Multiple sequence alignment - TraesCS1A01G195700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G195700 chr1A 100.000 6868 0 0 1 6868 353632175 353625308 0.000000e+00 12683.0
1 TraesCS1A01G195700 chr1A 78.979 333 47 7 6544 6865 564659493 564659813 9.030000e-49 206.0
2 TraesCS1A01G195700 chr1D 93.490 5653 205 55 132 5701 281374069 281379641 0.000000e+00 8250.0
3 TraesCS1A01G195700 chr1D 90.240 1250 55 21 5652 6868 281379634 281380849 0.000000e+00 1570.0
4 TraesCS1A01G195700 chr1D 89.899 99 6 4 13 111 104593545 104593451 2.600000e-24 124.0
5 TraesCS1A01G195700 chr1B 92.517 5653 228 61 141 5701 382227368 382221819 0.000000e+00 7915.0
6 TraesCS1A01G195700 chr1B 92.500 280 11 2 5652 5921 382221826 382221547 6.460000e-105 392.0
7 TraesCS1A01G195700 chr1B 90.476 294 10 6 5952 6235 382221550 382221265 8.410000e-99 372.0
8 TraesCS1A01G195700 chr1B 82.635 334 44 5 6544 6865 565691808 565692139 4.050000e-72 283.0
9 TraesCS1A01G195700 chr3D 82.789 337 44 7 6546 6868 271486903 271486567 8.720000e-74 289.0
10 TraesCS1A01G195700 chr3D 80.060 336 45 6 6544 6868 83937167 83937491 5.360000e-56 230.0
11 TraesCS1A01G195700 chr3A 80.357 336 54 5 6544 6868 447619903 447619569 1.910000e-60 244.0
12 TraesCS1A01G195700 chr3A 83.036 112 16 3 7 118 24061978 24061870 1.580000e-16 99.0
13 TraesCS1A01G195700 chrUn 76.023 342 62 13 6544 6868 34063612 34063950 7.130000e-35 159.0
14 TraesCS1A01G195700 chrUn 75.723 346 56 19 6544 6868 35845843 35846181 1.540000e-31 148.0
15 TraesCS1A01G195700 chr5B 86.792 106 13 1 7 111 639733594 639733699 4.350000e-22 117.0
16 TraesCS1A01G195700 chr5B 85.849 106 14 1 7 112 641249324 641249428 2.020000e-20 111.0
17 TraesCS1A01G195700 chr4A 86.792 106 12 2 7 111 59252663 59252559 4.350000e-22 117.0
18 TraesCS1A01G195700 chr2B 86.792 106 13 1 7 111 746355003 746355108 4.350000e-22 117.0
19 TraesCS1A01G195700 chr2B 91.549 71 6 0 18 88 767465863 767465933 1.580000e-16 99.0
20 TraesCS1A01G195700 chr2B 93.220 59 4 0 30 88 767465399 767465457 3.410000e-13 87.9
21 TraesCS1A01G195700 chr5D 81.119 143 24 3 6544 6684 461853215 461853074 2.020000e-20 111.0
22 TraesCS1A01G195700 chr7A 84.071 113 17 1 7 118 64737338 64737226 2.620000e-19 108.0
23 TraesCS1A01G195700 chr7A 87.059 85 8 2 6787 6868 418110237 418110321 7.330000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G195700 chr1A 353625308 353632175 6867 True 12683 12683 100.000 1 6868 1 chr1A.!!$R1 6867
1 TraesCS1A01G195700 chr1D 281374069 281380849 6780 False 4910 8250 91.865 132 6868 2 chr1D.!!$F1 6736
2 TraesCS1A01G195700 chr1B 382221265 382227368 6103 True 2893 7915 91.831 141 6235 3 chr1B.!!$R1 6094

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
437 438 0.035056 AGAAAGACAATGGGCGGAGG 60.035 55.0 0.00 0.00 0.00 4.30 F
1186 1290 0.037046 ATTACCGCGTCGTTTTCCCT 60.037 50.0 4.92 0.00 0.00 4.20 F
1664 1774 0.109365 TTGCATTCCATTGTTCGGCG 60.109 50.0 0.00 0.00 0.00 6.46 F
2331 2443 0.614697 TCAGGAATGGGCTCGAGACA 60.615 55.0 22.31 16.37 0.00 3.41 F
2779 2891 1.146637 GCATTTGCAAAATCGTGGCA 58.853 45.0 17.19 0.00 41.59 4.92 F
4646 4772 0.541392 TCATGGTCGATCAGTTGGGG 59.459 55.0 3.97 0.00 0.00 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1482 1587 0.038251 TGACTTCTCACGCAGCGAAT 60.038 50.0 24.65 0.00 0.00 3.34 R
2779 2891 0.951040 GCACAGAAGCGCTTACAGGT 60.951 55.0 25.11 15.47 0.00 4.00 R
3222 3335 0.045469 AAAGGGAGAGAGGGGAGCAT 59.955 55.0 0.00 0.00 0.00 3.79 R
3224 3337 0.326143 AGAAAGGGAGAGAGGGGAGC 60.326 60.0 0.00 0.00 0.00 4.70 R
4763 4889 0.396974 ACCTTTGGTTCTGCAGGCAA 60.397 50.0 15.13 0.00 27.29 4.52 R
6254 6446 0.169009 CTAGCGCTGCCCTTGTTTTC 59.831 55.0 22.90 0.00 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.445699 CTAAGAGTGCGCCCATCC 57.554 61.111 4.18 0.00 0.00 3.51
18 19 1.592669 CTAAGAGTGCGCCCATCCG 60.593 63.158 4.18 0.00 0.00 4.18
19 20 2.298158 CTAAGAGTGCGCCCATCCGT 62.298 60.000 4.18 0.00 0.00 4.69
20 21 1.038681 TAAGAGTGCGCCCATCCGTA 61.039 55.000 4.18 0.00 0.00 4.02
21 22 2.573609 AAGAGTGCGCCCATCCGTAC 62.574 60.000 4.18 0.00 42.84 3.67
22 23 3.075005 AGTGCGCCCATCCGTACT 61.075 61.111 4.18 0.00 46.66 2.73
23 24 2.585247 GTGCGCCCATCCGTACTC 60.585 66.667 4.18 0.00 40.05 2.59
24 25 3.845259 TGCGCCCATCCGTACTCC 61.845 66.667 4.18 0.00 0.00 3.85
25 26 4.603946 GCGCCCATCCGTACTCCC 62.604 72.222 0.00 0.00 0.00 4.30
26 27 3.151710 CGCCCATCCGTACTCCCA 61.152 66.667 0.00 0.00 0.00 4.37
27 28 2.504519 GCCCATCCGTACTCCCAC 59.495 66.667 0.00 0.00 0.00 4.61
28 29 3.103091 GCCCATCCGTACTCCCACC 62.103 68.421 0.00 0.00 0.00 4.61
29 30 1.382695 CCCATCCGTACTCCCACCT 60.383 63.158 0.00 0.00 0.00 4.00
30 31 0.105862 CCCATCCGTACTCCCACCTA 60.106 60.000 0.00 0.00 0.00 3.08
31 32 1.038280 CCATCCGTACTCCCACCTAC 58.962 60.000 0.00 0.00 0.00 3.18
32 33 0.666913 CATCCGTACTCCCACCTACG 59.333 60.000 0.00 0.00 36.35 3.51
33 34 0.257039 ATCCGTACTCCCACCTACGT 59.743 55.000 0.00 0.00 35.09 3.57
34 35 0.677731 TCCGTACTCCCACCTACGTG 60.678 60.000 0.00 0.00 39.91 4.49
47 48 5.560966 CACCTACGTGGCTTGATTTAATT 57.439 39.130 0.00 0.00 40.22 1.40
48 49 5.331902 CACCTACGTGGCTTGATTTAATTG 58.668 41.667 0.00 0.00 40.22 2.32
49 50 5.123186 CACCTACGTGGCTTGATTTAATTGA 59.877 40.000 0.00 0.00 40.22 2.57
50 51 5.708230 ACCTACGTGGCTTGATTTAATTGAA 59.292 36.000 0.00 0.00 40.22 2.69
51 52 6.207810 ACCTACGTGGCTTGATTTAATTGAAA 59.792 34.615 0.00 0.00 40.22 2.69
52 53 6.526674 CCTACGTGGCTTGATTTAATTGAAAC 59.473 38.462 0.00 0.00 0.00 2.78
53 54 5.837437 ACGTGGCTTGATTTAATTGAAACA 58.163 33.333 0.00 0.00 0.00 2.83
54 55 6.276847 ACGTGGCTTGATTTAATTGAAACAA 58.723 32.000 5.70 5.70 0.00 2.83
55 56 6.758886 ACGTGGCTTGATTTAATTGAAACAAA 59.241 30.769 7.01 0.00 0.00 2.83
56 57 7.278868 ACGTGGCTTGATTTAATTGAAACAAAA 59.721 29.630 7.01 0.00 0.00 2.44
57 58 8.281893 CGTGGCTTGATTTAATTGAAACAAAAT 58.718 29.630 7.01 0.00 0.00 1.82
67 68 8.825667 TTAATTGAAACAAAATAAGGCCTGAC 57.174 30.769 5.69 0.00 0.00 3.51
68 69 6.670695 ATTGAAACAAAATAAGGCCTGACT 57.329 33.333 5.69 0.00 0.00 3.41
69 70 5.705609 TGAAACAAAATAAGGCCTGACTC 57.294 39.130 5.69 0.00 0.00 3.36
70 71 4.522789 TGAAACAAAATAAGGCCTGACTCC 59.477 41.667 5.69 0.00 0.00 3.85
71 72 3.806949 ACAAAATAAGGCCTGACTCCA 57.193 42.857 5.69 0.00 0.00 3.86
72 73 4.322057 ACAAAATAAGGCCTGACTCCAT 57.678 40.909 5.69 0.00 0.00 3.41
73 74 4.273318 ACAAAATAAGGCCTGACTCCATC 58.727 43.478 5.69 0.00 0.00 3.51
74 75 3.584733 AAATAAGGCCTGACTCCATCC 57.415 47.619 5.69 0.00 0.00 3.51
75 76 1.439543 ATAAGGCCTGACTCCATCCC 58.560 55.000 5.69 0.00 0.00 3.85
76 77 0.694444 TAAGGCCTGACTCCATCCCC 60.694 60.000 5.69 0.00 0.00 4.81
77 78 2.367512 GGCCTGACTCCATCCCCT 60.368 66.667 0.00 0.00 0.00 4.79
78 79 2.003548 GGCCTGACTCCATCCCCTT 61.004 63.158 0.00 0.00 0.00 3.95
79 80 0.694444 GGCCTGACTCCATCCCCTTA 60.694 60.000 0.00 0.00 0.00 2.69
80 81 1.213296 GCCTGACTCCATCCCCTTAA 58.787 55.000 0.00 0.00 0.00 1.85
81 82 1.564348 GCCTGACTCCATCCCCTTAAA 59.436 52.381 0.00 0.00 0.00 1.52
82 83 2.025321 GCCTGACTCCATCCCCTTAAAA 60.025 50.000 0.00 0.00 0.00 1.52
83 84 3.373110 GCCTGACTCCATCCCCTTAAAAT 60.373 47.826 0.00 0.00 0.00 1.82
84 85 4.464947 CCTGACTCCATCCCCTTAAAATC 58.535 47.826 0.00 0.00 0.00 2.17
85 86 4.079787 CCTGACTCCATCCCCTTAAAATCA 60.080 45.833 0.00 0.00 0.00 2.57
86 87 5.116084 TGACTCCATCCCCTTAAAATCAG 57.884 43.478 0.00 0.00 0.00 2.90
87 88 4.788075 TGACTCCATCCCCTTAAAATCAGA 59.212 41.667 0.00 0.00 0.00 3.27
88 89 5.104360 TGACTCCATCCCCTTAAAATCAGAG 60.104 44.000 0.00 0.00 0.00 3.35
89 90 4.166919 ACTCCATCCCCTTAAAATCAGAGG 59.833 45.833 0.00 0.00 0.00 3.69
94 95 3.584733 CCCTTAAAATCAGAGGGGGAG 57.415 52.381 0.00 0.00 45.27 4.30
95 96 3.123273 CCCTTAAAATCAGAGGGGGAGA 58.877 50.000 0.00 0.00 45.27 3.71
96 97 3.724209 CCCTTAAAATCAGAGGGGGAGAT 59.276 47.826 0.00 0.00 45.27 2.75
97 98 4.446889 CCCTTAAAATCAGAGGGGGAGATG 60.447 50.000 0.00 0.00 45.27 2.90
98 99 4.413520 CCTTAAAATCAGAGGGGGAGATGA 59.586 45.833 0.00 0.00 0.00 2.92
99 100 5.074239 CCTTAAAATCAGAGGGGGAGATGAT 59.926 44.000 0.00 0.00 33.91 2.45
100 101 6.411320 CCTTAAAATCAGAGGGGGAGATGATT 60.411 42.308 0.00 0.00 42.61 2.57
101 102 7.202223 CCTTAAAATCAGAGGGGGAGATGATTA 60.202 40.741 0.15 0.00 40.54 1.75
102 103 6.596869 AAAATCAGAGGGGGAGATGATTAA 57.403 37.500 0.15 0.00 40.54 1.40
103 104 6.596869 AAATCAGAGGGGGAGATGATTAAA 57.403 37.500 0.15 0.00 40.54 1.52
104 105 6.793518 AATCAGAGGGGGAGATGATTAAAT 57.206 37.500 0.00 0.00 39.85 1.40
105 106 6.793518 ATCAGAGGGGGAGATGATTAAATT 57.206 37.500 0.00 0.00 0.00 1.82
106 107 7.895144 ATCAGAGGGGGAGATGATTAAATTA 57.105 36.000 0.00 0.00 0.00 1.40
107 108 7.705912 TCAGAGGGGGAGATGATTAAATTAA 57.294 36.000 0.00 0.00 0.00 1.40
108 109 8.113114 TCAGAGGGGGAGATGATTAAATTAAA 57.887 34.615 0.00 0.00 0.00 1.52
109 110 8.565239 TCAGAGGGGGAGATGATTAAATTAAAA 58.435 33.333 0.00 0.00 0.00 1.52
110 111 9.200817 CAGAGGGGGAGATGATTAAATTAAAAA 57.799 33.333 0.00 0.00 0.00 1.94
111 112 9.426534 AGAGGGGGAGATGATTAAATTAAAAAG 57.573 33.333 0.00 0.00 0.00 2.27
112 113 9.201989 GAGGGGGAGATGATTAAATTAAAAAGT 57.798 33.333 0.00 0.00 0.00 2.66
128 129 9.687210 AATTAAAAAGTAAAAACAGGTCGGATC 57.313 29.630 0.00 0.00 0.00 3.36
129 130 5.700722 AAAAGTAAAAACAGGTCGGATCC 57.299 39.130 0.00 0.00 0.00 3.36
130 131 3.345508 AGTAAAAACAGGTCGGATCCC 57.654 47.619 6.06 0.00 0.00 3.85
131 132 2.910977 AGTAAAAACAGGTCGGATCCCT 59.089 45.455 6.06 0.00 0.00 4.20
132 133 2.491675 AAAAACAGGTCGGATCCCTC 57.508 50.000 6.06 0.00 0.00 4.30
133 134 1.657804 AAAACAGGTCGGATCCCTCT 58.342 50.000 6.06 0.00 0.00 3.69
134 135 1.196012 AAACAGGTCGGATCCCTCTC 58.804 55.000 6.06 0.00 0.00 3.20
135 136 0.688087 AACAGGTCGGATCCCTCTCC 60.688 60.000 6.06 3.69 0.00 3.71
136 137 1.075970 CAGGTCGGATCCCTCTCCA 60.076 63.158 6.06 0.00 34.78 3.86
137 138 1.112315 CAGGTCGGATCCCTCTCCAG 61.112 65.000 6.06 0.00 34.78 3.86
138 139 2.503382 GGTCGGATCCCTCTCCAGC 61.503 68.421 6.06 0.00 34.78 4.85
139 140 2.123251 TCGGATCCCTCTCCAGCC 60.123 66.667 6.06 0.00 34.78 4.85
220 221 9.122613 GAGTAGTTCATTCAATCAAGAAAAAGC 57.877 33.333 0.00 0.00 0.00 3.51
222 223 9.248291 GTAGTTCATTCAATCAAGAAAAAGCAA 57.752 29.630 0.00 0.00 0.00 3.91
270 271 1.695114 AAGCACCTTTTGGGCCAACC 61.695 55.000 20.79 3.41 46.08 3.77
302 303 1.229400 TCCCAGGTGGTGGTAGGAC 60.229 63.158 0.00 0.00 46.37 3.85
384 385 3.207547 CTCGTGTCACACAGGCGGA 62.208 63.158 9.06 0.00 34.28 5.54
394 395 3.522731 CAGGCGGACGAGAGGAGG 61.523 72.222 0.00 0.00 0.00 4.30
434 435 2.162681 AGAAAGAAAGACAATGGGCGG 58.837 47.619 0.00 0.00 0.00 6.13
435 436 2.159382 GAAAGAAAGACAATGGGCGGA 58.841 47.619 0.00 0.00 0.00 5.54
437 438 0.035056 AGAAAGACAATGGGCGGAGG 60.035 55.000 0.00 0.00 0.00 4.30
494 513 2.259511 GGACGCGGTTCCGTTAGT 59.740 61.111 12.47 10.24 42.24 2.24
496 515 2.048877 ACGCGGTTCCGTTAGTGG 60.049 61.111 12.47 0.00 38.47 4.00
497 516 2.259204 CGCGGTTCCGTTAGTGGA 59.741 61.111 12.81 0.00 35.83 4.02
656 734 2.529389 ATATCACCCTCCCCGCCC 60.529 66.667 0.00 0.00 0.00 6.13
847 943 2.934553 GGAAAATAACCGACGGAAGGAG 59.065 50.000 23.38 0.00 0.00 3.69
859 955 0.340208 GGAAGGAGGAGGAAGGAGGA 59.660 60.000 0.00 0.00 0.00 3.71
1026 1122 4.292178 CGCGAGATCTGCCTCCCC 62.292 72.222 0.00 0.00 0.00 4.81
1029 1125 1.764054 CGAGATCTGCCTCCCCCTT 60.764 63.158 0.00 0.00 0.00 3.95
1030 1126 1.753368 CGAGATCTGCCTCCCCCTTC 61.753 65.000 0.00 0.00 0.00 3.46
1125 1227 1.910819 CAATTAATGCGTGTTCGTGGC 59.089 47.619 0.00 0.00 39.49 5.01
1150 1252 2.755655 TCACTGTTCGATTCCTCTCTCC 59.244 50.000 0.00 0.00 0.00 3.71
1186 1290 0.037046 ATTACCGCGTCGTTTTCCCT 60.037 50.000 4.92 0.00 0.00 4.20
1255 1359 0.526096 CGCGCCAATTGGGAGAATTG 60.526 55.000 25.73 0.00 39.08 2.32
1259 1363 2.417243 CGCCAATTGGGAGAATTGTTCC 60.417 50.000 25.73 3.59 39.08 3.62
1361 1465 1.961394 GTTGGAAAACCAGGAGGAACC 59.039 52.381 0.00 0.00 38.69 3.62
1366 1470 4.140900 TGGAAAACCAGGAGGAACCATTTA 60.141 41.667 0.00 0.00 42.04 1.40
1406 1511 9.757227 TTTGTTTTTGGATTTGTTCATAGGTAG 57.243 29.630 0.00 0.00 0.00 3.18
1407 1512 8.472007 TGTTTTTGGATTTGTTCATAGGTAGT 57.528 30.769 0.00 0.00 0.00 2.73
1408 1513 9.575868 TGTTTTTGGATTTGTTCATAGGTAGTA 57.424 29.630 0.00 0.00 0.00 1.82
1449 1554 1.602377 GTATTAATTTGGCCTCGCGCT 59.398 47.619 5.56 0.00 37.74 5.92
1451 1556 1.701545 TTAATTTGGCCTCGCGCTCG 61.702 55.000 5.56 0.00 37.74 5.03
1452 1557 2.845752 TAATTTGGCCTCGCGCTCGT 62.846 55.000 5.56 0.00 37.74 4.18
1475 1580 2.883386 CTCGCCCGTTAGGATTAGTAGT 59.117 50.000 0.00 0.00 41.02 2.73
1476 1581 4.067896 CTCGCCCGTTAGGATTAGTAGTA 58.932 47.826 0.00 0.00 41.02 1.82
1477 1582 4.067896 TCGCCCGTTAGGATTAGTAGTAG 58.932 47.826 0.00 0.00 41.02 2.57
1478 1583 4.067896 CGCCCGTTAGGATTAGTAGTAGA 58.932 47.826 0.00 0.00 41.02 2.59
1479 1584 4.699257 CGCCCGTTAGGATTAGTAGTAGAT 59.301 45.833 0.00 0.00 41.02 1.98
1480 1585 5.877012 CGCCCGTTAGGATTAGTAGTAGATA 59.123 44.000 0.00 0.00 41.02 1.98
1481 1586 6.036953 CGCCCGTTAGGATTAGTAGTAGATAG 59.963 46.154 0.00 0.00 41.02 2.08
1482 1587 7.108847 GCCCGTTAGGATTAGTAGTAGATAGA 58.891 42.308 0.00 0.00 41.02 1.98
1483 1588 7.774625 GCCCGTTAGGATTAGTAGTAGATAGAT 59.225 40.741 0.00 0.00 41.02 1.98
1484 1589 9.683870 CCCGTTAGGATTAGTAGTAGATAGATT 57.316 37.037 0.00 0.00 41.02 2.40
1542 1650 9.704098 GCTTCTACCAGTATTTATTTTTCTTCG 57.296 33.333 0.00 0.00 0.00 3.79
1595 1705 2.282820 GCTCGTGCTAAATCACTGCTAC 59.717 50.000 1.41 0.00 34.92 3.58
1603 1713 6.913673 GTGCTAAATCACTGCTACTAGTACTC 59.086 42.308 0.00 0.00 34.29 2.59
1664 1774 0.109365 TTGCATTCCATTGTTCGGCG 60.109 50.000 0.00 0.00 0.00 6.46
1762 1872 6.090898 CGTAATTCTACCTTTGACCAAGTCTG 59.909 42.308 0.00 0.00 33.15 3.51
1776 1886 3.694566 CCAAGTCTGCAAATTAGTACCCC 59.305 47.826 0.00 0.00 0.00 4.95
1794 1904 3.074687 ACCCCTTTTCCTCTTCCTTTCTC 59.925 47.826 0.00 0.00 0.00 2.87
1795 1905 3.339141 CCCTTTTCCTCTTCCTTTCTCG 58.661 50.000 0.00 0.00 0.00 4.04
1800 1910 1.216710 CTCTTCCTTTCTCGCCGCT 59.783 57.895 0.00 0.00 0.00 5.52
1893 2003 6.142817 CGTGGATTCGAAATTTATGGATTCC 58.857 40.000 0.00 14.41 32.34 3.01
1976 2086 7.490000 CCACGAGATACAGTAGGACTTTTTAT 58.510 38.462 0.00 0.00 0.00 1.40
1977 2087 8.627403 CCACGAGATACAGTAGGACTTTTTATA 58.373 37.037 0.00 0.00 0.00 0.98
1978 2088 9.666626 CACGAGATACAGTAGGACTTTTTATAG 57.333 37.037 0.00 0.00 0.00 1.31
2219 2331 2.126346 GTCAATGCCGGCTTGCAC 60.126 61.111 29.70 21.02 45.48 4.57
2331 2443 0.614697 TCAGGAATGGGCTCGAGACA 60.615 55.000 22.31 16.37 0.00 3.41
2406 2518 2.055633 CAATCCTGCCATGGCTGCA 61.056 57.895 35.53 23.84 42.51 4.41
2469 2581 2.093869 GGTGAGATTGCATGCCAACAAT 60.094 45.455 16.68 8.03 39.16 2.71
2520 2632 5.025453 AGTGCCCAGAACAATAATCCATTT 58.975 37.500 0.00 0.00 0.00 2.32
2545 2657 1.569493 CGCAAGGTGGACAAGTTCG 59.431 57.895 0.00 0.00 0.00 3.95
2652 2764 5.467399 TGCGTATATACAGAAAATTTCCCCG 59.533 40.000 13.22 0.00 0.00 5.73
2680 2792 4.895668 TCAAAATACGGTACACCTTCCT 57.104 40.909 0.00 0.00 0.00 3.36
2690 2802 4.576879 GGTACACCTTCCTTTTACCTCAG 58.423 47.826 0.00 0.00 31.19 3.35
2699 2811 4.918588 TCCTTTTACCTCAGACCCATTTC 58.081 43.478 0.00 0.00 0.00 2.17
2708 2820 2.108075 TCAGACCCATTTCTCTTGCCAA 59.892 45.455 0.00 0.00 0.00 4.52
2740 2852 8.690203 ACCGAATGGATGAATAAATAATGACA 57.310 30.769 0.00 0.00 39.21 3.58
2773 2885 3.194116 TCTCTCCAGGCATTTGCAAAATC 59.806 43.478 17.19 10.48 44.36 2.17
2779 2891 1.146637 GCATTTGCAAAATCGTGGCA 58.853 45.000 17.19 0.00 41.59 4.92
2848 2960 5.068591 ACAACCTGGTTTTAAGTTCATGACC 59.931 40.000 9.90 0.00 0.00 4.02
2851 2963 5.376854 CTGGTTTTAAGTTCATGACCAGG 57.623 43.478 15.00 0.00 46.45 4.45
2890 3002 1.745141 GCTGAATGGGCTGAAGACGAT 60.745 52.381 0.00 0.00 0.00 3.73
2893 3005 2.499693 TGAATGGGCTGAAGACGATACA 59.500 45.455 0.00 0.00 0.00 2.29
2920 3032 4.202326 ACTTTCTTTATGAGTGGACGGTGT 60.202 41.667 0.00 0.00 0.00 4.16
2933 3045 1.269998 GACGGTGTGCTACTCTCTGTT 59.730 52.381 0.00 0.00 0.00 3.16
2963 3076 6.013206 TCAGTACCCTATTTAGTTTGCCTTCA 60.013 38.462 0.00 0.00 0.00 3.02
3094 3207 1.970092 CTAGGTACGTGGAGGAGGAG 58.030 60.000 0.00 0.00 0.00 3.69
3176 3289 2.304470 GGGAGTGCCTTCTCTTCTTCTT 59.696 50.000 0.00 0.00 35.11 2.52
3266 3389 2.550855 CCTGTGTGTGATGTTGGCTACT 60.551 50.000 0.01 0.00 0.00 2.57
3268 3391 3.550820 TGTGTGTGATGTTGGCTACTTT 58.449 40.909 0.01 0.00 0.00 2.66
3279 3402 8.100791 TGATGTTGGCTACTTTACAGTCTTATT 58.899 33.333 0.01 0.00 34.06 1.40
3280 3403 7.900782 TGTTGGCTACTTTACAGTCTTATTC 57.099 36.000 0.01 0.00 34.06 1.75
3281 3404 7.446769 TGTTGGCTACTTTACAGTCTTATTCA 58.553 34.615 0.01 0.00 34.06 2.57
3286 3409 9.331282 GGCTACTTTACAGTCTTATTCATGATT 57.669 33.333 0.00 0.00 34.06 2.57
3359 3482 1.298157 TTCTGCAGACGCCAATTCCG 61.298 55.000 18.03 0.00 37.32 4.30
3452 3575 4.168101 ACTCTGATCCAAAACAGGGAGTA 58.832 43.478 0.00 0.00 37.94 2.59
3689 3812 2.165167 TGCTGCTCCTGGATTTGAAAG 58.835 47.619 0.00 0.00 0.00 2.62
3747 3870 0.835276 CTGGTGATGGAGAGGATGCA 59.165 55.000 0.00 0.00 0.00 3.96
3870 3993 6.091713 AGTTTGTTATAACATTCCCTCGTTCG 59.908 38.462 18.69 0.00 38.95 3.95
3931 4057 7.770897 TCTTCTATCTTCTGCTTGGTAATTTCC 59.229 37.037 0.00 0.00 0.00 3.13
4102 4228 1.071605 CACACGAGGAGCTACTTTGC 58.928 55.000 0.00 0.00 0.00 3.68
4432 4558 6.715264 CCCTCAAGTTTGTATTTTACCTGACT 59.285 38.462 0.00 0.00 0.00 3.41
4433 4559 7.881232 CCCTCAAGTTTGTATTTTACCTGACTA 59.119 37.037 0.00 0.00 0.00 2.59
4591 4717 5.234466 AGGAAACAAGTGCTAATGTCTCT 57.766 39.130 0.00 0.00 0.00 3.10
4635 4761 5.240121 TGATATTGGTGATGATCATGGTCG 58.760 41.667 14.30 0.00 0.00 4.79
4646 4772 0.541392 TCATGGTCGATCAGTTGGGG 59.459 55.000 3.97 0.00 0.00 4.96
4660 4786 0.623723 TTGGGGCTAACCAGGACATC 59.376 55.000 0.00 0.00 42.47 3.06
4712 4838 1.598130 GCTGCTGACGGTGGAAAGT 60.598 57.895 0.00 0.00 0.00 2.66
4723 4849 0.868406 GTGGAAAGTGTTCTCCTGCG 59.132 55.000 0.00 0.00 33.92 5.18
4763 4889 1.374252 GCACATCGTGACGGGTCTT 60.374 57.895 4.70 0.00 35.23 3.01
4802 4928 2.597305 GTCAGTTTACCGCACTCGTATG 59.403 50.000 0.00 0.00 0.00 2.39
4842 4968 6.828785 ACTGTTGTCTTTCAGTTTGAGGTAAT 59.171 34.615 0.00 0.00 41.33 1.89
4843 4969 7.990886 ACTGTTGTCTTTCAGTTTGAGGTAATA 59.009 33.333 0.00 0.00 41.33 0.98
4874 5000 2.275134 TTTCAGTTCCATGCAGCTCA 57.725 45.000 0.00 0.00 0.00 4.26
4878 5004 1.884579 CAGTTCCATGCAGCTCAAACT 59.115 47.619 0.00 0.00 0.00 2.66
4932 5058 6.377996 TCATAAAAACATCATCAGTGGAAGGG 59.622 38.462 0.00 0.00 0.00 3.95
4940 5066 0.991920 TCAGTGGAAGGGAATGGTCC 59.008 55.000 0.00 0.00 44.10 4.46
4942 5068 0.840722 AGTGGAAGGGAATGGTCCGT 60.841 55.000 0.00 0.00 46.04 4.69
5038 5164 5.748402 ACAGTGGCAATTCTGATTCTGATA 58.252 37.500 10.22 0.00 35.84 2.15
5046 5172 8.411683 GGCAATTCTGATTCTGATACTGAAATT 58.588 33.333 0.00 0.00 0.00 1.82
5064 5190 1.227999 TTTTCCGAGTCAAGCGCAGG 61.228 55.000 11.47 0.00 0.00 4.85
5097 5223 1.470632 GGAAGATCTGCTCCTGACACG 60.471 57.143 6.24 0.00 0.00 4.49
5191 5319 9.479549 TCAAAGAGGAAGCCAATCTATTTTTAT 57.520 29.630 0.00 0.00 0.00 1.40
5194 5322 9.479549 AAGAGGAAGCCAATCTATTTTTATTCA 57.520 29.630 0.00 0.00 0.00 2.57
5268 5396 1.871126 GAACTGCTGCTTCCTTGCCC 61.871 60.000 0.00 0.00 0.00 5.36
5289 5417 4.403432 CCCACCTCATGTGCTGATAAATTT 59.597 41.667 0.00 0.00 44.01 1.82
5333 5461 2.288961 ATAGGTTACTGAACGCGTGG 57.711 50.000 14.98 9.19 36.32 4.94
5348 5476 2.224549 CGCGTGGTTGGTAATTGAGAAA 59.775 45.455 0.00 0.00 0.00 2.52
5386 5514 4.571580 TGGAGTTTGTGTAGGTTTGTTACG 59.428 41.667 0.00 0.00 0.00 3.18
5393 5521 2.482336 TGTAGGTTTGTTACGCTGCATG 59.518 45.455 0.00 0.00 0.00 4.06
5409 5537 5.574055 CGCTGCATGTTTTGTTTCTGATATT 59.426 36.000 0.00 0.00 0.00 1.28
5410 5538 6.746822 CGCTGCATGTTTTGTTTCTGATATTA 59.253 34.615 0.00 0.00 0.00 0.98
5411 5539 7.433131 CGCTGCATGTTTTGTTTCTGATATTAT 59.567 33.333 0.00 0.00 0.00 1.28
5503 5631 1.542030 GCGACCTGAAGAAGACTCTGA 59.458 52.381 0.00 0.00 30.03 3.27
5636 5764 0.036732 TGGAAGCTCAACAAGGCGAT 59.963 50.000 0.00 0.00 0.00 4.58
5648 5776 1.526887 CAAGGCGATACCAGTTATGCG 59.473 52.381 0.00 0.00 43.14 4.73
5692 5862 1.448540 CTACCAGCAGCTGTTCCCG 60.449 63.158 21.26 7.81 0.00 5.14
5775 5945 2.292794 GATCCGGTTGCCTCGTAGCA 62.293 60.000 0.00 0.00 42.17 3.49
5777 5947 3.179265 CGGTTGCCTCGTAGCACG 61.179 66.667 1.60 2.79 43.97 5.34
5926 6105 9.658799 CAGATAGGACTCAATTCTTTGTTTAGA 57.341 33.333 0.00 0.00 34.32 2.10
6018 6197 0.761802 GAGGAGGGTAGGGCTGATTG 59.238 60.000 0.00 0.00 0.00 2.67
6019 6198 0.343372 AGGAGGGTAGGGCTGATTGA 59.657 55.000 0.00 0.00 0.00 2.57
6020 6199 1.061033 AGGAGGGTAGGGCTGATTGAT 60.061 52.381 0.00 0.00 0.00 2.57
6021 6200 1.777272 GGAGGGTAGGGCTGATTGATT 59.223 52.381 0.00 0.00 0.00 2.57
6127 6317 3.128349 GTCACGTTGTTTAGAGGCTTCA 58.872 45.455 0.00 0.00 0.00 3.02
6150 6340 3.426568 GTCACCGCTTGCTGGCTC 61.427 66.667 4.04 0.00 0.00 4.70
6164 6354 0.254178 TGGCTCCTCTTTGATGCCTC 59.746 55.000 0.00 0.00 43.57 4.70
6165 6355 0.465278 GGCTCCTCTTTGATGCCTCC 60.465 60.000 0.00 0.00 40.36 4.30
6166 6356 0.545646 GCTCCTCTTTGATGCCTCCT 59.454 55.000 0.00 0.00 0.00 3.69
6320 6512 2.484417 CGCTTACCTGCTCCTGATGAAT 60.484 50.000 0.00 0.00 0.00 2.57
6360 6560 0.400213 ATGTTGACGGGATGGTGTGT 59.600 50.000 0.00 0.00 0.00 3.72
6363 6563 0.034756 TTGACGGGATGGTGTGTGAG 59.965 55.000 0.00 0.00 0.00 3.51
6366 6566 0.762418 ACGGGATGGTGTGTGAGAAA 59.238 50.000 0.00 0.00 0.00 2.52
6418 6618 7.362401 GCAATTGAACTAATCAGTGTGGAATCT 60.362 37.037 10.34 0.00 39.77 2.40
6421 6621 8.547967 TTGAACTAATCAGTGTGGAATCTAAC 57.452 34.615 0.00 0.00 39.77 2.34
6426 6626 4.487714 TCAGTGTGGAATCTAACCCATC 57.512 45.455 0.00 0.00 34.58 3.51
6442 6642 4.028131 ACCCATCTTCATGTGAAATGCAT 58.972 39.130 0.00 0.00 33.07 3.96
6448 6648 2.597520 TCATGTGAAATGCATGCGTTG 58.402 42.857 25.23 12.79 42.34 4.10
6517 6717 4.358494 AGCACTAGAAAGTACTACAGCG 57.642 45.455 0.00 0.00 33.48 5.18
6555 6755 1.217057 ACCATCTCCAACAGCCCCAT 61.217 55.000 0.00 0.00 0.00 4.00
6569 6769 3.588742 CCCATAGGGCGTCCTTTTT 57.411 52.632 17.04 0.00 41.56 1.94
6570 6770 2.721425 CCCATAGGGCGTCCTTTTTA 57.279 50.000 17.04 0.00 41.56 1.52
6571 6771 2.294979 CCCATAGGGCGTCCTTTTTAC 58.705 52.381 17.04 0.00 41.56 2.01
6622 6822 2.412847 GCCGTCAGATCCTTGTTTTTCG 60.413 50.000 0.00 0.00 0.00 3.46
6623 6823 2.412847 CCGTCAGATCCTTGTTTTTCGC 60.413 50.000 0.00 0.00 0.00 4.70
6626 6826 1.535462 CAGATCCTTGTTTTTCGCCGT 59.465 47.619 0.00 0.00 0.00 5.68
6631 6831 2.094649 TCCTTGTTTTTCGCCGTTTTGT 60.095 40.909 0.00 0.00 0.00 2.83
6664 6864 3.733960 GGCGAACCCAAGCGGAAC 61.734 66.667 0.00 0.00 34.64 3.62
6699 6910 0.672401 TACCGGCTGAAGCGAAAAGG 60.672 55.000 0.00 0.00 43.26 3.11
6701 6912 2.176792 GGCTGAAGCGAAAAGGCG 59.823 61.111 0.00 0.00 43.26 5.52
6729 6940 0.389296 CACACTATCGGCGACACCAA 60.389 55.000 13.76 0.00 39.03 3.67
6730 6941 0.535335 ACACTATCGGCGACACCAAT 59.465 50.000 13.76 0.00 39.03 3.16
6738 6949 1.529010 CGGCGACACCAATCGATTTTC 60.529 52.381 8.21 2.13 45.13 2.29
6739 6950 1.202143 GGCGACACCAATCGATTTTCC 60.202 52.381 8.21 0.00 45.13 3.13
6740 6951 1.202143 GCGACACCAATCGATTTTCCC 60.202 52.381 8.21 0.00 45.13 3.97
6741 6952 1.062002 CGACACCAATCGATTTTCCCG 59.938 52.381 8.21 5.24 45.13 5.14
6742 6953 0.808755 ACACCAATCGATTTTCCCGC 59.191 50.000 8.21 0.00 0.00 6.13
6743 6954 0.100503 CACCAATCGATTTTCCCGCC 59.899 55.000 8.21 0.00 0.00 6.13
6744 6955 1.355210 CCAATCGATTTTCCCGCCG 59.645 57.895 8.21 0.00 0.00 6.46
6745 6956 1.373590 CCAATCGATTTTCCCGCCGT 61.374 55.000 8.21 0.00 0.00 5.68
6746 6957 0.450184 CAATCGATTTTCCCGCCGTT 59.550 50.000 8.21 0.00 0.00 4.44
6747 6958 1.135517 CAATCGATTTTCCCGCCGTTT 60.136 47.619 8.21 0.00 0.00 3.60
6748 6959 1.170442 ATCGATTTTCCCGCCGTTTT 58.830 45.000 0.00 0.00 0.00 2.43
6767 6978 3.646867 TTCCCCTTTCCCTCCATTTTT 57.353 42.857 0.00 0.00 0.00 1.94
6798 7009 2.764128 CCTTCTCCCCCGCAGCTA 60.764 66.667 0.00 0.00 0.00 3.32
6810 7021 1.144936 GCAGCTACCGCCATTCTCT 59.855 57.895 0.00 0.00 36.60 3.10
6812 7023 0.249657 CAGCTACCGCCATTCTCTCC 60.250 60.000 0.00 0.00 36.60 3.71
6839 7050 2.813474 CGCCATGCCGTCGAAGAA 60.813 61.111 0.00 0.00 39.69 2.52
6844 7055 1.860950 CCATGCCGTCGAAGAAGTATG 59.139 52.381 0.00 0.00 39.69 2.39
6846 7057 0.245266 TGCCGTCGAAGAAGTATGCA 59.755 50.000 0.00 0.00 39.69 3.96
6848 7059 1.278238 CCGTCGAAGAAGTATGCACC 58.722 55.000 0.00 0.00 39.69 5.01
6853 7064 1.473434 CGAAGAAGTATGCACCCCCTC 60.473 57.143 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.592669 CGGATGGGCGCACTCTTAG 60.593 63.158 12.74 0.00 0.00 2.18
1 2 1.038681 TACGGATGGGCGCACTCTTA 61.039 55.000 12.74 0.00 0.00 2.10
2 3 2.355986 TACGGATGGGCGCACTCTT 61.356 57.895 12.74 0.00 0.00 2.85
3 4 2.758327 TACGGATGGGCGCACTCT 60.758 61.111 12.74 0.00 0.00 3.24
4 5 2.585247 GTACGGATGGGCGCACTC 60.585 66.667 12.74 5.82 0.00 3.51
5 6 3.075005 AGTACGGATGGGCGCACT 61.075 61.111 12.74 0.00 0.00 4.40
8 9 4.603946 GGGAGTACGGATGGGCGC 62.604 72.222 0.00 0.00 0.00 6.53
9 10 3.151710 TGGGAGTACGGATGGGCG 61.152 66.667 0.00 0.00 0.00 6.13
10 11 2.504519 GTGGGAGTACGGATGGGC 59.495 66.667 0.00 0.00 0.00 5.36
11 12 0.105862 TAGGTGGGAGTACGGATGGG 60.106 60.000 0.00 0.00 0.00 4.00
12 13 1.038280 GTAGGTGGGAGTACGGATGG 58.962 60.000 0.00 0.00 0.00 3.51
13 14 0.666913 CGTAGGTGGGAGTACGGATG 59.333 60.000 0.00 0.00 38.67 3.51
14 15 0.257039 ACGTAGGTGGGAGTACGGAT 59.743 55.000 6.82 0.00 45.03 4.18
15 16 0.677731 CACGTAGGTGGGAGTACGGA 60.678 60.000 7.69 0.00 45.03 4.69
16 17 1.805254 CACGTAGGTGGGAGTACGG 59.195 63.158 7.69 0.00 45.03 4.02
25 26 5.123186 TCAATTAAATCAAGCCACGTAGGTG 59.877 40.000 8.61 8.61 43.99 4.00
26 27 5.250200 TCAATTAAATCAAGCCACGTAGGT 58.750 37.500 0.00 0.00 40.61 3.08
27 28 5.811399 TCAATTAAATCAAGCCACGTAGG 57.189 39.130 0.00 0.00 41.84 3.18
28 29 7.081349 TGTTTCAATTAAATCAAGCCACGTAG 58.919 34.615 0.00 0.00 0.00 3.51
29 30 6.971602 TGTTTCAATTAAATCAAGCCACGTA 58.028 32.000 0.00 0.00 0.00 3.57
30 31 5.837437 TGTTTCAATTAAATCAAGCCACGT 58.163 33.333 0.00 0.00 0.00 4.49
31 32 6.761731 TTGTTTCAATTAAATCAAGCCACG 57.238 33.333 0.00 0.00 0.00 4.94
41 42 9.267084 GTCAGGCCTTATTTTGTTTCAATTAAA 57.733 29.630 0.00 0.00 0.00 1.52
42 43 8.646900 AGTCAGGCCTTATTTTGTTTCAATTAA 58.353 29.630 0.00 0.00 0.00 1.40
43 44 8.189119 AGTCAGGCCTTATTTTGTTTCAATTA 57.811 30.769 0.00 0.00 0.00 1.40
44 45 7.066307 AGTCAGGCCTTATTTTGTTTCAATT 57.934 32.000 0.00 0.00 0.00 2.32
45 46 6.295292 GGAGTCAGGCCTTATTTTGTTTCAAT 60.295 38.462 0.00 0.00 0.00 2.57
46 47 5.010617 GGAGTCAGGCCTTATTTTGTTTCAA 59.989 40.000 0.00 0.00 0.00 2.69
47 48 4.522789 GGAGTCAGGCCTTATTTTGTTTCA 59.477 41.667 0.00 0.00 0.00 2.69
48 49 4.522789 TGGAGTCAGGCCTTATTTTGTTTC 59.477 41.667 0.00 0.00 0.00 2.78
49 50 4.479158 TGGAGTCAGGCCTTATTTTGTTT 58.521 39.130 0.00 0.00 0.00 2.83
50 51 4.112634 TGGAGTCAGGCCTTATTTTGTT 57.887 40.909 0.00 0.00 0.00 2.83
51 52 3.806949 TGGAGTCAGGCCTTATTTTGT 57.193 42.857 0.00 0.00 0.00 2.83
52 53 3.633986 GGATGGAGTCAGGCCTTATTTTG 59.366 47.826 0.00 0.00 0.00 2.44
53 54 3.373110 GGGATGGAGTCAGGCCTTATTTT 60.373 47.826 0.00 0.00 0.00 1.82
54 55 2.175715 GGGATGGAGTCAGGCCTTATTT 59.824 50.000 0.00 0.00 0.00 1.40
55 56 1.777272 GGGATGGAGTCAGGCCTTATT 59.223 52.381 0.00 0.00 0.00 1.40
56 57 1.439543 GGGATGGAGTCAGGCCTTAT 58.560 55.000 0.00 0.00 0.00 1.73
57 58 0.694444 GGGGATGGAGTCAGGCCTTA 60.694 60.000 0.00 0.00 0.00 2.69
58 59 2.003548 GGGGATGGAGTCAGGCCTT 61.004 63.158 0.00 0.00 0.00 4.35
59 60 2.367512 GGGGATGGAGTCAGGCCT 60.368 66.667 0.00 0.00 0.00 5.19
60 61 0.694444 TAAGGGGATGGAGTCAGGCC 60.694 60.000 0.00 0.00 0.00 5.19
61 62 1.213296 TTAAGGGGATGGAGTCAGGC 58.787 55.000 0.00 0.00 0.00 4.85
62 63 4.079787 TGATTTTAAGGGGATGGAGTCAGG 60.080 45.833 0.00 0.00 0.00 3.86
63 64 5.104360 TCTGATTTTAAGGGGATGGAGTCAG 60.104 44.000 0.00 0.00 0.00 3.51
64 65 4.788075 TCTGATTTTAAGGGGATGGAGTCA 59.212 41.667 0.00 0.00 0.00 3.41
65 66 5.372373 CTCTGATTTTAAGGGGATGGAGTC 58.628 45.833 0.00 0.00 0.00 3.36
66 67 4.166919 CCTCTGATTTTAAGGGGATGGAGT 59.833 45.833 0.00 0.00 37.50 3.85
67 68 4.446889 CCCTCTGATTTTAAGGGGATGGAG 60.447 50.000 0.00 0.00 45.18 3.86
68 69 3.463329 CCCTCTGATTTTAAGGGGATGGA 59.537 47.826 0.00 0.00 45.18 3.41
69 70 3.837355 CCCTCTGATTTTAAGGGGATGG 58.163 50.000 0.00 0.00 45.18 3.51
75 76 4.413520 TCATCTCCCCCTCTGATTTTAAGG 59.586 45.833 0.00 0.00 0.00 2.69
76 77 5.636903 TCATCTCCCCCTCTGATTTTAAG 57.363 43.478 0.00 0.00 0.00 1.85
77 78 6.596869 AATCATCTCCCCCTCTGATTTTAA 57.403 37.500 0.00 0.00 35.38 1.52
78 79 7.705912 TTAATCATCTCCCCCTCTGATTTTA 57.294 36.000 2.37 0.00 38.77 1.52
79 80 6.596869 TTAATCATCTCCCCCTCTGATTTT 57.403 37.500 2.37 0.00 38.77 1.82
80 81 6.596869 TTTAATCATCTCCCCCTCTGATTT 57.403 37.500 2.37 0.00 38.77 2.17
81 82 6.793518 ATTTAATCATCTCCCCCTCTGATT 57.206 37.500 0.00 0.00 40.44 2.57
82 83 6.793518 AATTTAATCATCTCCCCCTCTGAT 57.206 37.500 0.00 0.00 0.00 2.90
83 84 7.705912 TTAATTTAATCATCTCCCCCTCTGA 57.294 36.000 0.00 0.00 0.00 3.27
84 85 8.766994 TTTTAATTTAATCATCTCCCCCTCTG 57.233 34.615 0.00 0.00 0.00 3.35
85 86 9.426534 CTTTTTAATTTAATCATCTCCCCCTCT 57.573 33.333 0.00 0.00 0.00 3.69
86 87 9.201989 ACTTTTTAATTTAATCATCTCCCCCTC 57.798 33.333 0.00 0.00 0.00 4.30
102 103 9.687210 GATCCGACCTGTTTTTACTTTTTAATT 57.313 29.630 0.00 0.00 0.00 1.40
103 104 8.301720 GGATCCGACCTGTTTTTACTTTTTAAT 58.698 33.333 0.00 0.00 0.00 1.40
104 105 7.255555 GGGATCCGACCTGTTTTTACTTTTTAA 60.256 37.037 5.45 0.00 0.00 1.52
105 106 6.207221 GGGATCCGACCTGTTTTTACTTTTTA 59.793 38.462 5.45 0.00 0.00 1.52
106 107 5.010314 GGGATCCGACCTGTTTTTACTTTTT 59.990 40.000 5.45 0.00 0.00 1.94
107 108 4.521639 GGGATCCGACCTGTTTTTACTTTT 59.478 41.667 5.45 0.00 0.00 2.27
108 109 4.077108 GGGATCCGACCTGTTTTTACTTT 58.923 43.478 5.45 0.00 0.00 2.66
109 110 3.329814 AGGGATCCGACCTGTTTTTACTT 59.670 43.478 5.45 0.00 36.85 2.24
110 111 2.910977 AGGGATCCGACCTGTTTTTACT 59.089 45.455 5.45 0.00 36.85 2.24
111 112 3.055312 AGAGGGATCCGACCTGTTTTTAC 60.055 47.826 5.45 0.00 38.79 2.01
112 113 3.178865 AGAGGGATCCGACCTGTTTTTA 58.821 45.455 5.45 0.00 38.79 1.52
113 114 1.985895 AGAGGGATCCGACCTGTTTTT 59.014 47.619 5.45 0.00 38.79 1.94
114 115 1.555533 GAGAGGGATCCGACCTGTTTT 59.444 52.381 5.45 0.00 38.79 2.43
115 116 1.196012 GAGAGGGATCCGACCTGTTT 58.804 55.000 5.45 0.00 38.79 2.83
116 117 0.688087 GGAGAGGGATCCGACCTGTT 60.688 60.000 5.45 0.00 38.79 3.16
117 118 1.075896 GGAGAGGGATCCGACCTGT 60.076 63.158 5.45 0.00 38.79 4.00
118 119 1.075970 TGGAGAGGGATCCGACCTG 60.076 63.158 5.45 0.00 42.77 4.00
119 120 1.231641 CTGGAGAGGGATCCGACCT 59.768 63.158 5.45 2.06 42.77 3.85
120 121 2.503382 GCTGGAGAGGGATCCGACC 61.503 68.421 5.45 6.90 42.77 4.79
121 122 2.503382 GGCTGGAGAGGGATCCGAC 61.503 68.421 5.45 1.97 42.77 4.79
122 123 2.123251 GGCTGGAGAGGGATCCGA 60.123 66.667 5.45 0.00 42.77 4.55
123 124 2.444706 TGGCTGGAGAGGGATCCG 60.445 66.667 5.45 0.00 42.77 4.18
124 125 1.690633 TGTGGCTGGAGAGGGATCC 60.691 63.158 1.92 1.92 40.03 3.36
125 126 1.267574 TGTGTGGCTGGAGAGGGATC 61.268 60.000 0.00 0.00 0.00 3.36
126 127 1.229625 TGTGTGGCTGGAGAGGGAT 60.230 57.895 0.00 0.00 0.00 3.85
127 128 1.915266 CTGTGTGGCTGGAGAGGGA 60.915 63.158 0.00 0.00 0.00 4.20
128 129 2.667418 CTGTGTGGCTGGAGAGGG 59.333 66.667 0.00 0.00 0.00 4.30
129 130 2.046507 GCTGTGTGGCTGGAGAGG 60.047 66.667 0.00 0.00 0.00 3.69
130 131 2.433838 CGCTGTGTGGCTGGAGAG 60.434 66.667 0.00 0.00 0.00 3.20
131 132 4.007644 CCGCTGTGTGGCTGGAGA 62.008 66.667 0.00 0.00 0.00 3.71
132 133 4.320456 ACCGCTGTGTGGCTGGAG 62.320 66.667 0.00 0.00 36.54 3.86
133 134 4.314440 GACCGCTGTGTGGCTGGA 62.314 66.667 0.00 0.00 36.54 3.86
134 135 4.320456 AGACCGCTGTGTGGCTGG 62.320 66.667 0.00 0.00 36.54 4.85
135 136 2.740055 GAGACCGCTGTGTGGCTG 60.740 66.667 0.00 0.00 36.54 4.85
136 137 2.919856 AGAGACCGCTGTGTGGCT 60.920 61.111 0.00 0.00 36.54 4.75
137 138 2.433318 GAGAGACCGCTGTGTGGC 60.433 66.667 0.00 0.00 36.54 5.01
138 139 1.214062 GAGAGAGACCGCTGTGTGG 59.786 63.158 0.00 0.00 39.41 4.17
139 140 0.529833 ATGAGAGAGACCGCTGTGTG 59.470 55.000 0.00 0.00 0.00 3.82
220 221 5.299279 ACACACAAGTAAATTCCACCTCTTG 59.701 40.000 0.00 0.00 38.40 3.02
222 223 5.048846 ACACACAAGTAAATTCCACCTCT 57.951 39.130 0.00 0.00 0.00 3.69
302 303 3.752747 TCACCTGCATGTGACATTTACTG 59.247 43.478 19.36 0.00 40.22 2.74
384 385 2.172679 GACTTTTCCTCCTCCTCTCGT 58.827 52.381 0.00 0.00 0.00 4.18
394 395 2.951229 TTCTGGTGGGACTTTTCCTC 57.049 50.000 0.00 0.00 42.38 3.71
494 513 1.527380 GGCGTTGGAGTTGGTTCCA 60.527 57.895 0.00 0.00 45.34 3.53
496 515 0.030235 GTTGGCGTTGGAGTTGGTTC 59.970 55.000 0.00 0.00 0.00 3.62
497 516 1.720694 CGTTGGCGTTGGAGTTGGTT 61.721 55.000 0.00 0.00 0.00 3.67
531 574 4.824515 AGGAGAGGGAGGCGACGG 62.825 72.222 0.00 0.00 0.00 4.79
842 938 0.043485 GGTCCTCCTTCCTCCTCCTT 59.957 60.000 0.00 0.00 0.00 3.36
847 943 3.839432 CGCGGTCCTCCTTCCTCC 61.839 72.222 0.00 0.00 0.00 4.30
1026 1122 1.130561 GACGGAAGCGGAAATTGAAGG 59.869 52.381 0.00 0.00 0.00 3.46
1029 1125 1.632046 GCGACGGAAGCGGAAATTGA 61.632 55.000 0.00 0.00 0.00 2.57
1030 1126 1.226018 GCGACGGAAGCGGAAATTG 60.226 57.895 0.00 0.00 0.00 2.32
1105 1207 1.910819 GCCACGAACACGCATTAATTG 59.089 47.619 0.00 0.00 0.00 2.32
1125 1227 0.246635 AGGAATCGAACAGTGACCGG 59.753 55.000 0.00 0.00 0.00 5.28
1130 1232 2.757868 AGGAGAGAGGAATCGAACAGTG 59.242 50.000 0.00 0.00 0.00 3.66
1150 1252 5.638783 CGGTAATTCGAATACTAGGCCTAG 58.361 45.833 33.98 33.98 39.04 3.02
1237 1341 0.532115 ACAATTCTCCCAATTGGCGC 59.468 50.000 19.75 0.00 40.84 6.53
1255 1359 2.285428 GGATTCGTGCGTAATTCGGAAC 60.285 50.000 0.00 0.00 42.24 3.62
1259 1363 0.381428 GCGGATTCGTGCGTAATTCG 60.381 55.000 0.00 10.67 38.18 3.34
1366 1470 7.678837 TCCAAAAACAAAGAGATGGCATAAAT 58.321 30.769 0.00 0.00 0.00 1.40
1406 1511 2.414481 GCTCATGCGGTGATGATGATAC 59.586 50.000 0.00 0.00 35.97 2.24
1407 1512 2.301009 AGCTCATGCGGTGATGATGATA 59.699 45.455 0.00 0.00 45.42 2.15
1408 1513 1.071857 AGCTCATGCGGTGATGATGAT 59.928 47.619 0.00 0.00 45.42 2.45
1449 1554 2.898920 ATCCTAACGGGCGAGGACGA 62.899 60.000 0.00 0.00 44.64 4.20
1451 1556 1.000496 CTAATCCTAACGGGCGAGGAC 60.000 57.143 0.00 0.00 44.64 3.85
1452 1557 1.325355 CTAATCCTAACGGGCGAGGA 58.675 55.000 0.00 0.00 45.88 3.71
1453 1558 1.038280 ACTAATCCTAACGGGCGAGG 58.962 55.000 0.00 0.00 34.39 4.63
1455 1560 2.936202 ACTACTAATCCTAACGGGCGA 58.064 47.619 0.00 0.00 34.39 5.54
1456 1561 4.067896 TCTACTACTAATCCTAACGGGCG 58.932 47.826 0.00 0.00 34.39 6.13
1457 1562 7.108847 TCTATCTACTACTAATCCTAACGGGC 58.891 42.308 0.00 0.00 34.39 6.13
1475 1580 3.139077 TCTCACGCAGCGAATCTATCTA 58.861 45.455 24.65 0.00 0.00 1.98
1476 1581 1.950216 TCTCACGCAGCGAATCTATCT 59.050 47.619 24.65 0.00 0.00 1.98
1477 1582 2.407521 TCTCACGCAGCGAATCTATC 57.592 50.000 24.65 0.00 0.00 2.08
1478 1583 2.099921 ACTTCTCACGCAGCGAATCTAT 59.900 45.455 24.65 0.00 0.00 1.98
1479 1584 1.472878 ACTTCTCACGCAGCGAATCTA 59.527 47.619 24.65 2.58 0.00 1.98
1480 1585 0.244994 ACTTCTCACGCAGCGAATCT 59.755 50.000 24.65 0.00 0.00 2.40
1481 1586 0.642800 GACTTCTCACGCAGCGAATC 59.357 55.000 24.65 3.99 0.00 2.52
1482 1587 0.038251 TGACTTCTCACGCAGCGAAT 60.038 50.000 24.65 0.00 0.00 3.34
1483 1588 0.249280 TTGACTTCTCACGCAGCGAA 60.249 50.000 24.65 8.21 0.00 4.70
1484 1589 0.249280 TTTGACTTCTCACGCAGCGA 60.249 50.000 24.65 0.00 0.00 4.93
1542 1650 1.550327 CCAAAGGAGAGGGGAAAAGC 58.450 55.000 0.00 0.00 0.00 3.51
1595 1705 7.040494 GCCTAAACTTAACTTGGGAGTACTAG 58.960 42.308 0.00 0.00 34.21 2.57
1603 1713 3.756963 GGACAGCCTAAACTTAACTTGGG 59.243 47.826 0.00 0.00 0.00 4.12
1762 1872 5.262009 AGAGGAAAAGGGGTACTAATTTGC 58.738 41.667 0.00 0.00 0.00 3.68
1776 1886 2.744741 GGCGAGAAAGGAAGAGGAAAAG 59.255 50.000 0.00 0.00 0.00 2.27
1794 1904 1.732259 ACTGTAGAAAAATCAGCGGCG 59.268 47.619 0.51 0.51 33.12 6.46
1795 1905 4.786609 GCATACTGTAGAAAAATCAGCGGC 60.787 45.833 0.00 0.00 33.12 6.53
1893 2003 9.857957 AAGAATAACGGTCTCTTTAGTAAGAAG 57.142 33.333 0.00 0.00 39.80 2.85
1900 2010 8.475331 TGCTTTAAGAATAACGGTCTCTTTAG 57.525 34.615 3.29 3.81 31.91 1.85
1940 2050 4.450976 TGTATCTCGTGGCAGCAATTTAT 58.549 39.130 0.00 0.00 0.00 1.40
1941 2051 3.867857 TGTATCTCGTGGCAGCAATTTA 58.132 40.909 0.00 0.00 0.00 1.40
1942 2052 2.679837 CTGTATCTCGTGGCAGCAATTT 59.320 45.455 0.00 0.00 0.00 1.82
1976 2086 5.555017 AGCCGTTCTATATTCGAGGTACTA 58.445 41.667 0.00 0.00 41.55 1.82
1977 2087 5.745476 AGAGCCGTTCTATATTCGAGGTACT 60.745 44.000 0.00 0.00 35.92 2.73
1978 2088 4.455190 AGAGCCGTTCTATATTCGAGGTAC 59.545 45.833 0.00 0.00 33.23 3.34
2304 2416 1.153289 CCCATTCCTGACCTCTGCG 60.153 63.158 0.00 0.00 0.00 5.18
2331 2443 4.735369 TCTCAAGTCTCCTCTTCTTCAGT 58.265 43.478 0.00 0.00 0.00 3.41
2421 2533 2.125753 GCAGGAGTCCGCAGTGAG 60.126 66.667 17.55 0.00 0.00 3.51
2469 2581 2.354003 GCTAGGTAAACCCGCAGTAACA 60.354 50.000 6.24 0.00 38.74 2.41
2652 2764 3.075884 TGTACCGTATTTTGAAGCCACC 58.924 45.455 0.00 0.00 0.00 4.61
2680 2792 5.843019 AGAGAAATGGGTCTGAGGTAAAA 57.157 39.130 0.00 0.00 0.00 1.52
2690 2802 2.827921 ACATTGGCAAGAGAAATGGGTC 59.172 45.455 5.96 0.00 35.95 4.46
2699 2811 5.277974 CCATTCGGTAATACATTGGCAAGAG 60.278 44.000 5.96 3.36 0.00 2.85
2740 2852 2.686118 GCCTGGAGAGAAAGATGCCATT 60.686 50.000 0.00 0.00 0.00 3.16
2744 2856 2.345124 ATGCCTGGAGAGAAAGATGC 57.655 50.000 0.00 0.00 0.00 3.91
2773 2885 3.788766 GCGCTTACAGGTGCCACG 61.789 66.667 0.00 0.00 36.81 4.94
2779 2891 0.951040 GCACAGAAGCGCTTACAGGT 60.951 55.000 25.11 15.47 0.00 4.00
2800 2912 2.433145 ATCAGCACGACACCAGCG 60.433 61.111 0.00 0.00 0.00 5.18
2848 2960 3.121030 CGAAGCGGCTGAACCCTG 61.121 66.667 1.81 0.00 33.26 4.45
2851 2963 2.048127 AGACGAAGCGGCTGAACC 60.048 61.111 1.81 0.00 46.62 3.62
2890 3002 7.152645 GTCCACTCATAAAGAAAGTGACTGTA 58.847 38.462 3.42 0.00 42.37 2.74
2893 3005 5.230942 CGTCCACTCATAAAGAAAGTGACT 58.769 41.667 3.42 0.00 42.37 3.41
2920 3032 7.321153 GGTACTGAAATAAACAGAGAGTAGCA 58.679 38.462 0.00 0.00 38.55 3.49
2933 3045 9.181061 GGCAAACTAAATAGGGTACTGAAATAA 57.819 33.333 0.00 0.00 0.00 1.40
2963 3076 6.260936 AGTCGTGAAAAATGTGATGAGACTTT 59.739 34.615 0.00 0.00 32.12 2.66
3094 3207 3.124297 CAGAAGAGATTTCACGCCAGAAC 59.876 47.826 0.00 0.00 0.00 3.01
3221 3334 0.944999 AAGGGAGAGAGGGGAGCATA 59.055 55.000 0.00 0.00 0.00 3.14
3222 3335 0.045469 AAAGGGAGAGAGGGGAGCAT 59.955 55.000 0.00 0.00 0.00 3.79
3224 3337 0.326143 AGAAAGGGAGAGAGGGGAGC 60.326 60.000 0.00 0.00 0.00 4.70
3225 3338 1.691163 GGAGAAAGGGAGAGAGGGGAG 60.691 61.905 0.00 0.00 0.00 4.30
3227 3340 0.692756 GGGAGAAAGGGAGAGAGGGG 60.693 65.000 0.00 0.00 0.00 4.79
3229 3342 1.273552 ACAGGGAGAAAGGGAGAGAGG 60.274 57.143 0.00 0.00 0.00 3.69
3279 3402 9.322773 CTACAAGCATAGAGAAGAAAATCATGA 57.677 33.333 0.00 0.00 0.00 3.07
3280 3403 9.322773 TCTACAAGCATAGAGAAGAAAATCATG 57.677 33.333 0.00 0.00 0.00 3.07
3281 3404 9.896645 TTCTACAAGCATAGAGAAGAAAATCAT 57.103 29.630 0.00 0.00 32.78 2.45
3296 3419 4.218417 AGCCGTGAAAAATTCTACAAGCAT 59.782 37.500 0.00 0.00 0.00 3.79
3452 3575 6.299141 ACCGATATAAAGCATTGGATCTGTT 58.701 36.000 0.00 0.00 32.07 3.16
3689 3812 1.000896 ACATACTGGCTTGCCACCC 60.001 57.895 10.65 0.00 0.00 4.61
3747 3870 4.985538 TCCCTAACAGAACATCAAAAGCT 58.014 39.130 0.00 0.00 0.00 3.74
4102 4228 0.877071 ACAGAAGCATTGCAGAACGG 59.123 50.000 11.91 2.76 0.00 4.44
4439 4565 7.173907 CAGTTCTTGTTCTGTACTCCAATCAAT 59.826 37.037 0.00 0.00 0.00 2.57
4591 4717 4.875536 TCAGAAATCGCAGCTTGCTTATAA 59.124 37.500 6.58 0.00 42.25 0.98
4635 4761 1.408822 CCTGGTTAGCCCCAACTGATC 60.409 57.143 0.00 0.00 33.07 2.92
4646 4772 1.740025 GTTGCTGATGTCCTGGTTAGC 59.260 52.381 0.00 0.00 0.00 3.09
4660 4786 2.855963 CAAGTTTGCTTCACTGTTGCTG 59.144 45.455 0.00 0.00 31.49 4.41
4712 4838 1.402852 CGATGAAGTCGCAGGAGAACA 60.403 52.381 0.00 0.00 44.33 3.18
4763 4889 0.396974 ACCTTTGGTTCTGCAGGCAA 60.397 50.000 15.13 0.00 27.29 4.52
4842 4968 9.202273 GCATGGAACTGAAAAACAACAATATTA 57.798 29.630 0.00 0.00 0.00 0.98
4843 4969 7.714377 TGCATGGAACTGAAAAACAACAATATT 59.286 29.630 0.00 0.00 0.00 1.28
4861 4987 1.881973 GTCAGTTTGAGCTGCATGGAA 59.118 47.619 1.02 0.00 36.49 3.53
4891 5017 9.906660 TGTTTTTATGAACTGCTTAGTAATTGG 57.093 29.630 0.00 0.00 0.00 3.16
4932 5058 1.745232 TGCCATACAACGGACCATTC 58.255 50.000 0.00 0.00 0.00 2.67
4940 5066 3.793129 GCAGGATGAATTGCCATACAACG 60.793 47.826 0.00 0.00 39.14 4.10
4942 5068 3.363627 TGCAGGATGAATTGCCATACAA 58.636 40.909 0.00 0.00 40.40 2.41
4945 5071 2.894765 CCATGCAGGATGAATTGCCATA 59.105 45.455 0.00 0.00 39.69 2.74
5038 5164 3.058914 CGCTTGACTCGGAAAATTTCAGT 60.059 43.478 8.09 3.38 0.00 3.41
5046 5172 1.667830 CCTGCGCTTGACTCGGAAA 60.668 57.895 9.73 0.00 0.00 3.13
5064 5190 4.934602 GCAGATCTTCCTAATATGCTGGAC 59.065 45.833 0.00 0.00 38.12 4.02
5191 5319 1.204704 CTACAGGGTCAGATGCGTGAA 59.795 52.381 0.00 0.00 0.00 3.18
5194 5322 1.517832 GCTACAGGGTCAGATGCGT 59.482 57.895 0.00 0.00 0.00 5.24
5242 5370 0.250467 GAAGCAGCAGTTCACCAGGA 60.250 55.000 0.00 0.00 0.00 3.86
5289 5417 4.682778 ATGATACACGCCTAAGCCTAAA 57.317 40.909 0.00 0.00 34.57 1.85
5333 5461 7.259290 TCTCAGTTGTTTCTCAATTACCAAC 57.741 36.000 0.00 0.00 38.38 3.77
5348 5476 4.647564 AACTCCATGGATTCTCAGTTGT 57.352 40.909 16.63 3.03 0.00 3.32
5386 5514 6.956299 AATATCAGAAACAAAACATGCAGC 57.044 33.333 0.00 0.00 0.00 5.25
5503 5631 1.546476 CTGAGGGAACTGAAGTACGCT 59.454 52.381 0.00 0.00 44.43 5.07
5636 5764 1.520564 CTGCGCCGCATAACTGGTA 60.521 57.895 14.15 0.00 38.13 3.25
5648 5776 3.121030 ACATTCGACTGCTGCGCC 61.121 61.111 4.18 0.00 0.00 6.53
5692 5862 3.741476 CCTCCGCAAACTGCTGCC 61.741 66.667 0.00 0.00 42.25 4.85
5775 5945 2.651361 CTCGACCAGCCTGTTCGT 59.349 61.111 11.50 0.00 0.00 3.85
5926 6105 3.938963 CCCTCGTGTAGTTAACAATGCAT 59.061 43.478 8.61 0.00 40.63 3.96
6068 6255 3.806625 TCTAATAACCGTGTGCCTACC 57.193 47.619 0.00 0.00 0.00 3.18
6106 6296 3.128349 TGAAGCCTCTAAACAACGTGAC 58.872 45.455 0.00 0.00 0.00 3.67
6127 6317 0.390866 CAGCAAGCGGTGACTCAGAT 60.391 55.000 0.00 0.00 43.56 2.90
6150 6340 2.791170 GCAGGAGGCATCAAAGAGG 58.209 57.895 0.00 0.00 43.97 3.69
6164 6354 3.803082 CGTCACGGGCAATGCAGG 61.803 66.667 7.79 0.00 0.00 4.85
6165 6355 3.803082 CCGTCACGGGCAATGCAG 61.803 66.667 8.94 2.67 44.15 4.41
6253 6445 0.536233 TAGCGCTGCCCTTGTTTTCA 60.536 50.000 22.90 0.00 0.00 2.69
6254 6446 0.169009 CTAGCGCTGCCCTTGTTTTC 59.831 55.000 22.90 0.00 0.00 2.29
6277 6469 5.275788 GCGTACGAAAGAATACAGTTAGCAG 60.276 44.000 21.65 0.00 0.00 4.24
6320 6512 9.571810 CAACATCCGAAAAGAATGATTGAATAA 57.428 29.630 0.00 0.00 0.00 1.40
6418 6618 5.015515 TGCATTTCACATGAAGATGGGTTA 58.984 37.500 0.00 0.00 34.24 2.85
6421 6621 4.368315 CATGCATTTCACATGAAGATGGG 58.632 43.478 0.00 0.00 46.33 4.00
6426 6626 2.871133 ACGCATGCATTTCACATGAAG 58.129 42.857 19.57 0.00 46.33 3.02
6442 6642 0.607762 TAGGCCTCAATTGCAACGCA 60.608 50.000 9.68 0.00 36.47 5.24
6448 6648 2.355010 ACTCCATAGGCCTCAATTGC 57.645 50.000 9.68 0.00 0.00 3.56
6480 6680 6.160684 TCTAGTGCTTCGCTGTGTAAATTTA 58.839 36.000 0.00 0.00 0.00 1.40
6502 6702 4.778534 TGCTTACGCTGTAGTACTTTCT 57.221 40.909 0.00 0.00 36.97 2.52
6535 6735 1.384191 GGGGCTGTTGGAGATGGTT 59.616 57.895 0.00 0.00 0.00 3.67
6537 6737 0.846015 TATGGGGCTGTTGGAGATGG 59.154 55.000 0.00 0.00 0.00 3.51
6555 6755 0.391528 GCGGTAAAAAGGACGCCCTA 60.392 55.000 0.00 0.00 43.48 3.53
6560 6760 1.356527 CTCCGGCGGTAAAAAGGACG 61.357 60.000 27.32 0.00 0.00 4.79
6561 6761 1.642037 GCTCCGGCGGTAAAAAGGAC 61.642 60.000 27.32 0.00 0.00 3.85
6562 6762 1.376295 GCTCCGGCGGTAAAAAGGA 60.376 57.895 27.32 2.13 0.00 3.36
6563 6763 1.644786 CTGCTCCGGCGGTAAAAAGG 61.645 60.000 27.32 9.32 42.25 3.11
6564 6764 0.672401 TCTGCTCCGGCGGTAAAAAG 60.672 55.000 27.32 16.56 44.62 2.27
6565 6765 0.250381 TTCTGCTCCGGCGGTAAAAA 60.250 50.000 27.32 12.14 44.62 1.94
6566 6766 0.250381 TTTCTGCTCCGGCGGTAAAA 60.250 50.000 27.32 16.06 44.62 1.52
6567 6767 0.250381 TTTTCTGCTCCGGCGGTAAA 60.250 50.000 27.32 15.74 44.62 2.01
6568 6768 0.250381 TTTTTCTGCTCCGGCGGTAA 60.250 50.000 27.32 11.67 44.62 2.85
6569 6769 1.371932 TTTTTCTGCTCCGGCGGTA 59.628 52.632 27.32 11.85 44.62 4.02
6570 6770 2.112297 TTTTTCTGCTCCGGCGGT 59.888 55.556 27.32 0.00 44.62 5.68
6604 6804 2.412847 CGGCGAAAAACAAGGATCTGAC 60.413 50.000 0.00 0.00 0.00 3.51
6605 6805 1.804151 CGGCGAAAAACAAGGATCTGA 59.196 47.619 0.00 0.00 0.00 3.27
6608 6808 2.699251 AACGGCGAAAAACAAGGATC 57.301 45.000 16.62 0.00 0.00 3.36
6622 6822 3.376540 TGTAATTTCAGCACAAAACGGC 58.623 40.909 0.00 0.00 0.00 5.68
6623 6823 4.208253 GGTTGTAATTTCAGCACAAAACGG 59.792 41.667 1.66 0.00 34.20 4.44
6626 6826 4.363999 CCGGTTGTAATTTCAGCACAAAA 58.636 39.130 0.00 0.00 34.20 2.44
6631 6831 0.519519 CGCCGGTTGTAATTTCAGCA 59.480 50.000 1.90 0.00 0.00 4.41
6680 6880 0.672401 CCTTTTCGCTTCAGCCGGTA 60.672 55.000 1.90 0.00 37.91 4.02
6711 6922 0.535335 ATTGGTGTCGCCGATAGTGT 59.465 50.000 3.06 0.00 39.60 3.55
6715 6926 0.671796 ATCGATTGGTGTCGCCGATA 59.328 50.000 5.06 0.00 41.45 2.92
6716 6927 0.179084 AATCGATTGGTGTCGCCGAT 60.179 50.000 10.50 4.71 44.07 4.18
6729 6940 1.131693 GAAAACGGCGGGAAAATCGAT 59.868 47.619 13.24 0.00 0.00 3.59
6730 6941 0.518195 GAAAACGGCGGGAAAATCGA 59.482 50.000 13.24 0.00 0.00 3.59
6738 6949 2.599281 AAAGGGGAAAACGGCGGG 60.599 61.111 13.24 0.00 0.00 6.13
6739 6950 2.632544 GGAAAGGGGAAAACGGCGG 61.633 63.158 13.24 0.00 0.00 6.13
6740 6951 2.632544 GGGAAAGGGGAAAACGGCG 61.633 63.158 4.80 4.80 0.00 6.46
6741 6952 1.228769 AGGGAAAGGGGAAAACGGC 60.229 57.895 0.00 0.00 0.00 5.68
6742 6953 0.611062 GGAGGGAAAGGGGAAAACGG 60.611 60.000 0.00 0.00 0.00 4.44
6743 6954 0.111639 TGGAGGGAAAGGGGAAAACG 59.888 55.000 0.00 0.00 0.00 3.60
6744 6955 2.623418 ATGGAGGGAAAGGGGAAAAC 57.377 50.000 0.00 0.00 0.00 2.43
6745 6956 3.646867 AAATGGAGGGAAAGGGGAAAA 57.353 42.857 0.00 0.00 0.00 2.29
6746 6957 3.646867 AAAATGGAGGGAAAGGGGAAA 57.353 42.857 0.00 0.00 0.00 3.13
6747 6958 3.516586 GAAAAATGGAGGGAAAGGGGAA 58.483 45.455 0.00 0.00 0.00 3.97
6748 6959 2.225522 GGAAAAATGGAGGGAAAGGGGA 60.226 50.000 0.00 0.00 0.00 4.81
6767 6978 3.286725 AAGGGGGTCGGTAGGGGA 61.287 66.667 0.00 0.00 0.00 4.81
6798 7009 0.755686 GATCTGGAGAGAATGGCGGT 59.244 55.000 0.00 0.00 0.00 5.68
6805 7016 2.127869 CGGGCGGATCTGGAGAGAA 61.128 63.158 3.14 0.00 0.00 2.87
6829 7040 1.278238 GGTGCATACTTCTTCGACGG 58.722 55.000 0.00 0.00 0.00 4.79
6832 7043 0.539986 GGGGGTGCATACTTCTTCGA 59.460 55.000 0.00 0.00 0.00 3.71
6839 7050 2.599139 TAGGCGAGGGGGTGCATACT 62.599 60.000 0.00 0.00 0.00 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.