Multiple sequence alignment - TraesCS1A01G195000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G195000 chr1A 100.000 5459 0 0 1 5459 352012037 352017495 0.000000e+00 10081.0
1 TraesCS1A01G195000 chr1A 96.839 3353 94 4 2118 5459 244459087 244462438 0.000000e+00 5594.0
2 TraesCS1A01G195000 chr1A 90.686 1020 48 15 602 1587 244455219 244456225 0.000000e+00 1314.0
3 TraesCS1A01G195000 chr1A 96.471 595 21 0 1 595 146758570 146759164 0.000000e+00 983.0
4 TraesCS1A01G195000 chr1A 96.459 593 21 0 3 595 391888513 391889105 0.000000e+00 979.0
5 TraesCS1A01G195000 chr1A 96.309 596 21 1 1 595 539680660 539681255 0.000000e+00 977.0
6 TraesCS1A01G195000 chr1A 96.828 536 15 2 1588 2123 244456054 244456587 0.000000e+00 894.0
7 TraesCS1A01G195000 chr1A 82.798 436 62 11 1740 2174 360405878 360405455 1.440000e-100 377.0
8 TraesCS1A01G195000 chr1A 98.276 174 2 1 1588 1760 352013450 352013623 2.470000e-78 303.0
9 TraesCS1A01G195000 chr1A 98.276 174 2 1 1414 1587 352013624 352013796 2.470000e-78 303.0
10 TraesCS1A01G195000 chr1A 85.821 134 15 3 594 727 448267824 448267695 7.370000e-29 139.0
11 TraesCS1A01G195000 chr1A 95.312 64 3 0 5214 5277 352017188 352017251 9.670000e-18 102.0
12 TraesCS1A01G195000 chr1A 95.312 64 3 0 5152 5215 352017250 352017313 9.670000e-18 102.0
13 TraesCS1A01G195000 chr1A 100.000 43 0 0 4776 4818 244461790 244461832 4.530000e-11 80.5
14 TraesCS1A01G195000 chr2D 97.061 3879 82 7 1588 5459 437363667 437359814 0.000000e+00 6503.0
15 TraesCS1A01G195000 chr2D 93.603 2767 155 15 1588 4345 249394292 249397045 0.000000e+00 4109.0
16 TraesCS1A01G195000 chr2D 84.547 2019 267 35 1796 3784 411882183 411884186 0.000000e+00 1958.0
17 TraesCS1A01G195000 chr2D 84.257 2020 275 34 1796 3787 412563941 412561937 0.000000e+00 1929.0
18 TraesCS1A01G195000 chr2D 84.143 2018 276 35 1796 3784 409435359 409437361 0.000000e+00 1914.0
19 TraesCS1A01G195000 chr2D 94.083 1014 33 11 594 1587 437364501 437363495 0.000000e+00 1515.0
20 TraesCS1A01G195000 chr2D 87.774 638 61 11 955 1587 249393839 249394464 0.000000e+00 730.0
21 TraesCS1A01G195000 chr2D 92.593 216 13 3 4394 4606 249398803 249399018 1.910000e-79 307.0
22 TraesCS1A01G195000 chr2D 86.842 114 9 6 1055 1165 249393907 249394017 7.430000e-24 122.0
23 TraesCS1A01G195000 chr2D 95.312 64 3 0 5152 5215 437360066 437360003 9.670000e-18 102.0
24 TraesCS1A01G195000 chr2D 91.549 71 6 0 1080 1150 437364034 437363964 1.250000e-16 99.0
25 TraesCS1A01G195000 chr4A 96.470 3881 107 9 1588 5459 509336562 509340421 0.000000e+00 6381.0
26 TraesCS1A01G195000 chr4A 97.134 3385 89 4 1588 4970 510368877 510372255 0.000000e+00 5707.0
27 TraesCS1A01G195000 chr4A 94.461 1011 33 12 594 1587 509335730 509336734 0.000000e+00 1535.0
28 TraesCS1A01G195000 chr4A 92.801 1014 38 18 594 1587 510368051 510369049 0.000000e+00 1435.0
29 TraesCS1A01G195000 chr4A 93.553 667 28 3 4800 5459 510372256 510372914 0.000000e+00 979.0
30 TraesCS1A01G195000 chr7D 97.701 2871 61 4 1588 4456 273473514 273470647 0.000000e+00 4931.0
31 TraesCS1A01G195000 chr7D 95.245 1430 58 7 2920 4343 305335968 305337393 0.000000e+00 2255.0
32 TraesCS1A01G195000 chr7D 96.733 1102 28 2 4365 5459 273470646 273469546 0.000000e+00 1829.0
33 TraesCS1A01G195000 chr7D 92.892 1027 33 17 594 1587 273474361 273473342 0.000000e+00 1456.0
34 TraesCS1A01G195000 chr7D 87.500 696 60 15 896 1587 305317864 305318536 0.000000e+00 778.0
35 TraesCS1A01G195000 chr7D 92.647 476 30 4 4344 4817 305337445 305337917 0.000000e+00 680.0
36 TraesCS1A01G195000 chr7D 91.781 219 18 0 589 807 305317558 305317776 6.870000e-79 305.0
37 TraesCS1A01G195000 chr7D 93.805 113 7 0 4816 4928 305337874 305337986 2.610000e-38 171.0
38 TraesCS1A01G195000 chr7D 95.312 64 3 0 5152 5215 273469798 273469735 9.670000e-18 102.0
39 TraesCS1A01G195000 chr7D 100.000 43 0 0 4776 4818 273470193 273470151 4.530000e-11 80.5
40 TraesCS1A01G195000 chr6B 96.255 1629 55 4 2722 4345 400732534 400734161 0.000000e+00 2665.0
41 TraesCS1A01G195000 chr6B 93.200 500 22 8 1085 1581 400731104 400731594 0.000000e+00 725.0
42 TraesCS1A01G195000 chr6B 89.714 525 38 5 594 1104 400730634 400731156 0.000000e+00 656.0
43 TraesCS1A01G195000 chr6B 83.761 117 15 3 594 710 63108336 63108224 2.080000e-19 108.0
44 TraesCS1A01G195000 chr4D 96.170 1462 48 5 2889 4345 225728222 225726764 0.000000e+00 2383.0
45 TraesCS1A01G195000 chr4D 95.532 649 21 2 4818 5459 225726282 225725635 0.000000e+00 1031.0
46 TraesCS1A01G195000 chr4D 95.349 473 22 0 4344 4816 225726714 225726242 0.000000e+00 752.0
47 TraesCS1A01G195000 chr7A 96.639 595 20 0 1 595 292969780 292969186 0.000000e+00 989.0
48 TraesCS1A01G195000 chr3A 96.639 595 20 0 1 595 197118613 197118019 0.000000e+00 989.0
49 TraesCS1A01G195000 chr3A 83.846 260 36 4 4477 4731 467072586 467072328 5.460000e-60 243.0
50 TraesCS1A01G195000 chr2A 96.639 595 20 0 1 595 544239220 544239814 0.000000e+00 989.0
51 TraesCS1A01G195000 chr5A 96.471 595 21 0 1 595 669633446 669634040 0.000000e+00 983.0
52 TraesCS1A01G195000 chr6A 96.303 595 22 0 1 595 198382814 198382220 0.000000e+00 977.0
53 TraesCS1A01G195000 chr6A 96.303 595 22 0 1 595 479157597 479158191 0.000000e+00 977.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G195000 chr1A 352012037 352017495 5458 False 10081.000000 10081 100.000000 1 5459 1 chr1A.!!$F2 5458
1 TraesCS1A01G195000 chr1A 244455219 244462438 7219 False 1970.625000 5594 96.088250 602 5459 4 chr1A.!!$F5 4857
2 TraesCS1A01G195000 chr1A 146758570 146759164 594 False 983.000000 983 96.471000 1 595 1 chr1A.!!$F1 594
3 TraesCS1A01G195000 chr1A 391888513 391889105 592 False 979.000000 979 96.459000 3 595 1 chr1A.!!$F3 592
4 TraesCS1A01G195000 chr1A 539680660 539681255 595 False 977.000000 977 96.309000 1 595 1 chr1A.!!$F4 594
5 TraesCS1A01G195000 chr1A 352013450 352017313 3863 False 202.500000 303 96.794000 1414 5277 4 chr1A.!!$F6 3863
6 TraesCS1A01G195000 chr2D 437359814 437364501 4687 True 2054.750000 6503 94.501250 594 5459 4 chr2D.!!$R2 4865
7 TraesCS1A01G195000 chr2D 411882183 411884186 2003 False 1958.000000 1958 84.547000 1796 3784 1 chr2D.!!$F2 1988
8 TraesCS1A01G195000 chr2D 412561937 412563941 2004 True 1929.000000 1929 84.257000 1796 3787 1 chr2D.!!$R1 1991
9 TraesCS1A01G195000 chr2D 409435359 409437361 2002 False 1914.000000 1914 84.143000 1796 3784 1 chr2D.!!$F1 1988
10 TraesCS1A01G195000 chr2D 249393839 249399018 5179 False 1317.000000 4109 90.203000 955 4606 4 chr2D.!!$F3 3651
11 TraesCS1A01G195000 chr4A 509335730 509340421 4691 False 3958.000000 6381 95.465500 594 5459 2 chr4A.!!$F1 4865
12 TraesCS1A01G195000 chr4A 510368051 510372914 4863 False 2707.000000 5707 94.496000 594 5459 3 chr4A.!!$F2 4865
13 TraesCS1A01G195000 chr7D 273469546 273474361 4815 True 1679.700000 4931 96.527600 594 5459 5 chr7D.!!$R1 4865
14 TraesCS1A01G195000 chr7D 305335968 305337986 2018 False 1035.333333 2255 93.899000 2920 4928 3 chr7D.!!$F2 2008
15 TraesCS1A01G195000 chr7D 305317558 305318536 978 False 541.500000 778 89.640500 589 1587 2 chr7D.!!$F1 998
16 TraesCS1A01G195000 chr6B 400730634 400734161 3527 False 1348.666667 2665 93.056333 594 4345 3 chr6B.!!$F1 3751
17 TraesCS1A01G195000 chr4D 225725635 225728222 2587 True 1388.666667 2383 95.683667 2889 5459 3 chr4D.!!$R1 2570
18 TraesCS1A01G195000 chr7A 292969186 292969780 594 True 989.000000 989 96.639000 1 595 1 chr7A.!!$R1 594
19 TraesCS1A01G195000 chr3A 197118019 197118613 594 True 989.000000 989 96.639000 1 595 1 chr3A.!!$R1 594
20 TraesCS1A01G195000 chr2A 544239220 544239814 594 False 989.000000 989 96.639000 1 595 1 chr2A.!!$F1 594
21 TraesCS1A01G195000 chr5A 669633446 669634040 594 False 983.000000 983 96.471000 1 595 1 chr5A.!!$F1 594
22 TraesCS1A01G195000 chr6A 198382220 198382814 594 True 977.000000 977 96.303000 1 595 1 chr6A.!!$R1 594
23 TraesCS1A01G195000 chr6A 479157597 479158191 594 False 977.000000 977 96.303000 1 595 1 chr6A.!!$F1 594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
430 432 2.355010 CCTTCCTCTAGGCCCAAATG 57.645 55.000 0.0 0.0 34.44 2.32 F
1169 1293 1.002403 TTGGGGCGTGGATCTCCTA 59.998 57.895 0.0 0.0 36.82 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1452 1762 1.743995 GGCAACCGTCGCACCTAAT 60.744 57.895 0.00 0.0 0.00 1.73 R
5344 10172 7.453393 AGTTCCAATCTAAACTTGAGTCATGA 58.547 34.615 12.65 0.0 31.81 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 45 8.885494 ACAAAAGTAAATAAAATGCAGCAAGA 57.115 26.923 0.00 0.00 0.00 3.02
59 61 2.765699 GCAAGATGGCCCAATCCTTTTA 59.234 45.455 0.00 0.00 0.00 1.52
191 193 8.041919 TCGGTACTTTGATAATTTGGTATGTGA 58.958 33.333 0.00 0.00 0.00 3.58
197 199 8.821686 TTTGATAATTTGGTATGTGAGTGGAT 57.178 30.769 0.00 0.00 0.00 3.41
198 200 9.913310 TTTGATAATTTGGTATGTGAGTGGATA 57.087 29.630 0.00 0.00 0.00 2.59
224 226 4.821935 GGTGCTGCCCTTACTTGT 57.178 55.556 0.00 0.00 0.00 3.16
251 253 6.018433 AGCATCCCACTTATGATTAACCTT 57.982 37.500 0.00 0.00 0.00 3.50
430 432 2.355010 CCTTCCTCTAGGCCCAAATG 57.645 55.000 0.00 0.00 34.44 2.32
510 512 9.546428 ACATACATCTCATCAAAATATCGAACA 57.454 29.630 0.00 0.00 0.00 3.18
634 636 7.947782 TTAGTGACTCCCTAATAATTCCCAT 57.052 36.000 0.00 0.00 0.00 4.00
836 843 2.466982 CGTAGCGCTCTCCACCGTA 61.467 63.158 16.34 0.00 0.00 4.02
910 925 5.059833 ACCGCATAATCTCTTTCTCAATCC 58.940 41.667 0.00 0.00 0.00 3.01
985 1042 6.062749 CAGATCCATGTCTCTCAAATTGGAT 58.937 40.000 2.05 2.05 42.62 3.41
1018 1075 2.107901 GGCATGGATCCCTCTCTCAATT 59.892 50.000 9.90 0.00 0.00 2.32
1036 1093 6.655425 TCTCAATTACGTCTCTCTCTTTCTCA 59.345 38.462 0.00 0.00 0.00 3.27
1048 1105 5.830457 TCTCTCTTTCTCACAAACTCTCAGA 59.170 40.000 0.00 0.00 0.00 3.27
1050 1107 7.015098 TCTCTCTTTCTCACAAACTCTCAGATT 59.985 37.037 0.00 0.00 0.00 2.40
1169 1293 1.002403 TTGGGGCGTGGATCTCCTA 59.998 57.895 0.00 0.00 36.82 2.94
1233 1358 1.814429 TCAGGTTCCCCTTCTCACAA 58.186 50.000 0.00 0.00 39.89 3.33
1443 1752 3.066380 TGTCAACATCGTCATTGGTCAG 58.934 45.455 0.00 0.00 0.00 3.51
1444 1753 3.244044 TGTCAACATCGTCATTGGTCAGA 60.244 43.478 0.00 0.00 0.00 3.27
1452 1762 4.278310 TCGTCATTGGTCAGATTCTCCTA 58.722 43.478 0.00 0.00 0.00 2.94
1455 1765 6.549736 TCGTCATTGGTCAGATTCTCCTATTA 59.450 38.462 0.00 0.00 0.00 0.98
1477 1787 2.668280 GCGACGGTTGCCTCTGTTC 61.668 63.158 9.28 0.00 0.00 3.18
1494 1804 2.828520 TGTTCAGTTGCTTTTCACCCAA 59.171 40.909 0.00 0.00 0.00 4.12
1499 1809 5.495640 TCAGTTGCTTTTCACCCAATTTTT 58.504 33.333 0.00 0.00 0.00 1.94
1500 1810 6.644347 TCAGTTGCTTTTCACCCAATTTTTA 58.356 32.000 0.00 0.00 0.00 1.52
1501 1811 6.760770 TCAGTTGCTTTTCACCCAATTTTTAG 59.239 34.615 0.00 0.00 0.00 1.85
1503 1813 7.442062 CAGTTGCTTTTCACCCAATTTTTAGAT 59.558 33.333 0.00 0.00 0.00 1.98
1551 1861 4.824537 TCACATTGTTAGGCTTTGCACTTA 59.175 37.500 0.00 0.00 0.00 2.24
1581 1891 8.717821 TGTCATACAAACTAATCTTTCTTTCCG 58.282 33.333 0.00 0.00 0.00 4.30
1591 1901 9.892130 ACTAATCTTTCTTTCCGATTATTCTGT 57.108 29.630 0.00 0.00 31.45 3.41
1594 1904 7.290857 TCTTTCTTTCCGATTATTCTGTTCG 57.709 36.000 0.00 0.00 0.00 3.95
1595 1905 6.872020 TCTTTCTTTCCGATTATTCTGTTCGT 59.128 34.615 0.00 0.00 0.00 3.85
1596 1906 7.386848 TCTTTCTTTCCGATTATTCTGTTCGTT 59.613 33.333 0.00 0.00 0.00 3.85
1597 1907 6.403333 TCTTTCCGATTATTCTGTTCGTTG 57.597 37.500 0.00 0.00 0.00 4.10
1598 1908 5.929992 TCTTTCCGATTATTCTGTTCGTTGT 59.070 36.000 0.00 0.00 0.00 3.32
1599 1909 5.773239 TTCCGATTATTCTGTTCGTTGTC 57.227 39.130 0.00 0.00 0.00 3.18
1600 1910 4.811908 TCCGATTATTCTGTTCGTTGTCA 58.188 39.130 0.00 0.00 0.00 3.58
1601 1911 5.231702 TCCGATTATTCTGTTCGTTGTCAA 58.768 37.500 0.00 0.00 0.00 3.18
1602 1912 5.119588 TCCGATTATTCTGTTCGTTGTCAAC 59.880 40.000 5.58 5.58 0.00 3.18
1603 1913 5.107259 CCGATTATTCTGTTCGTTGTCAACA 60.107 40.000 15.79 0.63 32.75 3.33
1604 1914 6.402118 CCGATTATTCTGTTCGTTGTCAACAT 60.402 38.462 15.79 2.61 33.30 2.71
1605 1915 6.678663 CGATTATTCTGTTCGTTGTCAACATC 59.321 38.462 15.79 6.03 33.30 3.06
1606 1916 3.852471 TTCTGTTCGTTGTCAACATCG 57.148 42.857 15.79 7.17 39.60 3.84
1607 1917 2.816689 TCTGTTCGTTGTCAACATCGT 58.183 42.857 15.79 0.00 39.36 3.73
1608 1918 2.792674 TCTGTTCGTTGTCAACATCGTC 59.207 45.455 15.79 8.26 39.36 4.20
4985 9812 2.295885 GGTGGAGGAATTGATCAGCTG 58.704 52.381 7.63 7.63 0.00 4.24
5344 10172 1.004560 CCTATCATGCGTGGCCGAT 60.005 57.895 5.98 0.00 35.63 4.18
5368 10196 7.672983 TCATGACTCAAGTTTAGATTGGAAC 57.327 36.000 0.00 0.00 0.00 3.62
5434 10270 7.496591 GGATGGTTAAACACACGGATAGAAATA 59.503 37.037 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 35 0.689745 ATTGGGCCATCTTGCTGCAT 60.690 50.000 7.26 0.00 0.00 3.96
43 45 4.197559 TGCTATAAAAGGATTGGGCCAT 57.802 40.909 7.26 0.00 0.00 4.40
59 61 3.327757 TGTCCAGACTTGTCCTTTGCTAT 59.672 43.478 0.00 0.00 0.00 2.97
191 193 0.620556 CACCCAAGCACCTATCCACT 59.379 55.000 0.00 0.00 0.00 4.00
197 199 2.034066 GCAGCACCCAAGCACCTA 59.966 61.111 0.00 0.00 36.85 3.08
198 200 4.982701 GGCAGCACCCAAGCACCT 62.983 66.667 0.00 0.00 36.85 4.00
224 226 6.770785 GGTTAATCATAAGTGGGATGCTTGTA 59.229 38.462 0.00 0.00 0.00 2.41
251 253 4.764308 TGTAGTTGTGGATGCTTGCAATAA 59.236 37.500 0.00 0.00 0.00 1.40
299 301 6.781943 TGGATCCATATGTTTCATGCTATGA 58.218 36.000 11.44 0.00 37.55 2.15
430 432 5.005779 GTCGACTACATGACATTTCACCATC 59.994 44.000 8.70 0.00 33.38 3.51
439 441 3.057806 TGTGAACGTCGACTACATGACAT 60.058 43.478 14.70 0.00 34.78 3.06
527 529 6.668283 TGGGAGAAGTCTTGCTATTAGTAGTT 59.332 38.462 0.00 0.00 0.00 2.24
614 616 6.590656 AACATGGGAATTATTAGGGAGTCA 57.409 37.500 0.00 0.00 0.00 3.41
634 636 5.757988 ACGGCCCCTATTTTCTAATTAACA 58.242 37.500 0.00 0.00 0.00 2.41
863 870 2.491022 TTTTTGTGAACGGGGCCGG 61.491 57.895 9.88 9.88 44.69 6.13
864 871 3.121019 TTTTTGTGAACGGGGCCG 58.879 55.556 0.00 0.00 46.03 6.13
883 890 4.402474 TGAGAAAGAGATTATGCGGTCTCA 59.598 41.667 5.32 0.00 42.57 3.27
890 897 6.941436 AGATGGGATTGAGAAAGAGATTATGC 59.059 38.462 0.00 0.00 0.00 3.14
891 898 8.377034 AGAGATGGGATTGAGAAAGAGATTATG 58.623 37.037 0.00 0.00 0.00 1.90
910 925 2.878406 GGAGTTCGAGAGAGAGAGATGG 59.122 54.545 0.00 0.00 43.69 3.51
985 1042 2.619697 TCCATGCCCAAATTCCTTGA 57.380 45.000 0.00 0.00 37.17 3.02
1018 1075 5.531659 AGTTTGTGAGAAAGAGAGAGACGTA 59.468 40.000 0.00 0.00 0.00 3.57
1036 1093 6.269769 AGGAGAGAAGAAATCTGAGAGTTTGT 59.730 38.462 0.00 0.00 38.96 2.83
1048 1105 5.832539 TTTGAGGTGAGGAGAGAAGAAAT 57.167 39.130 0.00 0.00 0.00 2.17
1050 1107 5.555017 CAATTTGAGGTGAGGAGAGAAGAA 58.445 41.667 0.00 0.00 0.00 2.52
1169 1293 3.324170 CGATAACCTCGTTGAGCGT 57.676 52.632 0.00 0.00 42.56 5.07
1443 1752 3.566523 CGTCGCACCTAATAGGAGAATC 58.433 50.000 14.17 0.09 37.67 2.52
1444 1753 2.296471 CCGTCGCACCTAATAGGAGAAT 59.704 50.000 14.17 0.00 37.67 2.40
1452 1762 1.743995 GGCAACCGTCGCACCTAAT 60.744 57.895 0.00 0.00 0.00 1.73
1455 1765 4.681978 GAGGCAACCGTCGCACCT 62.682 66.667 0.00 0.00 37.17 4.00
1477 1787 5.816449 AAAAATTGGGTGAAAAGCAACTG 57.184 34.783 0.00 0.00 33.59 3.16
1515 1825 5.850557 AACAATGTGATTGAACCAACAGA 57.149 34.783 3.35 0.00 42.83 3.41
1516 1826 6.151691 CCTAACAATGTGATTGAACCAACAG 58.848 40.000 3.35 0.00 42.83 3.16
1517 1827 5.508825 GCCTAACAATGTGATTGAACCAACA 60.509 40.000 3.35 0.00 42.83 3.33
1577 1887 5.231702 TGACAACGAACAGAATAATCGGAA 58.768 37.500 0.00 0.00 40.71 4.30
1581 1891 6.678663 CGATGTTGACAACGAACAGAATAATC 59.321 38.462 13.46 6.00 43.47 1.75
1587 1897 2.792674 GACGATGTTGACAACGAACAGA 59.207 45.455 18.49 0.00 43.47 3.41
1588 1898 2.538037 TGACGATGTTGACAACGAACAG 59.462 45.455 18.49 5.85 43.47 3.16
1589 1899 2.541556 TGACGATGTTGACAACGAACA 58.458 42.857 18.49 14.35 43.47 3.18
1590 1900 3.788434 ATGACGATGTTGACAACGAAC 57.212 42.857 18.49 12.44 43.47 3.95
1591 1901 3.059257 CCAATGACGATGTTGACAACGAA 60.059 43.478 18.49 8.17 43.47 3.85
1592 1902 2.478514 CCAATGACGATGTTGACAACGA 59.521 45.455 18.49 3.70 43.47 3.85
1593 1903 2.223144 ACCAATGACGATGTTGACAACG 59.777 45.455 13.46 11.47 45.70 4.10
1594 1904 3.249799 TGACCAATGACGATGTTGACAAC 59.750 43.478 11.54 11.54 0.00 3.32
1595 1905 3.471680 TGACCAATGACGATGTTGACAA 58.528 40.909 0.00 0.00 0.00 3.18
1596 1906 3.066380 CTGACCAATGACGATGTTGACA 58.934 45.455 0.00 0.00 0.00 3.58
1597 1907 3.325870 TCTGACCAATGACGATGTTGAC 58.674 45.455 0.00 0.00 0.00 3.18
1598 1908 3.676291 TCTGACCAATGACGATGTTGA 57.324 42.857 0.00 0.00 0.00 3.18
1599 1909 4.633126 AGAATCTGACCAATGACGATGTTG 59.367 41.667 0.00 0.00 0.00 3.33
1600 1910 4.836825 AGAATCTGACCAATGACGATGTT 58.163 39.130 0.00 0.00 0.00 2.71
1601 1911 4.437239 GAGAATCTGACCAATGACGATGT 58.563 43.478 0.00 0.00 0.00 3.06
1602 1912 3.806521 GGAGAATCTGACCAATGACGATG 59.193 47.826 0.00 0.00 33.73 3.84
1603 1913 3.708631 AGGAGAATCTGACCAATGACGAT 59.291 43.478 0.00 0.00 33.73 3.73
1604 1914 3.099905 AGGAGAATCTGACCAATGACGA 58.900 45.455 0.00 0.00 33.73 4.20
1605 1915 3.533606 AGGAGAATCTGACCAATGACG 57.466 47.619 0.00 0.00 33.73 4.35
1606 1916 7.158021 CCTAATAGGAGAATCTGACCAATGAC 58.842 42.308 0.00 0.00 37.67 3.06
1607 1917 6.846505 ACCTAATAGGAGAATCTGACCAATGA 59.153 38.462 14.17 0.00 37.67 2.57
1608 1918 6.933521 CACCTAATAGGAGAATCTGACCAATG 59.066 42.308 14.17 0.00 37.67 2.82
5344 10172 7.453393 AGTTCCAATCTAAACTTGAGTCATGA 58.547 34.615 12.65 0.00 31.81 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.