGCCACAACATCCT 60.957 55.000 0.00 0.00 0.00 3.24
1544 1546 1.078848 GCTCGCCACAACATCCTCT 60.079 57.895 0.00 0.00 0.00 3.69
1551 1553 1.349026 CCACAACATCCTCTGGTCAGT 59.651 52.381 0.00 0.00 0.00 3.41
1553 1555 3.070018 CACAACATCCTCTGGTCAGTTC 58.930 50.000 0.00 0.00 0.00 3.01
1557 1559 3.096092 ACATCCTCTGGTCAGTTCTCTC 58.904 50.000 0.00 0.00 0.00 3.20
1558 1560 2.980246 TCCTCTGGTCAGTTCTCTCA 57.020 50.000 0.00 0.00 0.00 3.27
1559 1561 3.244887 TCCTCTGGTCAGTTCTCTCAA 57.755 47.619 0.00 0.00 0.00 3.02
1560 1562 3.576861 TCCTCTGGTCAGTTCTCTCAAA 58.423 45.455 0.00 0.00 0.00 2.69
1562 1564 3.324993 CTCTGGTCAGTTCTCTCAAAGC 58.675 50.000 0.00 0.00 0.00 3.51
1575 1577 1.410517 CTCAAAGCCCATCGAGCTCTA 59.589 52.381 12.85 0.00 40.49 2.43
1580 1582 1.395826 GCCCATCGAGCTCTACCAGT 61.396 60.000 12.85 0.00 0.00 4.00
1583 1585 2.894126 CCCATCGAGCTCTACCAGTATT 59.106 50.000 12.85 0.00 0.00 1.89
1584 1586 3.057174 CCCATCGAGCTCTACCAGTATTC 60.057 52.174 12.85 0.00 0.00 1.75
1589 1591 4.113354 CGAGCTCTACCAGTATTCCAAAC 58.887 47.826 12.85 0.00 0.00 2.93
1605 1607 2.927429 CAAACGATCGCAACATTTGGA 58.073 42.857 16.60 0.00 0.00 3.53
1622 1624 6.013984 ACATTTGGAATCTCATTTGGAAAGCT 60.014 34.615 0.00 0.00 0.00 3.74
1634 1636 0.616891 GGAAAGCTAAGGTTCCCGGA 59.383 55.000 0.73 0.00 37.87 5.14
1640 1642 1.678123 GCTAAGGTTCCCGGAAAGGTC 60.678 57.143 0.73 0.00 38.74 3.85
1641 1643 1.907255 CTAAGGTTCCCGGAAAGGTCT 59.093 52.381 0.73 0.00 38.74 3.85
1664 1666 1.549203 TCTTTGCTTGGAGGATTGCC 58.451 50.000 0.00 0.00 0.00 4.52
1673 1675 1.692411 GGAGGATTGCCACCAATACC 58.308 55.000 0.00 0.00 42.26 2.73
1682 1684 0.251564 CCACCAATACCCTTGCCACA 60.252 55.000 0.00 0.00 0.00 4.17
1700 1702 4.797275 GCCACAAAGAAGAACAAATGGAGG 60.797 45.833 0.00 0.00 0.00 4.30
1713 1715 3.914426 AATGGAGGCGTACTCTTGAAT 57.086 42.857 8.74 0.00 45.83 2.57
1714 1716 3.914426 ATGGAGGCGTACTCTTGAATT 57.086 42.857 8.74 0.00 45.83 2.17
1718 1720 2.930682 GAGGCGTACTCTTGAATTGGAC 59.069 50.000 2.56 0.00 43.14 4.02
1721 1723 1.659098 CGTACTCTTGAATTGGACGCC 59.341 52.381 0.00 0.00 0.00 5.68
1727 1729 1.523154 TTGAATTGGACGCCACCTGC 61.523 55.000 0.00 0.00 30.78 4.85
1739 1741 1.838112 CCACCTGCAACATATGTGGT 58.162 50.000 9.63 9.42 41.20 4.16
1745 1747 3.266636 CTGCAACATATGTGGTAACGGA 58.733 45.455 9.63 0.00 42.51 4.69
1754 1756 1.192428 GTGGTAACGGAGTGGAGGAT 58.808 55.000 0.00 0.00 45.00 3.24
1772 1774 2.687935 GGATGAACACCATGCGGTTATT 59.312 45.455 0.84 0.00 46.31 1.40
1781 1783 2.618241 CCATGCGGTTATTATGTGCACT 59.382 45.455 19.41 6.22 38.54 4.40
1787 1789 4.809426 GCGGTTATTATGTGCACTAAGAGT 59.191 41.667 19.41 2.03 0.00 3.24
1790 1792 7.423199 CGGTTATTATGTGCACTAAGAGTAGA 58.577 38.462 19.41 0.00 0.00 2.59
1799 1801 4.398358 TGCACTAAGAGTAGAGCATTACGT 59.602 41.667 0.00 0.00 45.44 3.57
1800 1802 4.735822 GCACTAAGAGTAGAGCATTACGTG 59.264 45.833 0.00 0.00 41.89 4.49
1814 1816 5.281693 CATTACGTGCAACAATGAGAGAA 57.718 39.130 0.00 0.00 33.46 2.87
1816 1818 5.940192 TTACGTGCAACAATGAGAGAATT 57.060 34.783 0.00 0.00 35.74 2.17
1817 1819 4.836125 ACGTGCAACAATGAGAGAATTT 57.164 36.364 0.00 0.00 35.74 1.82
1831 1833 1.359130 AGAATTTTGGTCCCTCCCAGG 59.641 52.381 0.00 0.00 35.49 4.45
1850 1852 2.105993 AGGGGAGAACAAGTTGTGGTAC 59.894 50.000 9.79 0.15 0.00 3.34
1871 1873 1.922447 ACTGGGGATGATTGGCTACAA 59.078 47.619 0.00 0.00 41.59 2.41
1886 1888 1.349688 CTACAACTTGCCCTGGGTACA 59.650 52.381 15.56 1.17 0.00 2.90
1911 1913 1.016130 CGAGGAGATGCGCACAAAGT 61.016 55.000 14.90 0.00 0.00 2.66
1929 1931 1.777272 AGTTTTTGCTCCTCCTCTGGT 59.223 47.619 0.00 0.00 0.00 4.00
1936 1938 2.241479 CTCCTCCTCTGGTGCTGCTG 62.241 65.000 0.00 0.00 0.00 4.41
1956 1958 2.163390 CATCTGCGTGAGGACTGCG 61.163 63.158 0.00 0.00 0.00 5.18
1961 1963 2.865308 CGTGAGGACTGCGTACGA 59.135 61.111 21.65 3.19 36.94 3.43
1964 1966 1.731424 CGTGAGGACTGCGTACGAAAT 60.731 52.381 21.65 0.00 36.94 2.17
1979 1981 4.261578 ACGAAATAACGGGAGAGAAACA 57.738 40.909 0.00 0.00 37.61 2.83
1984 1986 6.037172 CGAAATAACGGGAGAGAAACAATCAT 59.963 38.462 0.00 0.00 0.00 2.45
1985 1987 7.223971 CGAAATAACGGGAGAGAAACAATCATA 59.776 37.037 0.00 0.00 0.00 2.15
1988 1990 4.192317 ACGGGAGAGAAACAATCATAAGC 58.808 43.478 0.00 0.00 0.00 3.09
1990 1992 5.128827 ACGGGAGAGAAACAATCATAAGCTA 59.871 40.000 0.00 0.00 0.00 3.32
1991 1993 6.183361 ACGGGAGAGAAACAATCATAAGCTAT 60.183 38.462 0.00 0.00 0.00 2.97
2018 2020 5.125100 TGTTTTTAAAGCAGCATGAGGAG 57.875 39.130 0.00 0.00 39.69 3.69
2043 2045 3.047280 GCATCGCGACAACACCCA 61.047 61.111 12.93 0.00 0.00 4.51
2050 2052 1.515521 GCGACAACACCCAAGGAAGG 61.516 60.000 0.00 0.00 0.00 3.46
2051 2053 0.107831 CGACAACACCCAAGGAAGGA 59.892 55.000 0.00 0.00 0.00 3.36
2053 2055 1.954382 GACAACACCCAAGGAAGGAAC 59.046 52.381 0.00 0.00 0.00 3.62
2055 2057 1.956477 CAACACCCAAGGAAGGAACAG 59.044 52.381 0.00 0.00 0.00 3.16
2056 2058 1.222567 ACACCCAAGGAAGGAACAGT 58.777 50.000 0.00 0.00 0.00 3.55
2060 2062 1.340114 CCCAAGGAAGGAACAGTAGGC 60.340 57.143 0.00 0.00 0.00 3.93
2061 2063 1.340114 CCAAGGAAGGAACAGTAGGCC 60.340 57.143 0.00 0.00 0.00 5.19
2062 2064 1.630878 CAAGGAAGGAACAGTAGGCCT 59.369 52.381 11.78 11.78 0.00 5.19
2063 2065 2.838202 CAAGGAAGGAACAGTAGGCCTA 59.162 50.000 8.91 8.91 0.00 3.93
2072 2074 3.406512 ACAGTAGGCCTAACCATCTCT 57.593 47.619 15.83 2.08 43.14 3.10
2075 2077 5.468658 ACAGTAGGCCTAACCATCTCTAAT 58.531 41.667 15.83 0.00 43.14 1.73
2077 2079 5.540337 CAGTAGGCCTAACCATCTCTAATCA 59.460 44.000 15.83 0.00 43.14 2.57
2080 2082 4.837860 AGGCCTAACCATCTCTAATCAGAG 59.162 45.833 1.29 0.00 45.10 3.35
2090 2092 3.868062 CTCTAATCAGAGGGGGAGGAAT 58.132 50.000 0.00 0.00 44.05 3.01
2104 2106 0.255890 AGGAATTACGTGCATGGGCT 59.744 50.000 11.36 0.00 41.91 5.19
2106 2108 1.378531 GAATTACGTGCATGGGCTCA 58.621 50.000 11.36 0.00 41.91 4.26
2108 2110 0.253044 ATTACGTGCATGGGCTCACT 59.747 50.000 11.36 0.00 41.91 3.41
2109 2111 0.036164 TTACGTGCATGGGCTCACTT 59.964 50.000 11.36 0.00 41.91 3.16
2136 2138 4.988598 ACAAGTGGTCGCCGCCTG 62.989 66.667 5.92 6.24 33.99 4.85
2162 2164 6.030849 TCGTGGATTGGCAAAAATTAATACG 58.969 36.000 3.01 7.30 0.00 3.06
2168 2170 3.190744 TGGCAAAAATTAATACGGACGCA 59.809 39.130 0.00 0.00 0.00 5.24
2169 2171 4.167268 GGCAAAAATTAATACGGACGCAA 58.833 39.130 0.00 0.00 0.00 4.85
2178 2180 1.504359 TACGGACGCAACTTTTCAGG 58.496 50.000 0.00 0.00 0.00 3.86
2186 2188 2.227388 CGCAACTTTTCAGGCAGATTCT 59.773 45.455 0.00 0.00 0.00 2.40
2192 2194 2.775911 TTCAGGCAGATTCTGGTGAG 57.224 50.000 15.28 0.00 33.36 3.51
2193 2195 1.942776 TCAGGCAGATTCTGGTGAGA 58.057 50.000 15.28 0.00 33.36 3.27
2198 2200 1.638133 CAGATTCTGGTGAGAGTGCG 58.362 55.000 5.73 0.00 0.00 5.34
2207 2209 1.906333 TGAGAGTGCGGCAGGTGTA 60.906 57.895 1.18 0.00 0.00 2.90
2213 2215 2.668212 GCGGCAGGTGTAGTTGCA 60.668 61.111 0.00 0.00 42.02 4.08
2221 2223 0.515564 GGTGTAGTTGCACGCGATTT 59.484 50.000 15.93 0.00 40.08 2.17
2223 2225 1.193650 GTGTAGTTGCACGCGATTTCA 59.806 47.619 15.93 1.15 0.00 2.69
2224 2226 1.459209 TGTAGTTGCACGCGATTTCAG 59.541 47.619 15.93 0.00 0.00 3.02
2229 2231 2.103042 GCACGCGATTTCAGAGGCT 61.103 57.895 15.93 0.00 0.00 4.58
2238 2240 3.126000 CGATTTCAGAGGCTTTGTCTTCC 59.874 47.826 4.83 0.00 0.00 3.46
2258 2260 0.039180 TGTCGGTCTCCAGGAAGCTA 59.961 55.000 0.00 0.00 0.00 3.32
2261 2263 0.970937 CGGTCTCCAGGAAGCTACCA 60.971 60.000 9.52 0.00 0.00 3.25
2264 2266 1.205893 GTCTCCAGGAAGCTACCAGTG 59.794 57.143 0.00 0.00 0.00 3.66
2269 2271 2.428890 CCAGGAAGCTACCAGTGAGTAG 59.571 54.545 12.09 12.09 42.25 2.57
2270 2272 3.093057 CAGGAAGCTACCAGTGAGTAGT 58.907 50.000 15.74 0.00 41.54 2.73
2275 2277 1.268640 GCTACCAGTGAGTAGTAGCGC 60.269 57.143 11.80 0.00 46.64 5.92
2276 2278 1.334243 CTACCAGTGAGTAGTAGCGCC 59.666 57.143 2.29 0.00 35.91 6.53
2308 2311 2.669569 CGTGAGGCACTTGTGGGG 60.670 66.667 2.81 0.00 41.55 4.96
2317 2320 1.462238 ACTTGTGGGGCTCCAGACT 60.462 57.895 4.86 0.00 45.05 3.24
2337 2340 3.830755 ACTATGGCCAGGTACTATAACGG 59.169 47.826 13.05 0.00 36.02 4.44
2338 2341 2.163810 TGGCCAGGTACTATAACGGT 57.836 50.000 0.00 0.00 36.02 4.83
2343 2346 2.035576 CCAGGTACTATAACGGTGAGGC 59.964 54.545 0.00 0.00 36.02 4.70
2346 2349 1.678101 GTACTATAACGGTGAGGCGGT 59.322 52.381 0.00 0.00 0.00 5.68
2348 2351 0.874607 CTATAACGGTGAGGCGGTGC 60.875 60.000 0.00 0.00 0.00 5.01
2362 2365 1.344763 GCGGTGCTAGAGGTGGATAAT 59.655 52.381 0.00 0.00 0.00 1.28
2365 2368 3.069586 CGGTGCTAGAGGTGGATAATCAA 59.930 47.826 0.00 0.00 0.00 2.57
2368 2371 5.297029 GGTGCTAGAGGTGGATAATCAAAAC 59.703 44.000 0.00 0.00 0.00 2.43
2376 2379 7.698163 AGGTGGATAATCAAAACCTCTCTAT 57.302 36.000 0.00 0.00 36.51 1.98
2387 2390 1.501170 ACCTCTCTATAGAGCTGGCCA 59.499 52.381 27.25 4.71 46.84 5.36
2389 2392 1.892474 CTCTCTATAGAGCTGGCCACC 59.108 57.143 22.81 0.00 42.79 4.61
2401 2404 3.070576 GCCACCCAGCATCCAACC 61.071 66.667 0.00 0.00 0.00 3.77
2407 2410 0.466922 CCCAGCATCCAACCAGATCC 60.467 60.000 0.00 0.00 0.00 3.36
2408 2411 0.549950 CCAGCATCCAACCAGATCCT 59.450 55.000 0.00 0.00 0.00 3.24
2411 2414 2.092538 CAGCATCCAACCAGATCCTCTT 60.093 50.000 0.00 0.00 0.00 2.85
2412 2415 2.092538 AGCATCCAACCAGATCCTCTTG 60.093 50.000 0.00 0.00 0.00 3.02
2413 2416 2.295885 CATCCAACCAGATCCTCTTGC 58.704 52.381 0.00 0.00 0.00 4.01
2415 2418 2.832838 TCCAACCAGATCCTCTTGCTA 58.167 47.619 0.00 0.00 0.00 3.49
2425 2428 1.696336 TCCTCTTGCTATGGGCTGATC 59.304 52.381 0.00 0.00 42.39 2.92
2434 2437 3.813240 GCTATGGGCTGATCATGGACATT 60.813 47.826 0.00 0.00 38.06 2.71
2440 2443 5.075493 GGGCTGATCATGGACATTAAAGAT 58.925 41.667 0.00 0.00 0.00 2.40
2448 2451 4.389890 TGGACATTAAAGATGCAATGGC 57.610 40.909 0.00 0.00 39.10 4.40
2456 2459 2.043652 ATGCAATGGCGGGCTTCT 60.044 55.556 2.38 0.00 45.35 2.85
2458 2461 2.439156 GCAATGGCGGGCTTCTCT 60.439 61.111 2.38 0.00 0.00 3.10
2461 2464 2.976490 AATGGCGGGCTTCTCTGCT 61.976 57.895 2.38 0.00 38.94 4.24
2463 2466 3.130160 GGCGGGCTTCTCTGCTTG 61.130 66.667 0.00 0.00 38.94 4.01
2467 2470 1.303155 GGGCTTCTCTGCTTGCAGT 60.303 57.895 20.20 0.00 0.00 4.40
2471 2474 1.069364 GCTTCTCTGCTTGCAGTGTTC 60.069 52.381 20.20 9.18 0.00 3.18
2479 2482 1.785041 CTTGCAGTGTTCGGTGGGTG 61.785 60.000 0.00 0.00 0.00 4.61
2496 2499 2.418976 GGGTGAACCGTAAGAAGAATGC 59.581 50.000 0.00 0.00 43.02 3.56
2503 2506 2.476185 CCGTAAGAAGAATGCTTTGGCG 60.476 50.000 0.00 0.00 34.26 5.69
2532 2535 1.905215 AGCTGCACTGAACAGGAGTAT 59.095 47.619 1.02 0.00 35.62 2.12
2562 2565 0.036952 CTGGTGATTGCAGACGTCCT 60.037 55.000 13.01 0.00 0.00 3.85
2575 2578 0.956633 ACGTCCTGCTGAGTTTACGA 59.043 50.000 0.00 0.00 34.62 3.43
2576 2579 1.544691 ACGTCCTGCTGAGTTTACGAT 59.455 47.619 0.00 0.00 34.62 3.73
2579 2582 1.480954 TCCTGCTGAGTTTACGATCCC 59.519 52.381 0.00 0.00 0.00 3.85
2593 2596 0.464373 GATCCCGGATGCTTGCTGAA 60.464 55.000 4.08 0.00 0.00 3.02
2610 2613 4.962362 TGCTGAATGTATTACTCCTCCTGA 59.038 41.667 0.00 0.00 0.00 3.86
2625 2628 7.941431 CTCCTCCTGAGTAGTTTTCTTACTA 57.059 40.000 0.00 0.00 36.27 1.82
2661 2664 6.739331 AAAATCCACAAACAACCCATAAGA 57.261 33.333 0.00 0.00 0.00 2.10
2662 2665 5.982890 AATCCACAAACAACCCATAAGAG 57.017 39.130 0.00 0.00 0.00 2.85
2663 2666 4.715534 TCCACAAACAACCCATAAGAGA 57.284 40.909 0.00 0.00 0.00 3.10
2664 2667 5.055265 TCCACAAACAACCCATAAGAGAA 57.945 39.130 0.00 0.00 0.00 2.87
2665 2668 5.450453 TCCACAAACAACCCATAAGAGAAA 58.550 37.500 0.00 0.00 0.00 2.52
2666 2669 5.300792 TCCACAAACAACCCATAAGAGAAAC 59.699 40.000 0.00 0.00 0.00 2.78
2667 2670 5.508994 CCACAAACAACCCATAAGAGAAACC 60.509 44.000 0.00 0.00 0.00 3.27
2668 2671 4.587262 ACAAACAACCCATAAGAGAAACCC 59.413 41.667 0.00 0.00 0.00 4.11
2669 2672 4.741928 AACAACCCATAAGAGAAACCCT 57.258 40.909 0.00 0.00 0.00 4.34
2670 2673 5.853572 AACAACCCATAAGAGAAACCCTA 57.146 39.130 0.00 0.00 0.00 3.53
2671 2674 5.437191 ACAACCCATAAGAGAAACCCTAG 57.563 43.478 0.00 0.00 0.00 3.02
2672 2675 4.227527 ACAACCCATAAGAGAAACCCTAGG 59.772 45.833 0.06 0.06 0.00 3.02
2673 2676 4.363546 ACCCATAAGAGAAACCCTAGGA 57.636 45.455 11.48 0.00 0.00 2.94
2674 2677 4.299485 ACCCATAAGAGAAACCCTAGGAG 58.701 47.826 11.48 2.69 0.00 3.69
2675 2678 3.071747 CCCATAAGAGAAACCCTAGGAGC 59.928 52.174 11.48 0.00 0.00 4.70
2676 2679 3.711704 CCATAAGAGAAACCCTAGGAGCA 59.288 47.826 11.48 0.00 0.00 4.26
2677 2680 4.349342 CCATAAGAGAAACCCTAGGAGCAT 59.651 45.833 11.48 0.00 0.00 3.79
2678 2681 5.512232 CCATAAGAGAAACCCTAGGAGCATC 60.512 48.000 11.48 3.03 0.00 3.91
2698 2701 9.686683 GAGCATCCTATAACCCATATTATTTGT 57.313 33.333 0.00 0.00 0.00 2.83
2772 2775 8.592105 ATGGTTATTTGTTTGATTGTTGTCTG 57.408 30.769 0.00 0.00 0.00 3.51
2773 2776 7.776107 TGGTTATTTGTTTGATTGTTGTCTGA 58.224 30.769 0.00 0.00 0.00 3.27
2774 2777 8.420222 TGGTTATTTGTTTGATTGTTGTCTGAT 58.580 29.630 0.00 0.00 0.00 2.90
2775 2778 9.260002 GGTTATTTGTTTGATTGTTGTCTGATT 57.740 29.630 0.00 0.00 0.00 2.57
2779 2782 8.945481 TTTGTTTGATTGTTGTCTGATTGATT 57.055 26.923 0.00 0.00 0.00 2.57
2780 2783 7.933728 TGTTTGATTGTTGTCTGATTGATTG 57.066 32.000 0.00 0.00 0.00 2.67
2781 2784 7.490840 TGTTTGATTGTTGTCTGATTGATTGT 58.509 30.769 0.00 0.00 0.00 2.71
2782 2785 7.435784 TGTTTGATTGTTGTCTGATTGATTGTG 59.564 33.333 0.00 0.00 0.00 3.33
2783 2786 6.638096 TGATTGTTGTCTGATTGATTGTGT 57.362 33.333 0.00 0.00 0.00 3.72
2784 2787 6.440436 TGATTGTTGTCTGATTGATTGTGTG 58.560 36.000 0.00 0.00 0.00 3.82
2785 2788 6.262720 TGATTGTTGTCTGATTGATTGTGTGA 59.737 34.615 0.00 0.00 0.00 3.58
2786 2789 6.448207 TTGTTGTCTGATTGATTGTGTGAA 57.552 33.333 0.00 0.00 0.00 3.18
2787 2790 6.448207 TGTTGTCTGATTGATTGTGTGAAA 57.552 33.333 0.00 0.00 0.00 2.69
2788 2791 7.041635 TGTTGTCTGATTGATTGTGTGAAAT 57.958 32.000 0.00 0.00 0.00 2.17
2789 2792 7.490840 TGTTGTCTGATTGATTGTGTGAAATT 58.509 30.769 0.00 0.00 0.00 1.82
2790 2793 7.435784 TGTTGTCTGATTGATTGTGTGAAATTG 59.564 33.333 0.00 0.00 0.00 2.32
2791 2794 7.274603 TGTCTGATTGATTGTGTGAAATTGA 57.725 32.000 0.00 0.00 0.00 2.57
2792 2795 7.364970 TGTCTGATTGATTGTGTGAAATTGAG 58.635 34.615 0.00 0.00 0.00 3.02
2793 2796 7.013559 TGTCTGATTGATTGTGTGAAATTGAGT 59.986 33.333 0.00 0.00 0.00 3.41
2794 2797 7.325338 GTCTGATTGATTGTGTGAAATTGAGTG 59.675 37.037 0.00 0.00 0.00 3.51
2795 2798 7.229106 TCTGATTGATTGTGTGAAATTGAGTGA 59.771 33.333 0.00 0.00 0.00 3.41
2796 2799 7.714703 TGATTGATTGTGTGAAATTGAGTGAA 58.285 30.769 0.00 0.00 0.00 3.18
2797 2800 8.196103 TGATTGATTGTGTGAAATTGAGTGAAA 58.804 29.630 0.00 0.00 0.00 2.69
2798 2801 9.199982 GATTGATTGTGTGAAATTGAGTGAAAT 57.800 29.630 0.00 0.00 0.00 2.17
2799 2802 8.945481 TTGATTGTGTGAAATTGAGTGAAATT 57.055 26.923 0.00 0.00 0.00 1.82
2800 2803 8.945481 TGATTGTGTGAAATTGAGTGAAATTT 57.055 26.923 0.00 0.00 41.34 1.82
2801 2804 8.819015 TGATTGTGTGAAATTGAGTGAAATTTG 58.181 29.630 0.00 0.00 39.31 2.32
2802 2805 8.945481 ATTGTGTGAAATTGAGTGAAATTTGA 57.055 26.923 0.00 0.00 39.31 2.69
2803 2806 8.768957 TTGTGTGAAATTGAGTGAAATTTGAA 57.231 26.923 0.00 0.00 39.31 2.69
2804 2807 8.768957 TGTGTGAAATTGAGTGAAATTTGAAA 57.231 26.923 0.00 0.00 39.31 2.69
2805 2808 8.655092 TGTGTGAAATTGAGTGAAATTTGAAAC 58.345 29.630 0.00 0.00 39.31 2.78
2806 2809 8.116136 GTGTGAAATTGAGTGAAATTTGAAACC 58.884 33.333 0.00 0.00 39.31 3.27
2807 2810 8.040132 TGTGAAATTGAGTGAAATTTGAAACCT 58.960 29.630 0.00 0.00 39.31 3.50
2808 2811 8.882736 GTGAAATTGAGTGAAATTTGAAACCTT 58.117 29.630 0.00 0.00 39.31 3.50
2809 2812 9.447157 TGAAATTGAGTGAAATTTGAAACCTTT 57.553 25.926 0.00 0.00 39.31 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.432444 CGGTTCACCAGGCATTTAGAA 58.568 47.619 0.00 0.00 35.14 2.10
22 23 0.402504 ACCGGTTCACCAGGCATTTA 59.597 50.000 0.00 0.00 34.50 1.40
56 57 4.631131 TGCGTTTCCGATATGATCTCATT 58.369 39.130 0.00 0.00 35.45 2.57
142 143 6.367695 TCTCATTTTTGCAATGCTGAATCTTG 59.632 34.615 6.82 0.00 0.00 3.02
148 149 3.056393 CCCTCTCATTTTTGCAATGCTGA 60.056 43.478 6.82 0.00 0.00 4.26
160 161 6.753913 TCACAATAGCTATCCCTCTCATTT 57.246 37.500 6.72 0.00 0.00 2.32
174 175 7.280876 TCAGATCCAACTTGTAATCACAATAGC 59.719 37.037 0.00 0.00 43.58 2.97
183 184 5.183904 GCCTTTGTCAGATCCAACTTGTAAT 59.816 40.000 0.00 0.00 0.00 1.89
199 200 5.698545 GTCCACTCTATCATATGCCTTTGTC 59.301 44.000 0.00 0.00 0.00 3.18
200 201 5.367937 AGTCCACTCTATCATATGCCTTTGT 59.632 40.000 0.00 0.00 0.00 2.83
227 228 2.118403 AGGACTCCCTCCAAGAAACA 57.882 50.000 0.00 0.00 42.46 2.83
296 297 7.482169 TCACTGAGTACCTCACTGATTTTAT 57.518 36.000 0.00 0.00 37.72 1.40
298 299 5.808366 TCACTGAGTACCTCACTGATTTT 57.192 39.130 0.00 0.00 37.72 1.82
352 353 0.535102 GCCGTAATCCATGTGAGGGG 60.535 60.000 0.00 0.00 0.00 4.79
364 365 0.623723 ATGGGTCACCTTGCCGTAAT 59.376 50.000 0.00 0.00 37.76 1.89
445 446 1.886542 GGGTTGAGATTGTTTTCCGCT 59.113 47.619 0.00 0.00 0.00 5.52
451 452 9.382275 GCAATATTTATTGGGTTGAGATTGTTT 57.618 29.630 11.26 0.00 42.46 2.83
469 470 6.985188 TTCGAGCTGTTTCTAGCAATATTT 57.015 33.333 0.00 0.00 46.07 1.40
472 473 7.661968 AGATATTCGAGCTGTTTCTAGCAATA 58.338 34.615 0.00 0.00 46.07 1.90
488 489 9.025041 TGCAAATAGGAGATTAGAGATATTCGA 57.975 33.333 0.00 0.00 0.00 3.71
547 548 6.760770 CCTTTTTGACCATTTTAGCTTGTTCA 59.239 34.615 0.00 0.00 0.00 3.18
560 561 3.319122 GTCTCAAGCACCTTTTTGACCAT 59.681 43.478 0.00 0.00 30.66 3.55
562 563 2.952310 AGTCTCAAGCACCTTTTTGACC 59.048 45.455 0.00 0.00 30.66 4.02
563 564 4.639135 AAGTCTCAAGCACCTTTTTGAC 57.361 40.909 0.00 0.00 30.66 3.18
571 572 2.550830 TCTGGAAAGTCTCAAGCACC 57.449 50.000 0.00 0.00 0.00 5.01
598 599 3.072476 TGCTCAAACTTAGTAACTGGCCT 59.928 43.478 3.32 0.00 0.00 5.19
614 615 1.072331 GAGGAGGGAACACTTGCTCAA 59.928 52.381 0.00 0.00 30.67 3.02
615 616 0.687354 GAGGAGGGAACACTTGCTCA 59.313 55.000 0.00 0.00 30.67 4.26
622 623 1.971357 TCACTGAAGAGGAGGGAACAC 59.029 52.381 0.00 0.00 0.00 3.32
634 635 2.480419 CGTAGGGCAAACTTCACTGAAG 59.520 50.000 16.01 16.01 44.37 3.02
646 647 1.614903 TCTCTCGTTTTCGTAGGGCAA 59.385 47.619 0.00 0.00 44.46 4.52
661 662 5.356426 GGTGGCTTTAATTCTCTCTCTCTC 58.644 45.833 0.00 0.00 0.00 3.20
662 663 4.163268 GGGTGGCTTTAATTCTCTCTCTCT 59.837 45.833 0.00 0.00 0.00 3.10
680 681 4.186077 TCTAAGATCACTCCTAGGGTGG 57.814 50.000 22.65 11.50 35.61 4.61
690 691 7.619050 TGCTCTCAAAAGATTCTAAGATCACT 58.381 34.615 0.00 0.00 0.00 3.41
695 696 9.167311 GGTATTTGCTCTCAAAAGATTCTAAGA 57.833 33.333 0.00 0.00 44.44 2.10
696 697 9.171877 AGGTATTTGCTCTCAAAAGATTCTAAG 57.828 33.333 0.00 0.00 44.44 2.18
698 699 9.823647 CTAGGTATTTGCTCTCAAAAGATTCTA 57.176 33.333 0.00 0.00 44.44 2.10
703 704 5.186198 GCCTAGGTATTTGCTCTCAAAAGA 58.814 41.667 11.31 0.00 44.44 2.52
737 738 6.679542 TGTACATCTTTCATCCTACCCTCTA 58.320 40.000 0.00 0.00 0.00 2.43
738 739 5.529289 TGTACATCTTTCATCCTACCCTCT 58.471 41.667 0.00 0.00 0.00 3.69
744 745 7.556275 GGTTGGAATTGTACATCTTTCATCCTA 59.444 37.037 14.40 4.27 0.00 2.94
753 754 6.097270 CCATGATTGGTTGGAATTGTACATCT 59.903 38.462 0.00 0.00 38.30 2.90
828 829 1.079127 ATGGACCTCCTTCGCAACG 60.079 57.895 0.00 0.00 36.82 4.10
830 831 0.036388 GACATGGACCTCCTTCGCAA 60.036 55.000 0.00 0.00 36.82 4.85
852 853 4.249638 TGGCAGGGCTTTTACAATAGAT 57.750 40.909 0.00 0.00 0.00 1.98
862 863 1.338107 GTAAAGGTTGGCAGGGCTTT 58.662 50.000 0.00 0.00 0.00 3.51
879 880 1.893137 AGCATGAAGACACTCGTGGTA 59.107 47.619 0.00 0.00 40.40 3.25
884 885 2.257894 GTGAGAGCATGAAGACACTCG 58.742 52.381 0.00 0.00 34.31 4.18
906 907 7.789273 TTTCTCGTACTTATCACAAAAACCA 57.211 32.000 0.00 0.00 0.00 3.67
947 948 1.596496 CCCCTCTATTTCACCCCACT 58.404 55.000 0.00 0.00 0.00 4.00
959 960 1.633945 GAACCTTCCTTTGCCCCTCTA 59.366 52.381 0.00 0.00 0.00 2.43
990 991 1.443407 CCCTGTCATACGCTCCCAG 59.557 63.158 0.00 0.00 0.00 4.45
996 997 0.392461 TCTTTGGCCCTGTCATACGC 60.392 55.000 0.00 0.00 0.00 4.42
999 1000 1.210478 GCTCTCTTTGGCCCTGTCATA 59.790 52.381 0.00 0.00 0.00 2.15
1006 1007 4.035102 ACCCGCTCTCTTTGGCCC 62.035 66.667 0.00 0.00 0.00 5.80
1008 1009 2.180159 TACCACCCGCTCTCTTTGGC 62.180 60.000 0.00 0.00 0.00 4.52
1065 1066 2.103094 CCTCCATCCATGTTTAGCGAGA 59.897 50.000 0.00 0.00 0.00 4.04
1123 1124 7.124599 TCCGTTGGGATAGTACTTAGATTTCAA 59.875 37.037 0.00 0.00 37.43 2.69
1125 1126 7.047460 TCCGTTGGGATAGTACTTAGATTTC 57.953 40.000 0.00 0.00 37.43 2.17
1134 1135 3.900966 AGGTTTCCGTTGGGATAGTAC 57.099 47.619 0.00 0.00 43.41 2.73
1167 1168 0.101219 GGGATGCATCCTTCGCAAAC 59.899 55.000 37.94 19.62 46.35 2.93
1175 1176 1.076777 CAAACCGGGGATGCATCCT 60.077 57.895 37.94 20.76 46.35 3.24
1215 1216 3.699038 TCAACCCCTTCTTCAACAGTTTG 59.301 43.478 0.00 0.00 0.00 2.93
1216 1217 3.976015 TCAACCCCTTCTTCAACAGTTT 58.024 40.909 0.00 0.00 0.00 2.66
1234 1235 2.669133 CCCCCACTCGCCAGATCAA 61.669 63.158 0.00 0.00 0.00 2.57
1278 1279 1.700042 GCCTCGGGATCCATTGGTCT 61.700 60.000 15.23 0.00 0.00 3.85
1297 1298 1.153289 CTGTCATGAGGCCTTCCCG 60.153 63.158 6.77 0.00 39.21 5.14
1325 1326 4.281941 CCCATCTGATACGAGATTTCCTGA 59.718 45.833 0.00 0.00 29.72 3.86
1331 1332 4.021016 GGCTAACCCATCTGATACGAGATT 60.021 45.833 0.00 0.00 29.72 2.40
1350 1351 0.108186 CCGACAGCATGAGTTGGCTA 60.108 55.000 10.91 0.00 39.69 3.93
1352 1353 1.375908 TCCGACAGCATGAGTTGGC 60.376 57.895 16.38 4.54 39.69 4.52
1359 1360 1.081892 CCTTTCTGTCCGACAGCATG 58.918 55.000 21.75 13.83 45.54 4.06
1366 1367 0.178944 TCCCACTCCTTTCTGTCCGA 60.179 55.000 0.00 0.00 0.00 4.55
1386 1387 6.655425 GGAATATTTGCCTAATGAGACCTACC 59.345 42.308 0.00 0.00 0.00 3.18
1391 1392 6.547510 AGGTTGGAATATTTGCCTAATGAGAC 59.452 38.462 0.00 0.00 0.00 3.36
1467 1468 2.011741 AATGCCATGCCATGCAGTCG 62.012 55.000 0.00 0.00 43.65 4.18
1476 1477 3.502191 TTTTTCTCGTAATGCCATGCC 57.498 42.857 0.00 0.00 0.00 4.40
1513 1515 0.462759 GGCGAGCTTGTAGGCAGATT 60.463 55.000 2.14 0.00 34.17 2.40
1514 1516 1.144936 GGCGAGCTTGTAGGCAGAT 59.855 57.895 2.14 0.00 34.17 2.90
1520 1522 1.394917 GATGTTGTGGCGAGCTTGTAG 59.605 52.381 2.14 0.00 0.00 2.74
1529 1531 1.003355 ACCAGAGGATGTTGTGGCG 60.003 57.895 0.00 0.00 34.98 5.69
1533 1535 2.975489 AGAACTGACCAGAGGATGTTGT 59.025 45.455 3.76 0.00 0.00 3.32
1536 1538 3.096092 GAGAGAACTGACCAGAGGATGT 58.904 50.000 3.76 0.00 0.00 3.06
1538 1540 3.464720 TGAGAGAACTGACCAGAGGAT 57.535 47.619 3.76 0.00 0.00 3.24
1541 1543 3.324993 GCTTTGAGAGAACTGACCAGAG 58.675 50.000 3.76 0.00 0.00 3.35
1542 1544 2.037772 GGCTTTGAGAGAACTGACCAGA 59.962 50.000 3.76 0.00 0.00 3.86
1544 1546 1.072331 GGGCTTTGAGAGAACTGACCA 59.928 52.381 0.00 0.00 0.00 4.02
1551 1553 1.406069 GCTCGATGGGCTTTGAGAGAA 60.406 52.381 8.76 0.00 29.82 2.87
1553 1555 0.177604 AGCTCGATGGGCTTTGAGAG 59.822 55.000 8.76 2.45 36.56 3.20
1557 1559 1.576356 GTAGAGCTCGATGGGCTTTG 58.424 55.000 8.37 0.00 40.40 2.77
1558 1560 0.466124 GGTAGAGCTCGATGGGCTTT 59.534 55.000 8.37 0.00 40.40 3.51
1559 1561 0.687757 TGGTAGAGCTCGATGGGCTT 60.688 55.000 8.37 0.00 40.40 4.35
1560 1562 1.075970 TGGTAGAGCTCGATGGGCT 60.076 57.895 8.37 0.00 43.26 5.19
1562 1564 1.982660 TACTGGTAGAGCTCGATGGG 58.017 55.000 8.37 2.91 0.00 4.00
1575 1577 2.277084 GCGATCGTTTGGAATACTGGT 58.723 47.619 17.81 0.00 0.00 4.00
1580 1582 4.955925 AATGTTGCGATCGTTTGGAATA 57.044 36.364 17.81 1.51 0.00 1.75
1583 1585 2.927429 CAAATGTTGCGATCGTTTGGA 58.073 42.857 17.81 0.00 37.82 3.53
1589 1591 3.063861 TGAGATTCCAAATGTTGCGATCG 59.936 43.478 11.69 11.69 0.00 3.69
1605 1607 6.153510 GGAACCTTAGCTTTCCAAATGAGATT 59.846 38.462 9.60 0.00 41.01 2.40
1634 1636 4.985538 TCCAAGCAAAGATACAGACCTTT 58.014 39.130 0.00 0.00 33.29 3.11
1640 1642 4.201990 GCAATCCTCCAAGCAAAGATACAG 60.202 45.833 0.00 0.00 0.00 2.74
1641 1643 3.696051 GCAATCCTCCAAGCAAAGATACA 59.304 43.478 0.00 0.00 0.00 2.29
1664 1666 1.626686 TTGTGGCAAGGGTATTGGTG 58.373 50.000 0.00 0.00 0.00 4.17
1673 1675 3.799281 TTGTTCTTCTTTGTGGCAAGG 57.201 42.857 0.00 0.00 0.00 3.61
1682 1684 3.222603 ACGCCTCCATTTGTTCTTCTTT 58.777 40.909 0.00 0.00 0.00 2.52
1700 1702 1.060698 GCGTCCAATTCAAGAGTACGC 59.939 52.381 0.00 0.00 45.81 4.42
1721 1723 3.181511 CGTTACCACATATGTTGCAGGTG 60.182 47.826 20.47 5.54 37.54 4.00
1727 1729 3.621268 CCACTCCGTTACCACATATGTTG 59.379 47.826 5.37 5.39 0.00 3.33
1739 1741 2.232941 GTGTTCATCCTCCACTCCGTTA 59.767 50.000 0.00 0.00 0.00 3.18
1745 1747 1.340405 GCATGGTGTTCATCCTCCACT 60.340 52.381 0.00 0.00 32.92 4.00
1796 1798 4.836125 AAATTCTCTCATTGTTGCACGT 57.164 36.364 0.00 0.00 0.00 4.49
1799 1801 5.509501 GGACCAAAATTCTCTCATTGTTGCA 60.510 40.000 0.00 0.00 0.00 4.08
1800 1802 4.925646 GGACCAAAATTCTCTCATTGTTGC 59.074 41.667 0.00 0.00 0.00 4.17
1803 1805 5.003096 AGGGACCAAAATTCTCTCATTGT 57.997 39.130 0.00 0.00 0.00 2.71
1805 1807 4.570719 GGGAGGGACCAAAATTCTCTCATT 60.571 45.833 1.84 0.00 41.76 2.57
1831 1833 2.876550 GTGTACCACAACTTGTTCTCCC 59.123 50.000 0.00 0.00 34.08 4.30
1842 1844 1.735926 TCATCCCCAGTGTACCACAA 58.264 50.000 0.00 0.00 36.74 3.33
1850 1852 1.212688 TGTAGCCAATCATCCCCAGTG 59.787 52.381 0.00 0.00 0.00 3.66
1856 1858 3.427161 GCAAGTTGTAGCCAATCATCC 57.573 47.619 4.48 0.00 32.11 3.51
1871 1873 1.145571 TTTCTGTACCCAGGGCAAGT 58.854 50.000 4.91 0.00 39.31 3.16
1877 1879 1.621814 TCCTCGTTTTCTGTACCCAGG 59.378 52.381 0.00 0.00 39.31 4.45
1886 1888 0.037326 TGCGCATCTCCTCGTTTTCT 60.037 50.000 5.66 0.00 0.00 2.52
1888 1890 0.602638 TGTGCGCATCTCCTCGTTTT 60.603 50.000 15.91 0.00 0.00 2.43
1890 1892 0.602638 TTTGTGCGCATCTCCTCGTT 60.603 50.000 15.91 0.00 0.00 3.85
1892 1894 1.016130 ACTTTGTGCGCATCTCCTCG 61.016 55.000 15.91 1.16 0.00 4.63
1911 1913 1.819305 GCACCAGAGGAGGAGCAAAAA 60.819 52.381 0.00 0.00 43.62 1.94
1936 1938 1.812922 CAGTCCTCACGCAGATGCC 60.813 63.158 0.00 0.00 37.91 4.40
1945 1947 1.992170 ATTTCGTACGCAGTCCTCAC 58.008 50.000 11.24 0.00 43.93 3.51
1946 1948 3.504863 GTTATTTCGTACGCAGTCCTCA 58.495 45.455 11.24 0.00 43.93 3.86
1956 1958 5.163513 TGTTTCTCTCCCGTTATTTCGTAC 58.836 41.667 0.00 0.00 0.00 3.67
1961 1963 8.801882 TTATGATTGTTTCTCTCCCGTTATTT 57.198 30.769 0.00 0.00 0.00 1.40
1964 1966 5.815740 GCTTATGATTGTTTCTCTCCCGTTA 59.184 40.000 0.00 0.00 0.00 3.18
1997 1999 4.218417 TCCTCCTCATGCTGCTTTAAAAAC 59.782 41.667 0.00 0.00 0.00 2.43
2000 2002 3.347216 GTCCTCCTCATGCTGCTTTAAA 58.653 45.455 0.00 0.00 0.00 1.52
2006 2008 1.153208 CAGGTCCTCCTCATGCTGC 60.153 63.158 0.00 0.00 43.07 5.25
2009 2011 2.202987 CGCAGGTCCTCCTCATGC 60.203 66.667 0.00 0.00 43.07 4.06
2010 2012 2.202987 GCGCAGGTCCTCCTCATG 60.203 66.667 0.30 0.00 43.07 3.07
2027 2029 1.497278 CTTGGGTGTTGTCGCGATG 59.503 57.895 14.06 0.00 0.00 3.84
2029 2031 2.280524 CCTTGGGTGTTGTCGCGA 60.281 61.111 3.71 3.71 0.00 5.87
2033 2035 1.954382 GTTCCTTCCTTGGGTGTTGTC 59.046 52.381 0.00 0.00 0.00 3.18
2034 2036 1.286553 TGTTCCTTCCTTGGGTGTTGT 59.713 47.619 0.00 0.00 0.00 3.32
2035 2037 1.956477 CTGTTCCTTCCTTGGGTGTTG 59.044 52.381 0.00 0.00 0.00 3.33
2037 2039 1.222567 ACTGTTCCTTCCTTGGGTGT 58.777 50.000 0.00 0.00 0.00 4.16
2039 2041 1.985895 CCTACTGTTCCTTCCTTGGGT 59.014 52.381 0.00 0.00 0.00 4.51
2042 2044 1.630878 AGGCCTACTGTTCCTTCCTTG 59.369 52.381 1.29 0.00 0.00 3.61
2043 2045 2.046280 AGGCCTACTGTTCCTTCCTT 57.954 50.000 1.29 0.00 0.00 3.36
2050 2052 3.707102 AGAGATGGTTAGGCCTACTGTTC 59.293 47.826 13.46 7.86 38.35 3.18
2051 2053 3.725634 AGAGATGGTTAGGCCTACTGTT 58.274 45.455 13.46 0.00 38.35 3.16
2053 2055 5.540337 TGATTAGAGATGGTTAGGCCTACTG 59.460 44.000 13.46 0.00 38.35 2.74
2055 2057 5.775701 TCTGATTAGAGATGGTTAGGCCTAC 59.224 44.000 13.46 7.89 38.35 3.18
2056 2058 5.965486 TCTGATTAGAGATGGTTAGGCCTA 58.035 41.667 8.91 8.91 38.35 3.93
2072 2074 3.901844 CGTAATTCCTCCCCCTCTGATTA 59.098 47.826 0.00 0.00 0.00 1.75
2075 2077 1.007963 ACGTAATTCCTCCCCCTCTGA 59.992 52.381 0.00 0.00 0.00 3.27
2077 2079 1.497161 CACGTAATTCCTCCCCCTCT 58.503 55.000 0.00 0.00 0.00 3.69
2080 2082 0.182775 ATGCACGTAATTCCTCCCCC 59.817 55.000 0.00 0.00 0.00 5.40
2088 2090 1.094785 GTGAGCCCATGCACGTAATT 58.905 50.000 0.00 0.00 41.13 1.40
2090 2092 0.036164 AAGTGAGCCCATGCACGTAA 59.964 50.000 0.00 0.00 41.13 3.18
2104 2106 3.496692 CCACTTGTCATCTTGGGAAGTGA 60.497 47.826 10.91 0.00 44.08 3.41
2106 2108 2.443255 ACCACTTGTCATCTTGGGAAGT 59.557 45.455 0.00 0.00 33.00 3.01
2108 2110 2.549992 CGACCACTTGTCATCTTGGGAA 60.550 50.000 0.00 0.00 44.71 3.97
2109 2111 1.001974 CGACCACTTGTCATCTTGGGA 59.998 52.381 0.00 0.00 44.71 4.37
2117 2119 4.980805 GGCGGCGACCACTTGTCA 62.981 66.667 12.98 0.00 44.71 3.58
2132 2134 3.512516 GCCAATCCACGAGCAGGC 61.513 66.667 0.00 0.00 34.71 4.85
2136 2138 2.368655 ATTTTTGCCAATCCACGAGC 57.631 45.000 0.00 0.00 0.00 5.03
2141 2143 6.334202 GTCCGTATTAATTTTTGCCAATCCA 58.666 36.000 0.00 0.00 0.00 3.41
2145 2147 4.167268 GCGTCCGTATTAATTTTTGCCAA 58.833 39.130 0.00 0.00 0.00 4.52
2162 2164 0.040067 CTGCCTGAAAAGTTGCGTCC 60.040 55.000 0.00 0.00 0.00 4.79
2168 2170 3.571401 CACCAGAATCTGCCTGAAAAGTT 59.429 43.478 4.40 0.00 33.65 2.66
2169 2171 3.152341 CACCAGAATCTGCCTGAAAAGT 58.848 45.455 4.40 0.00 33.65 2.66
2178 2180 1.367659 GCACTCTCACCAGAATCTGC 58.632 55.000 4.40 0.00 0.00 4.26
2186 2188 4.007644 CCTGCCGCACTCTCACCA 62.008 66.667 0.00 0.00 0.00 4.17
2192 2194 1.004918 AACTACACCTGCCGCACTC 60.005 57.895 0.00 0.00 0.00 3.51
2193 2195 1.301716 CAACTACACCTGCCGCACT 60.302 57.895 0.00 0.00 0.00 4.40
2198 2200 2.966309 GCGTGCAACTACACCTGCC 61.966 63.158 0.00 0.00 37.79 4.85
2207 2209 0.792640 CTCTGAAATCGCGTGCAACT 59.207 50.000 5.77 0.00 31.75 3.16
2213 2215 0.798776 CAAAGCCTCTGAAATCGCGT 59.201 50.000 5.77 0.00 0.00 6.01
2221 2223 2.037772 GACAGGAAGACAAAGCCTCTGA 59.962 50.000 0.00 0.00 0.00 3.27
2223 2225 1.001406 CGACAGGAAGACAAAGCCTCT 59.999 52.381 0.00 0.00 0.00 3.69
2224 2226 1.433534 CGACAGGAAGACAAAGCCTC 58.566 55.000 0.00 0.00 0.00 4.70
2229 2231 1.343465 GGAGACCGACAGGAAGACAAA 59.657 52.381 0.00 0.00 41.02 2.83
2238 2240 1.216710 GCTTCCTGGAGACCGACAG 59.783 63.158 0.00 0.00 34.54 3.51
2258 2260 0.611062 TGGCGCTACTACTCACTGGT 60.611 55.000 7.64 0.00 0.00 4.00
2261 2263 0.034380 TCCTGGCGCTACTACTCACT 60.034 55.000 7.64 0.00 0.00 3.41
2264 2266 2.034607 CCTCCTGGCGCTACTACTC 58.965 63.158 7.64 0.00 0.00 2.59
2290 2293 2.669569 CCCACAAGTGCCTCACGG 60.670 66.667 0.00 0.00 39.64 4.94
2295 2298 3.971702 GGAGCCCCACAAGTGCCT 61.972 66.667 0.00 0.00 0.00 4.75
2300 2303 1.134280 CATAGTCTGGAGCCCCACAAG 60.134 57.143 0.00 0.00 37.58 3.16
2302 2305 2.607811 CATAGTCTGGAGCCCCACA 58.392 57.895 0.00 0.00 37.58 4.17
2317 2320 3.575256 CACCGTTATAGTACCTGGCCATA 59.425 47.826 5.51 0.00 0.00 2.74
2337 2340 2.352032 ACCTCTAGCACCGCCTCAC 61.352 63.158 0.00 0.00 0.00 3.51
2338 2341 2.037367 ACCTCTAGCACCGCCTCA 59.963 61.111 0.00 0.00 0.00 3.86
2343 2346 2.628178 TGATTATCCACCTCTAGCACCG 59.372 50.000 0.00 0.00 0.00 4.94
2346 2349 5.191722 AGGTTTTGATTATCCACCTCTAGCA 59.808 40.000 2.96 0.00 31.92 3.49
2371 2374 0.972883 GGGTGGCCAGCTCTATAGAG 59.027 60.000 32.43 23.20 44.75 2.43
2372 2375 0.264657 TGGGTGGCCAGCTCTATAGA 59.735 55.000 32.43 1.69 0.00 1.98
2375 2378 3.652687 CTGGGTGGCCAGCTCTAT 58.347 61.111 32.43 0.00 0.00 1.98
2387 2390 0.257039 GATCTGGTTGGATGCTGGGT 59.743 55.000 0.00 0.00 0.00 4.51
2389 2392 0.549950 AGGATCTGGTTGGATGCTGG 59.450 55.000 0.00 0.00 41.60 4.85
2401 2404 1.698532 AGCCCATAGCAAGAGGATCTG 59.301 52.381 0.00 0.00 46.06 2.90
2412 2415 1.072806 TGTCCATGATCAGCCCATAGC 59.927 52.381 0.09 0.00 44.25 2.97
2413 2416 3.715638 ATGTCCATGATCAGCCCATAG 57.284 47.619 0.09 0.00 0.00 2.23
2415 2418 4.458256 TTAATGTCCATGATCAGCCCAT 57.542 40.909 0.09 0.00 0.00 4.00
2425 2428 4.748102 GCCATTGCATCTTTAATGTCCATG 59.252 41.667 0.00 0.00 37.47 3.66
2434 2437 0.395586 AGCCCGCCATTGCATCTTTA 60.396 50.000 0.00 0.00 37.32 1.85
2440 2443 2.751436 GAGAAGCCCGCCATTGCA 60.751 61.111 0.00 0.00 37.32 4.08
2448 2451 2.359107 TGCAAGCAGAGAAGCCCG 60.359 61.111 0.00 0.00 34.23 6.13
2456 2459 1.146041 ACCGAACACTGCAAGCAGA 59.854 52.632 27.17 0.00 46.30 4.26
2458 2461 2.186160 CCACCGAACACTGCAAGCA 61.186 57.895 0.00 0.00 37.60 3.91
2461 2464 1.821759 CACCCACCGAACACTGCAA 60.822 57.895 0.00 0.00 0.00 4.08
2463 2466 1.525077 TTCACCCACCGAACACTGC 60.525 57.895 0.00 0.00 0.00 4.40
2479 2482 4.723248 CCAAAGCATTCTTCTTACGGTTC 58.277 43.478 0.00 0.00 0.00 3.62
2485 2488 2.158559 TGCGCCAAAGCATTCTTCTTA 58.841 42.857 4.18 0.00 42.92 2.10
2496 2499 1.094073 AGCTAGCTCATGCGCCAAAG 61.094 55.000 12.68 0.00 45.42 2.77
2503 2506 0.461516 TCAGTGCAGCTAGCTCATGC 60.462 55.000 16.15 17.23 45.94 4.06
2509 2512 0.036952 TCCTGTTCAGTGCAGCTAGC 60.037 55.000 6.62 6.62 45.96 3.42
2532 2535 2.557924 GCAATCACCAGTTGATCACCAA 59.442 45.455 0.00 0.00 44.86 3.67
2562 2565 0.174845 CCGGGATCGTAAACTCAGCA 59.825 55.000 0.00 0.00 33.95 4.41
2564 2567 2.743938 CATCCGGGATCGTAAACTCAG 58.256 52.381 6.55 0.00 33.95 3.35
2566 2569 1.068741 AGCATCCGGGATCGTAAACTC 59.931 52.381 6.55 0.00 33.95 3.01
2575 2578 0.184451 ATTCAGCAAGCATCCGGGAT 59.816 50.000 2.97 2.97 0.00 3.85
2576 2579 0.749091 CATTCAGCAAGCATCCGGGA 60.749 55.000 0.00 0.00 0.00 5.14
2579 2582 3.976793 AATACATTCAGCAAGCATCCG 57.023 42.857 0.00 0.00 0.00 4.18
2642 2645 4.715534 TCTCTTATGGGTTGTTTGTGGA 57.284 40.909 0.00 0.00 0.00 4.02
2643 2646 5.508994 GGTTTCTCTTATGGGTTGTTTGTGG 60.509 44.000 0.00 0.00 0.00 4.17
2644 2647 5.508994 GGGTTTCTCTTATGGGTTGTTTGTG 60.509 44.000 0.00 0.00 0.00 3.33
2645 2648 4.587262 GGGTTTCTCTTATGGGTTGTTTGT 59.413 41.667 0.00 0.00 0.00 2.83
2646 2649 4.832823 AGGGTTTCTCTTATGGGTTGTTTG 59.167 41.667 0.00 0.00 0.00 2.93
2647 2650 5.074746 AGGGTTTCTCTTATGGGTTGTTT 57.925 39.130 0.00 0.00 0.00 2.83
2648 2651 4.741928 AGGGTTTCTCTTATGGGTTGTT 57.258 40.909 0.00 0.00 0.00 2.83
2649 2652 4.227527 CCTAGGGTTTCTCTTATGGGTTGT 59.772 45.833 0.00 0.00 0.00 3.32
2650 2653 4.473559 TCCTAGGGTTTCTCTTATGGGTTG 59.526 45.833 9.46 0.00 0.00 3.77
2651 2654 4.706616 TCCTAGGGTTTCTCTTATGGGTT 58.293 43.478 9.46 0.00 0.00 4.11
2652 2655 4.299485 CTCCTAGGGTTTCTCTTATGGGT 58.701 47.826 9.46 0.00 0.00 4.51
2653 2656 3.071747 GCTCCTAGGGTTTCTCTTATGGG 59.928 52.174 9.46 0.00 0.00 4.00
2654 2657 3.711704 TGCTCCTAGGGTTTCTCTTATGG 59.288 47.826 9.46 0.00 0.00 2.74
2655 2658 5.512232 GGATGCTCCTAGGGTTTCTCTTATG 60.512 48.000 9.46 0.00 32.53 1.90
2656 2659 4.595350 GGATGCTCCTAGGGTTTCTCTTAT 59.405 45.833 9.46 0.00 32.53 1.73
2657 2660 3.967987 GGATGCTCCTAGGGTTTCTCTTA 59.032 47.826 9.46 0.00 32.53 2.10
2658 2661 2.774809 GGATGCTCCTAGGGTTTCTCTT 59.225 50.000 9.46 0.00 32.53 2.85
2659 2662 2.403561 GGATGCTCCTAGGGTTTCTCT 58.596 52.381 9.46 0.00 32.53 3.10
2660 2663 2.920724 GGATGCTCCTAGGGTTTCTC 57.079 55.000 9.46 0.05 32.53 2.87
2671 2674 9.125026 CAAATAATATGGGTTATAGGATGCTCC 57.875 37.037 0.00 0.00 36.58 4.70
2672 2675 9.686683 ACAAATAATATGGGTTATAGGATGCTC 57.313 33.333 0.00 0.00 0.00 4.26
2746 2749 9.689976 CAGACAACAATCAAACAAATAACCATA 57.310 29.630 0.00 0.00 0.00 2.74
2747 2750 8.420222 TCAGACAACAATCAAACAAATAACCAT 58.580 29.630 0.00 0.00 0.00 3.55
2748 2751 7.776107 TCAGACAACAATCAAACAAATAACCA 58.224 30.769 0.00 0.00 0.00 3.67
2749 2752 8.816640 ATCAGACAACAATCAAACAAATAACC 57.183 30.769 0.00 0.00 0.00 2.85
2753 2756 9.550406 AATCAATCAGACAACAATCAAACAAAT 57.450 25.926 0.00 0.00 0.00 2.32
2754 2757 8.819015 CAATCAATCAGACAACAATCAAACAAA 58.181 29.630 0.00 0.00 0.00 2.83
2755 2758 7.980662 ACAATCAATCAGACAACAATCAAACAA 59.019 29.630 0.00 0.00 0.00 2.83
2756 2759 7.435784 CACAATCAATCAGACAACAATCAAACA 59.564 33.333 0.00 0.00 0.00 2.83
2757 2760 7.436080 ACACAATCAATCAGACAACAATCAAAC 59.564 33.333 0.00 0.00 0.00 2.93
2758 2761 7.435784 CACACAATCAATCAGACAACAATCAAA 59.564 33.333 0.00 0.00 0.00 2.69
2759 2762 6.919115 CACACAATCAATCAGACAACAATCAA 59.081 34.615 0.00 0.00 0.00 2.57
2760 2763 6.262720 TCACACAATCAATCAGACAACAATCA 59.737 34.615 0.00 0.00 0.00 2.57
2761 2764 6.671190 TCACACAATCAATCAGACAACAATC 58.329 36.000 0.00 0.00 0.00 2.67
2762 2765 6.638096 TCACACAATCAATCAGACAACAAT 57.362 33.333 0.00 0.00 0.00 2.71
2763 2766 6.448207 TTCACACAATCAATCAGACAACAA 57.552 33.333 0.00 0.00 0.00 2.83
2764 2767 6.448207 TTTCACACAATCAATCAGACAACA 57.552 33.333 0.00 0.00 0.00 3.33
2765 2768 7.648908 TCAATTTCACACAATCAATCAGACAAC 59.351 33.333 0.00 0.00 0.00 3.32
2766 2769 7.714703 TCAATTTCACACAATCAATCAGACAA 58.285 30.769 0.00 0.00 0.00 3.18
2767 2770 7.013559 ACTCAATTTCACACAATCAATCAGACA 59.986 33.333 0.00 0.00 0.00 3.41
2768 2771 7.325338 CACTCAATTTCACACAATCAATCAGAC 59.675 37.037 0.00 0.00 0.00 3.51
2769 2772 7.229106 TCACTCAATTTCACACAATCAATCAGA 59.771 33.333 0.00 0.00 0.00 3.27
2770 2773 7.364970 TCACTCAATTTCACACAATCAATCAG 58.635 34.615 0.00 0.00 0.00 2.90
2771 2774 7.274603 TCACTCAATTTCACACAATCAATCA 57.725 32.000 0.00 0.00 0.00 2.57
2772 2775 8.578308 TTTCACTCAATTTCACACAATCAATC 57.422 30.769 0.00 0.00 0.00 2.67
2773 2776 9.550406 AATTTCACTCAATTTCACACAATCAAT 57.450 25.926 0.00 0.00 0.00 2.57
2774 2777 8.945481 AATTTCACTCAATTTCACACAATCAA 57.055 26.923 0.00 0.00 0.00 2.57
2775 2778 8.819015 CAAATTTCACTCAATTTCACACAATCA 58.181 29.630 0.00 0.00 34.70 2.57
2776 2779 9.033481 TCAAATTTCACTCAATTTCACACAATC 57.967 29.630 0.00 0.00 34.70 2.67
2777 2780 8.945481 TCAAATTTCACTCAATTTCACACAAT 57.055 26.923 0.00 0.00 34.70 2.71
2778 2781 8.768957 TTCAAATTTCACTCAATTTCACACAA 57.231 26.923 0.00 0.00 34.70 3.33
2779 2782 8.655092 GTTTCAAATTTCACTCAATTTCACACA 58.345 29.630 0.00 0.00 34.70 3.72
2780 2783 8.116136 GGTTTCAAATTTCACTCAATTTCACAC 58.884 33.333 0.00 0.00 34.70 3.82
2781 2784 8.040132 AGGTTTCAAATTTCACTCAATTTCACA 58.960 29.630 0.00 0.00 34.70 3.58
2782 2785 8.424274 AGGTTTCAAATTTCACTCAATTTCAC 57.576 30.769 0.00 0.00 34.70 3.18
2783 2786 9.447157 AAAGGTTTCAAATTTCACTCAATTTCA 57.553 25.926 0.00 0.00 34.70 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.