Multiple sequence alignment - TraesCS1A01G194900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G194900 chr1A 100.000 3061 0 0 1698 4758 351885364 351882304 0.000000e+00 5653
1 TraesCS1A01G194900 chr1A 100.000 1393 0 0 1 1393 351887061 351885669 0.000000e+00 2573
2 TraesCS1A01G194900 chr1A 90.805 174 16 0 1 174 396863869 396863696 2.860000e-57 233
3 TraesCS1A01G194900 chr1D 88.526 1717 92 41 2481 4159 279948597 279946948 0.000000e+00 1982
4 TraesCS1A01G194900 chr1D 93.333 1230 49 14 179 1393 279950710 279949499 0.000000e+00 1786
5 TraesCS1A01G194900 chr1D 90.616 682 22 15 1708 2374 279949393 279948739 0.000000e+00 867
6 TraesCS1A01G194900 chr1D 90.306 588 27 16 4168 4742 279946906 279946336 0.000000e+00 743
7 TraesCS1A01G194900 chr1B 91.382 1230 47 28 179 1393 380471177 380469992 0.000000e+00 1629
8 TraesCS1A01G194900 chr1B 90.844 972 53 20 3176 4137 380468446 380467501 0.000000e+00 1269
9 TraesCS1A01G194900 chr1B 88.889 648 35 14 4133 4758 380467394 380466762 0.000000e+00 763
10 TraesCS1A01G194900 chr1B 91.789 341 11 5 1699 2039 380469879 380469556 4.340000e-125 459
11 TraesCS1A01G194900 chr1B 85.981 428 35 15 2481 2907 380469127 380468724 7.310000e-118 435
12 TraesCS1A01G194900 chr1B 96.761 247 3 2 2129 2374 380469508 380469266 1.590000e-109 407
13 TraesCS1A01G194900 chr1B 97.525 202 5 0 2914 3115 380468678 380468477 3.520000e-91 346
14 TraesCS1A01G194900 chr3A 91.860 172 14 0 1 172 539704921 539704750 1.710000e-59 241
15 TraesCS1A01G194900 chr2A 90.164 183 17 1 1 183 735286854 735287035 2.210000e-58 237
16 TraesCS1A01G194900 chr7A 90.503 179 16 1 2 179 545042160 545041982 7.960000e-58 235
17 TraesCS1A01G194900 chr4A 90.055 181 17 1 2 181 484890517 484890337 2.860000e-57 233
18 TraesCS1A01G194900 chr2D 89.247 186 19 1 1 185 481603141 481603326 1.030000e-56 231
19 TraesCS1A01G194900 chr2D 89.560 182 18 1 1 181 440182581 440182762 3.700000e-56 230
20 TraesCS1A01G194900 chr2D 89.071 183 20 0 1 183 36275248 36275430 1.330000e-55 228
21 TraesCS1A01G194900 chr5D 89.560 182 18 1 1 181 440963621 440963802 3.700000e-56 230


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G194900 chr1A 351882304 351887061 4757 True 4113.000000 5653 100.000000 1 4758 2 chr1A.!!$R2 4757
1 TraesCS1A01G194900 chr1D 279946336 279950710 4374 True 1344.500000 1982 90.695250 179 4742 4 chr1D.!!$R1 4563
2 TraesCS1A01G194900 chr1B 380466762 380471177 4415 True 758.285714 1629 91.881571 179 4758 7 chr1B.!!$R1 4579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
970 993 0.239082 CGCTCCGGCATACATACGTA 59.761 55.0 0.00 0.00 38.60 3.57 F
2402 2482 0.031994 TTTCTTTTCAGCGCAAGGGC 59.968 50.0 11.47 0.29 38.28 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2751 2894 0.034756 ATTTGTTTTCTTGCGGGGGC 59.965 50.0 0.00 0.0 0.00 5.80 R
4313 4680 0.323957 TGCTCTGCATGCTTCACTCT 59.676 50.0 20.33 0.0 31.71 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.748732 TGTAAAGGTGATGGGACCCA 58.251 50.000 17.73 17.73 36.56 4.51
23 24 2.025416 TGTAAAGGTGATGGGACCCATG 60.025 50.000 31.39 0.00 45.26 3.66
24 25 0.324645 AAAGGTGATGGGACCCATGC 60.325 55.000 31.39 21.14 45.26 4.06
25 26 1.508667 AAGGTGATGGGACCCATGCA 61.509 55.000 31.39 22.86 45.26 3.96
26 27 1.000233 GGTGATGGGACCCATGCAA 60.000 57.895 31.39 13.08 45.26 4.08
27 28 0.614415 GGTGATGGGACCCATGCAAA 60.614 55.000 31.39 10.49 45.26 3.68
28 29 1.265236 GTGATGGGACCCATGCAAAA 58.735 50.000 31.39 7.95 45.26 2.44
29 30 1.622811 GTGATGGGACCCATGCAAAAA 59.377 47.619 31.39 6.16 45.26 1.94
66 67 9.961265 ATAAGTTTTAAGTTAGGTTGAAGCAAC 57.039 29.630 0.00 1.82 42.89 4.17
67 68 7.640597 AGTTTTAAGTTAGGTTGAAGCAACT 57.359 32.000 9.80 2.15 43.14 3.16
68 69 8.063200 AGTTTTAAGTTAGGTTGAAGCAACTT 57.937 30.769 20.09 20.09 43.14 2.66
69 70 9.181061 AGTTTTAAGTTAGGTTGAAGCAACTTA 57.819 29.630 18.77 18.77 43.14 2.24
70 71 9.961265 GTTTTAAGTTAGGTTGAAGCAACTTAT 57.039 29.630 21.11 9.27 43.14 1.73
74 75 8.919777 AAGTTAGGTTGAAGCAACTTATAACT 57.080 30.769 17.05 18.75 42.31 2.24
75 76 8.919777 AGTTAGGTTGAAGCAACTTATAACTT 57.080 30.769 18.75 6.72 43.14 2.66
100 101 9.675464 TTATAAGTTGGGGTGACTTATAAGTTG 57.325 33.333 18.96 0.00 46.80 3.16
101 102 5.836024 AGTTGGGGTGACTTATAAGTTGA 57.164 39.130 18.96 6.85 39.88 3.18
102 103 6.195600 AGTTGGGGTGACTTATAAGTTGAA 57.804 37.500 18.96 6.11 39.88 2.69
103 104 6.790319 AGTTGGGGTGACTTATAAGTTGAAT 58.210 36.000 18.96 0.00 39.88 2.57
104 105 6.884836 AGTTGGGGTGACTTATAAGTTGAATC 59.115 38.462 18.96 8.68 39.88 2.52
105 106 6.636454 TGGGGTGACTTATAAGTTGAATCT 57.364 37.500 18.96 0.00 39.88 2.40
106 107 6.414732 TGGGGTGACTTATAAGTTGAATCTG 58.585 40.000 18.96 0.00 39.88 2.90
107 108 6.012858 TGGGGTGACTTATAAGTTGAATCTGT 60.013 38.462 18.96 0.00 39.88 3.41
108 109 6.884836 GGGGTGACTTATAAGTTGAATCTGTT 59.115 38.462 18.96 0.00 39.88 3.16
109 110 7.393515 GGGGTGACTTATAAGTTGAATCTGTTT 59.606 37.037 18.96 0.00 39.88 2.83
110 111 8.237267 GGGTGACTTATAAGTTGAATCTGTTTG 58.763 37.037 18.96 0.00 39.88 2.93
111 112 8.237267 GGTGACTTATAAGTTGAATCTGTTTGG 58.763 37.037 18.96 0.00 39.88 3.28
112 113 7.750903 GTGACTTATAAGTTGAATCTGTTTGGC 59.249 37.037 18.96 2.46 39.88 4.52
113 114 7.446931 TGACTTATAAGTTGAATCTGTTTGGCA 59.553 33.333 18.96 4.92 39.88 4.92
114 115 8.177119 ACTTATAAGTTGAATCTGTTTGGCAA 57.823 30.769 12.50 0.00 35.21 4.52
115 116 8.637986 ACTTATAAGTTGAATCTGTTTGGCAAA 58.362 29.630 12.50 8.93 35.21 3.68
116 117 9.474920 CTTATAAGTTGAATCTGTTTGGCAAAA 57.525 29.630 15.29 0.00 0.00 2.44
117 118 9.995003 TTATAAGTTGAATCTGTTTGGCAAAAT 57.005 25.926 15.29 1.71 0.00 1.82
119 120 9.995003 ATAAGTTGAATCTGTTTGGCAAAATAA 57.005 25.926 15.29 3.07 0.00 1.40
120 121 7.951530 AGTTGAATCTGTTTGGCAAAATAAG 57.048 32.000 15.29 12.47 0.00 1.73
121 122 7.500141 AGTTGAATCTGTTTGGCAAAATAAGT 58.500 30.769 15.29 1.81 0.00 2.24
122 123 7.653311 AGTTGAATCTGTTTGGCAAAATAAGTC 59.347 33.333 15.29 11.38 0.00 3.01
123 124 7.048629 TGAATCTGTTTGGCAAAATAAGTCA 57.951 32.000 15.29 13.67 0.00 3.41
124 125 7.669427 TGAATCTGTTTGGCAAAATAAGTCAT 58.331 30.769 15.29 1.41 0.00 3.06
125 126 8.149647 TGAATCTGTTTGGCAAAATAAGTCATT 58.850 29.630 15.29 9.08 0.00 2.57
126 127 8.907222 AATCTGTTTGGCAAAATAAGTCATTT 57.093 26.923 15.29 2.18 38.54 2.32
127 128 8.907222 ATCTGTTTGGCAAAATAAGTCATTTT 57.093 26.923 15.29 0.00 45.72 1.82
128 129 8.729805 TCTGTTTGGCAAAATAAGTCATTTTT 57.270 26.923 15.29 0.00 42.93 1.94
177 178 9.986833 GATTATTTATTTGAAACCAAACATGCC 57.013 29.630 0.00 0.00 36.48 4.40
194 195 7.578310 AACATGCCTTAAGAGTATCGTAGTA 57.422 36.000 3.36 0.00 42.67 1.82
195 196 7.762588 ACATGCCTTAAGAGTATCGTAGTAT 57.237 36.000 3.36 0.00 42.67 2.12
196 197 8.859236 ACATGCCTTAAGAGTATCGTAGTATA 57.141 34.615 3.36 0.00 42.67 1.47
197 198 8.728833 ACATGCCTTAAGAGTATCGTAGTATAC 58.271 37.037 3.36 0.00 42.67 1.47
198 199 8.948145 CATGCCTTAAGAGTATCGTAGTATACT 58.052 37.037 10.87 10.87 43.72 2.12
227 228 0.757561 GAGGTAGAGGCCCTCCTGAC 60.758 65.000 7.26 3.25 44.46 3.51
361 368 1.512926 CCACTCTTCTCACCAAACCG 58.487 55.000 0.00 0.00 0.00 4.44
371 378 2.678336 CTCACCAAACCGAGCTAAATCC 59.322 50.000 0.00 0.00 0.00 3.01
495 502 2.435693 GGAGGGAGACGGATGGGTG 61.436 68.421 0.00 0.00 0.00 4.61
496 503 3.083997 AGGGAGACGGATGGGTGC 61.084 66.667 0.00 0.00 0.00 5.01
497 504 3.399181 GGGAGACGGATGGGTGCA 61.399 66.667 0.00 0.00 0.00 4.57
498 505 2.125106 GGAGACGGATGGGTGCAC 60.125 66.667 8.80 8.80 0.00 4.57
499 506 2.509336 GAGACGGATGGGTGCACG 60.509 66.667 11.45 0.00 0.00 5.34
749 770 3.474570 GGATGCGGCTGACCCTCT 61.475 66.667 0.00 0.00 0.00 3.69
826 847 2.125106 CTGCCCGCTACAACTCCC 60.125 66.667 0.00 0.00 0.00 4.30
903 924 3.375299 CCATCACCAGTAAAGCAGTAAGC 59.625 47.826 0.00 0.00 46.19 3.09
965 988 2.421739 GGACGCTCCGGCATACAT 59.578 61.111 0.00 0.00 36.10 2.29
966 989 1.663739 GGACGCTCCGGCATACATA 59.336 57.895 0.00 0.00 36.10 2.29
967 990 0.666577 GGACGCTCCGGCATACATAC 60.667 60.000 0.00 0.00 36.10 2.39
968 991 1.002250 GACGCTCCGGCATACATACG 61.002 60.000 0.00 0.00 38.60 3.06
969 992 1.007734 CGCTCCGGCATACATACGT 60.008 57.895 0.00 0.00 38.60 3.57
970 993 0.239082 CGCTCCGGCATACATACGTA 59.761 55.000 0.00 0.00 38.60 3.57
971 994 1.694639 GCTCCGGCATACATACGTAC 58.305 55.000 0.00 0.00 38.54 3.67
972 995 1.268899 GCTCCGGCATACATACGTACT 59.731 52.381 0.00 0.00 38.54 2.73
980 1003 4.147653 GGCATACATACGTACTTACAAGCG 59.852 45.833 0.00 0.00 0.00 4.68
981 1004 4.147653 GCATACATACGTACTTACAAGCGG 59.852 45.833 0.00 0.00 0.00 5.52
1126 1150 4.367023 GCTACACCGTCCACGCCA 62.367 66.667 0.00 0.00 38.18 5.69
1228 1252 2.973148 GACCCCTTCGACTACCACT 58.027 57.895 0.00 0.00 0.00 4.00
1339 1363 1.550072 CCAATCACCAATCACAACCCC 59.450 52.381 0.00 0.00 0.00 4.95
1344 1368 0.698818 ACCAATCACAACCCCTCCTC 59.301 55.000 0.00 0.00 0.00 3.71
1365 1390 1.282653 CCTTCCTTTCCTCCCTCCCC 61.283 65.000 0.00 0.00 0.00 4.81
1742 1775 2.857592 CCATGTTGCAGTGGCTAATC 57.142 50.000 2.46 0.00 41.91 1.75
1752 1785 3.804036 CAGTGGCTAATCGGTTGGATAA 58.196 45.455 0.00 0.00 34.08 1.75
1753 1786 3.809832 CAGTGGCTAATCGGTTGGATAAG 59.190 47.826 0.00 0.00 34.08 1.73
1754 1787 3.454812 AGTGGCTAATCGGTTGGATAAGT 59.545 43.478 0.00 0.00 34.08 2.24
1755 1788 4.652421 AGTGGCTAATCGGTTGGATAAGTA 59.348 41.667 0.00 0.00 34.08 2.24
1782 1815 1.461127 CAGAGAAAACACTGGCGCTAC 59.539 52.381 7.64 0.00 0.00 3.58
1831 1869 2.359531 AGCTAGTCGTTGAGCATCTACC 59.640 50.000 7.69 0.00 41.36 3.18
1842 1888 6.019479 CGTTGAGCATCTACCACTATTTCTTC 60.019 42.308 0.00 0.00 37.57 2.87
1895 1941 1.227497 CAGCTCATCCGCTTCCTCC 60.227 63.158 0.00 0.00 38.41 4.30
1962 2008 1.073722 CTGCTCCAAACCTCTGGCA 59.926 57.895 0.00 0.00 36.32 4.92
1963 2009 0.959372 CTGCTCCAAACCTCTGGCAG 60.959 60.000 8.58 8.58 40.52 4.85
2035 2081 1.152963 AGGCTTCACCACACACACC 60.153 57.895 0.00 0.00 43.14 4.16
2036 2082 1.453015 GGCTTCACCACACACACCA 60.453 57.895 0.00 0.00 38.86 4.17
2037 2083 1.724582 GGCTTCACCACACACACCAC 61.725 60.000 0.00 0.00 38.86 4.16
2038 2084 1.029408 GCTTCACCACACACACCACA 61.029 55.000 0.00 0.00 0.00 4.17
2039 2085 0.732571 CTTCACCACACACACCACAC 59.267 55.000 0.00 0.00 0.00 3.82
2040 2086 0.036875 TTCACCACACACACCACACA 59.963 50.000 0.00 0.00 0.00 3.72
2042 2088 1.102154 CACCACACACACCACACAAT 58.898 50.000 0.00 0.00 0.00 2.71
2122 2168 3.134081 TGGGTGCTAGTAGCTGGTTAATC 59.866 47.826 22.34 1.79 42.97 1.75
2150 2196 6.692849 ATATTAATCTGAGTGGCTGATGGA 57.307 37.500 0.00 0.00 35.62 3.41
2151 2197 5.579753 ATTAATCTGAGTGGCTGATGGAT 57.420 39.130 0.00 0.00 35.62 3.41
2152 2198 2.932855 ATCTGAGTGGCTGATGGATG 57.067 50.000 0.00 0.00 34.34 3.51
2153 2199 0.835276 TCTGAGTGGCTGATGGATGG 59.165 55.000 0.00 0.00 0.00 3.51
2347 2393 0.689623 ACCTCAACCTCTGCAGGAAG 59.310 55.000 15.13 4.48 43.65 3.46
2368 2414 4.291540 GCGCAAGGTAATCAATCAATCA 57.708 40.909 0.30 0.00 38.28 2.57
2372 2452 4.736793 GCAAGGTAATCAATCAATCAAGCG 59.263 41.667 0.00 0.00 0.00 4.68
2374 2454 4.202441 AGGTAATCAATCAATCAAGCGCT 58.798 39.130 2.64 2.64 0.00 5.92
2391 2471 2.314122 CGCTGCAGCTTCTTTCTTTTC 58.686 47.619 34.22 3.10 39.32 2.29
2392 2472 2.287188 CGCTGCAGCTTCTTTCTTTTCA 60.287 45.455 34.22 0.00 39.32 2.69
2394 2474 3.306818 CTGCAGCTTCTTTCTTTTCAGC 58.693 45.455 0.00 0.00 0.00 4.26
2395 2475 2.287188 TGCAGCTTCTTTCTTTTCAGCG 60.287 45.455 0.00 0.00 35.53 5.18
2396 2476 2.314122 CAGCTTCTTTCTTTTCAGCGC 58.686 47.619 0.00 0.00 35.53 5.92
2397 2477 1.949525 AGCTTCTTTCTTTTCAGCGCA 59.050 42.857 11.47 0.00 35.53 6.09
2398 2478 2.358898 AGCTTCTTTCTTTTCAGCGCAA 59.641 40.909 11.47 0.00 35.53 4.85
2399 2479 2.723143 GCTTCTTTCTTTTCAGCGCAAG 59.277 45.455 11.47 4.21 43.44 4.01
2400 2480 3.303406 CTTCTTTCTTTTCAGCGCAAGG 58.697 45.455 11.47 0.00 38.28 3.61
2401 2481 1.608590 TCTTTCTTTTCAGCGCAAGGG 59.391 47.619 11.47 0.00 38.28 3.95
2402 2482 0.031994 TTTCTTTTCAGCGCAAGGGC 59.968 50.000 11.47 0.29 38.28 5.19
2403 2483 1.106351 TTCTTTTCAGCGCAAGGGCA 61.106 50.000 11.47 0.00 41.24 5.36
2404 2484 1.080974 CTTTTCAGCGCAAGGGCAG 60.081 57.895 11.47 3.52 41.24 4.85
2405 2485 1.518056 CTTTTCAGCGCAAGGGCAGA 61.518 55.000 11.47 6.01 41.24 4.26
2406 2486 1.106351 TTTTCAGCGCAAGGGCAGAA 61.106 50.000 11.47 11.78 41.24 3.02
2407 2487 0.895100 TTTCAGCGCAAGGGCAGAAT 60.895 50.000 11.47 0.00 38.08 2.40
2408 2488 1.308069 TTCAGCGCAAGGGCAGAATC 61.308 55.000 11.47 0.00 41.24 2.52
2409 2489 1.748122 CAGCGCAAGGGCAGAATCT 60.748 57.895 11.47 0.00 41.24 2.40
2410 2490 1.001641 AGCGCAAGGGCAGAATCTT 60.002 52.632 11.47 0.00 41.24 2.40
2411 2491 1.138247 GCGCAAGGGCAGAATCTTG 59.862 57.895 0.30 0.00 42.19 3.02
2412 2492 1.589716 GCGCAAGGGCAGAATCTTGT 61.590 55.000 0.30 0.00 41.56 3.16
2413 2493 0.883833 CGCAAGGGCAGAATCTTGTT 59.116 50.000 0.00 0.00 41.56 2.83
2414 2494 2.083774 CGCAAGGGCAGAATCTTGTTA 58.916 47.619 0.00 0.00 41.56 2.41
2415 2495 2.159517 CGCAAGGGCAGAATCTTGTTAC 60.160 50.000 0.00 0.00 41.56 2.50
2416 2496 2.159517 GCAAGGGCAGAATCTTGTTACG 60.160 50.000 0.00 0.00 41.56 3.18
2417 2497 3.334691 CAAGGGCAGAATCTTGTTACGA 58.665 45.455 0.00 0.00 36.54 3.43
2418 2498 3.695830 AGGGCAGAATCTTGTTACGAA 57.304 42.857 0.00 0.00 0.00 3.85
2419 2499 4.015872 AGGGCAGAATCTTGTTACGAAA 57.984 40.909 0.00 0.00 0.00 3.46
2420 2500 4.589908 AGGGCAGAATCTTGTTACGAAAT 58.410 39.130 0.00 0.00 0.00 2.17
2421 2501 4.636206 AGGGCAGAATCTTGTTACGAAATC 59.364 41.667 0.00 0.00 0.00 2.17
2422 2502 4.201920 GGGCAGAATCTTGTTACGAAATCC 60.202 45.833 0.00 0.00 0.00 3.01
2423 2503 4.394920 GGCAGAATCTTGTTACGAAATCCA 59.605 41.667 0.00 0.00 0.00 3.41
2424 2504 5.106317 GGCAGAATCTTGTTACGAAATCCAA 60.106 40.000 0.00 0.00 0.00 3.53
2428 2508 7.323656 CAGAATCTTGTTACGAAATCCAACAAC 59.676 37.037 0.00 0.00 37.27 3.32
2431 2511 7.416154 TCTTGTTACGAAATCCAACAACTAG 57.584 36.000 0.00 0.00 37.27 2.57
2451 2531 2.159099 AGTGAGACAGTCTTGTTGCGAA 60.159 45.455 4.05 0.00 37.76 4.70
2452 2532 2.219674 GTGAGACAGTCTTGTTGCGAAG 59.780 50.000 4.05 0.00 37.76 3.79
2465 2545 2.488355 CGAAGCCCAGCAAGCATG 59.512 61.111 0.00 0.00 0.00 4.06
2467 2547 1.509923 GAAGCCCAGCAAGCATGTC 59.490 57.895 0.00 0.00 0.00 3.06
2468 2548 0.964358 GAAGCCCAGCAAGCATGTCT 60.964 55.000 0.00 0.00 0.00 3.41
2469 2549 0.541296 AAGCCCAGCAAGCATGTCTT 60.541 50.000 0.00 0.00 34.78 3.01
2494 2606 5.581085 GCTACGAATCAATCCAACAACTAGT 59.419 40.000 0.00 0.00 0.00 2.57
2497 2609 5.995282 ACGAATCAATCCAACAACTAGTGAA 59.005 36.000 0.00 0.00 0.00 3.18
2501 2613 6.618287 TCAATCCAACAACTAGTGAAACAG 57.382 37.500 0.00 0.00 41.43 3.16
2502 2614 5.008613 TCAATCCAACAACTAGTGAAACAGC 59.991 40.000 0.00 0.00 41.43 4.40
2507 2619 2.618709 ACAACTAGTGAAACAGCCTTGC 59.381 45.455 0.00 0.00 41.43 4.01
2562 2674 2.668212 CCCCGAGAAAGCAACGCA 60.668 61.111 0.00 0.00 0.00 5.24
2635 2778 1.736126 CAGCACTGCATTACCAGTCAG 59.264 52.381 3.30 0.00 43.85 3.51
2645 2788 4.392138 GCATTACCAGTCAGAAACCTGTAC 59.608 45.833 0.00 0.00 33.49 2.90
2655 2798 3.869246 CAGAAACCTGTACGTGTCAAACT 59.131 43.478 0.00 0.00 0.00 2.66
2656 2799 4.025979 CAGAAACCTGTACGTGTCAAACTC 60.026 45.833 0.00 0.00 0.00 3.01
2657 2800 3.530265 AACCTGTACGTGTCAAACTCA 57.470 42.857 0.00 0.00 0.00 3.41
2658 2801 3.530265 ACCTGTACGTGTCAAACTCAA 57.470 42.857 0.00 0.00 0.00 3.02
2659 2802 3.864243 ACCTGTACGTGTCAAACTCAAA 58.136 40.909 0.00 0.00 0.00 2.69
2660 2803 3.619929 ACCTGTACGTGTCAAACTCAAAC 59.380 43.478 0.00 0.00 0.00 2.93
2661 2804 3.869246 CCTGTACGTGTCAAACTCAAACT 59.131 43.478 0.00 0.00 0.00 2.66
2662 2805 4.331717 CCTGTACGTGTCAAACTCAAACTT 59.668 41.667 0.00 0.00 0.00 2.66
2691 2834 3.707102 AGTGGATGAGGCTAGTAAGAACC 59.293 47.826 0.00 0.00 0.00 3.62
2732 2875 7.710676 AGATTAAGACACAGAAAGAGAGCTA 57.289 36.000 0.00 0.00 0.00 3.32
2733 2876 7.543756 AGATTAAGACACAGAAAGAGAGCTAC 58.456 38.462 0.00 0.00 0.00 3.58
2734 2877 6.902771 TTAAGACACAGAAAGAGAGCTACT 57.097 37.500 0.00 0.00 0.00 2.57
2744 2887 9.593134 ACAGAAAGAGAGCTACTACAAATAATG 57.407 33.333 0.00 0.00 0.00 1.90
2775 2918 2.986479 CCCGCAAGAAAACAAATACTGC 59.014 45.455 0.00 0.00 43.02 4.40
2781 2924 7.240674 CGCAAGAAAACAAATACTGCTGTATA 58.759 34.615 15.66 0.00 37.79 1.47
2782 2925 7.910162 CGCAAGAAAACAAATACTGCTGTATAT 59.090 33.333 15.66 5.02 37.79 0.86
2783 2926 9.013490 GCAAGAAAACAAATACTGCTGTATATG 57.987 33.333 15.66 6.44 38.33 1.78
2829 2972 4.828939 ACACAAAGATCATCCTTGCTTTGA 59.171 37.500 17.80 0.00 46.11 2.69
2830 2973 5.302568 ACACAAAGATCATCCTTGCTTTGAA 59.697 36.000 17.80 0.00 46.11 2.69
2833 2976 8.195436 CACAAAGATCATCCTTGCTTTGAATAT 58.805 33.333 17.80 0.00 46.11 1.28
2945 3127 6.169094 GTCCTCTGTTTCTGAATTCTGATGA 58.831 40.000 14.89 10.27 0.00 2.92
3115 3304 2.158813 ACACACACACCCTTTAGGACAG 60.159 50.000 0.00 0.00 39.89 3.51
3117 3306 1.136828 ACACACCCTTTAGGACAGCA 58.863 50.000 0.00 0.00 39.89 4.41
3118 3307 1.072331 ACACACCCTTTAGGACAGCAG 59.928 52.381 0.00 0.00 39.89 4.24
3119 3308 0.036875 ACACCCTTTAGGACAGCAGC 59.963 55.000 0.00 0.00 39.89 5.25
3120 3309 1.021390 CACCCTTTAGGACAGCAGCG 61.021 60.000 0.00 0.00 39.89 5.18
3121 3310 2.109126 CCCTTTAGGACAGCAGCGC 61.109 63.158 0.00 0.00 38.24 5.92
3122 3311 1.375908 CCTTTAGGACAGCAGCGCA 60.376 57.895 11.47 0.00 37.39 6.09
3124 3313 1.089920 CTTTAGGACAGCAGCGCAAT 58.910 50.000 11.47 0.00 0.00 3.56
3125 3314 1.063174 CTTTAGGACAGCAGCGCAATC 59.937 52.381 11.47 0.00 0.00 2.67
3126 3315 0.036483 TTAGGACAGCAGCGCAATCA 60.036 50.000 11.47 0.00 0.00 2.57
3127 3316 0.740868 TAGGACAGCAGCGCAATCAC 60.741 55.000 11.47 0.00 0.00 3.06
3129 3318 1.575922 GACAGCAGCGCAATCACAA 59.424 52.632 11.47 0.00 0.00 3.33
3130 3319 0.169672 GACAGCAGCGCAATCACAAT 59.830 50.000 11.47 0.00 0.00 2.71
3131 3320 1.398041 GACAGCAGCGCAATCACAATA 59.602 47.619 11.47 0.00 0.00 1.90
3132 3321 1.399440 ACAGCAGCGCAATCACAATAG 59.601 47.619 11.47 0.00 0.00 1.73
3133 3322 1.399440 CAGCAGCGCAATCACAATAGT 59.601 47.619 11.47 0.00 0.00 2.12
3134 3323 2.086869 AGCAGCGCAATCACAATAGTT 58.913 42.857 11.47 0.00 0.00 2.24
3135 3324 3.063861 CAGCAGCGCAATCACAATAGTTA 59.936 43.478 11.47 0.00 0.00 2.24
3136 3325 3.879295 AGCAGCGCAATCACAATAGTTAT 59.121 39.130 11.47 0.00 0.00 1.89
3137 3326 4.336433 AGCAGCGCAATCACAATAGTTATT 59.664 37.500 11.47 0.00 0.00 1.40
3138 3327 5.527214 AGCAGCGCAATCACAATAGTTATTA 59.473 36.000 11.47 0.00 0.00 0.98
3139 3328 5.621228 GCAGCGCAATCACAATAGTTATTAC 59.379 40.000 11.47 0.00 0.00 1.89
3140 3329 6.511767 GCAGCGCAATCACAATAGTTATTACT 60.512 38.462 11.47 0.00 38.44 2.24
3141 3330 6.847792 CAGCGCAATCACAATAGTTATTACTG 59.152 38.462 11.47 0.00 35.78 2.74
3142 3331 6.017934 AGCGCAATCACAATAGTTATTACTGG 60.018 38.462 11.47 0.00 35.78 4.00
3143 3332 6.018262 GCGCAATCACAATAGTTATTACTGGA 60.018 38.462 0.30 0.00 35.78 3.86
3144 3333 7.466725 GCGCAATCACAATAGTTATTACTGGAA 60.467 37.037 0.30 0.00 35.78 3.53
3150 3339 9.431887 TCACAATAGTTATTACTGGAAAGACAC 57.568 33.333 0.00 0.00 35.78 3.67
3151 3340 9.214957 CACAATAGTTATTACTGGAAAGACACA 57.785 33.333 0.00 0.00 35.78 3.72
3152 3341 9.216117 ACAATAGTTATTACTGGAAAGACACAC 57.784 33.333 0.00 0.00 35.78 3.82
3153 3342 9.214957 CAATAGTTATTACTGGAAAGACACACA 57.785 33.333 0.00 0.00 35.78 3.72
3154 3343 9.959721 AATAGTTATTACTGGAAAGACACACAT 57.040 29.630 0.00 0.00 35.78 3.21
3155 3344 9.959721 ATAGTTATTACTGGAAAGACACACATT 57.040 29.630 0.00 0.00 35.78 2.71
3156 3345 8.691661 AGTTATTACTGGAAAGACACACATTT 57.308 30.769 0.00 0.00 31.99 2.32
3157 3346 9.131791 AGTTATTACTGGAAAGACACACATTTT 57.868 29.630 0.00 0.00 31.99 1.82
3160 3349 8.691661 ATTACTGGAAAGACACACATTTTACT 57.308 30.769 0.00 0.00 0.00 2.24
3161 3350 8.514330 TTACTGGAAAGACACACATTTTACTT 57.486 30.769 0.00 0.00 0.00 2.24
3162 3351 6.795399 ACTGGAAAGACACACATTTTACTTG 58.205 36.000 0.00 0.00 0.00 3.16
3163 3352 6.601613 ACTGGAAAGACACACATTTTACTTGA 59.398 34.615 0.00 0.00 0.00 3.02
3164 3353 6.791303 TGGAAAGACACACATTTTACTTGAC 58.209 36.000 0.00 0.00 0.00 3.18
3165 3354 5.907391 GGAAAGACACACATTTTACTTGACG 59.093 40.000 0.00 0.00 0.00 4.35
3166 3355 6.431198 AAAGACACACATTTTACTTGACGT 57.569 33.333 0.00 0.00 0.00 4.34
3167 3356 7.254522 GGAAAGACACACATTTTACTTGACGTA 60.255 37.037 0.00 0.00 0.00 3.57
3168 3357 7.724305 AAGACACACATTTTACTTGACGTAT 57.276 32.000 0.00 0.00 0.00 3.06
3169 3358 8.821147 AAGACACACATTTTACTTGACGTATA 57.179 30.769 0.00 0.00 0.00 1.47
3170 3359 8.462143 AGACACACATTTTACTTGACGTATAG 57.538 34.615 0.00 0.00 0.00 1.31
3171 3360 7.057149 ACACACATTTTACTTGACGTATAGC 57.943 36.000 0.00 0.00 0.00 2.97
3172 3361 6.872020 ACACACATTTTACTTGACGTATAGCT 59.128 34.615 0.00 0.00 0.00 3.32
3173 3362 7.386848 ACACACATTTTACTTGACGTATAGCTT 59.613 33.333 0.00 0.00 0.00 3.74
3174 3363 7.898309 CACACATTTTACTTGACGTATAGCTTC 59.102 37.037 0.00 0.00 0.00 3.86
3183 3372 8.597662 ACTTGACGTATAGCTTCTTGTTTTAA 57.402 30.769 0.00 0.00 0.00 1.52
3221 3410 1.741525 GTTGGTGCAGTTGTGGCAT 59.258 52.632 0.00 0.00 44.11 4.40
3224 3413 2.429571 GTGCAGTTGTGGCATGCG 60.430 61.111 12.44 0.00 44.11 4.73
3558 3747 4.415332 CGCCGAGGTACACACGCT 62.415 66.667 0.00 0.00 0.00 5.07
3561 3750 1.585006 CCGAGGTACACACGCTTCT 59.415 57.895 0.00 0.00 0.00 2.85
3567 3756 4.683832 GAGGTACACACGCTTCTATGAAT 58.316 43.478 0.00 0.00 0.00 2.57
3569 3758 6.216801 AGGTACACACGCTTCTATGAATTA 57.783 37.500 0.00 0.00 0.00 1.40
3570 3759 6.273825 AGGTACACACGCTTCTATGAATTAG 58.726 40.000 0.00 0.00 0.00 1.73
3571 3760 6.040878 GGTACACACGCTTCTATGAATTAGT 58.959 40.000 0.00 0.00 0.00 2.24
3572 3761 7.067859 AGGTACACACGCTTCTATGAATTAGTA 59.932 37.037 0.00 0.00 0.00 1.82
3574 3763 6.864342 ACACACGCTTCTATGAATTAGTACT 58.136 36.000 0.00 0.00 0.00 2.73
3575 3764 7.993101 ACACACGCTTCTATGAATTAGTACTA 58.007 34.615 0.00 0.00 0.00 1.82
3576 3765 8.129840 ACACACGCTTCTATGAATTAGTACTAG 58.870 37.037 2.23 0.00 0.00 2.57
3577 3766 7.113684 CACACGCTTCTATGAATTAGTACTAGC 59.886 40.741 2.23 0.00 0.00 3.42
3578 3767 7.139392 CACGCTTCTATGAATTAGTACTAGCA 58.861 38.462 2.23 3.96 0.00 3.49
3579 3768 7.810282 CACGCTTCTATGAATTAGTACTAGCAT 59.190 37.037 15.06 15.06 0.00 3.79
3580 3769 8.361139 ACGCTTCTATGAATTAGTACTAGCATT 58.639 33.333 15.60 9.10 0.00 3.56
3581 3770 9.197694 CGCTTCTATGAATTAGTACTAGCATTT 57.802 33.333 15.60 5.26 0.00 2.32
3611 3800 8.023128 TCAGCTCAAAAATTCTAAGAAAATCCG 58.977 33.333 0.00 0.00 0.00 4.18
3616 3805 8.634444 TCAAAAATTCTAAGAAAATCCGGTGAA 58.366 29.630 0.00 0.00 0.00 3.18
3618 3807 7.761038 AAATTCTAAGAAAATCCGGTGAAGT 57.239 32.000 0.00 0.00 0.00 3.01
3619 3808 6.743575 ATTCTAAGAAAATCCGGTGAAGTG 57.256 37.500 0.00 0.00 0.00 3.16
3620 3809 5.223449 TCTAAGAAAATCCGGTGAAGTGT 57.777 39.130 0.00 0.00 0.00 3.55
3621 3810 5.235516 TCTAAGAAAATCCGGTGAAGTGTC 58.764 41.667 0.00 0.00 0.00 3.67
3623 3812 4.086706 AGAAAATCCGGTGAAGTGTCTT 57.913 40.909 0.00 0.00 0.00 3.01
3624 3813 3.815401 AGAAAATCCGGTGAAGTGTCTTG 59.185 43.478 0.00 0.00 0.00 3.02
3625 3814 2.930826 AATCCGGTGAAGTGTCTTGT 57.069 45.000 0.00 0.00 0.00 3.16
3626 3815 4.345859 AAATCCGGTGAAGTGTCTTGTA 57.654 40.909 0.00 0.00 0.00 2.41
3653 3848 4.141733 TGACTGACCTGTGATGAACTTTGA 60.142 41.667 0.00 0.00 0.00 2.69
3654 3849 4.978099 ACTGACCTGTGATGAACTTTGAT 58.022 39.130 0.00 0.00 0.00 2.57
3664 3859 6.154445 GTGATGAACTTTGATTTGCAGTGAT 58.846 36.000 0.00 0.00 0.00 3.06
3682 3877 1.487976 GATGAGCTGAAGGTGATCCCA 59.512 52.381 0.00 0.00 31.51 4.37
3685 3880 1.003580 GAGCTGAAGGTGATCCCACAA 59.996 52.381 0.00 0.00 44.93 3.33
3758 3953 4.775780 CCATATACGGGGACTTGGATTAGA 59.224 45.833 0.00 0.00 0.00 2.10
3761 3956 2.829023 ACGGGGACTTGGATTAGAGAA 58.171 47.619 0.00 0.00 0.00 2.87
3764 3959 3.388024 CGGGGACTTGGATTAGAGAATCA 59.612 47.826 0.51 0.00 42.95 2.57
3765 3960 4.709250 GGGGACTTGGATTAGAGAATCAC 58.291 47.826 0.51 0.00 42.95 3.06
3767 3962 5.602978 GGGGACTTGGATTAGAGAATCACTA 59.397 44.000 0.51 0.00 42.95 2.74
3768 3963 6.239458 GGGGACTTGGATTAGAGAATCACTAG 60.239 46.154 0.51 0.00 42.95 2.57
3775 3970 9.605275 TTGGATTAGAGAATCACTAGTTCATTG 57.395 33.333 0.00 0.00 42.95 2.82
3776 3971 8.981659 TGGATTAGAGAATCACTAGTTCATTGA 58.018 33.333 0.00 0.00 42.95 2.57
3913 4110 0.311790 CATGCCGCATGTATTCCACC 59.688 55.000 22.92 0.00 37.12 4.61
3914 4111 0.106769 ATGCCGCATGTATTCCACCA 60.107 50.000 4.68 0.00 0.00 4.17
3915 4112 1.029408 TGCCGCATGTATTCCACCAC 61.029 55.000 0.00 0.00 0.00 4.16
3926 4123 2.409064 TTCCACCACTCTTACCAGGA 57.591 50.000 0.00 0.00 0.00 3.86
3981 4178 8.701895 CAATGTAGTAGTAATCCTTAGGTCCAA 58.298 37.037 0.00 0.00 0.00 3.53
4000 4197 6.220930 GTCCAACAAAAGGGAAAATAAGTCC 58.779 40.000 0.00 0.00 34.34 3.85
4001 4198 5.900123 TCCAACAAAAGGGAAAATAAGTCCA 59.100 36.000 0.00 0.00 36.83 4.02
4011 4208 7.238710 AGGGAAAATAAGTCCACAGTTATGTT 58.761 34.615 0.00 0.00 37.65 2.71
4012 4209 8.387813 AGGGAAAATAAGTCCACAGTTATGTTA 58.612 33.333 0.00 0.00 37.65 2.41
4013 4210 8.456471 GGGAAAATAAGTCCACAGTTATGTTAC 58.544 37.037 0.00 0.00 37.65 2.50
4094 4296 6.864421 AGGGGTGAGATAGATATGAGTTGTA 58.136 40.000 0.00 0.00 0.00 2.41
4135 4448 7.795859 TGAAACTGAAACTTTTGAAAAGCTTG 58.204 30.769 16.96 4.02 0.00 4.01
4149 4462 4.320608 AAAGCTTGGTGTACATGGTTTG 57.679 40.909 0.00 0.00 46.55 2.93
4177 4523 7.542534 AACAACGTCAAGTAAACAAGTGATA 57.457 32.000 0.00 0.00 0.00 2.15
4189 4535 8.850156 AGTAAACAAGTGATAAAAATCAGCTGT 58.150 29.630 14.67 0.00 31.58 4.40
4440 4807 3.330701 ACAGTTCAATCCTAGGCTCCAAA 59.669 43.478 2.96 0.00 0.00 3.28
4441 4808 3.691609 CAGTTCAATCCTAGGCTCCAAAC 59.308 47.826 2.96 4.97 0.00 2.93
4443 4810 1.564348 TCAATCCTAGGCTCCAAACCC 59.436 52.381 2.96 0.00 0.00 4.11
4446 4813 1.928567 CCTAGGCTCCAAACCCCCA 60.929 63.158 0.00 0.00 0.00 4.96
4447 4814 1.289244 CCTAGGCTCCAAACCCCCAT 61.289 60.000 0.00 0.00 0.00 4.00
4448 4815 1.518367 CTAGGCTCCAAACCCCCATA 58.482 55.000 0.00 0.00 0.00 2.74
4449 4816 1.421646 CTAGGCTCCAAACCCCCATAG 59.578 57.143 0.00 0.00 0.00 2.23
4450 4817 0.253630 AGGCTCCAAACCCCCATAGA 60.254 55.000 0.00 0.00 0.00 1.98
4451 4818 0.106669 GGCTCCAAACCCCCATAGAC 60.107 60.000 0.00 0.00 0.00 2.59
4452 4819 0.623723 GCTCCAAACCCCCATAGACA 59.376 55.000 0.00 0.00 0.00 3.41
4468 4836 5.337894 CCATAGACAAGGAGAGAGCAAAAGA 60.338 44.000 0.00 0.00 0.00 2.52
4498 4866 0.033796 ACCATCCCTCACCAGCAATG 60.034 55.000 0.00 0.00 0.00 2.82
4499 4867 1.389609 CCATCCCTCACCAGCAATGC 61.390 60.000 0.00 0.00 0.00 3.56
4500 4868 1.076485 ATCCCTCACCAGCAATGCC 60.076 57.895 0.00 0.00 0.00 4.40
4501 4869 1.866483 ATCCCTCACCAGCAATGCCA 61.866 55.000 0.00 0.00 0.00 4.92
4506 4874 1.064505 CTCACCAGCAATGCCAATACG 59.935 52.381 0.00 0.00 0.00 3.06
4519 4887 0.251916 CAATACGGCTGAGGGGTTGA 59.748 55.000 0.00 0.00 0.00 3.18
4524 4892 0.035056 CGGCTGAGGGGTTGAGATTT 60.035 55.000 0.00 0.00 0.00 2.17
4536 4904 3.072944 GTTGAGATTTCAGCTGCAGACT 58.927 45.455 20.43 11.55 34.15 3.24
4537 4905 3.413846 TGAGATTTCAGCTGCAGACTT 57.586 42.857 20.43 0.00 0.00 3.01
4538 4906 3.072211 TGAGATTTCAGCTGCAGACTTG 58.928 45.455 20.43 12.26 0.00 3.16
4539 4907 6.099004 TTGAGATTTCAGCTGCAGACTTGC 62.099 45.833 20.43 1.38 41.72 4.01
4565 4933 2.557056 GCAGTCTACACACACTCACCTA 59.443 50.000 0.00 0.00 0.00 3.08
4577 4945 5.527582 ACACACTCACCTAAATCTCAACAAC 59.472 40.000 0.00 0.00 0.00 3.32
4580 4948 6.260936 ACACTCACCTAAATCTCAACAACAAG 59.739 38.462 0.00 0.00 0.00 3.16
4581 4949 6.483307 CACTCACCTAAATCTCAACAACAAGA 59.517 38.462 0.00 0.00 0.00 3.02
4582 4950 7.012327 CACTCACCTAAATCTCAACAACAAGAA 59.988 37.037 0.00 0.00 0.00 2.52
4583 4951 7.556275 ACTCACCTAAATCTCAACAACAAGAAA 59.444 33.333 0.00 0.00 0.00 2.52
4584 4952 7.703328 TCACCTAAATCTCAACAACAAGAAAC 58.297 34.615 0.00 0.00 0.00 2.78
4585 4953 7.338196 TCACCTAAATCTCAACAACAAGAAACA 59.662 33.333 0.00 0.00 0.00 2.83
4587 4955 9.349713 ACCTAAATCTCAACAACAAGAAACATA 57.650 29.630 0.00 0.00 0.00 2.29
4592 4960 9.903682 AATCTCAACAACAAGAAACATATTCTG 57.096 29.630 0.00 0.00 0.00 3.02
4716 5084 0.840617 TGGAAACTGTAGCACACCCA 59.159 50.000 0.00 0.00 0.00 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.465832 TGGGTCCCATCACCTTTACATA 58.534 45.455 6.47 0.00 36.57 2.29
1 2 2.283834 TGGGTCCCATCACCTTTACAT 58.716 47.619 6.47 0.00 36.57 2.29
2 3 1.748732 TGGGTCCCATCACCTTTACA 58.251 50.000 6.47 0.00 36.57 2.41
3 4 2.654863 CATGGGTCCCATCACCTTTAC 58.345 52.381 21.49 0.00 43.15 2.01
4 5 1.064017 GCATGGGTCCCATCACCTTTA 60.064 52.381 21.49 0.00 43.15 1.85
5 6 0.324645 GCATGGGTCCCATCACCTTT 60.325 55.000 21.49 0.00 43.15 3.11
6 7 1.307647 GCATGGGTCCCATCACCTT 59.692 57.895 21.49 0.00 43.15 3.50
7 8 1.508667 TTGCATGGGTCCCATCACCT 61.509 55.000 21.49 0.00 43.15 4.00
8 9 0.614415 TTTGCATGGGTCCCATCACC 60.614 55.000 21.49 12.40 43.15 4.02
9 10 1.265236 TTTTGCATGGGTCCCATCAC 58.735 50.000 21.49 16.04 43.15 3.06
10 11 2.021262 TTTTTGCATGGGTCCCATCA 57.979 45.000 21.49 17.75 43.15 3.07
40 41 9.961265 GTTGCTTCAACCTAACTTAAAACTTAT 57.039 29.630 0.00 0.00 38.30 1.73
41 42 9.181061 AGTTGCTTCAACCTAACTTAAAACTTA 57.819 29.630 6.12 0.00 44.49 2.24
42 43 8.063200 AGTTGCTTCAACCTAACTTAAAACTT 57.937 30.769 6.12 0.00 44.49 2.66
43 44 7.640597 AGTTGCTTCAACCTAACTTAAAACT 57.359 32.000 6.12 0.00 44.49 2.66
44 45 9.961265 ATAAGTTGCTTCAACCTAACTTAAAAC 57.039 29.630 11.09 0.00 44.49 2.43
49 50 8.919777 AGTTATAAGTTGCTTCAACCTAACTT 57.080 30.769 15.98 0.00 44.49 2.66
50 51 8.919777 AAGTTATAAGTTGCTTCAACCTAACT 57.080 30.769 4.71 15.98 44.49 2.24
66 67 9.901172 AAGTCACCCCAACTTATAAGTTATAAG 57.099 33.333 29.19 29.19 46.89 1.73
75 76 9.049050 TCAACTTATAAGTCACCCCAACTTATA 57.951 33.333 18.28 10.26 44.28 0.98
76 77 7.924541 TCAACTTATAAGTCACCCCAACTTAT 58.075 34.615 18.28 11.86 46.48 1.73
77 78 7.319052 TCAACTTATAAGTCACCCCAACTTA 57.681 36.000 18.28 0.00 41.91 2.24
78 79 6.195600 TCAACTTATAAGTCACCCCAACTT 57.804 37.500 18.28 0.00 38.57 2.66
79 80 5.836024 TCAACTTATAAGTCACCCCAACT 57.164 39.130 18.28 0.00 38.57 3.16
80 81 6.884836 AGATTCAACTTATAAGTCACCCCAAC 59.115 38.462 18.28 6.31 38.57 3.77
81 82 6.884295 CAGATTCAACTTATAAGTCACCCCAA 59.116 38.462 18.28 6.08 38.57 4.12
82 83 6.012858 ACAGATTCAACTTATAAGTCACCCCA 60.013 38.462 18.28 1.25 38.57 4.96
83 84 6.415573 ACAGATTCAACTTATAAGTCACCCC 58.584 40.000 18.28 8.46 38.57 4.95
84 85 7.923414 AACAGATTCAACTTATAAGTCACCC 57.077 36.000 18.28 7.52 38.57 4.61
85 86 8.237267 CCAAACAGATTCAACTTATAAGTCACC 58.763 37.037 18.28 6.90 38.57 4.02
86 87 7.750903 GCCAAACAGATTCAACTTATAAGTCAC 59.249 37.037 18.28 8.47 38.57 3.67
87 88 7.446931 TGCCAAACAGATTCAACTTATAAGTCA 59.553 33.333 18.28 5.92 38.57 3.41
88 89 7.816640 TGCCAAACAGATTCAACTTATAAGTC 58.183 34.615 18.28 5.93 38.57 3.01
89 90 7.759489 TGCCAAACAGATTCAACTTATAAGT 57.241 32.000 12.50 12.50 42.04 2.24
90 91 9.474920 TTTTGCCAAACAGATTCAACTTATAAG 57.525 29.630 11.05 11.05 0.00 1.73
91 92 9.995003 ATTTTGCCAAACAGATTCAACTTATAA 57.005 25.926 0.00 0.00 0.00 0.98
93 94 9.995003 TTATTTTGCCAAACAGATTCAACTTAT 57.005 25.926 0.00 0.00 0.00 1.73
94 95 9.474920 CTTATTTTGCCAAACAGATTCAACTTA 57.525 29.630 0.00 0.00 0.00 2.24
95 96 7.986889 ACTTATTTTGCCAAACAGATTCAACTT 59.013 29.630 0.00 0.00 0.00 2.66
96 97 7.500141 ACTTATTTTGCCAAACAGATTCAACT 58.500 30.769 0.00 0.00 0.00 3.16
97 98 7.437862 TGACTTATTTTGCCAAACAGATTCAAC 59.562 33.333 0.00 0.00 0.00 3.18
98 99 7.495901 TGACTTATTTTGCCAAACAGATTCAA 58.504 30.769 0.00 0.00 0.00 2.69
99 100 7.048629 TGACTTATTTTGCCAAACAGATTCA 57.951 32.000 0.00 0.00 0.00 2.57
100 101 8.538409 AATGACTTATTTTGCCAAACAGATTC 57.462 30.769 0.00 0.00 0.00 2.52
101 102 8.907222 AAATGACTTATTTTGCCAAACAGATT 57.093 26.923 0.00 0.00 35.47 2.40
102 103 8.907222 AAAATGACTTATTTTGCCAAACAGAT 57.093 26.923 0.00 0.00 44.98 2.90
103 104 8.729805 AAAAATGACTTATTTTGCCAAACAGA 57.270 26.923 0.00 0.00 45.74 3.41
151 152 9.986833 GGCATGTTTGGTTTCAAATAAATAATC 57.013 29.630 0.00 0.00 43.73 1.75
152 153 9.737844 AGGCATGTTTGGTTTCAAATAAATAAT 57.262 25.926 0.00 0.00 43.73 1.28
153 154 9.566432 AAGGCATGTTTGGTTTCAAATAAATAA 57.434 25.926 0.00 0.00 43.73 1.40
155 156 9.566432 TTAAGGCATGTTTGGTTTCAAATAAAT 57.434 25.926 0.00 0.00 43.73 1.40
156 157 8.964476 TTAAGGCATGTTTGGTTTCAAATAAA 57.036 26.923 0.00 0.00 43.73 1.40
157 158 8.424918 TCTTAAGGCATGTTTGGTTTCAAATAA 58.575 29.630 1.85 0.00 43.73 1.40
158 159 7.957002 TCTTAAGGCATGTTTGGTTTCAAATA 58.043 30.769 1.85 0.00 43.73 1.40
159 160 6.825610 TCTTAAGGCATGTTTGGTTTCAAAT 58.174 32.000 1.85 0.00 43.73 2.32
160 161 6.127196 ACTCTTAAGGCATGTTTGGTTTCAAA 60.127 34.615 1.85 0.00 40.23 2.69
161 162 5.362430 ACTCTTAAGGCATGTTTGGTTTCAA 59.638 36.000 1.85 0.00 0.00 2.69
162 163 4.892934 ACTCTTAAGGCATGTTTGGTTTCA 59.107 37.500 1.85 0.00 0.00 2.69
163 164 5.453567 ACTCTTAAGGCATGTTTGGTTTC 57.546 39.130 1.85 0.00 0.00 2.78
164 165 6.128007 CGATACTCTTAAGGCATGTTTGGTTT 60.128 38.462 1.85 0.00 0.00 3.27
165 166 5.354234 CGATACTCTTAAGGCATGTTTGGTT 59.646 40.000 1.85 0.00 0.00 3.67
166 167 4.876107 CGATACTCTTAAGGCATGTTTGGT 59.124 41.667 1.85 0.00 0.00 3.67
167 168 4.876107 ACGATACTCTTAAGGCATGTTTGG 59.124 41.667 1.85 0.00 0.00 3.28
168 169 6.757010 ACTACGATACTCTTAAGGCATGTTTG 59.243 38.462 1.85 0.00 0.00 2.93
169 170 6.875076 ACTACGATACTCTTAAGGCATGTTT 58.125 36.000 1.85 0.00 0.00 2.83
170 171 6.466885 ACTACGATACTCTTAAGGCATGTT 57.533 37.500 1.85 0.00 0.00 2.71
171 172 7.762588 ATACTACGATACTCTTAAGGCATGT 57.237 36.000 1.85 0.26 0.00 3.21
172 173 8.948145 AGTATACTACGATACTCTTAAGGCATG 58.052 37.037 2.75 0.00 38.03 4.06
173 174 8.948145 CAGTATACTACGATACTCTTAAGGCAT 58.052 37.037 4.74 0.00 40.03 4.40
174 175 7.389884 CCAGTATACTACGATACTCTTAAGGCA 59.610 40.741 4.74 0.00 40.03 4.75
175 176 7.148272 CCCAGTATACTACGATACTCTTAAGGC 60.148 44.444 4.74 0.00 40.03 4.35
176 177 7.882271 ACCCAGTATACTACGATACTCTTAAGG 59.118 40.741 4.74 0.00 40.03 2.69
177 178 8.845413 ACCCAGTATACTACGATACTCTTAAG 57.155 38.462 4.74 0.00 40.03 1.85
194 195 5.044698 GCCTCTACCTCTATCTACCCAGTAT 60.045 48.000 0.00 0.00 0.00 2.12
195 196 4.289148 GCCTCTACCTCTATCTACCCAGTA 59.711 50.000 0.00 0.00 0.00 2.74
196 197 3.074836 GCCTCTACCTCTATCTACCCAGT 59.925 52.174 0.00 0.00 0.00 4.00
197 198 3.562609 GGCCTCTACCTCTATCTACCCAG 60.563 56.522 0.00 0.00 0.00 4.45
198 199 2.379226 GGCCTCTACCTCTATCTACCCA 59.621 54.545 0.00 0.00 0.00 4.51
264 265 1.127582 CTTTCTTCTTCTTCGGCAGCG 59.872 52.381 0.00 0.00 0.00 5.18
266 267 2.999355 CCTCTTTCTTCTTCTTCGGCAG 59.001 50.000 0.00 0.00 0.00 4.85
270 271 3.330267 CCACCCTCTTTCTTCTTCTTCG 58.670 50.000 0.00 0.00 0.00 3.79
272 273 2.376855 CCCCACCCTCTTTCTTCTTCTT 59.623 50.000 0.00 0.00 0.00 2.52
273 274 1.988846 CCCCACCCTCTTTCTTCTTCT 59.011 52.381 0.00 0.00 0.00 2.85
320 327 2.832661 TGCGTTGGCCAGCAGTTT 60.833 55.556 20.42 0.00 38.59 2.66
361 368 1.887707 CGGTGGCGGGATTTAGCTC 60.888 63.158 0.00 0.00 0.00 4.09
420 427 2.126307 CCTCACCTGCGACAGACG 60.126 66.667 8.20 0.00 45.66 4.18
424 431 2.786539 GATGCACCTCACCTGCGACA 62.787 60.000 0.00 0.00 37.46 4.35
620 631 2.203625 TTGGCTTGGCTGGGGAAC 60.204 61.111 0.00 0.00 0.00 3.62
721 742 4.481112 CGCATCCAAAGGGCGTGC 62.481 66.667 0.00 0.00 45.27 5.34
826 847 2.203126 GGAGCTGGAGCCGGATTG 60.203 66.667 5.05 0.00 43.38 2.67
903 924 3.508840 GCGGCGGGAGTGGAATTG 61.509 66.667 9.78 0.00 0.00 2.32
957 980 4.147653 CGCTTGTAAGTACGTATGTATGCC 59.852 45.833 0.00 0.00 32.11 4.40
964 987 3.119388 TGCTTCCGCTTGTAAGTACGTAT 60.119 43.478 0.00 0.00 36.97 3.06
965 988 2.228582 TGCTTCCGCTTGTAAGTACGTA 59.771 45.455 0.00 0.00 36.97 3.57
966 989 1.000060 TGCTTCCGCTTGTAAGTACGT 60.000 47.619 0.00 0.00 36.97 3.57
967 990 1.654105 CTGCTTCCGCTTGTAAGTACG 59.346 52.381 0.00 0.00 36.97 3.67
968 991 1.393883 GCTGCTTCCGCTTGTAAGTAC 59.606 52.381 0.00 0.00 36.97 2.73
969 992 1.674817 GGCTGCTTCCGCTTGTAAGTA 60.675 52.381 0.00 0.00 36.97 2.24
970 993 0.955919 GGCTGCTTCCGCTTGTAAGT 60.956 55.000 0.00 0.00 36.97 2.24
971 994 0.955428 TGGCTGCTTCCGCTTGTAAG 60.955 55.000 0.00 0.00 36.97 2.34
972 995 0.955428 CTGGCTGCTTCCGCTTGTAA 60.955 55.000 0.00 0.00 36.97 2.41
980 1003 2.438075 CTGGCTCTGGCTGCTTCC 60.438 66.667 0.00 0.00 38.73 3.46
981 1004 3.132801 GCTGGCTCTGGCTGCTTC 61.133 66.667 13.80 0.00 46.15 3.86
987 1010 3.138798 CACATGGCTGGCTCTGGC 61.139 66.667 2.00 0.00 37.82 4.85
1317 1341 2.896685 GGGTTGTGATTGGTGATTGGAA 59.103 45.455 0.00 0.00 0.00 3.53
1318 1342 2.524306 GGGTTGTGATTGGTGATTGGA 58.476 47.619 0.00 0.00 0.00 3.53
1319 1343 1.550072 GGGGTTGTGATTGGTGATTGG 59.450 52.381 0.00 0.00 0.00 3.16
1339 1363 2.115427 GGAGGAAAGGAAGGAGAGGAG 58.885 57.143 0.00 0.00 0.00 3.69
1344 1368 1.208706 GGAGGGAGGAAAGGAAGGAG 58.791 60.000 0.00 0.00 0.00 3.69
1742 1775 7.265673 TCTCTGAATTCTTACTTATCCAACCG 58.734 38.462 7.05 0.00 0.00 4.44
1752 1785 6.205658 GCCAGTGTTTTCTCTGAATTCTTACT 59.794 38.462 7.05 0.00 42.06 2.24
1753 1786 6.374578 GCCAGTGTTTTCTCTGAATTCTTAC 58.625 40.000 7.05 0.00 42.06 2.34
1754 1787 5.179368 CGCCAGTGTTTTCTCTGAATTCTTA 59.821 40.000 7.05 0.00 42.06 2.10
1755 1788 4.023707 CGCCAGTGTTTTCTCTGAATTCTT 60.024 41.667 7.05 0.00 42.06 2.52
1782 1815 2.809601 GTCGCAGTGGTACGGCAG 60.810 66.667 5.07 0.00 39.28 4.85
1831 1869 5.124617 GCCAAGGAGAAAGGAAGAAATAGTG 59.875 44.000 0.00 0.00 0.00 2.74
1842 1888 1.301677 GCTCACGCCAAGGAGAAAGG 61.302 60.000 0.00 0.00 32.87 3.11
1962 2008 2.444895 CCTAGCGGCTTCTCCCCT 60.445 66.667 8.26 0.00 0.00 4.79
2035 2081 2.221169 ACCAGCTGTGTGTATTGTGTG 58.779 47.619 13.81 0.00 0.00 3.82
2036 2082 2.638480 ACCAGCTGTGTGTATTGTGT 57.362 45.000 13.81 0.00 0.00 3.72
2037 2083 3.141398 AGAACCAGCTGTGTGTATTGTG 58.859 45.455 13.81 0.00 0.00 3.33
2038 2084 3.492102 AGAACCAGCTGTGTGTATTGT 57.508 42.857 13.81 0.00 0.00 2.71
2039 2085 5.643348 TGATTAGAACCAGCTGTGTGTATTG 59.357 40.000 13.81 0.00 0.00 1.90
2040 2086 5.804639 TGATTAGAACCAGCTGTGTGTATT 58.195 37.500 13.81 0.00 0.00 1.89
2042 2088 4.882842 TGATTAGAACCAGCTGTGTGTA 57.117 40.909 13.81 0.00 0.00 2.90
2078 2124 1.312371 GGTCTGCTTAATTGGCGGCA 61.312 55.000 7.97 7.97 36.16 5.69
2079 2125 1.433471 GGTCTGCTTAATTGGCGGC 59.567 57.895 0.00 0.00 36.16 6.53
2080 2126 1.024579 ACGGTCTGCTTAATTGGCGG 61.025 55.000 7.48 7.48 37.41 6.13
2150 2196 1.210204 ATCACCTCCTGCACCACCAT 61.210 55.000 0.00 0.00 0.00 3.55
2151 2197 1.847506 ATCACCTCCTGCACCACCA 60.848 57.895 0.00 0.00 0.00 4.17
2152 2198 1.377725 CATCACCTCCTGCACCACC 60.378 63.158 0.00 0.00 0.00 4.61
2153 2199 1.377725 CCATCACCTCCTGCACCAC 60.378 63.158 0.00 0.00 0.00 4.16
2315 2361 2.154798 TTGAGGTCGCTCCAGTTCCG 62.155 60.000 0.00 0.00 39.02 4.30
2347 2393 4.291540 TGATTGATTGATTACCTTGCGC 57.708 40.909 0.00 0.00 0.00 6.09
2362 2408 2.872557 GCTGCAGCGCTTGATTGA 59.127 55.556 25.23 0.00 0.00 2.57
2372 2452 3.306818 CTGAAAAGAAAGAAGCTGCAGC 58.693 45.455 31.53 31.53 42.49 5.25
2374 2454 2.287188 CGCTGAAAAGAAAGAAGCTGCA 60.287 45.455 1.02 0.00 0.00 4.41
2391 2471 1.310933 AAGATTCTGCCCTTGCGCTG 61.311 55.000 9.73 0.76 41.78 5.18
2392 2472 1.001641 AAGATTCTGCCCTTGCGCT 60.002 52.632 9.73 0.00 41.78 5.92
2394 2474 0.883833 AACAAGATTCTGCCCTTGCG 59.116 50.000 0.00 0.00 42.46 4.85
2395 2475 2.159517 CGTAACAAGATTCTGCCCTTGC 60.160 50.000 0.00 0.00 42.46 4.01
2396 2476 3.334691 TCGTAACAAGATTCTGCCCTTG 58.665 45.455 0.00 0.00 43.84 3.61
2397 2477 3.695830 TCGTAACAAGATTCTGCCCTT 57.304 42.857 0.00 0.00 0.00 3.95
2398 2478 3.695830 TTCGTAACAAGATTCTGCCCT 57.304 42.857 0.00 0.00 0.00 5.19
2399 2479 4.201920 GGATTTCGTAACAAGATTCTGCCC 60.202 45.833 0.00 0.00 0.00 5.36
2400 2480 4.394920 TGGATTTCGTAACAAGATTCTGCC 59.605 41.667 0.00 0.00 0.00 4.85
2401 2481 5.545658 TGGATTTCGTAACAAGATTCTGC 57.454 39.130 0.00 0.00 0.00 4.26
2402 2482 6.898041 TGTTGGATTTCGTAACAAGATTCTG 58.102 36.000 0.00 0.00 31.95 3.02
2403 2483 7.228706 AGTTGTTGGATTTCGTAACAAGATTCT 59.771 33.333 10.23 4.37 42.79 2.40
2404 2484 7.360361 AGTTGTTGGATTTCGTAACAAGATTC 58.640 34.615 10.23 2.81 42.79 2.52
2405 2485 7.272037 AGTTGTTGGATTTCGTAACAAGATT 57.728 32.000 10.23 1.44 42.79 2.40
2406 2486 6.877611 AGTTGTTGGATTTCGTAACAAGAT 57.122 33.333 10.23 3.31 42.79 2.40
2407 2487 6.987992 ACTAGTTGTTGGATTTCGTAACAAGA 59.012 34.615 10.23 4.20 42.79 3.02
2408 2488 7.042321 TCACTAGTTGTTGGATTTCGTAACAAG 60.042 37.037 0.00 4.61 42.79 3.16
2409 2489 6.762187 TCACTAGTTGTTGGATTTCGTAACAA 59.238 34.615 0.00 0.00 40.73 2.83
2410 2490 6.282167 TCACTAGTTGTTGGATTTCGTAACA 58.718 36.000 0.00 0.00 32.93 2.41
2411 2491 6.643770 TCTCACTAGTTGTTGGATTTCGTAAC 59.356 38.462 0.00 0.00 0.00 2.50
2412 2492 6.643770 GTCTCACTAGTTGTTGGATTTCGTAA 59.356 38.462 0.00 0.00 0.00 3.18
2413 2493 6.154445 GTCTCACTAGTTGTTGGATTTCGTA 58.846 40.000 0.00 0.00 0.00 3.43
2414 2494 4.989168 GTCTCACTAGTTGTTGGATTTCGT 59.011 41.667 0.00 0.00 0.00 3.85
2415 2495 4.988540 TGTCTCACTAGTTGTTGGATTTCG 59.011 41.667 0.00 0.00 0.00 3.46
2416 2496 5.992217 ACTGTCTCACTAGTTGTTGGATTTC 59.008 40.000 0.00 0.00 0.00 2.17
2417 2497 5.930135 ACTGTCTCACTAGTTGTTGGATTT 58.070 37.500 0.00 0.00 0.00 2.17
2418 2498 5.305644 AGACTGTCTCACTAGTTGTTGGATT 59.694 40.000 4.06 0.00 0.00 3.01
2419 2499 4.835615 AGACTGTCTCACTAGTTGTTGGAT 59.164 41.667 4.06 0.00 0.00 3.41
2420 2500 4.215908 AGACTGTCTCACTAGTTGTTGGA 58.784 43.478 4.06 0.00 0.00 3.53
2421 2501 4.592485 AGACTGTCTCACTAGTTGTTGG 57.408 45.455 4.06 0.00 0.00 3.77
2422 2502 5.352284 ACAAGACTGTCTCACTAGTTGTTG 58.648 41.667 11.31 4.17 32.12 3.33
2423 2503 5.599999 ACAAGACTGTCTCACTAGTTGTT 57.400 39.130 11.31 0.00 0.00 2.83
2424 2504 5.352284 CAACAAGACTGTCTCACTAGTTGT 58.648 41.667 11.31 6.98 33.45 3.32
2428 2508 2.983136 CGCAACAAGACTGTCTCACTAG 59.017 50.000 11.31 2.24 33.45 2.57
2431 2511 1.852942 TCGCAACAAGACTGTCTCAC 58.147 50.000 11.31 0.00 33.45 3.51
2451 2531 1.076192 AAGACATGCTTGCTGGGCT 59.924 52.632 0.00 0.00 34.93 5.19
2452 2532 1.214589 CAAGACATGCTTGCTGGGC 59.785 57.895 14.20 0.00 46.67 5.36
2464 2544 4.200838 TGGATTGATTCGTAGCAAGACA 57.799 40.909 0.00 0.00 32.43 3.41
2465 2545 4.391830 TGTTGGATTGATTCGTAGCAAGAC 59.608 41.667 0.00 0.00 32.43 3.01
2467 2547 4.944962 TGTTGGATTGATTCGTAGCAAG 57.055 40.909 0.00 0.00 32.43 4.01
2468 2548 4.759693 AGTTGTTGGATTGATTCGTAGCAA 59.240 37.500 0.00 0.00 33.62 3.91
2469 2549 4.323417 AGTTGTTGGATTGATTCGTAGCA 58.677 39.130 0.00 0.00 0.00 3.49
2471 2551 6.811665 TCACTAGTTGTTGGATTGATTCGTAG 59.188 38.462 0.00 0.00 0.00 3.51
2472 2552 6.693466 TCACTAGTTGTTGGATTGATTCGTA 58.307 36.000 0.00 0.00 0.00 3.43
2475 2555 7.648142 TGTTTCACTAGTTGTTGGATTGATTC 58.352 34.615 0.00 0.00 0.00 2.52
2476 2556 7.581213 TGTTTCACTAGTTGTTGGATTGATT 57.419 32.000 0.00 0.00 0.00 2.57
2477 2557 6.294176 GCTGTTTCACTAGTTGTTGGATTGAT 60.294 38.462 0.00 0.00 0.00 2.57
2478 2558 5.008613 GCTGTTTCACTAGTTGTTGGATTGA 59.991 40.000 0.00 0.00 0.00 2.57
2479 2559 5.215160 GCTGTTTCACTAGTTGTTGGATTG 58.785 41.667 0.00 0.00 0.00 2.67
2502 2614 3.058160 CTGGGTTCCGCAGCAAGG 61.058 66.667 0.00 0.00 37.59 3.61
2512 2624 1.266989 CTTTCTTTCCGTGCTGGGTTC 59.733 52.381 0.00 0.00 38.76 3.62
2549 2661 0.110464 GACTGCTGCGTTGCTTTCTC 60.110 55.000 0.00 0.00 0.00 2.87
2562 2674 2.992114 AAGAGCGACGGGACTGCT 60.992 61.111 0.00 0.00 42.73 4.24
2629 2760 3.050619 GACACGTACAGGTTTCTGACTG 58.949 50.000 0.00 0.00 43.49 3.51
2635 2778 3.866910 TGAGTTTGACACGTACAGGTTTC 59.133 43.478 0.00 0.00 0.00 2.78
2645 2788 4.349663 TTGGAAGTTTGAGTTTGACACG 57.650 40.909 0.00 0.00 0.00 4.49
2679 2822 1.472904 GGGAAGCCGGTTCTTACTAGC 60.473 57.143 1.90 0.00 35.25 3.42
2691 2834 4.473643 TTCACAGTTGGGAAGCCG 57.526 55.556 0.00 0.00 31.50 5.52
2734 2877 3.181452 GGGGGCCGACTACATTATTTGTA 60.181 47.826 0.00 0.00 39.87 2.41
2751 2894 0.034756 ATTTGTTTTCTTGCGGGGGC 59.965 50.000 0.00 0.00 0.00 5.80
2781 2924 6.895756 TGGACTAGGATGTGTTACTAGAACAT 59.104 38.462 0.00 0.76 38.03 2.71
2782 2925 6.152323 GTGGACTAGGATGTGTTACTAGAACA 59.848 42.308 0.00 0.00 38.03 3.18
2783 2926 6.152323 TGTGGACTAGGATGTGTTACTAGAAC 59.848 42.308 0.00 0.00 38.03 3.01
2784 2927 6.152323 GTGTGGACTAGGATGTGTTACTAGAA 59.848 42.308 0.00 0.00 38.03 2.10
2785 2928 5.651139 GTGTGGACTAGGATGTGTTACTAGA 59.349 44.000 0.00 0.00 38.03 2.43
2786 2929 5.417894 TGTGTGGACTAGGATGTGTTACTAG 59.582 44.000 0.00 0.00 39.96 2.57
2787 2930 5.326900 TGTGTGGACTAGGATGTGTTACTA 58.673 41.667 0.00 0.00 0.00 1.82
2788 2931 4.157246 TGTGTGGACTAGGATGTGTTACT 58.843 43.478 0.00 0.00 0.00 2.24
2789 2932 4.530710 TGTGTGGACTAGGATGTGTTAC 57.469 45.455 0.00 0.00 0.00 2.50
2863 3006 3.947910 AAAGTGCCATTTGTCCATCTG 57.052 42.857 0.00 0.00 0.00 2.90
2866 3009 6.072563 GCAATTTAAAAGTGCCATTTGTCCAT 60.073 34.615 13.62 0.00 45.96 3.41
2945 3127 3.495100 CCAACAAGTAGGACACTGCTTCT 60.495 47.826 0.00 0.00 44.92 2.85
3115 3304 2.549633 AACTATTGTGATTGCGCTGC 57.450 45.000 9.73 0.00 0.00 5.25
3117 3306 6.017934 CCAGTAATAACTATTGTGATTGCGCT 60.018 38.462 9.73 0.00 35.56 5.92
3118 3307 6.018262 TCCAGTAATAACTATTGTGATTGCGC 60.018 38.462 0.00 0.00 35.56 6.09
3119 3308 7.477144 TCCAGTAATAACTATTGTGATTGCG 57.523 36.000 0.53 0.00 35.56 4.85
3120 3309 9.722056 CTTTCCAGTAATAACTATTGTGATTGC 57.278 33.333 0.53 0.00 33.48 3.56
3124 3313 9.431887 GTGTCTTTCCAGTAATAACTATTGTGA 57.568 33.333 0.00 0.00 33.48 3.58
3125 3314 9.214957 TGTGTCTTTCCAGTAATAACTATTGTG 57.785 33.333 0.00 0.00 33.48 3.33
3126 3315 9.216117 GTGTGTCTTTCCAGTAATAACTATTGT 57.784 33.333 0.00 0.00 33.48 2.71
3127 3316 9.214957 TGTGTGTCTTTCCAGTAATAACTATTG 57.785 33.333 0.00 0.00 33.48 1.90
3129 3318 9.959721 AATGTGTGTCTTTCCAGTAATAACTAT 57.040 29.630 0.00 0.00 33.48 2.12
3130 3319 9.787435 AAATGTGTGTCTTTCCAGTAATAACTA 57.213 29.630 0.00 0.00 33.48 2.24
3131 3320 8.691661 AAATGTGTGTCTTTCCAGTAATAACT 57.308 30.769 0.00 0.00 35.91 2.24
3134 3323 9.787435 AGTAAAATGTGTGTCTTTCCAGTAATA 57.213 29.630 0.00 0.00 0.00 0.98
3135 3324 8.691661 AGTAAAATGTGTGTCTTTCCAGTAAT 57.308 30.769 0.00 0.00 0.00 1.89
3136 3325 8.402472 CAAGTAAAATGTGTGTCTTTCCAGTAA 58.598 33.333 0.00 0.00 0.00 2.24
3137 3326 7.771361 TCAAGTAAAATGTGTGTCTTTCCAGTA 59.229 33.333 0.00 0.00 0.00 2.74
3138 3327 6.601613 TCAAGTAAAATGTGTGTCTTTCCAGT 59.398 34.615 0.00 0.00 0.00 4.00
3139 3328 6.912591 GTCAAGTAAAATGTGTGTCTTTCCAG 59.087 38.462 0.00 0.00 0.00 3.86
3140 3329 6.457663 CGTCAAGTAAAATGTGTGTCTTTCCA 60.458 38.462 0.00 0.00 0.00 3.53
3141 3330 5.907391 CGTCAAGTAAAATGTGTGTCTTTCC 59.093 40.000 0.00 0.00 0.00 3.13
3142 3331 6.483687 ACGTCAAGTAAAATGTGTGTCTTTC 58.516 36.000 0.00 0.00 0.00 2.62
3143 3332 6.431198 ACGTCAAGTAAAATGTGTGTCTTT 57.569 33.333 0.00 0.00 0.00 2.52
3144 3333 7.724305 ATACGTCAAGTAAAATGTGTGTCTT 57.276 32.000 0.00 0.00 39.04 3.01
3147 3336 6.872020 AGCTATACGTCAAGTAAAATGTGTGT 59.128 34.615 0.00 0.00 39.04 3.72
3148 3337 7.290857 AGCTATACGTCAAGTAAAATGTGTG 57.709 36.000 0.00 0.00 39.04 3.82
3149 3338 7.817962 AGAAGCTATACGTCAAGTAAAATGTGT 59.182 33.333 0.00 0.00 39.04 3.72
3150 3339 8.186178 AGAAGCTATACGTCAAGTAAAATGTG 57.814 34.615 0.00 0.00 39.04 3.21
3151 3340 8.656849 CAAGAAGCTATACGTCAAGTAAAATGT 58.343 33.333 0.00 0.00 39.04 2.71
3152 3341 8.656849 ACAAGAAGCTATACGTCAAGTAAAATG 58.343 33.333 0.00 0.00 39.04 2.32
3153 3342 8.773404 ACAAGAAGCTATACGTCAAGTAAAAT 57.227 30.769 0.00 0.00 39.04 1.82
3154 3343 8.597662 AACAAGAAGCTATACGTCAAGTAAAA 57.402 30.769 0.00 0.00 39.04 1.52
3155 3344 8.597662 AAACAAGAAGCTATACGTCAAGTAAA 57.402 30.769 0.00 0.00 39.04 2.01
3156 3345 8.597662 AAAACAAGAAGCTATACGTCAAGTAA 57.402 30.769 0.00 0.00 39.04 2.24
3157 3346 9.695526 TTAAAACAAGAAGCTATACGTCAAGTA 57.304 29.630 0.00 0.00 40.03 2.24
3158 3347 8.597662 TTAAAACAAGAAGCTATACGTCAAGT 57.402 30.769 0.00 0.00 0.00 3.16
3199 3388 2.123468 ACAACTGCACCAACCCCC 60.123 61.111 0.00 0.00 0.00 5.40
3200 3389 2.498056 CCACAACTGCACCAACCCC 61.498 63.158 0.00 0.00 0.00 4.95
3201 3390 3.128375 CCACAACTGCACCAACCC 58.872 61.111 0.00 0.00 0.00 4.11
3209 3398 4.047059 AGCGCATGCCACAACTGC 62.047 61.111 13.15 7.79 44.31 4.40
3224 3413 3.426568 GACAGCGTCTTGGCCAGC 61.427 66.667 5.11 5.97 0.00 4.85
3359 3548 1.939785 GCCGTGCTCGTACATCTCG 60.940 63.158 7.47 0.00 35.01 4.04
3446 3635 2.105128 CAGAGGTAGCGGCCGAAG 59.895 66.667 33.48 0.00 0.00 3.79
3545 3734 3.777465 TCATAGAAGCGTGTGTACCTC 57.223 47.619 0.00 0.00 0.00 3.85
3567 3756 9.884636 TTGAGCTGAAATAAATGCTAGTACTAA 57.115 29.630 3.76 0.00 35.76 2.24
3569 3758 8.792830 TTTGAGCTGAAATAAATGCTAGTACT 57.207 30.769 0.00 0.00 35.76 2.73
3570 3759 9.840427 TTTTTGAGCTGAAATAAATGCTAGTAC 57.160 29.630 0.00 0.00 35.76 2.73
3572 3761 9.933723 AATTTTTGAGCTGAAATAAATGCTAGT 57.066 25.926 0.00 0.00 35.76 2.57
3592 3781 8.638873 ACTTCACCGGATTTTCTTAGAATTTTT 58.361 29.630 9.46 0.00 0.00 1.94
3611 3800 4.021016 AGTCAGGATACAAGACACTTCACC 60.021 45.833 3.71 0.00 43.75 4.02
3616 3805 3.511934 GGTCAGTCAGGATACAAGACACT 59.488 47.826 3.71 0.00 43.75 3.55
3618 3807 3.511540 CAGGTCAGTCAGGATACAAGACA 59.488 47.826 3.71 0.00 43.75 3.41
3619 3808 3.511934 ACAGGTCAGTCAGGATACAAGAC 59.488 47.826 0.00 0.00 42.25 3.01
3620 3809 3.511540 CACAGGTCAGTCAGGATACAAGA 59.488 47.826 0.00 0.00 41.41 3.02
3621 3810 3.511540 TCACAGGTCAGTCAGGATACAAG 59.488 47.826 0.00 0.00 41.41 3.16
3623 3812 3.169512 TCACAGGTCAGTCAGGATACA 57.830 47.619 0.00 0.00 41.41 2.29
3624 3813 3.701542 TCATCACAGGTCAGTCAGGATAC 59.298 47.826 0.00 0.00 0.00 2.24
3625 3814 3.981212 TCATCACAGGTCAGTCAGGATA 58.019 45.455 0.00 0.00 0.00 2.59
3626 3815 2.825223 TCATCACAGGTCAGTCAGGAT 58.175 47.619 0.00 0.00 0.00 3.24
3653 3848 2.753452 CCTTCAGCTCATCACTGCAAAT 59.247 45.455 0.00 0.00 35.04 2.32
3654 3849 2.156917 CCTTCAGCTCATCACTGCAAA 58.843 47.619 0.00 0.00 35.04 3.68
3664 3859 0.615331 GTGGGATCACCTTCAGCTCA 59.385 55.000 0.00 0.00 41.11 4.26
3682 3877 5.009410 CAGCTTCTTGTTCTGAATCCTTTGT 59.991 40.000 0.00 0.00 0.00 2.83
3685 3880 4.978099 TCAGCTTCTTGTTCTGAATCCTT 58.022 39.130 0.00 0.00 34.30 3.36
3764 3959 9.388506 CCTTGAGATGTAAATCAATGAACTAGT 57.611 33.333 0.00 0.00 35.04 2.57
3765 3960 8.834465 CCCTTGAGATGTAAATCAATGAACTAG 58.166 37.037 0.00 0.00 35.04 2.57
3767 3962 6.096001 GCCCTTGAGATGTAAATCAATGAACT 59.904 38.462 0.00 0.00 35.04 3.01
3768 3963 6.127647 TGCCCTTGAGATGTAAATCAATGAAC 60.128 38.462 0.00 0.00 35.04 3.18
3775 3970 3.549794 AGCTGCCCTTGAGATGTAAATC 58.450 45.455 0.00 0.00 0.00 2.17
3776 3971 3.659183 AGCTGCCCTTGAGATGTAAAT 57.341 42.857 0.00 0.00 0.00 1.40
3782 3977 0.327000 ACCCTAGCTGCCCTTGAGAT 60.327 55.000 0.00 0.00 0.00 2.75
3785 3980 1.133809 ACAACCCTAGCTGCCCTTGA 61.134 55.000 0.00 0.00 0.00 3.02
3926 4123 1.565759 TGGCTCAAATGCTCCTACCAT 59.434 47.619 0.00 0.00 0.00 3.55
3932 4129 1.509923 GCACTGGCTCAAATGCTCC 59.490 57.895 0.00 0.00 36.96 4.70
3958 4155 7.184161 TGTTGGACCTAAGGATTACTACTACA 58.816 38.462 0.00 0.00 0.00 2.74
3959 4156 7.651027 TGTTGGACCTAAGGATTACTACTAC 57.349 40.000 0.00 0.00 0.00 2.73
3960 4157 8.669055 TTTGTTGGACCTAAGGATTACTACTA 57.331 34.615 0.00 0.00 0.00 1.82
3961 4158 7.563724 TTTGTTGGACCTAAGGATTACTACT 57.436 36.000 0.00 0.00 0.00 2.57
3981 4178 5.897250 ACTGTGGACTTATTTTCCCTTTTGT 59.103 36.000 0.00 0.00 31.33 2.83
4000 4197 5.932303 ACAAGGCAGTAGTAACATAACTGTG 59.068 40.000 3.89 0.00 42.10 3.66
4001 4198 6.110411 ACAAGGCAGTAGTAACATAACTGT 57.890 37.500 3.89 0.00 42.10 3.55
4131 4333 2.621055 TGTCAAACCATGTACACCAAGC 59.379 45.455 0.00 0.00 0.00 4.01
4135 4448 4.640789 TGTTTGTCAAACCATGTACACC 57.359 40.909 22.60 0.00 40.67 4.16
4149 4462 6.032042 CACTTGTTTACTTGACGTTGTTTGTC 59.968 38.462 0.00 0.00 36.88 3.18
4164 4477 9.118236 GACAGCTGATTTTTATCACTTGTTTAC 57.882 33.333 23.35 0.00 0.00 2.01
4177 4523 9.013229 TGAATATGTAGTTGACAGCTGATTTTT 57.987 29.630 23.35 5.39 42.79 1.94
4306 4673 1.002366 CATGCTTCACTCTACGGTGC 58.998 55.000 0.00 0.00 37.16 5.01
4313 4680 0.323957 TGCTCTGCATGCTTCACTCT 59.676 50.000 20.33 0.00 31.71 3.24
4440 4807 1.651770 TCTCTCCTTGTCTATGGGGGT 59.348 52.381 0.00 0.00 0.00 4.95
4441 4808 2.324541 CTCTCTCCTTGTCTATGGGGG 58.675 57.143 0.00 0.00 0.00 5.40
4443 4810 2.392662 TGCTCTCTCCTTGTCTATGGG 58.607 52.381 0.00 0.00 0.00 4.00
4446 4813 5.719085 TCTCTTTTGCTCTCTCCTTGTCTAT 59.281 40.000 0.00 0.00 0.00 1.98
4447 4814 5.080337 TCTCTTTTGCTCTCTCCTTGTCTA 58.920 41.667 0.00 0.00 0.00 2.59
4448 4815 3.900601 TCTCTTTTGCTCTCTCCTTGTCT 59.099 43.478 0.00 0.00 0.00 3.41
4449 4816 4.244862 CTCTCTTTTGCTCTCTCCTTGTC 58.755 47.826 0.00 0.00 0.00 3.18
4450 4817 3.645687 ACTCTCTTTTGCTCTCTCCTTGT 59.354 43.478 0.00 0.00 0.00 3.16
4451 4818 3.995705 CACTCTCTTTTGCTCTCTCCTTG 59.004 47.826 0.00 0.00 0.00 3.61
4452 4819 3.007831 CCACTCTCTTTTGCTCTCTCCTT 59.992 47.826 0.00 0.00 0.00 3.36
4499 4867 0.748005 CAACCCCTCAGCCGTATTGG 60.748 60.000 0.00 0.00 42.50 3.16
4500 4868 0.251916 TCAACCCCTCAGCCGTATTG 59.748 55.000 0.00 0.00 0.00 1.90
4501 4869 0.541863 CTCAACCCCTCAGCCGTATT 59.458 55.000 0.00 0.00 0.00 1.89
4506 4874 1.004745 TGAAATCTCAACCCCTCAGCC 59.995 52.381 0.00 0.00 0.00 4.85
4508 4876 2.026449 AGCTGAAATCTCAACCCCTCAG 60.026 50.000 0.00 0.00 34.69 3.35
4515 4883 3.072944 AGTCTGCAGCTGAAATCTCAAC 58.927 45.455 20.43 6.04 0.00 3.18
4538 4906 1.261619 GTGTGTGTAGACTGCAACTGC 59.738 52.381 0.00 0.00 42.50 4.40
4539 4907 2.797156 GAGTGTGTGTAGACTGCAACTG 59.203 50.000 1.63 0.00 29.31 3.16
4540 4908 2.430694 TGAGTGTGTGTAGACTGCAACT 59.569 45.455 0.00 0.00 29.31 3.16
4541 4909 2.540101 GTGAGTGTGTGTAGACTGCAAC 59.460 50.000 0.00 0.00 29.31 4.17
4676 5044 1.734655 ACTTTCTGGCTCCCTCAGAA 58.265 50.000 2.80 2.80 45.93 3.02
4716 5084 5.824904 AGAAATTTCATGCGCAGTATCTT 57.175 34.783 18.32 4.59 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.