Multiple sequence alignment - TraesCS1A01G195100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G195100 chr1A 100.000 3890 0 0 1753 5642 352140066 352136177 0.000000e+00 7184.0
1 TraesCS1A01G195100 chr1A 100.000 1364 0 0 1 1364 352141818 352140455 0.000000e+00 2519.0
2 TraesCS1A01G195100 chr1A 97.006 334 10 0 390 723 352172666 352172333 3.820000e-156 562.0
3 TraesCS1A01G195100 chr1A 87.500 256 30 2 3425 3679 145919523 145919269 1.540000e-75 294.0
4 TraesCS1A01G195100 chr1D 93.698 1698 56 21 1754 3438 280224245 280222586 0.000000e+00 2495.0
5 TraesCS1A01G195100 chr1D 86.119 1765 140 51 3917 5641 280222440 280220741 0.000000e+00 1805.0
6 TraesCS1A01G195100 chr1D 92.880 618 24 6 754 1361 280224922 280224315 0.000000e+00 880.0
7 TraesCS1A01G195100 chr1D 79.167 600 101 21 1 589 154027007 154027593 1.470000e-105 394.0
8 TraesCS1A01G195100 chr1D 90.909 154 9 3 3674 3825 280222587 280222437 9.580000e-48 202.0
9 TraesCS1A01G195100 chr1B 95.034 1470 59 8 1976 3438 380885900 380884438 0.000000e+00 2298.0
10 TraesCS1A01G195100 chr1B 93.311 912 41 12 3952 4858 380884176 380883280 0.000000e+00 1328.0
11 TraesCS1A01G195100 chr1B 91.040 625 23 13 754 1361 380886774 380886166 0.000000e+00 813.0
12 TraesCS1A01G195100 chr1B 93.069 202 4 5 1753 1945 380886103 380885903 2.570000e-73 287.0
13 TraesCS1A01G195100 chr1B 95.395 152 5 2 3674 3825 380884439 380884290 2.030000e-59 241.0
14 TraesCS1A01G195100 chr6A 89.373 734 55 11 1 722 235031351 235030629 0.000000e+00 902.0
15 TraesCS1A01G195100 chr6A 77.905 525 99 12 1 521 106744104 106743593 1.530000e-80 311.0
16 TraesCS1A01G195100 chr6A 90.385 104 9 1 3824 3927 596589445 596589343 9.860000e-28 135.0
17 TraesCS1A01G195100 chr4A 88.219 730 69 11 1 722 410723136 410722416 0.000000e+00 856.0
18 TraesCS1A01G195100 chr3B 87.585 733 68 15 1 722 260346374 260347094 0.000000e+00 828.0
19 TraesCS1A01G195100 chr3B 85.143 350 30 13 389 727 260341691 260342029 7.000000e-89 339.0
20 TraesCS1A01G195100 chr6D 83.718 737 97 16 1 725 108783878 108783153 0.000000e+00 675.0
21 TraesCS1A01G195100 chr6D 81.792 346 40 15 390 723 108798115 108797781 9.320000e-68 268.0
22 TraesCS1A01G195100 chr6D 74.085 683 131 34 61 722 113897965 113898622 7.310000e-59 239.0
23 TraesCS1A01G195100 chr6D 89.899 99 10 0 3822 3920 345760464 345760562 1.650000e-25 128.0
24 TraesCS1A01G195100 chr4D 91.632 239 20 0 3437 3675 461492286 461492048 1.170000e-86 331.0
25 TraesCS1A01G195100 chr4D 90.417 240 21 2 3437 3675 76023283 76023521 1.180000e-81 315.0
26 TraesCS1A01G195100 chr4D 88.934 244 24 2 3435 3676 435664449 435664207 1.190000e-76 298.0
27 TraesCS1A01G195100 chr4D 87.755 245 28 2 3437 3680 259157955 259157712 9.250000e-73 285.0
28 TraesCS1A01G195100 chr7D 90.000 250 23 2 3428 3676 614375895 614376143 7.050000e-84 322.0
29 TraesCS1A01G195100 chr5D 91.102 236 20 1 3436 3670 525668106 525667871 9.120000e-83 318.0
30 TraesCS1A01G195100 chr5D 96.774 31 1 0 5156 5186 439714079 439714049 1.000000e-02 52.8
31 TraesCS1A01G195100 chr2D 89.113 248 26 1 3430 3676 589493906 589494153 1.970000e-79 307.0
32 TraesCS1A01G195100 chr3D 88.211 246 28 1 3437 3682 54369198 54368954 5.530000e-75 292.0
33 TraesCS1A01G195100 chr7A 73.741 735 134 49 1 710 657087719 657088419 3.400000e-57 233.0
34 TraesCS1A01G195100 chr7A 89.189 148 5 7 561 703 657083210 657083351 2.090000e-39 174.0
35 TraesCS1A01G195100 chr7A 90.816 98 9 0 3824 3921 138008459 138008556 1.280000e-26 132.0
36 TraesCS1A01G195100 chr5A 87.500 168 10 7 561 723 7434942 7435103 3.470000e-42 183.0
37 TraesCS1A01G195100 chr4B 89.524 105 10 1 3821 3925 315720347 315720450 1.280000e-26 132.0
38 TraesCS1A01G195100 chrUn 88.571 105 11 1 3821 3925 314370672 314370569 5.930000e-25 126.0
39 TraesCS1A01G195100 chrUn 89.109 101 11 0 3820 3920 362465799 362465899 5.930000e-25 126.0
40 TraesCS1A01G195100 chr5B 88.462 104 12 0 3817 3920 180913306 180913409 5.930000e-25 126.0
41 TraesCS1A01G195100 chr7B 87.619 105 12 1 3820 3924 503865963 503865860 2.760000e-23 121.0
42 TraesCS1A01G195100 chr3A 86.087 115 13 3 3809 3920 1704386 1704500 2.760000e-23 121.0
43 TraesCS1A01G195100 chr6B 79.167 168 17 14 544 703 454756961 454757118 3.600000e-17 100.0
44 TraesCS1A01G195100 chr2B 79.394 165 16 12 548 703 87702465 87702310 3.600000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G195100 chr1A 352136177 352141818 5641 True 4851.5 7184 100.0000 1 5642 2 chr1A.!!$R3 5641
1 TraesCS1A01G195100 chr1D 280220741 280224922 4181 True 1345.5 2495 90.9015 754 5641 4 chr1D.!!$R1 4887
2 TraesCS1A01G195100 chr1D 154027007 154027593 586 False 394.0 394 79.1670 1 589 1 chr1D.!!$F1 588
3 TraesCS1A01G195100 chr1B 380883280 380886774 3494 True 993.4 2298 93.5698 754 4858 5 chr1B.!!$R1 4104
4 TraesCS1A01G195100 chr6A 235030629 235031351 722 True 902.0 902 89.3730 1 722 1 chr6A.!!$R2 721
5 TraesCS1A01G195100 chr6A 106743593 106744104 511 True 311.0 311 77.9050 1 521 1 chr6A.!!$R1 520
6 TraesCS1A01G195100 chr4A 410722416 410723136 720 True 856.0 856 88.2190 1 722 1 chr4A.!!$R1 721
7 TraesCS1A01G195100 chr3B 260346374 260347094 720 False 828.0 828 87.5850 1 722 1 chr3B.!!$F2 721
8 TraesCS1A01G195100 chr6D 108783153 108783878 725 True 675.0 675 83.7180 1 725 1 chr6D.!!$R1 724
9 TraesCS1A01G195100 chr6D 113897965 113898622 657 False 239.0 239 74.0850 61 722 1 chr6D.!!$F1 661
10 TraesCS1A01G195100 chr7A 657087719 657088419 700 False 233.0 233 73.7410 1 710 1 chr7A.!!$F3 709

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
740 772 0.036388 ATGCGGGAACAATCGTCTGT 60.036 50.0 0.0 0.0 0.0 3.41 F
1919 1976 0.391130 TGTAGCATCACAAGGACCGC 60.391 55.0 0.0 0.0 0.0 5.68 F
3451 3515 0.034380 TGACTACTCCCTCTGTCCGG 60.034 60.0 0.0 0.0 0.0 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2115 2172 0.953727 CTGCAGGCAAGTAAAGTGCA 59.046 50.0 5.57 0.0 44.07 4.57 R
3654 3718 0.039618 ACTACCTCCGTCCGGGTTTA 59.960 55.0 0.00 0.0 37.07 2.01 R
5187 5359 0.394762 TCTCCATGGGTGCATTCAGC 60.395 55.0 13.02 0.0 45.96 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 4.235731 GGCCCGTTTCCGATCATT 57.764 55.556 0.00 0.00 35.63 2.57
67 68 2.223112 CGTTTCCGATCATTGCCAAGAG 60.223 50.000 0.00 0.00 35.63 2.85
166 172 0.179073 GTGCTGCACTCGGGTATGAT 60.179 55.000 24.68 0.00 0.00 2.45
418 429 4.263572 TGACCCACCAAGGCCACG 62.264 66.667 5.01 0.00 35.39 4.94
485 496 4.740822 CCCAGGAAGCCCAACCCG 62.741 72.222 0.00 0.00 33.88 5.28
546 558 1.470632 CGCAGCTACTTGAAGGAGGAG 60.471 57.143 6.55 0.00 0.00 3.69
602 621 3.603671 CGGCGGCTACCTACCTCC 61.604 72.222 7.61 0.00 0.00 4.30
603 622 2.123382 GGCGGCTACCTACCTCCT 60.123 66.667 0.00 0.00 0.00 3.69
604 623 1.761271 GGCGGCTACCTACCTCCTT 60.761 63.158 0.00 0.00 0.00 3.36
605 624 1.740905 GCGGCTACCTACCTCCTTC 59.259 63.158 0.00 0.00 0.00 3.46
606 625 0.756070 GCGGCTACCTACCTCCTTCT 60.756 60.000 0.00 0.00 0.00 2.85
607 626 1.320507 CGGCTACCTACCTCCTTCTC 58.679 60.000 0.00 0.00 0.00 2.87
608 627 1.133730 CGGCTACCTACCTCCTTCTCT 60.134 57.143 0.00 0.00 0.00 3.10
614 637 1.856920 CCTACCTCCTTCTCTCCCTCT 59.143 57.143 0.00 0.00 0.00 3.69
662 692 2.509336 CGCCGCTCCCTTGTACTG 60.509 66.667 0.00 0.00 0.00 2.74
722 754 5.879223 CGATCCCGTACTACTACCTTATCAT 59.121 44.000 0.00 0.00 0.00 2.45
725 757 4.379186 CCCGTACTACTACCTTATCATGCG 60.379 50.000 0.00 0.00 0.00 4.73
726 758 4.379186 CCGTACTACTACCTTATCATGCGG 60.379 50.000 0.00 0.00 0.00 5.69
727 759 4.379186 CGTACTACTACCTTATCATGCGGG 60.379 50.000 0.00 0.00 0.00 6.13
728 760 3.840991 ACTACTACCTTATCATGCGGGA 58.159 45.455 0.00 0.00 0.00 5.14
729 761 4.220724 ACTACTACCTTATCATGCGGGAA 58.779 43.478 0.00 0.00 0.00 3.97
730 762 3.470645 ACTACCTTATCATGCGGGAAC 57.529 47.619 0.00 0.00 0.00 3.62
731 763 2.769663 ACTACCTTATCATGCGGGAACA 59.230 45.455 0.00 0.00 0.00 3.18
732 764 2.799126 ACCTTATCATGCGGGAACAA 57.201 45.000 0.00 0.00 0.00 2.83
733 765 3.297134 ACCTTATCATGCGGGAACAAT 57.703 42.857 0.00 0.00 0.00 2.71
734 766 3.214328 ACCTTATCATGCGGGAACAATC 58.786 45.455 0.00 0.00 0.00 2.67
735 767 2.224079 CCTTATCATGCGGGAACAATCG 59.776 50.000 0.00 0.00 0.00 3.34
736 768 2.613026 TATCATGCGGGAACAATCGT 57.387 45.000 0.00 0.00 0.00 3.73
737 769 1.299541 ATCATGCGGGAACAATCGTC 58.700 50.000 0.00 0.00 0.00 4.20
738 770 0.249120 TCATGCGGGAACAATCGTCT 59.751 50.000 0.00 0.00 0.00 4.18
739 771 0.374758 CATGCGGGAACAATCGTCTG 59.625 55.000 0.00 0.00 0.00 3.51
740 772 0.036388 ATGCGGGAACAATCGTCTGT 60.036 50.000 0.00 0.00 0.00 3.41
741 773 0.948623 TGCGGGAACAATCGTCTGTG 60.949 55.000 0.00 0.00 0.00 3.66
742 774 0.669318 GCGGGAACAATCGTCTGTGA 60.669 55.000 0.00 0.00 0.00 3.58
743 775 1.790755 CGGGAACAATCGTCTGTGAA 58.209 50.000 0.00 0.00 0.00 3.18
744 776 1.726791 CGGGAACAATCGTCTGTGAAG 59.273 52.381 0.00 0.00 0.00 3.02
745 777 1.464997 GGGAACAATCGTCTGTGAAGC 59.535 52.381 0.00 0.00 0.00 3.86
746 778 2.143122 GGAACAATCGTCTGTGAAGCA 58.857 47.619 0.00 0.00 0.00 3.91
747 779 2.548057 GGAACAATCGTCTGTGAAGCAA 59.452 45.455 0.00 0.00 0.00 3.91
748 780 3.189287 GGAACAATCGTCTGTGAAGCAAT 59.811 43.478 0.00 0.00 0.00 3.56
749 781 4.320494 GGAACAATCGTCTGTGAAGCAATT 60.320 41.667 0.00 0.00 0.00 2.32
750 782 4.836125 ACAATCGTCTGTGAAGCAATTT 57.164 36.364 0.00 0.00 0.00 1.82
751 783 5.186996 ACAATCGTCTGTGAAGCAATTTT 57.813 34.783 0.00 0.00 0.00 1.82
752 784 4.977963 ACAATCGTCTGTGAAGCAATTTTG 59.022 37.500 0.00 0.00 0.00 2.44
789 821 5.528690 AGGATAATCAAATGATGACCACACG 59.471 40.000 0.00 0.00 41.93 4.49
796 828 5.121611 TCAAATGATGACCACACGATGTTAC 59.878 40.000 0.00 0.00 31.50 2.50
813 845 8.141909 ACGATGTTACTAATTGCTGCTCTAATA 58.858 33.333 0.00 0.00 0.00 0.98
992 1033 1.054406 TCCATTCCATCCCGAGACCC 61.054 60.000 0.00 0.00 0.00 4.46
1083 1124 2.285144 GGGGACGGGGAAGAAGGA 60.285 66.667 0.00 0.00 0.00 3.36
1093 1134 1.273896 GGGAAGAAGGAGAGGAGGGAA 60.274 57.143 0.00 0.00 0.00 3.97
1195 1236 1.201429 TTCTCCACCCTTCTCAGCCC 61.201 60.000 0.00 0.00 0.00 5.19
1214 1259 1.205893 CCGCCTACTCTTCTTCTTGCT 59.794 52.381 0.00 0.00 0.00 3.91
1215 1260 2.354203 CCGCCTACTCTTCTTCTTGCTT 60.354 50.000 0.00 0.00 0.00 3.91
1239 1284 1.550524 TCCCTGCTACTAACACTGCTG 59.449 52.381 0.00 0.00 0.00 4.41
1241 1286 1.363744 CTGCTACTAACACTGCTGCC 58.636 55.000 0.00 0.00 0.00 4.85
1316 1365 2.162809 TCGTATGCTGCTCGTCTAAACA 59.837 45.455 0.00 0.00 0.00 2.83
1361 1410 3.357823 CGATTTCCGTTTCTTTTCTTGCG 59.642 43.478 0.00 0.00 0.00 4.85
1363 1412 4.561735 TTTCCGTTTCTTTTCTTGCGAT 57.438 36.364 0.00 0.00 0.00 4.58
1809 1862 5.577164 GCAATCCATCTACGCGATACTTTAT 59.423 40.000 15.93 0.00 0.00 1.40
1919 1976 0.391130 TGTAGCATCACAAGGACCGC 60.391 55.000 0.00 0.00 0.00 5.68
1946 2003 7.261325 TCTAGTTTCTGTCAGATATGCTCAAC 58.739 38.462 2.68 3.47 0.00 3.18
1950 2007 5.151297 TCTGTCAGATATGCTCAACAACA 57.849 39.130 0.00 0.00 0.00 3.33
2094 2151 8.836413 CCCGATTTCTTTCTTTGCTATGTTATA 58.164 33.333 0.00 0.00 0.00 0.98
2115 2172 4.618920 ATTGTCCTTGTCTCCTAACGTT 57.381 40.909 5.88 5.88 0.00 3.99
2137 2194 2.605580 GCACTTTACTTGCCTGCAGAAC 60.606 50.000 17.39 7.59 33.58 3.01
2142 2199 2.594303 TTGCCTGCAGAACCACGG 60.594 61.111 17.39 0.00 0.00 4.94
2169 2230 0.248661 CGACTGCCGGATCACTGTAG 60.249 60.000 5.05 0.00 33.91 2.74
2362 2423 4.176752 GAGACCATGGACGGCCCC 62.177 72.222 21.47 0.00 0.00 5.80
2653 2714 1.871418 CATGGGGAGAGTCAGGAGAA 58.129 55.000 0.00 0.00 0.00 2.87
2671 2732 0.324830 AAGAGCTCCGCTACCTTCCT 60.325 55.000 10.93 0.00 39.88 3.36
2739 2800 5.947228 TGGAATGCTCTCTTGTTAAACTG 57.053 39.130 0.00 0.00 0.00 3.16
2743 2804 4.617253 TGCTCTCTTGTTAAACTGGCTA 57.383 40.909 0.00 0.00 0.00 3.93
2747 2808 7.165485 TGCTCTCTTGTTAAACTGGCTAATTA 58.835 34.615 0.00 0.00 0.00 1.40
2749 2810 7.963465 GCTCTCTTGTTAAACTGGCTAATTAAC 59.037 37.037 9.77 9.77 39.06 2.01
2751 2812 7.940137 TCTCTTGTTAAACTGGCTAATTAACCA 59.060 33.333 7.37 7.37 38.26 3.67
2792 2854 4.373527 CTGATCTGCCAAGAATCTGAGAG 58.626 47.826 0.00 0.00 35.59 3.20
2802 2864 6.018016 GCCAAGAATCTGAGAGAGCTTATTTC 60.018 42.308 0.00 0.00 0.00 2.17
2836 2898 9.703892 TTGAACTTTGGTTAATTGTGGATAATG 57.296 29.630 0.00 0.00 35.58 1.90
2930 2994 2.034104 ACACTGCATCCATAGCACAG 57.966 50.000 0.00 0.00 37.02 3.66
2973 3037 1.795768 TTGCTTCTGGTCAACTAGCG 58.204 50.000 0.00 0.00 34.65 4.26
2989 3053 1.890876 AGCGCTGTTAAACATGTGGA 58.109 45.000 10.39 0.00 0.00 4.02
2998 3062 6.144402 GCTGTTAAACATGTGGATTTCAGTTG 59.856 38.462 0.00 0.00 0.00 3.16
3027 3091 3.555518 GTTTTCGTTGCAGAGCTTAAGG 58.444 45.455 4.29 0.00 0.00 2.69
3319 3383 2.014857 GCCGGTCAATTAGAAACTCCC 58.985 52.381 1.90 0.00 0.00 4.30
3325 3389 5.123936 GGTCAATTAGAAACTCCCGCTTAT 58.876 41.667 0.00 0.00 0.00 1.73
3341 3405 4.870426 CCGCTTATGTGAGTAGTTCATGTT 59.130 41.667 0.00 0.00 38.29 2.71
3349 3413 4.752101 GTGAGTAGTTCATGTTGTTCAGCT 59.248 41.667 0.00 0.00 38.29 4.24
3388 3452 2.413765 GCAATGTGCAGTCTGTGATGTC 60.414 50.000 0.93 0.00 44.26 3.06
3443 3507 9.656323 TGTTATCTTTATACATGACTACTCCCT 57.344 33.333 0.00 0.00 0.00 4.20
3446 3510 7.825331 TCTTTATACATGACTACTCCCTCTG 57.175 40.000 0.00 0.00 0.00 3.35
3447 3511 7.355101 TCTTTATACATGACTACTCCCTCTGT 58.645 38.462 0.00 0.00 0.00 3.41
3448 3512 7.502895 TCTTTATACATGACTACTCCCTCTGTC 59.497 40.741 0.00 0.00 0.00 3.51
3449 3513 2.741145 ACATGACTACTCCCTCTGTCC 58.259 52.381 0.00 0.00 0.00 4.02
3450 3514 1.678627 CATGACTACTCCCTCTGTCCG 59.321 57.143 0.00 0.00 0.00 4.79
3451 3515 0.034380 TGACTACTCCCTCTGTCCGG 60.034 60.000 0.00 0.00 0.00 5.14
3452 3516 0.752376 GACTACTCCCTCTGTCCGGG 60.752 65.000 0.00 0.00 43.38 5.73
3453 3517 1.306970 CTACTCCCTCTGTCCGGGT 59.693 63.158 0.00 0.00 42.56 5.28
3454 3518 0.324460 CTACTCCCTCTGTCCGGGTT 60.324 60.000 0.00 0.00 42.56 4.11
3455 3519 0.115745 TACTCCCTCTGTCCGGGTTT 59.884 55.000 0.00 0.00 42.56 3.27
3456 3520 0.115745 ACTCCCTCTGTCCGGGTTTA 59.884 55.000 0.00 0.00 42.56 2.01
3457 3521 1.273666 ACTCCCTCTGTCCGGGTTTAT 60.274 52.381 0.00 0.00 42.56 1.40
3458 3522 1.139058 CTCCCTCTGTCCGGGTTTATG 59.861 57.143 0.00 0.00 42.56 1.90
3459 3523 1.200519 CCCTCTGTCCGGGTTTATGA 58.799 55.000 0.00 0.00 36.91 2.15
3460 3524 1.139058 CCCTCTGTCCGGGTTTATGAG 59.861 57.143 0.00 1.36 36.91 2.90
3461 3525 1.139058 CCTCTGTCCGGGTTTATGAGG 59.861 57.143 0.00 7.01 34.52 3.86
3462 3526 1.831736 CTCTGTCCGGGTTTATGAGGT 59.168 52.381 0.00 0.00 0.00 3.85
3463 3527 1.829222 TCTGTCCGGGTTTATGAGGTC 59.171 52.381 0.00 0.00 0.00 3.85
3464 3528 0.906775 TGTCCGGGTTTATGAGGTCC 59.093 55.000 0.00 0.00 0.00 4.46
3465 3529 0.179702 GTCCGGGTTTATGAGGTCCC 59.820 60.000 0.00 0.00 36.82 4.46
3466 3530 0.984432 TCCGGGTTTATGAGGTCCCC 60.984 60.000 0.00 0.00 36.84 4.81
3467 3531 0.986550 CCGGGTTTATGAGGTCCCCT 60.987 60.000 0.00 0.00 36.84 4.79
3468 3532 0.916809 CGGGTTTATGAGGTCCCCTT 59.083 55.000 0.00 0.00 36.84 3.95
3469 3533 1.283905 CGGGTTTATGAGGTCCCCTTT 59.716 52.381 0.00 0.00 36.84 3.11
3470 3534 2.682858 CGGGTTTATGAGGTCCCCTTTC 60.683 54.545 0.00 0.00 36.84 2.62
3471 3535 2.310647 GGGTTTATGAGGTCCCCTTTCA 59.689 50.000 0.00 0.00 31.76 2.69
3472 3536 3.052869 GGGTTTATGAGGTCCCCTTTCAT 60.053 47.826 0.00 0.00 31.76 2.57
3473 3537 4.572007 GGGTTTATGAGGTCCCCTTTCATT 60.572 45.833 0.00 0.00 31.76 2.57
3474 3538 5.023452 GGTTTATGAGGTCCCCTTTCATTT 58.977 41.667 0.00 0.00 31.76 2.32
3475 3539 5.483937 GGTTTATGAGGTCCCCTTTCATTTT 59.516 40.000 0.00 0.00 31.76 1.82
3476 3540 6.398095 GTTTATGAGGTCCCCTTTCATTTTG 58.602 40.000 0.00 0.00 31.76 2.44
3477 3541 3.893753 TGAGGTCCCCTTTCATTTTGA 57.106 42.857 0.00 0.00 31.76 2.69
3478 3542 3.766545 TGAGGTCCCCTTTCATTTTGAG 58.233 45.455 0.00 0.00 31.76 3.02
3479 3543 2.493675 GAGGTCCCCTTTCATTTTGAGC 59.506 50.000 0.00 0.00 31.76 4.26
3480 3544 1.550524 GGTCCCCTTTCATTTTGAGCC 59.449 52.381 0.00 0.00 0.00 4.70
3481 3545 2.247358 GTCCCCTTTCATTTTGAGCCA 58.753 47.619 0.00 0.00 0.00 4.75
3482 3546 2.632512 GTCCCCTTTCATTTTGAGCCAA 59.367 45.455 0.00 0.00 0.00 4.52
3483 3547 3.070878 GTCCCCTTTCATTTTGAGCCAAA 59.929 43.478 0.00 0.00 0.00 3.28
3484 3548 3.324556 TCCCCTTTCATTTTGAGCCAAAG 59.675 43.478 1.52 0.00 34.72 2.77
3485 3549 3.071457 CCCCTTTCATTTTGAGCCAAAGT 59.929 43.478 1.52 0.00 34.72 2.66
3486 3550 4.444733 CCCCTTTCATTTTGAGCCAAAGTT 60.445 41.667 1.52 0.00 34.72 2.66
3487 3551 5.125356 CCCTTTCATTTTGAGCCAAAGTTT 58.875 37.500 1.52 0.00 34.72 2.66
3488 3552 5.007921 CCCTTTCATTTTGAGCCAAAGTTTG 59.992 40.000 8.73 8.73 34.72 2.93
3489 3553 5.816777 CCTTTCATTTTGAGCCAAAGTTTGA 59.183 36.000 17.33 0.00 34.72 2.69
3490 3554 6.238184 CCTTTCATTTTGAGCCAAAGTTTGAC 60.238 38.462 17.33 5.39 34.72 3.18
3491 3555 4.692228 TCATTTTGAGCCAAAGTTTGACC 58.308 39.130 17.33 7.54 34.72 4.02
3492 3556 4.161189 TCATTTTGAGCCAAAGTTTGACCA 59.839 37.500 17.33 8.50 34.72 4.02
3493 3557 4.751767 TTTTGAGCCAAAGTTTGACCAT 57.248 36.364 17.33 0.00 34.72 3.55
3494 3558 3.731652 TTGAGCCAAAGTTTGACCATG 57.268 42.857 17.33 0.94 0.00 3.66
3495 3559 2.665165 TGAGCCAAAGTTTGACCATGT 58.335 42.857 17.33 0.00 0.00 3.21
3496 3560 3.826524 TGAGCCAAAGTTTGACCATGTA 58.173 40.909 17.33 0.00 0.00 2.29
3497 3561 4.406456 TGAGCCAAAGTTTGACCATGTAT 58.594 39.130 17.33 0.00 0.00 2.29
3498 3562 4.832266 TGAGCCAAAGTTTGACCATGTATT 59.168 37.500 17.33 0.00 0.00 1.89
3499 3563 5.304101 TGAGCCAAAGTTTGACCATGTATTT 59.696 36.000 17.33 0.00 0.00 1.40
3500 3564 6.491745 TGAGCCAAAGTTTGACCATGTATTTA 59.508 34.615 17.33 0.00 0.00 1.40
3501 3565 7.014711 TGAGCCAAAGTTTGACCATGTATTTAA 59.985 33.333 17.33 0.00 0.00 1.52
3502 3566 7.151976 AGCCAAAGTTTGACCATGTATTTAAC 58.848 34.615 17.33 0.00 0.00 2.01
3503 3567 7.015195 AGCCAAAGTTTGACCATGTATTTAACT 59.985 33.333 17.33 0.00 0.00 2.24
3504 3568 7.116233 GCCAAAGTTTGACCATGTATTTAACTG 59.884 37.037 17.33 0.00 0.00 3.16
3505 3569 8.356657 CCAAAGTTTGACCATGTATTTAACTGA 58.643 33.333 17.33 0.00 0.00 3.41
3506 3570 9.912634 CAAAGTTTGACCATGTATTTAACTGAT 57.087 29.630 10.19 0.00 0.00 2.90
3588 3652 8.458573 AATTCAACAATATATTTCGGGTAGCA 57.541 30.769 0.00 0.00 0.00 3.49
3589 3653 8.635765 ATTCAACAATATATTTCGGGTAGCAT 57.364 30.769 0.00 0.00 0.00 3.79
3590 3654 9.733556 ATTCAACAATATATTTCGGGTAGCATA 57.266 29.630 0.00 0.00 0.00 3.14
3591 3655 9.733556 TTCAACAATATATTTCGGGTAGCATAT 57.266 29.630 0.00 0.00 0.00 1.78
3642 3706 5.195001 GTCAAACTTAGACCCAAAATGCA 57.805 39.130 0.00 0.00 0.00 3.96
3643 3707 5.596845 GTCAAACTTAGACCCAAAATGCAA 58.403 37.500 0.00 0.00 0.00 4.08
3644 3708 5.691754 GTCAAACTTAGACCCAAAATGCAAG 59.308 40.000 0.00 0.00 0.00 4.01
3645 3709 4.871933 AACTTAGACCCAAAATGCAAGG 57.128 40.909 0.00 0.00 0.00 3.61
3649 3713 2.670459 CCCAAAATGCAAGGGGGC 59.330 61.111 8.56 0.00 38.98 5.80
3650 3714 2.670459 CCAAAATGCAAGGGGGCC 59.330 61.111 0.00 0.00 0.00 5.80
3651 3715 1.919816 CCAAAATGCAAGGGGGCCT 60.920 57.895 0.84 0.00 33.87 5.19
3652 3716 0.617249 CCAAAATGCAAGGGGGCCTA 60.617 55.000 0.84 0.00 31.13 3.93
3653 3717 1.274712 CAAAATGCAAGGGGGCCTAA 58.725 50.000 0.84 0.00 31.13 2.69
3654 3718 1.839354 CAAAATGCAAGGGGGCCTAAT 59.161 47.619 0.84 0.00 31.13 1.73
3655 3719 3.037549 CAAAATGCAAGGGGGCCTAATA 58.962 45.455 0.84 0.00 31.13 0.98
3656 3720 3.413105 AAATGCAAGGGGGCCTAATAA 57.587 42.857 0.84 0.00 31.13 1.40
3657 3721 3.413105 AATGCAAGGGGGCCTAATAAA 57.587 42.857 0.84 0.00 31.13 1.40
3658 3722 2.153034 TGCAAGGGGGCCTAATAAAC 57.847 50.000 0.84 0.00 31.13 2.01
3659 3723 1.342574 TGCAAGGGGGCCTAATAAACC 60.343 52.381 0.84 0.00 31.13 3.27
3660 3724 2.032680 GCAAGGGGGCCTAATAAACCC 61.033 57.143 0.84 2.05 43.44 4.11
3661 3725 0.554305 AAGGGGGCCTAATAAACCCG 59.446 55.000 0.84 0.00 46.10 5.28
3662 3726 1.152138 GGGGGCCTAATAAACCCGG 59.848 63.158 0.84 0.00 45.27 5.73
3663 3727 1.354942 GGGGGCCTAATAAACCCGGA 61.355 60.000 0.73 0.00 45.27 5.14
3664 3728 0.179009 GGGGCCTAATAAACCCGGAC 60.179 60.000 0.73 0.00 45.27 4.79
3665 3729 0.533531 GGGCCTAATAAACCCGGACG 60.534 60.000 0.73 0.00 32.92 4.79
3666 3730 0.533531 GGCCTAATAAACCCGGACGG 60.534 60.000 0.73 3.25 37.81 4.79
3667 3731 0.465287 GCCTAATAAACCCGGACGGA 59.535 55.000 13.13 0.00 37.50 4.69
3668 3732 1.539712 GCCTAATAAACCCGGACGGAG 60.540 57.143 13.13 5.04 37.50 4.63
3669 3733 1.069668 CCTAATAAACCCGGACGGAGG 59.930 57.143 13.13 5.18 37.50 4.30
3670 3734 1.758862 CTAATAAACCCGGACGGAGGT 59.241 52.381 13.13 0.00 38.27 3.85
3671 3735 1.864669 AATAAACCCGGACGGAGGTA 58.135 50.000 13.13 1.24 34.45 3.08
3672 3736 1.406903 ATAAACCCGGACGGAGGTAG 58.593 55.000 13.13 0.00 34.45 3.18
3673 3737 0.039618 TAAACCCGGACGGAGGTAGT 59.960 55.000 13.13 0.00 34.45 2.73
3674 3738 0.039618 AAACCCGGACGGAGGTAGTA 59.960 55.000 13.13 0.00 34.45 1.82
3730 3794 9.777297 AGCATTTGTTACATTTAATGGTCTTTT 57.223 25.926 9.88 0.00 34.65 2.27
3785 3849 7.519347 TCAACCTGTTATCCCTTATTACCTT 57.481 36.000 0.00 0.00 0.00 3.50
3799 3863 3.795623 TTACCTTATCACAGTCTCGGC 57.204 47.619 0.00 0.00 0.00 5.54
3826 3890 7.948034 AGAGCAGTATCTGAAAGTAAGTACT 57.052 36.000 0.66 0.00 33.72 2.73
3827 3891 7.992008 AGAGCAGTATCTGAAAGTAAGTACTC 58.008 38.462 0.00 0.00 32.05 2.59
3828 3892 7.067737 AGAGCAGTATCTGAAAGTAAGTACTCC 59.932 40.741 0.00 0.00 32.05 3.85
3829 3893 6.097129 AGCAGTATCTGAAAGTAAGTACTCCC 59.903 42.308 0.00 0.00 32.05 4.30
3830 3894 6.097129 GCAGTATCTGAAAGTAAGTACTCCCT 59.903 42.308 0.00 0.00 32.05 4.20
3831 3895 7.682501 GCAGTATCTGAAAGTAAGTACTCCCTC 60.683 44.444 0.00 0.00 32.05 4.30
3832 3896 6.834969 AGTATCTGAAAGTAAGTACTCCCTCC 59.165 42.308 0.00 0.00 34.99 4.30
3833 3897 4.015084 TCTGAAAGTAAGTACTCCCTCCG 58.985 47.826 0.00 0.00 34.99 4.63
3834 3898 3.762823 CTGAAAGTAAGTACTCCCTCCGT 59.237 47.826 0.00 0.00 34.99 4.69
3835 3899 3.760684 TGAAAGTAAGTACTCCCTCCGTC 59.239 47.826 0.00 0.00 34.99 4.79
3836 3900 3.735720 AAGTAAGTACTCCCTCCGTCT 57.264 47.619 0.00 0.00 34.99 4.18
3837 3901 3.280197 AGTAAGTACTCCCTCCGTCTC 57.720 52.381 0.00 0.00 0.00 3.36
3838 3902 2.575279 AGTAAGTACTCCCTCCGTCTCA 59.425 50.000 0.00 0.00 0.00 3.27
3839 3903 2.599408 AAGTACTCCCTCCGTCTCAA 57.401 50.000 0.00 0.00 0.00 3.02
3840 3904 2.599408 AGTACTCCCTCCGTCTCAAA 57.401 50.000 0.00 0.00 0.00 2.69
3841 3905 2.885616 AGTACTCCCTCCGTCTCAAAA 58.114 47.619 0.00 0.00 0.00 2.44
3842 3906 3.442076 AGTACTCCCTCCGTCTCAAAAT 58.558 45.455 0.00 0.00 0.00 1.82
3843 3907 4.607239 AGTACTCCCTCCGTCTCAAAATA 58.393 43.478 0.00 0.00 0.00 1.40
3844 3908 5.021458 AGTACTCCCTCCGTCTCAAAATAA 58.979 41.667 0.00 0.00 0.00 1.40
3845 3909 4.473477 ACTCCCTCCGTCTCAAAATAAG 57.527 45.455 0.00 0.00 0.00 1.73
3846 3910 3.838903 ACTCCCTCCGTCTCAAAATAAGT 59.161 43.478 0.00 0.00 0.00 2.24
3847 3911 4.184629 CTCCCTCCGTCTCAAAATAAGTG 58.815 47.826 0.00 0.00 0.00 3.16
3848 3912 3.581332 TCCCTCCGTCTCAAAATAAGTGT 59.419 43.478 0.00 0.00 0.00 3.55
3849 3913 3.933332 CCCTCCGTCTCAAAATAAGTGTC 59.067 47.826 0.00 0.00 0.00 3.67
3850 3914 4.322801 CCCTCCGTCTCAAAATAAGTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
3851 3915 4.865365 CCTCCGTCTCAAAATAAGTGTCTC 59.135 45.833 0.00 0.00 0.00 3.36
3852 3916 4.482386 TCCGTCTCAAAATAAGTGTCTCG 58.518 43.478 0.00 0.00 0.00 4.04
3853 3917 4.216902 TCCGTCTCAAAATAAGTGTCTCGA 59.783 41.667 0.00 0.00 0.00 4.04
3854 3918 4.559251 CCGTCTCAAAATAAGTGTCTCGAG 59.441 45.833 5.93 5.93 0.00 4.04
3855 3919 5.391449 CGTCTCAAAATAAGTGTCTCGAGA 58.609 41.667 12.08 12.08 0.00 4.04
3856 3920 6.030849 CGTCTCAAAATAAGTGTCTCGAGAT 58.969 40.000 19.90 4.81 31.50 2.75
3857 3921 6.528423 CGTCTCAAAATAAGTGTCTCGAGATT 59.472 38.462 19.90 11.62 31.50 2.40
3858 3922 7.696872 CGTCTCAAAATAAGTGTCTCGAGATTA 59.303 37.037 19.90 13.53 31.50 1.75
3859 3923 9.015577 GTCTCAAAATAAGTGTCTCGAGATTAG 57.984 37.037 19.90 2.63 31.50 1.73
3860 3924 8.740906 TCTCAAAATAAGTGTCTCGAGATTAGT 58.259 33.333 19.90 9.76 0.00 2.24
3862 3926 9.784680 TCAAAATAAGTGTCTCGAGATTAGTAC 57.215 33.333 19.90 12.46 0.00 2.73
3863 3927 9.569167 CAAAATAAGTGTCTCGAGATTAGTACA 57.431 33.333 19.90 8.40 0.00 2.90
3865 3929 9.570488 AAATAAGTGTCTCGAGATTAGTACAAC 57.430 33.333 19.90 3.17 0.00 3.32
3866 3930 6.821031 AAGTGTCTCGAGATTAGTACAACT 57.179 37.500 19.90 9.26 0.00 3.16
3867 3931 6.821031 AGTGTCTCGAGATTAGTACAACTT 57.179 37.500 19.90 0.00 0.00 2.66
3868 3932 7.216973 AGTGTCTCGAGATTAGTACAACTTT 57.783 36.000 19.90 0.00 0.00 2.66
3869 3933 7.085116 AGTGTCTCGAGATTAGTACAACTTTG 58.915 38.462 19.90 0.00 0.00 2.77
3870 3934 6.862090 GTGTCTCGAGATTAGTACAACTTTGT 59.138 38.462 19.90 0.00 44.86 2.83
3871 3935 8.019669 GTGTCTCGAGATTAGTACAACTTTGTA 58.980 37.037 19.90 0.00 42.35 2.41
3886 3950 8.556213 ACAACTTTGTACTGAAGTTAGTTCAA 57.444 30.769 20.16 0.00 43.44 2.69
3887 3951 9.174166 ACAACTTTGTACTGAAGTTAGTTCAAT 57.826 29.630 20.16 0.00 43.44 2.57
3888 3952 9.438291 CAACTTTGTACTGAAGTTAGTTCAATG 57.562 33.333 20.16 8.78 44.83 2.82
3889 3953 7.639945 ACTTTGTACTGAAGTTAGTTCAATGC 58.360 34.615 3.96 0.00 44.83 3.56
3890 3954 7.499232 ACTTTGTACTGAAGTTAGTTCAATGCT 59.501 33.333 3.96 0.00 44.83 3.79
3891 3955 6.785488 TGTACTGAAGTTAGTTCAATGCTG 57.215 37.500 3.96 0.00 44.83 4.41
3892 3956 6.521162 TGTACTGAAGTTAGTTCAATGCTGA 58.479 36.000 3.96 0.00 44.83 4.26
3893 3957 6.646653 TGTACTGAAGTTAGTTCAATGCTGAG 59.353 38.462 3.96 0.00 44.83 3.35
3894 3958 5.858381 ACTGAAGTTAGTTCAATGCTGAGA 58.142 37.500 3.96 0.00 44.83 3.27
3895 3959 5.698545 ACTGAAGTTAGTTCAATGCTGAGAC 59.301 40.000 3.96 0.00 44.83 3.36
3896 3960 5.610398 TGAAGTTAGTTCAATGCTGAGACA 58.390 37.500 0.00 0.00 42.49 3.41
3897 3961 5.466728 TGAAGTTAGTTCAATGCTGAGACAC 59.533 40.000 0.00 0.00 42.49 3.67
3898 3962 5.220710 AGTTAGTTCAATGCTGAGACACT 57.779 39.130 0.00 0.00 31.69 3.55
3899 3963 5.615289 AGTTAGTTCAATGCTGAGACACTT 58.385 37.500 0.00 0.00 31.69 3.16
3900 3964 6.759272 AGTTAGTTCAATGCTGAGACACTTA 58.241 36.000 0.00 0.00 31.69 2.24
3901 3965 7.390027 AGTTAGTTCAATGCTGAGACACTTAT 58.610 34.615 0.00 0.00 31.69 1.73
3902 3966 7.880195 AGTTAGTTCAATGCTGAGACACTTATT 59.120 33.333 0.00 0.00 31.69 1.40
3903 3967 8.507249 GTTAGTTCAATGCTGAGACACTTATTT 58.493 33.333 0.00 0.00 31.69 1.40
3904 3968 7.516198 AGTTCAATGCTGAGACACTTATTTT 57.484 32.000 0.00 0.00 31.69 1.82
3905 3969 7.365741 AGTTCAATGCTGAGACACTTATTTTG 58.634 34.615 0.00 0.00 31.69 2.44
3906 3970 6.258230 TCAATGCTGAGACACTTATTTTGG 57.742 37.500 0.00 0.00 0.00 3.28
3907 3971 5.183713 TCAATGCTGAGACACTTATTTTGGG 59.816 40.000 0.00 0.00 0.00 4.12
3908 3972 4.365514 TGCTGAGACACTTATTTTGGGA 57.634 40.909 0.00 0.00 0.00 4.37
3909 3973 4.072131 TGCTGAGACACTTATTTTGGGAC 58.928 43.478 0.00 0.00 0.00 4.46
3910 3974 3.125316 GCTGAGACACTTATTTTGGGACG 59.875 47.826 0.00 0.00 0.00 4.79
3911 3975 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
3912 3976 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
3913 3977 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
3914 3978 3.581332 AGACACTTATTTTGGGACGGAGA 59.419 43.478 0.00 0.00 0.00 3.71
3915 3979 3.933332 GACACTTATTTTGGGACGGAGAG 59.067 47.826 0.00 0.00 0.00 3.20
3936 4000 6.217294 AGAGAGTAGTTAACTGACAGTTTGC 58.783 40.000 25.10 17.31 39.51 3.68
3937 4001 5.914033 AGAGTAGTTAACTGACAGTTTGCA 58.086 37.500 25.10 5.67 39.51 4.08
3938 4002 6.346096 AGAGTAGTTAACTGACAGTTTGCAA 58.654 36.000 25.10 11.55 39.51 4.08
4031 4180 2.743636 TCAACTCCGTGTCCTGATTC 57.256 50.000 0.00 0.00 0.00 2.52
4140 4289 4.323417 TCGTTGAAACTGCAGGTGATAAT 58.677 39.130 19.93 0.00 0.00 1.28
4167 4316 1.000283 CAACTCTTCGAGGCACTGAGT 60.000 52.381 0.00 0.00 41.55 3.41
4251 4400 2.435586 CCTGAGCCAGAACCAGCG 60.436 66.667 4.00 0.00 32.44 5.18
4312 4461 1.152546 GTTGGCAAAGACACCCCCT 60.153 57.895 0.00 0.00 0.00 4.79
4389 4538 3.634448 AGGATCTCGACGACATGATCTTT 59.366 43.478 19.14 9.74 36.51 2.52
4408 4557 2.396157 GGTAAGAAAGCCGGCACCG 61.396 63.158 31.54 1.02 39.44 4.94
4480 4629 4.082408 TCGGCTTATGATCAACGGGTATAG 60.082 45.833 0.00 0.00 0.00 1.31
4539 4690 2.070262 GCTCAGTGCATTTCCAAACC 57.930 50.000 0.00 0.00 42.31 3.27
4595 4746 1.600916 GTATCCCGGGGATTGCTGC 60.601 63.158 32.50 10.30 39.79 5.25
4610 4761 1.072173 TGCTGCACAGTGGTAGATGTT 59.928 47.619 0.00 0.00 0.00 2.71
4617 4768 4.143179 GCACAGTGGTAGATGTTTAACGTC 60.143 45.833 9.11 9.11 34.40 4.34
4621 4772 3.615496 GTGGTAGATGTTTAACGTCGCAT 59.385 43.478 11.11 0.00 39.07 4.73
4636 4787 1.811965 TCGCATTGAGTTTCATGTGGG 59.188 47.619 0.00 0.00 31.40 4.61
4666 4817 6.552859 TTTCTTTCTGTGATTGTTATGCGA 57.447 33.333 0.00 0.00 0.00 5.10
4679 4830 5.826601 TGTTATGCGAGCCAAATTATTGA 57.173 34.783 0.00 0.00 38.94 2.57
4704 4855 2.194212 GGGGCTGCTCTCATGCATG 61.194 63.158 21.07 21.07 42.48 4.06
4735 4886 8.919661 GGGTAAGTATATAAGTTTGTACATCGC 58.080 37.037 0.00 0.00 0.00 4.58
4736 4887 9.467258 GGTAAGTATATAAGTTTGTACATCGCA 57.533 33.333 0.00 0.00 0.00 5.10
4739 4890 8.534333 AGTATATAAGTTTGTACATCGCATGG 57.466 34.615 0.00 0.00 33.60 3.66
4742 4893 3.620427 AGTTTGTACATCGCATGGGTA 57.380 42.857 9.86 0.00 33.60 3.69
4743 4894 3.945346 AGTTTGTACATCGCATGGGTAA 58.055 40.909 9.86 0.00 33.60 2.85
4744 4895 3.938963 AGTTTGTACATCGCATGGGTAAG 59.061 43.478 9.86 3.78 33.60 2.34
4745 4896 3.620427 TTGTACATCGCATGGGTAAGT 57.380 42.857 9.86 9.22 33.60 2.24
4746 4897 4.739587 TTGTACATCGCATGGGTAAGTA 57.260 40.909 9.86 8.31 33.60 2.24
4747 4898 4.948341 TGTACATCGCATGGGTAAGTAT 57.052 40.909 9.86 0.00 33.60 2.12
4748 4899 6.408107 TTGTACATCGCATGGGTAAGTATA 57.592 37.500 9.86 6.94 33.60 1.47
4749 4900 6.599356 TGTACATCGCATGGGTAAGTATAT 57.401 37.500 9.86 0.00 33.60 0.86
4750 4901 7.706100 TGTACATCGCATGGGTAAGTATATA 57.294 36.000 9.86 1.35 33.60 0.86
4751 4902 8.124808 TGTACATCGCATGGGTAAGTATATAA 57.875 34.615 9.86 0.00 33.60 0.98
4752 4903 8.248253 TGTACATCGCATGGGTAAGTATATAAG 58.752 37.037 9.86 0.00 33.60 1.73
4753 4904 7.241042 ACATCGCATGGGTAAGTATATAAGT 57.759 36.000 9.86 0.00 33.60 2.24
4754 4905 8.357290 ACATCGCATGGGTAAGTATATAAGTA 57.643 34.615 9.86 0.00 33.60 2.24
4755 4906 8.978472 ACATCGCATGGGTAAGTATATAAGTAT 58.022 33.333 9.86 0.00 33.60 2.12
4853 5009 2.400399 AGAATTCAGCGACGAACGAAA 58.600 42.857 8.44 2.79 45.77 3.46
4855 5011 1.068474 ATTCAGCGACGAACGAAAGG 58.932 50.000 0.00 0.00 45.77 3.11
4856 5012 1.554042 TTCAGCGACGAACGAAAGGC 61.554 55.000 0.00 0.00 45.77 4.35
4857 5013 2.028484 AGCGACGAACGAAAGGCA 59.972 55.556 0.00 0.00 45.77 4.75
4858 5014 1.374252 AGCGACGAACGAAAGGCAT 60.374 52.632 0.00 0.00 45.77 4.40
4860 5016 0.717224 GCGACGAACGAAAGGCATAA 59.283 50.000 0.00 0.00 45.77 1.90
4861 5017 1.127213 GCGACGAACGAAAGGCATAAA 59.873 47.619 0.00 0.00 45.77 1.40
4862 5018 2.222953 GCGACGAACGAAAGGCATAAAT 60.223 45.455 0.00 0.00 45.77 1.40
4863 5019 3.342269 CGACGAACGAAAGGCATAAATG 58.658 45.455 0.14 0.00 45.77 2.32
4864 5020 3.181524 CGACGAACGAAAGGCATAAATGT 60.182 43.478 0.14 0.00 45.77 2.71
4865 5021 4.078363 ACGAACGAAAGGCATAAATGTG 57.922 40.909 0.14 0.00 0.00 3.21
4866 5022 2.845967 CGAACGAAAGGCATAAATGTGC 59.154 45.455 0.00 0.00 44.31 4.57
4868 5024 4.485163 GAACGAAAGGCATAAATGTGCTT 58.515 39.130 2.17 0.00 44.45 3.91
4869 5025 5.636837 GAACGAAAGGCATAAATGTGCTTA 58.363 37.500 2.17 0.00 44.45 3.09
4870 5026 5.835113 ACGAAAGGCATAAATGTGCTTAT 57.165 34.783 2.17 0.00 44.45 1.73
4871 5027 5.821204 ACGAAAGGCATAAATGTGCTTATC 58.179 37.500 2.17 0.00 44.45 1.75
4872 5028 5.590259 ACGAAAGGCATAAATGTGCTTATCT 59.410 36.000 2.17 0.00 44.45 1.98
4900 5056 7.447374 TCATTAATGTTCAAAATCGACAGGT 57.553 32.000 14.97 0.00 0.00 4.00
4917 5073 6.636001 CGACAGGTTATAACATGACGCAGTT 61.636 44.000 30.44 12.80 46.80 3.16
4942 5098 1.141858 GCTTACAGGCCAGGAATAGCT 59.858 52.381 5.01 0.00 0.00 3.32
4943 5099 2.843701 CTTACAGGCCAGGAATAGCTG 58.156 52.381 5.01 0.00 0.00 4.24
4944 5100 2.174685 TACAGGCCAGGAATAGCTGA 57.825 50.000 5.01 0.00 0.00 4.26
4945 5101 0.835941 ACAGGCCAGGAATAGCTGAG 59.164 55.000 5.01 0.00 0.00 3.35
4946 5102 0.534652 CAGGCCAGGAATAGCTGAGC 60.535 60.000 5.01 0.00 0.00 4.26
4947 5103 1.228094 GGCCAGGAATAGCTGAGCC 60.228 63.158 0.00 0.00 32.74 4.70
4948 5104 1.228094 GCCAGGAATAGCTGAGCCC 60.228 63.158 0.00 0.00 0.00 5.19
4949 5105 1.704007 GCCAGGAATAGCTGAGCCCT 61.704 60.000 0.00 0.00 0.00 5.19
4964 5120 3.357079 CCTCCTTGGCACGCACAC 61.357 66.667 0.00 0.00 0.00 3.82
4965 5121 2.281070 CTCCTTGGCACGCACACT 60.281 61.111 0.00 0.00 0.00 3.55
4966 5122 1.893808 CTCCTTGGCACGCACACTT 60.894 57.895 0.00 0.00 0.00 3.16
4981 5137 1.146707 ACTTACAACGCCAACGGGT 59.853 52.632 0.00 0.00 46.04 5.28
4983 5139 1.893168 CTTACAACGCCAACGGGTCG 61.893 60.000 0.00 0.00 46.04 4.79
4996 5152 1.141881 GGGTCGTCACGCTGATCAT 59.858 57.895 0.00 0.00 32.63 2.45
5001 5157 1.086067 CGTCACGCTGATCATTGGCT 61.086 55.000 0.00 0.00 0.00 4.75
5003 5159 0.538584 TCACGCTGATCATTGGCTCT 59.461 50.000 0.00 0.00 0.00 4.09
5022 5178 3.906846 CTCTGGCCCATAGAGATTAGGTT 59.093 47.826 12.27 0.00 43.41 3.50
5030 5186 4.040952 CCATAGAGATTAGGTTGTCAGGGG 59.959 50.000 0.00 0.00 0.00 4.79
5045 5201 0.408700 AGGGGACGACTAACTGGAGT 59.591 55.000 0.00 0.00 0.00 3.85
5046 5202 0.531200 GGGGACGACTAACTGGAGTG 59.469 60.000 0.00 0.00 0.00 3.51
5050 5206 3.080319 GGACGACTAACTGGAGTGTACT 58.920 50.000 0.00 0.00 0.00 2.73
5052 5208 4.022503 GGACGACTAACTGGAGTGTACTTT 60.023 45.833 0.00 0.00 0.00 2.66
5057 5217 6.481434 ACTAACTGGAGTGTACTTTTCACT 57.519 37.500 0.00 0.00 46.86 3.41
5069 5229 9.535878 AGTGTACTTTTCACTCAAAAACAAAAA 57.464 25.926 0.00 0.00 41.52 1.94
5109 5281 1.665137 AATTGGAGGTACCCCTTCGT 58.335 50.000 8.74 0.00 42.86 3.85
5120 5292 4.814900 CCTTCGTGGGTGATCTCG 57.185 61.111 0.00 0.00 0.00 4.04
5137 5309 3.063084 GAGCGGTCACTCGGGAGT 61.063 66.667 10.30 0.00 43.61 3.85
5164 5336 2.250939 CGACATGTGGTGGTGCGTT 61.251 57.895 1.15 0.00 0.00 4.84
5186 5358 3.353029 CGCCGCCATGTGTCACAA 61.353 61.111 10.28 0.00 0.00 3.33
5187 5359 2.562912 GCCGCCATGTGTCACAAG 59.437 61.111 10.28 5.39 0.00 3.16
5193 5365 1.542915 GCCATGTGTCACAAGCTGAAT 59.457 47.619 19.10 0.00 31.26 2.57
5202 5374 0.892755 ACAAGCTGAATGCACCCATG 59.107 50.000 0.00 0.00 45.94 3.66
5237 5409 8.723942 TTTTTGCACATGTGTTAGGTATTTTT 57.276 26.923 26.01 0.00 0.00 1.94
5348 5520 9.372541 CATGTGAAAAATAAAAACATGCTTCAC 57.627 29.630 0.00 0.00 41.00 3.18
5364 5536 0.858583 TCACGATGAAGCACAACACG 59.141 50.000 0.00 0.00 0.00 4.49
5365 5537 0.110688 CACGATGAAGCACAACACGG 60.111 55.000 0.00 0.00 0.00 4.94
5373 5545 1.509004 GCACAACACGGTTGTGGTT 59.491 52.632 32.23 10.25 46.11 3.67
5377 5549 1.397692 ACAACACGGTTGTGGTTTACG 59.602 47.619 17.86 0.00 46.11 3.18
5378 5550 1.664659 CAACACGGTTGTGGTTTACGA 59.335 47.619 8.17 0.00 46.11 3.43
5390 5562 4.705337 TGGTTTACGAAAAAGCACAACT 57.295 36.364 13.23 0.00 33.34 3.16
5406 5578 5.922739 CACAACTGTGCTTTAGTATGACA 57.077 39.130 0.00 0.00 39.39 3.58
5407 5579 6.299023 CACAACTGTGCTTTAGTATGACAA 57.701 37.500 0.00 0.00 39.39 3.18
5408 5580 6.136071 CACAACTGTGCTTTAGTATGACAAC 58.864 40.000 0.00 0.00 39.39 3.32
5409 5581 6.017934 CACAACTGTGCTTTAGTATGACAACT 60.018 38.462 0.00 0.00 39.39 3.16
5410 5582 6.017934 ACAACTGTGCTTTAGTATGACAACTG 60.018 38.462 0.00 0.00 0.00 3.16
5412 5584 6.755206 ACTGTGCTTTAGTATGACAACTGTA 58.245 36.000 0.00 0.00 0.00 2.74
5413 5585 6.645415 ACTGTGCTTTAGTATGACAACTGTAC 59.355 38.462 0.00 0.00 0.00 2.90
5414 5586 6.755206 TGTGCTTTAGTATGACAACTGTACT 58.245 36.000 0.00 0.00 33.55 2.73
5451 5642 5.015067 GTACGGTTGTACTTCTCAAAAGC 57.985 43.478 0.00 0.00 46.07 3.51
5453 5644 2.798283 CGGTTGTACTTCTCAAAAGCGA 59.202 45.455 5.76 0.00 42.52 4.93
5455 5646 4.524749 GGTTGTACTTCTCAAAAGCGAAC 58.475 43.478 0.00 0.00 0.00 3.95
5458 5649 5.151632 TGTACTTCTCAAAAGCGAACAAC 57.848 39.130 0.00 0.00 0.00 3.32
5460 5651 4.900635 ACTTCTCAAAAGCGAACAACAT 57.099 36.364 0.00 0.00 0.00 2.71
5467 5658 5.507077 TCAAAAGCGAACAACATAGTTCAC 58.493 37.500 7.49 0.00 46.32 3.18
5468 5659 3.788434 AAGCGAACAACATAGTTCACG 57.212 42.857 7.49 0.00 46.32 4.35
5473 5664 4.607235 GCGAACAACATAGTTCACGAAAAG 59.393 41.667 7.49 0.00 46.32 2.27
5489 5680 1.470051 AAAGGAACAACGGTGCTTGT 58.530 45.000 0.00 0.00 35.83 3.16
5491 5682 0.107410 AGGAACAACGGTGCTTGTCA 60.107 50.000 0.00 0.00 33.03 3.58
5497 5688 1.603802 CAACGGTGCTTGTCATGAAGT 59.396 47.619 0.00 0.00 0.00 3.01
5525 5716 5.536554 TGTGCTTTGCGAAAAATGAAAAA 57.463 30.435 0.00 0.00 0.00 1.94
5535 5726 7.963981 TGCGAAAAATGAAAAACACAATTGTA 58.036 26.923 11.53 0.00 33.55 2.41
5552 5743 4.647424 TTGTACTTTTTGCTTCCCACAG 57.353 40.909 0.00 0.00 0.00 3.66
5557 5748 4.020543 ACTTTTTGCTTCCCACAGTTGTA 58.979 39.130 0.00 0.00 0.00 2.41
5558 5749 4.649218 ACTTTTTGCTTCCCACAGTTGTAT 59.351 37.500 0.00 0.00 0.00 2.29
5604 5795 2.146342 CTCCTCGTGAAGCACAATTGT 58.854 47.619 4.92 4.92 33.40 2.71
5620 5811 3.788434 ATTGTAGTTGTGTTTCTCGCG 57.212 42.857 0.00 0.00 0.00 5.87
5641 5832 5.295431 CGGAAGCACAATTGTATTTCTCA 57.705 39.130 22.95 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 0.246757 CTTGTACGCGACGTCATTGC 60.247 55.000 15.93 10.09 41.54 3.56
166 172 2.027285 TGAGGCAATTGAGATTCGACCA 60.027 45.455 10.34 0.00 0.00 4.02
261 272 0.578211 CAACGTACGCGAACCTGTTT 59.422 50.000 15.93 0.00 42.00 2.83
360 371 4.152647 TCTTCTTGAGTAGAGGCTTGACA 58.847 43.478 0.00 0.00 33.51 3.58
418 429 3.782244 CGCTGTCGTTGCTGGCTC 61.782 66.667 0.00 0.00 0.00 4.70
500 511 2.162716 GCTTCAGTTAGCCCACGTG 58.837 57.895 9.08 9.08 35.06 4.49
542 554 3.532155 GATGCCGTCTCGCCTCCT 61.532 66.667 0.00 0.00 0.00 3.69
602 621 1.107945 GGGTTCGAGAGGGAGAGAAG 58.892 60.000 0.00 0.00 0.00 2.85
603 622 0.705253 AGGGTTCGAGAGGGAGAGAA 59.295 55.000 0.00 0.00 0.00 2.87
604 623 1.491332 CTAGGGTTCGAGAGGGAGAGA 59.509 57.143 0.00 0.00 0.00 3.10
605 624 1.213430 ACTAGGGTTCGAGAGGGAGAG 59.787 57.143 0.00 0.00 0.00 3.20
606 625 1.296984 ACTAGGGTTCGAGAGGGAGA 58.703 55.000 0.00 0.00 0.00 3.71
607 626 2.025898 GAACTAGGGTTCGAGAGGGAG 58.974 57.143 0.00 0.00 41.70 4.30
608 627 2.140839 GAACTAGGGTTCGAGAGGGA 57.859 55.000 0.00 0.00 41.70 4.20
662 692 8.624367 TCTGAAGTAGTAGCTATTACAGATCC 57.376 38.462 23.61 10.92 34.56 3.36
722 754 0.948623 CACAGACGATTGTTCCCGCA 60.949 55.000 0.00 0.00 0.00 5.69
725 757 1.464997 GCTTCACAGACGATTGTTCCC 59.535 52.381 0.00 0.00 0.00 3.97
726 758 2.143122 TGCTTCACAGACGATTGTTCC 58.857 47.619 0.00 0.00 0.00 3.62
727 759 3.878086 TTGCTTCACAGACGATTGTTC 57.122 42.857 0.00 0.00 0.00 3.18
728 760 4.836125 AATTGCTTCACAGACGATTGTT 57.164 36.364 0.00 0.00 0.00 2.83
729 761 4.836125 AAATTGCTTCACAGACGATTGT 57.164 36.364 0.00 0.00 0.00 2.71
730 762 5.214417 TCAAAATTGCTTCACAGACGATTG 58.786 37.500 0.00 0.00 0.00 2.67
731 763 5.009010 ACTCAAAATTGCTTCACAGACGATT 59.991 36.000 0.00 0.00 0.00 3.34
732 764 4.516698 ACTCAAAATTGCTTCACAGACGAT 59.483 37.500 0.00 0.00 0.00 3.73
733 765 3.876914 ACTCAAAATTGCTTCACAGACGA 59.123 39.130 0.00 0.00 0.00 4.20
734 766 4.214980 ACTCAAAATTGCTTCACAGACG 57.785 40.909 0.00 0.00 0.00 4.18
735 767 6.545504 TCTACTCAAAATTGCTTCACAGAC 57.454 37.500 0.00 0.00 0.00 3.51
736 768 8.846943 TTATCTACTCAAAATTGCTTCACAGA 57.153 30.769 0.00 0.00 0.00 3.41
737 769 9.499585 CATTATCTACTCAAAATTGCTTCACAG 57.500 33.333 0.00 0.00 0.00 3.66
738 770 9.230122 TCATTATCTACTCAAAATTGCTTCACA 57.770 29.630 0.00 0.00 0.00 3.58
741 773 9.727627 CCTTCATTATCTACTCAAAATTGCTTC 57.272 33.333 0.00 0.00 0.00 3.86
742 774 9.466497 TCCTTCATTATCTACTCAAAATTGCTT 57.534 29.630 0.00 0.00 0.00 3.91
743 775 9.638176 ATCCTTCATTATCTACTCAAAATTGCT 57.362 29.630 0.00 0.00 0.00 3.91
789 821 8.930760 CCTATTAGAGCAGCAATTAGTAACATC 58.069 37.037 0.00 0.00 0.00 3.06
796 828 6.090088 CGCTAACCTATTAGAGCAGCAATTAG 59.910 42.308 0.00 0.00 40.38 1.73
813 845 1.251251 AAGGTCACGTACGCTAACCT 58.749 50.000 23.56 23.56 42.08 3.50
985 1026 0.464036 TGGATGGATTTCGGGTCTCG 59.536 55.000 0.00 0.00 40.90 4.04
992 1033 0.588252 GGCGTGATGGATGGATTTCG 59.412 55.000 0.00 0.00 0.00 3.46
1071 1112 1.045911 CCTCCTCTCCTTCTTCCCCG 61.046 65.000 0.00 0.00 0.00 5.73
1072 1113 0.692756 CCCTCCTCTCCTTCTTCCCC 60.693 65.000 0.00 0.00 0.00 4.81
1073 1114 0.340208 TCCCTCCTCTCCTTCTTCCC 59.660 60.000 0.00 0.00 0.00 3.97
1077 1118 0.324830 CGGTTCCCTCCTCTCCTTCT 60.325 60.000 0.00 0.00 0.00 2.85
1080 1121 2.364448 GCGGTTCCCTCCTCTCCT 60.364 66.667 0.00 0.00 0.00 3.69
1082 1123 3.839432 CGGCGGTTCCCTCCTCTC 61.839 72.222 0.00 0.00 0.00 3.20
1083 1124 4.377760 TCGGCGGTTCCCTCCTCT 62.378 66.667 7.21 0.00 0.00 3.69
1105 1146 1.603739 GGGCTCACCTTGTTCCCAC 60.604 63.158 0.00 0.00 36.96 4.61
1174 1215 1.611936 GGCTGAGAAGGGTGGAGAAAC 60.612 57.143 0.00 0.00 0.00 2.78
1195 1236 2.663826 AGCAAGAAGAAGAGTAGGCG 57.336 50.000 0.00 0.00 0.00 5.52
1214 1259 2.637872 AGTGTTAGTAGCAGGGAAGCAA 59.362 45.455 0.00 0.00 36.85 3.91
1215 1260 2.028112 CAGTGTTAGTAGCAGGGAAGCA 60.028 50.000 0.00 0.00 36.85 3.91
1258 1303 2.499303 GATATGGGGATTGGGGGCGG 62.499 65.000 0.00 0.00 0.00 6.13
1259 1304 1.000896 GATATGGGGATTGGGGGCG 60.001 63.158 0.00 0.00 0.00 6.13
1260 1305 1.388133 GGATATGGGGATTGGGGGC 59.612 63.158 0.00 0.00 0.00 5.80
1261 1306 1.166125 TTGGATATGGGGATTGGGGG 58.834 55.000 0.00 0.00 0.00 5.40
1316 1365 1.674817 GGACGGTGATGGTTTGATCGT 60.675 52.381 0.00 0.00 0.00 3.73
1758 1807 4.281182 ACAAGTTGACAGGACAGGTAGTAG 59.719 45.833 10.54 0.00 0.00 2.57
1809 1862 3.554960 CCGTGGAGATTGAACTGAACTGA 60.555 47.826 0.00 0.00 0.00 3.41
1919 1976 7.487484 TGAGCATATCTGACAGAAACTAGAAG 58.513 38.462 9.70 0.00 0.00 2.85
1946 2003 4.579869 AGCTGAACAACCTACCTATGTTG 58.420 43.478 0.00 0.00 45.65 3.33
1950 2007 3.118738 CGGAAGCTGAACAACCTACCTAT 60.119 47.826 0.00 0.00 0.00 2.57
2094 2151 4.315803 CAACGTTAGGAGACAAGGACAAT 58.684 43.478 0.00 0.00 0.00 2.71
2102 2159 2.902705 AAGTGCAACGTTAGGAGACA 57.097 45.000 0.00 0.00 45.86 3.41
2115 2172 0.953727 CTGCAGGCAAGTAAAGTGCA 59.046 50.000 5.57 0.00 44.07 4.57
2137 2194 1.226974 CAGTCGATACCTGCCGTGG 60.227 63.158 0.00 0.00 0.00 4.94
2169 2230 2.274437 TGAGATTGTCGCTCATCTTGC 58.726 47.619 0.00 0.00 37.46 4.01
2671 2732 8.426489 AGTACCTTGTAAGTTTCTTCATACACA 58.574 33.333 0.00 0.00 0.00 3.72
2717 2778 4.761739 CCAGTTTAACAAGAGAGCATTCCA 59.238 41.667 0.00 0.00 0.00 3.53
2739 2800 4.379499 GCACTGTGTTCTGGTTAATTAGCC 60.379 45.833 11.22 11.22 0.00 3.93
2743 2804 5.852282 AAAGCACTGTGTTCTGGTTAATT 57.148 34.783 9.86 0.00 0.00 1.40
2747 2808 3.886123 AGTAAAGCACTGTGTTCTGGTT 58.114 40.909 9.86 0.00 35.62 3.67
2792 2854 6.913121 GTTCAAAAGGAACGAAATAAGCTC 57.087 37.500 0.00 0.00 45.82 4.09
2860 2922 4.916041 TGCATCCTAATTATCCCTCCTG 57.084 45.455 0.00 0.00 0.00 3.86
2861 2923 6.474918 AAATGCATCCTAATTATCCCTCCT 57.525 37.500 0.00 0.00 0.00 3.69
2930 2994 6.494893 TGATATAAGTTTCAGGCACAACAC 57.505 37.500 0.00 0.00 0.00 3.32
2973 3037 5.772521 ACTGAAATCCACATGTTTAACAGC 58.227 37.500 3.63 0.00 0.00 4.40
2989 3053 6.337356 ACGAAAACCAAATGTCAACTGAAAT 58.663 32.000 0.00 0.00 0.00 2.17
2998 3062 3.701241 TCTGCAACGAAAACCAAATGTC 58.299 40.909 0.00 0.00 0.00 3.06
3319 3383 5.348724 ACAACATGAACTACTCACATAAGCG 59.651 40.000 0.00 0.00 36.69 4.68
3325 3389 4.511454 GCTGAACAACATGAACTACTCACA 59.489 41.667 0.00 0.00 36.69 3.58
3341 3405 3.490439 TCACAGATTCCAAGCTGAACA 57.510 42.857 11.44 0.00 44.83 3.18
3349 3413 6.487668 CACATTGCCTATATCACAGATTCCAA 59.512 38.462 0.00 0.00 0.00 3.53
3388 3452 1.660560 CCCTGCCTTTTGAGATGCCG 61.661 60.000 0.00 0.00 0.00 5.69
3441 3505 1.139058 CCTCATAAACCCGGACAGAGG 59.861 57.143 0.73 6.99 35.70 3.69
3442 3506 1.831736 ACCTCATAAACCCGGACAGAG 59.168 52.381 0.73 0.99 0.00 3.35
3443 3507 1.829222 GACCTCATAAACCCGGACAGA 59.171 52.381 0.73 0.00 0.00 3.41
3444 3508 1.134491 GGACCTCATAAACCCGGACAG 60.134 57.143 0.73 0.00 0.00 3.51
3445 3509 0.906775 GGACCTCATAAACCCGGACA 59.093 55.000 0.73 0.00 0.00 4.02
3446 3510 0.179702 GGGACCTCATAAACCCGGAC 59.820 60.000 0.73 0.00 32.73 4.79
3447 3511 2.611520 GGGACCTCATAAACCCGGA 58.388 57.895 0.73 0.00 32.73 5.14
3460 3524 6.023975 TTTGGCTCAAAATGAAAGGGGACC 62.024 45.833 0.00 0.00 38.65 4.46
3461 3525 2.247358 TGGCTCAAAATGAAAGGGGAC 58.753 47.619 0.00 0.00 0.00 4.46
3462 3526 2.692709 TGGCTCAAAATGAAAGGGGA 57.307 45.000 0.00 0.00 0.00 4.81
3463 3527 3.071457 ACTTTGGCTCAAAATGAAAGGGG 59.929 43.478 0.00 0.00 32.75 4.79
3464 3528 4.341366 ACTTTGGCTCAAAATGAAAGGG 57.659 40.909 0.00 0.00 32.75 3.95
3465 3529 5.816777 TCAAACTTTGGCTCAAAATGAAAGG 59.183 36.000 1.62 0.00 32.75 3.11
3466 3530 6.238184 GGTCAAACTTTGGCTCAAAATGAAAG 60.238 38.462 6.09 0.00 35.12 2.62
3467 3531 5.584251 GGTCAAACTTTGGCTCAAAATGAAA 59.416 36.000 6.09 0.00 35.12 2.69
3468 3532 5.115480 GGTCAAACTTTGGCTCAAAATGAA 58.885 37.500 6.09 0.00 35.12 2.57
3469 3533 4.161189 TGGTCAAACTTTGGCTCAAAATGA 59.839 37.500 6.09 4.88 35.12 2.57
3470 3534 4.440880 TGGTCAAACTTTGGCTCAAAATG 58.559 39.130 6.09 3.14 35.12 2.32
3471 3535 4.751767 TGGTCAAACTTTGGCTCAAAAT 57.248 36.364 6.09 0.00 35.12 1.82
3472 3536 4.081198 ACATGGTCAAACTTTGGCTCAAAA 60.081 37.500 6.09 0.00 35.12 2.44
3473 3537 3.450457 ACATGGTCAAACTTTGGCTCAAA 59.550 39.130 6.09 1.27 35.12 2.69
3474 3538 3.030291 ACATGGTCAAACTTTGGCTCAA 58.970 40.909 6.09 0.00 35.12 3.02
3475 3539 2.665165 ACATGGTCAAACTTTGGCTCA 58.335 42.857 6.09 3.47 35.12 4.26
3476 3540 5.391312 AATACATGGTCAAACTTTGGCTC 57.609 39.130 6.09 0.00 35.12 4.70
3477 3541 5.806654 AAATACATGGTCAAACTTTGGCT 57.193 34.783 6.09 0.00 35.12 4.75
3478 3542 7.116233 CAGTTAAATACATGGTCAAACTTTGGC 59.884 37.037 0.00 0.00 33.62 4.52
3479 3543 8.356657 TCAGTTAAATACATGGTCAAACTTTGG 58.643 33.333 0.00 0.00 0.00 3.28
3480 3544 9.912634 ATCAGTTAAATACATGGTCAAACTTTG 57.087 29.630 0.00 0.00 0.00 2.77
3562 3626 8.908903 TGCTACCCGAAATATATTGTTGAATTT 58.091 29.630 0.00 0.00 0.00 1.82
3563 3627 8.458573 TGCTACCCGAAATATATTGTTGAATT 57.541 30.769 0.00 0.00 0.00 2.17
3564 3628 8.635765 ATGCTACCCGAAATATATTGTTGAAT 57.364 30.769 0.00 0.00 0.00 2.57
3565 3629 9.733556 ATATGCTACCCGAAATATATTGTTGAA 57.266 29.630 0.00 0.00 0.00 2.69
3620 3684 5.195001 TGCATTTTGGGTCTAAGTTTGAC 57.805 39.130 8.72 8.72 0.00 3.18
3621 3685 5.221422 CCTTGCATTTTGGGTCTAAGTTTGA 60.221 40.000 0.00 0.00 0.00 2.69
3622 3686 4.990426 CCTTGCATTTTGGGTCTAAGTTTG 59.010 41.667 0.00 0.00 0.00 2.93
3623 3687 4.040339 CCCTTGCATTTTGGGTCTAAGTTT 59.960 41.667 6.47 0.00 36.32 2.66
3624 3688 3.578282 CCCTTGCATTTTGGGTCTAAGTT 59.422 43.478 6.47 0.00 36.32 2.66
3625 3689 3.165071 CCCTTGCATTTTGGGTCTAAGT 58.835 45.455 6.47 0.00 36.32 2.24
3626 3690 2.497273 CCCCTTGCATTTTGGGTCTAAG 59.503 50.000 11.83 0.00 39.31 2.18
3627 3691 2.534990 CCCCTTGCATTTTGGGTCTAA 58.465 47.619 11.83 0.00 39.31 2.10
3628 3692 1.272985 CCCCCTTGCATTTTGGGTCTA 60.273 52.381 11.83 0.00 39.31 2.59
3629 3693 0.545071 CCCCCTTGCATTTTGGGTCT 60.545 55.000 11.83 0.00 39.31 3.85
3630 3694 1.982430 CCCCCTTGCATTTTGGGTC 59.018 57.895 11.83 0.00 39.31 4.46
3631 3695 2.223443 GCCCCCTTGCATTTTGGGT 61.223 57.895 11.42 0.00 39.31 4.51
3632 3696 2.670459 GCCCCCTTGCATTTTGGG 59.330 61.111 6.72 6.72 40.59 4.12
3633 3697 0.617249 TAGGCCCCCTTGCATTTTGG 60.617 55.000 0.00 0.00 34.61 3.28
3634 3698 1.274712 TTAGGCCCCCTTGCATTTTG 58.725 50.000 0.00 0.00 34.61 2.44
3635 3699 2.268796 ATTAGGCCCCCTTGCATTTT 57.731 45.000 0.00 0.00 34.61 1.82
3636 3700 3.413105 TTATTAGGCCCCCTTGCATTT 57.587 42.857 0.00 0.00 34.61 2.32
3637 3701 3.038280 GTTTATTAGGCCCCCTTGCATT 58.962 45.455 0.00 0.00 34.61 3.56
3638 3702 2.677914 GTTTATTAGGCCCCCTTGCAT 58.322 47.619 0.00 0.00 34.61 3.96
3639 3703 1.342574 GGTTTATTAGGCCCCCTTGCA 60.343 52.381 0.00 0.00 34.61 4.08
3640 3704 1.410004 GGTTTATTAGGCCCCCTTGC 58.590 55.000 0.00 0.00 34.61 4.01
3641 3705 1.752788 CGGGTTTATTAGGCCCCCTTG 60.753 57.143 0.00 0.00 39.22 3.61
3642 3706 0.554305 CGGGTTTATTAGGCCCCCTT 59.446 55.000 0.00 0.00 39.22 3.95
3643 3707 1.358051 CCGGGTTTATTAGGCCCCCT 61.358 60.000 0.00 0.00 39.22 4.79
3644 3708 1.152138 CCGGGTTTATTAGGCCCCC 59.848 63.158 0.00 0.00 39.22 5.40
3645 3709 0.179009 GTCCGGGTTTATTAGGCCCC 60.179 60.000 0.00 0.00 39.22 5.80
3646 3710 0.533531 CGTCCGGGTTTATTAGGCCC 60.534 60.000 0.00 0.00 39.03 5.80
3647 3711 0.533531 CCGTCCGGGTTTATTAGGCC 60.534 60.000 0.00 0.00 0.00 5.19
3648 3712 0.465287 TCCGTCCGGGTTTATTAGGC 59.535 55.000 0.00 0.00 37.00 3.93
3649 3713 1.069668 CCTCCGTCCGGGTTTATTAGG 59.930 57.143 0.00 0.00 37.00 2.69
3650 3714 1.758862 ACCTCCGTCCGGGTTTATTAG 59.241 52.381 0.00 0.00 37.00 1.73
3651 3715 1.864669 ACCTCCGTCCGGGTTTATTA 58.135 50.000 0.00 0.00 37.00 0.98
3652 3716 1.758862 CTACCTCCGTCCGGGTTTATT 59.241 52.381 0.00 0.00 37.07 1.40
3653 3717 1.342374 ACTACCTCCGTCCGGGTTTAT 60.342 52.381 0.00 0.00 37.07 1.40
3654 3718 0.039618 ACTACCTCCGTCCGGGTTTA 59.960 55.000 0.00 0.00 37.07 2.01
3655 3719 0.039618 TACTACCTCCGTCCGGGTTT 59.960 55.000 0.00 0.00 37.07 3.27
3656 3720 0.259938 ATACTACCTCCGTCCGGGTT 59.740 55.000 0.00 0.00 37.07 4.11
3657 3721 1.140312 TATACTACCTCCGTCCGGGT 58.860 55.000 0.00 0.00 39.40 5.28
3658 3722 2.089980 CATATACTACCTCCGTCCGGG 58.910 57.143 0.00 0.00 35.59 5.73
3659 3723 2.787994 ACATATACTACCTCCGTCCGG 58.212 52.381 0.00 0.00 0.00 5.14
3660 3724 5.106396 CCTTAACATATACTACCTCCGTCCG 60.106 48.000 0.00 0.00 0.00 4.79
3661 3725 6.006449 TCCTTAACATATACTACCTCCGTCC 58.994 44.000 0.00 0.00 0.00 4.79
3662 3726 7.516198 TTCCTTAACATATACTACCTCCGTC 57.484 40.000 0.00 0.00 0.00 4.79
3663 3727 7.902920 TTTCCTTAACATATACTACCTCCGT 57.097 36.000 0.00 0.00 0.00 4.69
3691 3755 7.257003 TGTAACAAATGCTAGCAACCAATATG 58.743 34.615 23.54 14.30 0.00 1.78
3730 3794 4.642885 GGGCCATTGTTGCAGTATACTAAA 59.357 41.667 4.39 0.55 0.00 1.85
3731 3795 4.080015 AGGGCCATTGTTGCAGTATACTAA 60.080 41.667 6.18 0.00 0.00 2.24
3785 3849 1.029947 TCTGCGCCGAGACTGTGATA 61.030 55.000 4.18 0.00 0.00 2.15
3799 3863 2.886081 ACTTTCAGATACTGCTCTGCG 58.114 47.619 3.62 0.00 42.00 5.18
3821 3885 2.599408 TTTGAGACGGAGGGAGTACT 57.401 50.000 0.00 0.00 0.00 2.73
3822 3886 3.889520 ATTTTGAGACGGAGGGAGTAC 57.110 47.619 0.00 0.00 0.00 2.73
3823 3887 5.021458 ACTTATTTTGAGACGGAGGGAGTA 58.979 41.667 0.00 0.00 0.00 2.59
3824 3888 3.838903 ACTTATTTTGAGACGGAGGGAGT 59.161 43.478 0.00 0.00 0.00 3.85
3825 3889 4.184629 CACTTATTTTGAGACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
3826 3890 3.581332 ACACTTATTTTGAGACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
3827 3891 3.933332 GACACTTATTTTGAGACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
3828 3892 4.822026 AGACACTTATTTTGAGACGGAGG 58.178 43.478 0.00 0.00 0.00 4.30
3829 3893 4.559251 CGAGACACTTATTTTGAGACGGAG 59.441 45.833 0.00 0.00 0.00 4.63
3830 3894 4.216902 TCGAGACACTTATTTTGAGACGGA 59.783 41.667 0.00 0.00 0.00 4.69
3831 3895 4.482386 TCGAGACACTTATTTTGAGACGG 58.518 43.478 0.00 0.00 0.00 4.79
3832 3896 5.391449 TCTCGAGACACTTATTTTGAGACG 58.609 41.667 12.08 0.00 0.00 4.18
3833 3897 7.820044 AATCTCGAGACACTTATTTTGAGAC 57.180 36.000 19.30 0.00 34.42 3.36
3834 3898 8.740906 ACTAATCTCGAGACACTTATTTTGAGA 58.259 33.333 19.30 0.00 35.88 3.27
3835 3899 8.918961 ACTAATCTCGAGACACTTATTTTGAG 57.081 34.615 19.30 3.45 0.00 3.02
3836 3900 9.784680 GTACTAATCTCGAGACACTTATTTTGA 57.215 33.333 19.30 0.00 0.00 2.69
3837 3901 9.569167 TGTACTAATCTCGAGACACTTATTTTG 57.431 33.333 19.30 9.64 0.00 2.44
3839 3903 9.570488 GTTGTACTAATCTCGAGACACTTATTT 57.430 33.333 19.30 8.85 0.00 1.40
3840 3904 8.958506 AGTTGTACTAATCTCGAGACACTTATT 58.041 33.333 19.30 9.61 0.00 1.40
3841 3905 8.508883 AGTTGTACTAATCTCGAGACACTTAT 57.491 34.615 19.30 4.18 0.00 1.73
3842 3906 7.918536 AGTTGTACTAATCTCGAGACACTTA 57.081 36.000 19.30 11.75 0.00 2.24
3843 3907 6.821031 AGTTGTACTAATCTCGAGACACTT 57.179 37.500 19.30 11.17 0.00 3.16
3844 3908 6.821031 AAGTTGTACTAATCTCGAGACACT 57.179 37.500 19.30 8.01 0.00 3.55
3845 3909 6.862090 ACAAAGTTGTACTAATCTCGAGACAC 59.138 38.462 19.30 11.06 40.16 3.67
3846 3910 6.978338 ACAAAGTTGTACTAATCTCGAGACA 58.022 36.000 19.30 7.85 40.16 3.41
3860 3924 9.656040 TTGAACTAACTTCAGTACAAAGTTGTA 57.344 29.630 25.10 12.88 44.47 2.41
3861 3925 8.556213 TTGAACTAACTTCAGTACAAAGTTGT 57.444 30.769 25.10 19.72 44.47 3.32
3862 3926 9.438291 CATTGAACTAACTTCAGTACAAAGTTG 57.562 33.333 25.10 19.31 44.47 3.16
3863 3927 8.129211 GCATTGAACTAACTTCAGTACAAAGTT 58.871 33.333 22.30 22.30 46.04 2.66
3864 3928 7.499232 AGCATTGAACTAACTTCAGTACAAAGT 59.501 33.333 7.61 7.61 40.12 2.66
3865 3929 7.800380 CAGCATTGAACTAACTTCAGTACAAAG 59.200 37.037 0.00 0.85 40.12 2.77
3866 3930 7.497579 TCAGCATTGAACTAACTTCAGTACAAA 59.502 33.333 0.00 0.00 40.12 2.83
3867 3931 6.989759 TCAGCATTGAACTAACTTCAGTACAA 59.010 34.615 0.00 0.00 40.12 2.41
3868 3932 6.521162 TCAGCATTGAACTAACTTCAGTACA 58.479 36.000 0.00 0.00 40.12 2.90
3869 3933 6.868864 TCTCAGCATTGAACTAACTTCAGTAC 59.131 38.462 0.00 0.00 40.12 2.73
3870 3934 6.868864 GTCTCAGCATTGAACTAACTTCAGTA 59.131 38.462 0.00 0.00 40.12 2.74
3871 3935 5.698545 GTCTCAGCATTGAACTAACTTCAGT 59.301 40.000 0.00 0.00 40.12 3.41
3872 3936 5.698089 TGTCTCAGCATTGAACTAACTTCAG 59.302 40.000 0.00 0.00 40.12 3.02
3873 3937 5.466728 GTGTCTCAGCATTGAACTAACTTCA 59.533 40.000 0.00 0.00 37.08 3.02
3874 3938 5.698545 AGTGTCTCAGCATTGAACTAACTTC 59.301 40.000 0.00 0.00 31.69 3.01
3875 3939 5.615289 AGTGTCTCAGCATTGAACTAACTT 58.385 37.500 0.00 0.00 31.69 2.66
3876 3940 5.220710 AGTGTCTCAGCATTGAACTAACT 57.779 39.130 0.00 0.00 31.69 2.24
3877 3941 5.931441 AAGTGTCTCAGCATTGAACTAAC 57.069 39.130 0.00 0.00 31.69 2.34
3878 3942 8.621532 AAATAAGTGTCTCAGCATTGAACTAA 57.378 30.769 0.00 0.00 31.69 2.24
3879 3943 8.506437 CAAAATAAGTGTCTCAGCATTGAACTA 58.494 33.333 0.00 0.00 31.69 2.24
3880 3944 7.365741 CAAAATAAGTGTCTCAGCATTGAACT 58.634 34.615 0.00 0.00 31.69 3.01
3881 3945 6.583806 CCAAAATAAGTGTCTCAGCATTGAAC 59.416 38.462 0.00 0.00 31.69 3.18
3882 3946 6.294675 CCCAAAATAAGTGTCTCAGCATTGAA 60.295 38.462 0.00 0.00 31.69 2.69
3883 3947 5.183713 CCCAAAATAAGTGTCTCAGCATTGA 59.816 40.000 0.00 0.00 0.00 2.57
3884 3948 5.183713 TCCCAAAATAAGTGTCTCAGCATTG 59.816 40.000 0.00 0.00 0.00 2.82
3885 3949 5.183904 GTCCCAAAATAAGTGTCTCAGCATT 59.816 40.000 0.00 0.00 0.00 3.56
3886 3950 4.702131 GTCCCAAAATAAGTGTCTCAGCAT 59.298 41.667 0.00 0.00 0.00 3.79
3887 3951 4.072131 GTCCCAAAATAAGTGTCTCAGCA 58.928 43.478 0.00 0.00 0.00 4.41
3888 3952 3.125316 CGTCCCAAAATAAGTGTCTCAGC 59.875 47.826 0.00 0.00 0.00 4.26
3889 3953 3.684788 CCGTCCCAAAATAAGTGTCTCAG 59.315 47.826 0.00 0.00 0.00 3.35
3890 3954 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
3891 3955 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
3892 3956 3.581332 TCTCCGTCCCAAAATAAGTGTCT 59.419 43.478 0.00 0.00 0.00 3.41
3893 3957 3.933332 CTCTCCGTCCCAAAATAAGTGTC 59.067 47.826 0.00 0.00 0.00 3.67
3894 3958 3.581332 TCTCTCCGTCCCAAAATAAGTGT 59.419 43.478 0.00 0.00 0.00 3.55
3895 3959 4.184629 CTCTCTCCGTCCCAAAATAAGTG 58.815 47.826 0.00 0.00 0.00 3.16
3896 3960 3.838903 ACTCTCTCCGTCCCAAAATAAGT 59.161 43.478 0.00 0.00 0.00 2.24
3897 3961 4.473477 ACTCTCTCCGTCCCAAAATAAG 57.527 45.455 0.00 0.00 0.00 1.73
3898 3962 5.021458 ACTACTCTCTCCGTCCCAAAATAA 58.979 41.667 0.00 0.00 0.00 1.40
3899 3963 4.607239 ACTACTCTCTCCGTCCCAAAATA 58.393 43.478 0.00 0.00 0.00 1.40
3900 3964 3.442076 ACTACTCTCTCCGTCCCAAAAT 58.558 45.455 0.00 0.00 0.00 1.82
3901 3965 2.885616 ACTACTCTCTCCGTCCCAAAA 58.114 47.619 0.00 0.00 0.00 2.44
3902 3966 2.599408 ACTACTCTCTCCGTCCCAAA 57.401 50.000 0.00 0.00 0.00 3.28
3903 3967 2.599408 AACTACTCTCTCCGTCCCAA 57.401 50.000 0.00 0.00 0.00 4.12
3904 3968 3.009916 AGTTAACTACTCTCTCCGTCCCA 59.990 47.826 6.26 0.00 28.23 4.37
3905 3969 3.377798 CAGTTAACTACTCTCTCCGTCCC 59.622 52.174 8.04 0.00 33.85 4.46
3906 3970 4.094739 GTCAGTTAACTACTCTCTCCGTCC 59.905 50.000 8.04 0.00 33.85 4.79
3907 3971 4.694509 TGTCAGTTAACTACTCTCTCCGTC 59.305 45.833 8.04 0.00 33.85 4.79
3908 3972 4.649692 TGTCAGTTAACTACTCTCTCCGT 58.350 43.478 8.04 0.00 33.85 4.69
3909 3973 4.696402 ACTGTCAGTTAACTACTCTCTCCG 59.304 45.833 8.04 0.00 33.85 4.63
3910 3974 6.578163 AACTGTCAGTTAACTACTCTCTCC 57.422 41.667 16.74 0.00 36.52 3.71
3911 3975 6.363896 GCAAACTGTCAGTTAACTACTCTCTC 59.636 42.308 18.45 0.00 37.47 3.20
3912 3976 6.183360 TGCAAACTGTCAGTTAACTACTCTCT 60.183 38.462 18.45 0.00 37.47 3.10
3913 3977 5.983720 TGCAAACTGTCAGTTAACTACTCTC 59.016 40.000 18.45 0.00 37.47 3.20
3914 3978 5.914033 TGCAAACTGTCAGTTAACTACTCT 58.086 37.500 18.45 0.00 37.47 3.24
3915 3979 6.598753 TTGCAAACTGTCAGTTAACTACTC 57.401 37.500 18.45 2.65 37.47 2.59
3980 4129 9.366216 GCATCGTACTGGTATAATATTGAATCA 57.634 33.333 0.00 0.00 0.00 2.57
3981 4130 9.587772 AGCATCGTACTGGTATAATATTGAATC 57.412 33.333 0.00 0.00 0.00 2.52
4031 4180 4.366586 CATGTATGTGAGGTGCAGTAGAG 58.633 47.826 0.00 0.00 0.00 2.43
4107 4256 4.201763 GCAGTTTCAACGATTCTCTGGATC 60.202 45.833 0.00 0.00 0.00 3.36
4122 4271 4.264253 CCTCATTATCACCTGCAGTTTCA 58.736 43.478 13.81 0.00 0.00 2.69
4125 4274 2.240667 AGCCTCATTATCACCTGCAGTT 59.759 45.455 13.81 0.00 0.00 3.16
4167 4316 4.466370 ACTTTCTGGAGTTCATCGTGGATA 59.534 41.667 0.00 0.00 0.00 2.59
4251 4400 1.207089 TCCACCGTGACTGGAATCATC 59.793 52.381 0.00 0.00 34.70 2.92
4312 4461 0.537188 GACCCAGCTGATTTCCTCGA 59.463 55.000 17.39 0.00 0.00 4.04
4389 4538 1.302993 GGTGCCGGCTTTCTTACCA 60.303 57.895 29.70 0.00 0.00 3.25
4408 4557 2.044551 CCTTTCCTGCTGGGAGGC 60.045 66.667 16.14 0.00 46.01 4.70
4480 4629 3.460857 AGTTTCAGCCGGACAGATATC 57.539 47.619 5.05 0.00 0.00 1.63
4539 4690 3.504863 GCAAGCACAAACCTGTATCATG 58.495 45.455 0.00 0.00 33.22 3.07
4595 4746 4.089493 CGACGTTAAACATCTACCACTGTG 59.911 45.833 0.00 0.00 0.00 3.66
4610 4761 4.212425 ACATGAAACTCAATGCGACGTTAA 59.788 37.500 0.00 0.00 0.00 2.01
4617 4768 1.811965 TCCCACATGAAACTCAATGCG 59.188 47.619 0.00 0.00 0.00 4.73
4621 4772 2.711009 AGGAGTCCCACATGAAACTCAA 59.289 45.455 5.25 0.00 39.90 3.02
4636 4787 6.625873 ACAATCACAGAAAGAAAAGGAGTC 57.374 37.500 0.00 0.00 0.00 3.36
4666 4817 4.384427 CCCCAGCATTTCAATAATTTGGCT 60.384 41.667 0.00 0.00 33.44 4.75
4679 4830 1.379576 GAGAGCAGCCCCAGCATTT 60.380 57.895 0.00 0.00 43.56 2.32
4704 4855 8.996271 GTACAAACTTATATACTTACCCATGCC 58.004 37.037 0.00 0.00 0.00 4.40
4745 4896 9.347240 GCAGACCCCGTCTTATATACTTATATA 57.653 37.037 0.00 0.00 41.37 0.86
4746 4897 8.060075 AGCAGACCCCGTCTTATATACTTATAT 58.940 37.037 0.00 0.00 41.37 0.86
4747 4898 7.408543 AGCAGACCCCGTCTTATATACTTATA 58.591 38.462 0.00 0.00 41.37 0.98
4748 4899 6.254522 AGCAGACCCCGTCTTATATACTTAT 58.745 40.000 0.00 0.00 41.37 1.73
4749 4900 5.638133 AGCAGACCCCGTCTTATATACTTA 58.362 41.667 0.00 0.00 41.37 2.24
4750 4901 4.481072 AGCAGACCCCGTCTTATATACTT 58.519 43.478 0.00 0.00 41.37 2.24
4751 4902 4.080687 GAGCAGACCCCGTCTTATATACT 58.919 47.826 0.00 0.00 41.37 2.12
4752 4903 3.119919 CGAGCAGACCCCGTCTTATATAC 60.120 52.174 0.00 0.00 41.37 1.47
4753 4904 3.079578 CGAGCAGACCCCGTCTTATATA 58.920 50.000 0.00 0.00 41.37 0.86
4754 4905 1.887198 CGAGCAGACCCCGTCTTATAT 59.113 52.381 0.00 0.00 41.37 0.86
4755 4906 1.315690 CGAGCAGACCCCGTCTTATA 58.684 55.000 0.00 0.00 41.37 0.98
4756 4907 0.683504 ACGAGCAGACCCCGTCTTAT 60.684 55.000 0.00 0.00 41.37 1.73
4757 4908 0.896940 AACGAGCAGACCCCGTCTTA 60.897 55.000 0.00 0.00 41.37 2.10
4801 4957 7.762159 TCTTCAAAATAACTTGGGTGACAAAAC 59.238 33.333 0.00 0.00 38.91 2.43
4810 4966 7.940850 TCTTTCAGTCTTCAAAATAACTTGGG 58.059 34.615 0.00 0.00 0.00 4.12
4862 5018 9.230122 TGAACATTAATGAAGAAGATAAGCACA 57.770 29.630 22.16 0.00 0.00 4.57
4870 5026 9.825972 GTCGATTTTGAACATTAATGAAGAAGA 57.174 29.630 22.16 6.62 0.00 2.87
4871 5027 9.611284 TGTCGATTTTGAACATTAATGAAGAAG 57.389 29.630 22.16 4.53 0.00 2.85
4872 5028 9.611284 CTGTCGATTTTGAACATTAATGAAGAA 57.389 29.630 22.16 8.73 0.00 2.52
4881 5037 8.788806 TGTTATAACCTGTCGATTTTGAACATT 58.211 29.630 13.01 0.00 0.00 2.71
4889 5045 5.006358 GCGTCATGTTATAACCTGTCGATTT 59.994 40.000 29.40 1.15 37.91 2.17
4917 5073 2.265739 CTGGCCTGTAAGCGAGCA 59.734 61.111 3.32 0.00 31.64 4.26
4946 5102 4.641645 TGTGCGTGCCAAGGAGGG 62.642 66.667 0.00 0.00 38.09 4.30
4947 5103 3.357079 GTGTGCGTGCCAAGGAGG 61.357 66.667 0.00 0.00 41.84 4.30
4948 5104 0.602638 TAAGTGTGCGTGCCAAGGAG 60.603 55.000 0.00 0.00 0.00 3.69
4949 5105 0.882927 GTAAGTGTGCGTGCCAAGGA 60.883 55.000 0.00 0.00 0.00 3.36
4964 5120 1.864176 GACCCGTTGGCGTTGTAAG 59.136 57.895 0.00 0.00 36.15 2.34
4965 5121 1.955157 CGACCCGTTGGCGTTGTAA 60.955 57.895 0.00 0.00 36.15 2.41
4966 5122 2.356075 CGACCCGTTGGCGTTGTA 60.356 61.111 0.00 0.00 36.15 2.41
4981 5137 1.083806 GCCAATGATCAGCGTGACGA 61.084 55.000 10.10 0.00 0.00 4.20
4983 5139 0.654683 GAGCCAATGATCAGCGTGAC 59.345 55.000 0.09 0.00 0.00 3.67
5001 5157 3.637821 ACCTAATCTCTATGGGCCAGA 57.362 47.619 13.78 6.50 0.00 3.86
5003 5159 3.391296 GACAACCTAATCTCTATGGGCCA 59.609 47.826 9.61 9.61 0.00 5.36
5022 5178 1.254026 CAGTTAGTCGTCCCCTGACA 58.746 55.000 0.00 0.00 41.85 3.58
5030 5186 4.762956 AAGTACACTCCAGTTAGTCGTC 57.237 45.455 0.00 0.00 0.00 4.20
5109 5281 2.362503 ACCGCTCGAGATCACCCA 60.363 61.111 18.75 0.00 0.00 4.51
5120 5292 3.063084 ACTCCCGAGTGACCGCTC 61.063 66.667 0.00 0.71 40.75 5.03
5137 5309 2.669229 CACATGTCGCAGGGTGCA 60.669 61.111 0.00 0.00 45.36 4.57
5143 5315 2.969806 GCACCACCACATGTCGCAG 61.970 63.158 0.00 0.00 0.00 5.18
5147 5319 1.163420 TGAACGCACCACCACATGTC 61.163 55.000 0.00 0.00 0.00 3.06
5169 5341 3.313007 CTTGTGACACATGGCGGCG 62.313 63.158 9.55 0.51 0.00 6.46
5186 5358 0.395311 CTCCATGGGTGCATTCAGCT 60.395 55.000 13.02 0.00 45.94 4.24
5187 5359 0.394762 TCTCCATGGGTGCATTCAGC 60.395 55.000 13.02 0.00 45.96 4.26
5193 5365 2.380064 AAAACTTCTCCATGGGTGCA 57.620 45.000 13.02 0.00 0.00 4.57
5322 5494 9.372541 GTGAAGCATGTTTTTATTTTTCACATG 57.627 29.630 6.28 6.28 45.03 3.21
5323 5495 8.274939 CGTGAAGCATGTTTTTATTTTTCACAT 58.725 29.630 12.64 0.00 41.78 3.21
5324 5496 7.489435 TCGTGAAGCATGTTTTTATTTTTCACA 59.511 29.630 12.64 0.00 41.78 3.58
5348 5520 0.586319 AACCGTGTTGTGCTTCATCG 59.414 50.000 0.00 0.00 0.00 3.84
5364 5536 3.548668 GTGCTTTTTCGTAAACCACAACC 59.451 43.478 10.59 0.00 31.25 3.77
5365 5537 4.167268 TGTGCTTTTTCGTAAACCACAAC 58.833 39.130 13.92 0.43 34.99 3.32
5371 5543 5.356063 CACAGTTGTGCTTTTTCGTAAAC 57.644 39.130 0.00 0.00 39.39 2.01
5390 5562 6.755206 AGTACAGTTGTCATACTAAAGCACA 58.245 36.000 0.00 0.00 0.00 4.57
5398 5570 8.514330 TTTCCAAAAAGTACAGTTGTCATACT 57.486 30.769 0.00 0.00 0.00 2.12
5413 5585 7.252708 ACAACCGTACTTTACTTTCCAAAAAG 58.747 34.615 0.00 0.00 46.11 2.27
5414 5586 7.155655 ACAACCGTACTTTACTTTCCAAAAA 57.844 32.000 0.00 0.00 0.00 1.94
5440 5631 5.990408 ACTATGTTGTTCGCTTTTGAGAAG 58.010 37.500 0.00 0.00 38.84 2.85
5451 5642 5.050634 TCCTTTTCGTGAACTATGTTGTTCG 60.051 40.000 0.00 0.00 46.59 3.95
5453 5644 6.094325 TGTTCCTTTTCGTGAACTATGTTGTT 59.906 34.615 0.00 0.00 41.10 2.83
5455 5646 6.055231 TGTTCCTTTTCGTGAACTATGTTG 57.945 37.500 0.00 0.00 41.10 3.33
5458 5649 5.137403 CGTTGTTCCTTTTCGTGAACTATG 58.863 41.667 0.00 0.00 41.10 2.23
5460 5651 3.556775 CCGTTGTTCCTTTTCGTGAACTA 59.443 43.478 0.00 0.00 41.10 2.24
5467 5658 0.661020 AGCACCGTTGTTCCTTTTCG 59.339 50.000 0.00 0.00 0.00 3.46
5468 5659 2.159296 ACAAGCACCGTTGTTCCTTTTC 60.159 45.455 0.00 0.00 37.36 2.29
5473 5664 0.951558 ATGACAAGCACCGTTGTTCC 59.048 50.000 0.00 0.00 40.83 3.62
5489 5680 5.220643 CGCAAAGCACATATGTACTTCATGA 60.221 40.000 19.36 0.00 37.91 3.07
5491 5682 4.875536 TCGCAAAGCACATATGTACTTCAT 59.124 37.500 19.36 4.76 40.25 2.57
5497 5688 6.616017 TCATTTTTCGCAAAGCACATATGTA 58.384 32.000 8.32 0.00 0.00 2.29
5511 5702 8.113675 AGTACAATTGTGTTTTTCATTTTTCGC 58.886 29.630 21.42 0.00 39.30 4.70
5525 5716 5.105146 TGGGAAGCAAAAAGTACAATTGTGT 60.105 36.000 21.42 5.40 42.09 3.72
5535 5726 2.831526 ACAACTGTGGGAAGCAAAAAGT 59.168 40.909 0.00 0.00 0.00 2.66
5569 5760 5.010719 TCACGAGGAGAGTTGTAGTTTTCAT 59.989 40.000 0.00 0.00 0.00 2.57
5576 5767 2.229062 TGCTTCACGAGGAGAGTTGTAG 59.771 50.000 0.00 0.00 0.00 2.74
5577 5768 2.030185 GTGCTTCACGAGGAGAGTTGTA 60.030 50.000 0.00 0.00 0.00 2.41
5586 5777 3.067106 ACTACAATTGTGCTTCACGAGG 58.933 45.455 21.42 1.53 37.14 4.63
5604 5795 2.400399 CTTCCGCGAGAAACACAACTA 58.600 47.619 8.23 0.00 32.88 2.24
5612 5803 1.069296 CAATTGTGCTTCCGCGAGAAA 60.069 47.619 8.23 0.00 39.65 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.