Multiple sequence alignment - TraesCS1A01G194700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G194700 chr1A 100.000 6067 0 0 1 6067 351864729 351858663 0.000000e+00 11204.0
1 TraesCS1A01G194700 chr1A 93.678 348 22 0 3399 3746 351861160 351860813 6.970000e-144 521.0
2 TraesCS1A01G194700 chr1A 93.678 348 22 0 3570 3917 351861331 351860984 6.970000e-144 521.0
3 TraesCS1A01G194700 chr1A 92.655 177 13 0 3399 3575 351860989 351860813 7.800000e-64 255.0
4 TraesCS1A01G194700 chr1A 92.655 177 13 0 3741 3917 351861331 351861155 7.800000e-64 255.0
5 TraesCS1A01G194700 chr1D 95.007 5388 214 24 693 6067 279940709 279935364 0.000000e+00 8408.0
6 TraesCS1A01G194700 chr1D 93.391 348 23 0 3570 3917 279938011 279937664 3.240000e-142 516.0
7 TraesCS1A01G194700 chr1D 92.241 348 27 0 3399 3746 279937840 279937493 1.520000e-135 494.0
8 TraesCS1A01G194700 chr1D 92.655 177 13 0 3741 3917 279938011 279937835 7.800000e-64 255.0
9 TraesCS1A01G194700 chr1D 90.960 177 16 0 3399 3575 279937669 279937493 7.860000e-59 239.0
10 TraesCS1A01G194700 chr1D 91.270 126 8 3 386 511 279940998 279940876 1.050000e-37 169.0
11 TraesCS1A01G194700 chr1D 91.358 81 6 1 577 656 279940869 279940789 6.430000e-20 110.0
12 TraesCS1A01G194700 chr1B 94.998 4638 196 18 695 5308 380440311 380435686 0.000000e+00 7247.0
13 TraesCS1A01G194700 chr1B 96.336 737 19 5 5337 6067 380435690 380434956 0.000000e+00 1205.0
14 TraesCS1A01G194700 chr1B 92.816 348 25 0 3570 3917 380437594 380437247 7.020000e-139 505.0
15 TraesCS1A01G194700 chr1B 91.954 348 28 0 3399 3746 380437423 380437076 7.070000e-134 488.0
16 TraesCS1A01G194700 chr1B 91.139 316 20 6 384 692 380440689 380440375 7.270000e-114 422.0
17 TraesCS1A01G194700 chr1B 92.090 177 14 0 3741 3917 380437594 380437418 3.630000e-62 250.0
18 TraesCS1A01G194700 chr1B 89.831 177 18 0 3399 3575 380437252 380437076 1.700000e-55 228.0
19 TraesCS1A01G194700 chr1B 87.037 54 7 0 135 188 146168236 146168183 1.830000e-05 62.1
20 TraesCS1A01G194700 chr5A 85.163 337 24 14 1328 1660 465120584 465120270 7.590000e-84 322.0
21 TraesCS1A01G194700 chr5A 87.000 100 6 1 1020 1112 465120818 465120719 8.320000e-19 106.0
22 TraesCS1A01G194700 chr3A 74.731 186 27 13 201 384 497117816 497117649 1.410000e-06 65.8
23 TraesCS1A01G194700 chr3A 86.792 53 6 1 201 253 497206950 497206899 2.360000e-04 58.4
24 TraesCS1A01G194700 chr6B 88.889 45 4 1 1290 1333 712236825 712236869 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G194700 chr1A 351858663 351864729 6066 True 2551.200000 11204 94.533200 1 6067 5 chr1A.!!$R1 6066
1 TraesCS1A01G194700 chr1D 279935364 279940998 5634 True 1455.857143 8408 92.411714 386 6067 7 chr1D.!!$R1 5681
2 TraesCS1A01G194700 chr1B 380434956 380440689 5733 True 1477.857143 7247 92.737714 384 6067 7 chr1B.!!$R2 5683
3 TraesCS1A01G194700 chr5A 465120270 465120818 548 True 214.000000 322 86.081500 1020 1660 2 chr5A.!!$R1 640

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
114 115 0.032815 TTCATCGGTTGAGTGCGTGA 59.967 50.0 0.00 0.0 35.27 4.35 F
128 129 0.109319 GCGTGATCCGTGCCAAAATT 60.109 50.0 5.66 0.0 39.32 1.82 F
894 984 0.250234 TCTTCACCATCGCCTCCTTG 59.750 55.0 0.00 0.0 0.00 3.61 F
2698 2812 0.109272 GAACAGGCGACTCGACATCA 60.109 55.0 7.14 0.0 40.21 3.07 F
2983 3097 0.250640 CCTGGCAAAGCAGACTGAGT 60.251 55.0 6.65 0.0 0.00 3.41 F
4365 4479 0.249955 TCCGCAAGATGATGTGCTCA 59.750 50.0 0.00 0.0 38.66 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1266 1370 0.033796 AATCCGTCGGAGGGAGTACA 60.034 55.000 22.36 1.89 35.39 2.90 R
1749 1863 0.447801 AAATCATTCACGAGGCGCAC 59.552 50.000 10.83 0.96 0.00 5.34 R
2829 2943 0.687354 GAAGCCTCACCTTGTCTCCA 59.313 55.000 0.00 0.00 0.00 3.86 R
3996 4110 0.835941 GGAGCATGGTGTCCATCTCT 59.164 55.000 0.00 11.21 43.15 3.10 R
4464 4578 1.142667 TCATGTTTCACCTGCCTGACA 59.857 47.619 0.00 0.00 0.00 3.58 R
5188 5307 1.362237 TCAAAGGCCCCTTGGATGAAT 59.638 47.619 13.74 0.00 36.26 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.870069 ATCACCATGCAAAGGCCA 57.130 50.000 5.01 0.00 40.13 5.36
18 19 3.070115 ATCACCATGCAAAGGCCAA 57.930 47.368 5.01 0.00 40.13 4.52
19 20 1.575419 ATCACCATGCAAAGGCCAAT 58.425 45.000 5.01 0.00 40.13 3.16
20 21 0.609151 TCACCATGCAAAGGCCAATG 59.391 50.000 5.01 4.12 40.13 2.82
21 22 0.609151 CACCATGCAAAGGCCAATGA 59.391 50.000 5.01 0.00 40.13 2.57
22 23 1.208535 CACCATGCAAAGGCCAATGAT 59.791 47.619 5.01 0.00 40.13 2.45
23 24 2.431419 CACCATGCAAAGGCCAATGATA 59.569 45.455 5.01 0.00 40.13 2.15
24 25 3.106054 ACCATGCAAAGGCCAATGATAA 58.894 40.909 5.01 0.00 40.13 1.75
25 26 3.712733 ACCATGCAAAGGCCAATGATAAT 59.287 39.130 5.01 0.00 40.13 1.28
26 27 4.900652 ACCATGCAAAGGCCAATGATAATA 59.099 37.500 5.01 0.00 40.13 0.98
27 28 5.366186 ACCATGCAAAGGCCAATGATAATAA 59.634 36.000 5.01 0.00 40.13 1.40
28 29 6.043474 ACCATGCAAAGGCCAATGATAATAAT 59.957 34.615 5.01 0.00 40.13 1.28
29 30 6.370442 CCATGCAAAGGCCAATGATAATAATG 59.630 38.462 5.01 2.16 40.13 1.90
30 31 6.482898 TGCAAAGGCCAATGATAATAATGT 57.517 33.333 5.01 0.00 40.13 2.71
31 32 6.887013 TGCAAAGGCCAATGATAATAATGTT 58.113 32.000 5.01 0.00 40.13 2.71
32 33 7.337167 TGCAAAGGCCAATGATAATAATGTTT 58.663 30.769 5.01 0.00 40.13 2.83
33 34 7.495279 TGCAAAGGCCAATGATAATAATGTTTC 59.505 33.333 5.01 0.00 40.13 2.78
34 35 7.712205 GCAAAGGCCAATGATAATAATGTTTCT 59.288 33.333 5.01 0.00 0.00 2.52
52 53 8.942338 ATGTTTCTATATTCTTCTTACGCACA 57.058 30.769 0.00 0.00 0.00 4.57
53 54 8.766000 TGTTTCTATATTCTTCTTACGCACAA 57.234 30.769 0.00 0.00 0.00 3.33
54 55 9.210329 TGTTTCTATATTCTTCTTACGCACAAA 57.790 29.630 0.00 0.00 0.00 2.83
55 56 9.690434 GTTTCTATATTCTTCTTACGCACAAAG 57.310 33.333 0.00 0.00 0.00 2.77
56 57 9.647797 TTTCTATATTCTTCTTACGCACAAAGA 57.352 29.630 0.00 0.00 0.00 2.52
57 58 9.647797 TTCTATATTCTTCTTACGCACAAAGAA 57.352 29.630 6.23 6.23 40.78 2.52
58 59 9.647797 TCTATATTCTTCTTACGCACAAAGAAA 57.352 29.630 7.45 0.00 41.21 2.52
62 63 7.724305 TTCTTCTTACGCACAAAGAAATAGT 57.276 32.000 6.58 0.00 41.21 2.12
63 64 8.821147 TTCTTCTTACGCACAAAGAAATAGTA 57.179 30.769 6.58 0.00 41.21 1.82
64 65 8.997621 TCTTCTTACGCACAAAGAAATAGTAT 57.002 30.769 6.58 0.00 41.21 2.12
65 66 9.431887 TCTTCTTACGCACAAAGAAATAGTATT 57.568 29.630 6.58 0.00 41.21 1.89
66 67 9.690434 CTTCTTACGCACAAAGAAATAGTATTC 57.310 33.333 0.00 0.00 41.21 1.75
67 68 8.193250 TCTTACGCACAAAGAAATAGTATTCC 57.807 34.615 0.00 0.00 30.15 3.01
68 69 7.820386 TCTTACGCACAAAGAAATAGTATTCCA 59.180 33.333 0.00 0.00 30.15 3.53
69 70 6.422776 ACGCACAAAGAAATAGTATTCCAG 57.577 37.500 0.00 0.00 0.00 3.86
70 71 5.354234 ACGCACAAAGAAATAGTATTCCAGG 59.646 40.000 0.00 0.00 0.00 4.45
71 72 5.584649 CGCACAAAGAAATAGTATTCCAGGA 59.415 40.000 0.00 0.00 0.00 3.86
72 73 6.238211 CGCACAAAGAAATAGTATTCCAGGAG 60.238 42.308 0.00 0.00 0.00 3.69
73 74 6.458888 GCACAAAGAAATAGTATTCCAGGAGC 60.459 42.308 0.00 0.00 0.00 4.70
74 75 6.599244 CACAAAGAAATAGTATTCCAGGAGCA 59.401 38.462 0.00 0.00 0.00 4.26
75 76 6.599638 ACAAAGAAATAGTATTCCAGGAGCAC 59.400 38.462 0.00 0.00 0.00 4.40
76 77 5.957771 AGAAATAGTATTCCAGGAGCACA 57.042 39.130 0.00 0.00 0.00 4.57
77 78 6.313519 AGAAATAGTATTCCAGGAGCACAA 57.686 37.500 0.00 0.00 0.00 3.33
78 79 6.721318 AGAAATAGTATTCCAGGAGCACAAA 58.279 36.000 0.00 0.00 0.00 2.83
79 80 7.175104 AGAAATAGTATTCCAGGAGCACAAAA 58.825 34.615 0.00 0.00 0.00 2.44
80 81 7.337942 AGAAATAGTATTCCAGGAGCACAAAAG 59.662 37.037 0.00 0.00 0.00 2.27
81 82 3.084786 AGTATTCCAGGAGCACAAAAGC 58.915 45.455 5.53 0.00 0.00 3.51
82 83 1.260544 ATTCCAGGAGCACAAAAGCC 58.739 50.000 0.00 0.00 34.23 4.35
83 84 0.827507 TTCCAGGAGCACAAAAGCCC 60.828 55.000 0.00 0.00 34.23 5.19
84 85 1.228675 CCAGGAGCACAAAAGCCCT 60.229 57.895 0.00 0.00 36.16 5.19
85 86 0.829182 CCAGGAGCACAAAAGCCCTT 60.829 55.000 0.00 0.00 34.36 3.95
86 87 0.316204 CAGGAGCACAAAAGCCCTTG 59.684 55.000 0.00 0.00 34.36 3.61
87 88 1.005748 GGAGCACAAAAGCCCTTGC 60.006 57.895 0.00 0.00 34.23 4.01
97 98 3.105659 GCCCTTGCTCGCAGATTC 58.894 61.111 0.00 0.00 33.89 2.52
98 99 1.746615 GCCCTTGCTCGCAGATTCA 60.747 57.895 0.00 0.00 33.89 2.57
99 100 1.099879 GCCCTTGCTCGCAGATTCAT 61.100 55.000 0.00 0.00 33.89 2.57
100 101 0.942962 CCCTTGCTCGCAGATTCATC 59.057 55.000 0.00 0.00 33.89 2.92
101 102 0.580578 CCTTGCTCGCAGATTCATCG 59.419 55.000 0.00 0.00 33.89 3.84
102 103 0.580578 CTTGCTCGCAGATTCATCGG 59.419 55.000 0.00 0.00 33.89 4.18
103 104 0.108186 TTGCTCGCAGATTCATCGGT 60.108 50.000 0.00 0.00 33.89 4.69
104 105 0.108186 TGCTCGCAGATTCATCGGTT 60.108 50.000 0.00 0.00 33.89 4.44
105 106 0.302890 GCTCGCAGATTCATCGGTTG 59.697 55.000 0.00 0.00 33.89 3.77
106 107 1.926561 CTCGCAGATTCATCGGTTGA 58.073 50.000 0.00 0.00 33.89 3.18
107 108 1.857217 CTCGCAGATTCATCGGTTGAG 59.143 52.381 0.00 0.00 35.27 3.02
108 109 1.204704 TCGCAGATTCATCGGTTGAGT 59.795 47.619 0.00 0.00 35.27 3.41
109 110 1.325640 CGCAGATTCATCGGTTGAGTG 59.674 52.381 0.00 0.00 35.27 3.51
110 111 1.063174 GCAGATTCATCGGTTGAGTGC 59.937 52.381 5.11 5.11 35.27 4.40
111 112 1.325640 CAGATTCATCGGTTGAGTGCG 59.674 52.381 0.00 0.00 35.27 5.34
112 113 1.066858 AGATTCATCGGTTGAGTGCGT 60.067 47.619 0.00 0.00 35.27 5.24
113 114 1.061131 GATTCATCGGTTGAGTGCGTG 59.939 52.381 0.00 0.00 35.27 5.34
114 115 0.032815 TTCATCGGTTGAGTGCGTGA 59.967 50.000 0.00 0.00 35.27 4.35
115 116 0.246360 TCATCGGTTGAGTGCGTGAT 59.754 50.000 0.00 0.00 0.00 3.06
116 117 0.647410 CATCGGTTGAGTGCGTGATC 59.353 55.000 0.00 0.00 0.00 2.92
117 118 0.460284 ATCGGTTGAGTGCGTGATCC 60.460 55.000 0.00 0.00 0.00 3.36
118 119 2.444624 CGGTTGAGTGCGTGATCCG 61.445 63.158 0.00 0.00 40.40 4.18
119 120 1.374252 GGTTGAGTGCGTGATCCGT 60.374 57.895 5.66 0.00 39.32 4.69
120 121 1.626654 GGTTGAGTGCGTGATCCGTG 61.627 60.000 5.66 0.00 39.32 4.94
121 122 2.027073 TTGAGTGCGTGATCCGTGC 61.027 57.895 5.66 0.53 39.32 5.34
122 123 3.188786 GAGTGCGTGATCCGTGCC 61.189 66.667 5.66 0.00 39.32 5.01
123 124 3.932580 GAGTGCGTGATCCGTGCCA 62.933 63.158 5.66 0.00 39.32 4.92
124 125 3.047280 GTGCGTGATCCGTGCCAA 61.047 61.111 5.66 0.00 39.32 4.52
125 126 2.281139 TGCGTGATCCGTGCCAAA 60.281 55.556 5.66 0.00 39.32 3.28
126 127 1.894282 TGCGTGATCCGTGCCAAAA 60.894 52.632 5.66 0.00 39.32 2.44
127 128 1.240641 TGCGTGATCCGTGCCAAAAT 61.241 50.000 5.66 0.00 39.32 1.82
128 129 0.109319 GCGTGATCCGTGCCAAAATT 60.109 50.000 5.66 0.00 39.32 1.82
129 130 1.668628 GCGTGATCCGTGCCAAAATTT 60.669 47.619 5.66 0.00 39.32 1.82
130 131 2.414824 GCGTGATCCGTGCCAAAATTTA 60.415 45.455 0.00 0.00 39.32 1.40
131 132 3.425404 CGTGATCCGTGCCAAAATTTAG 58.575 45.455 0.00 0.00 0.00 1.85
132 133 3.126171 CGTGATCCGTGCCAAAATTTAGA 59.874 43.478 0.00 0.00 0.00 2.10
133 134 4.662145 GTGATCCGTGCCAAAATTTAGAG 58.338 43.478 0.00 0.00 0.00 2.43
134 135 3.128589 TGATCCGTGCCAAAATTTAGAGC 59.871 43.478 0.00 0.00 0.00 4.09
135 136 2.509569 TCCGTGCCAAAATTTAGAGCA 58.490 42.857 5.79 5.79 0.00 4.26
136 137 3.088532 TCCGTGCCAAAATTTAGAGCAT 58.911 40.909 11.46 0.00 35.62 3.79
137 138 3.509575 TCCGTGCCAAAATTTAGAGCATT 59.490 39.130 11.46 0.00 35.62 3.56
138 139 4.021544 TCCGTGCCAAAATTTAGAGCATTT 60.022 37.500 11.46 0.00 35.62 2.32
139 140 4.091800 CCGTGCCAAAATTTAGAGCATTTG 59.908 41.667 11.46 6.49 35.62 2.32
146 147 7.894376 CAAAATTTAGAGCATTTGGATGTGT 57.106 32.000 0.00 0.00 35.63 3.72
147 148 7.735500 CAAAATTTAGAGCATTTGGATGTGTG 58.264 34.615 0.00 0.00 35.63 3.82
148 149 6.839124 AATTTAGAGCATTTGGATGTGTGA 57.161 33.333 0.00 0.00 35.63 3.58
149 150 5.885230 TTTAGAGCATTTGGATGTGTGAG 57.115 39.130 0.00 0.00 35.63 3.51
150 151 3.430042 AGAGCATTTGGATGTGTGAGT 57.570 42.857 0.00 0.00 35.63 3.41
151 152 4.558226 AGAGCATTTGGATGTGTGAGTA 57.442 40.909 0.00 0.00 35.63 2.59
152 153 5.108187 AGAGCATTTGGATGTGTGAGTAT 57.892 39.130 0.00 0.00 35.63 2.12
153 154 5.121811 AGAGCATTTGGATGTGTGAGTATC 58.878 41.667 0.00 0.00 35.63 2.24
154 155 5.104610 AGAGCATTTGGATGTGTGAGTATCT 60.105 40.000 0.00 0.00 35.63 1.98
155 156 5.121811 AGCATTTGGATGTGTGAGTATCTC 58.878 41.667 0.00 0.00 35.63 2.75
156 157 5.104610 AGCATTTGGATGTGTGAGTATCTCT 60.105 40.000 0.00 0.00 35.63 3.10
157 158 5.236047 GCATTTGGATGTGTGAGTATCTCTC 59.764 44.000 0.00 0.00 38.29 3.20
158 159 7.127647 GCATTTGGATGTGTGAGTATCTCTCA 61.128 42.308 0.00 0.00 41.56 3.27
159 160 8.845261 GCATTTGGATGTGTGAGTATCTCTCAG 61.845 44.444 0.00 0.00 42.85 3.35
188 189 9.533253 AAAAAGATAAATTTGAGGTGTGTGAAG 57.467 29.630 0.00 0.00 0.00 3.02
189 190 8.463930 AAAGATAAATTTGAGGTGTGTGAAGA 57.536 30.769 0.00 0.00 0.00 2.87
190 191 8.463930 AAGATAAATTTGAGGTGTGTGAAGAA 57.536 30.769 0.00 0.00 0.00 2.52
191 192 8.103948 AGATAAATTTGAGGTGTGTGAAGAAG 57.896 34.615 0.00 0.00 0.00 2.85
192 193 7.721399 AGATAAATTTGAGGTGTGTGAAGAAGT 59.279 33.333 0.00 0.00 0.00 3.01
193 194 6.530019 AAATTTGAGGTGTGTGAAGAAGTT 57.470 33.333 0.00 0.00 0.00 2.66
194 195 6.530019 AATTTGAGGTGTGTGAAGAAGTTT 57.470 33.333 0.00 0.00 0.00 2.66
195 196 7.639113 AATTTGAGGTGTGTGAAGAAGTTTA 57.361 32.000 0.00 0.00 0.00 2.01
196 197 7.823745 ATTTGAGGTGTGTGAAGAAGTTTAT 57.176 32.000 0.00 0.00 0.00 1.40
197 198 7.639113 TTTGAGGTGTGTGAAGAAGTTTATT 57.361 32.000 0.00 0.00 0.00 1.40
198 199 6.618287 TGAGGTGTGTGAAGAAGTTTATTG 57.382 37.500 0.00 0.00 0.00 1.90
199 200 5.008613 TGAGGTGTGTGAAGAAGTTTATTGC 59.991 40.000 0.00 0.00 0.00 3.56
200 201 5.133221 AGGTGTGTGAAGAAGTTTATTGCT 58.867 37.500 0.00 0.00 0.00 3.91
201 202 5.594317 AGGTGTGTGAAGAAGTTTATTGCTT 59.406 36.000 0.00 0.00 0.00 3.91
202 203 5.687285 GGTGTGTGAAGAAGTTTATTGCTTG 59.313 40.000 0.00 0.00 0.00 4.01
203 204 5.687285 GTGTGTGAAGAAGTTTATTGCTTGG 59.313 40.000 0.00 0.00 0.00 3.61
204 205 5.592282 TGTGTGAAGAAGTTTATTGCTTGGA 59.408 36.000 0.00 0.00 0.00 3.53
205 206 5.915196 GTGTGAAGAAGTTTATTGCTTGGAC 59.085 40.000 0.00 0.00 0.00 4.02
206 207 5.009610 TGTGAAGAAGTTTATTGCTTGGACC 59.990 40.000 0.00 0.00 0.00 4.46
207 208 4.522789 TGAAGAAGTTTATTGCTTGGACCC 59.477 41.667 0.00 0.00 0.00 4.46
208 209 4.112634 AGAAGTTTATTGCTTGGACCCA 57.887 40.909 0.00 0.00 0.00 4.51
209 210 4.677182 AGAAGTTTATTGCTTGGACCCAT 58.323 39.130 0.00 0.00 0.00 4.00
210 211 5.086621 AGAAGTTTATTGCTTGGACCCATT 58.913 37.500 0.00 0.00 0.00 3.16
211 212 5.543790 AGAAGTTTATTGCTTGGACCCATTT 59.456 36.000 0.00 0.00 0.00 2.32
212 213 5.823861 AGTTTATTGCTTGGACCCATTTT 57.176 34.783 0.00 0.00 0.00 1.82
213 214 6.186420 AGTTTATTGCTTGGACCCATTTTT 57.814 33.333 0.00 0.00 0.00 1.94
243 244 6.734104 AGAACTACTCAGATGTTCAAATGC 57.266 37.500 13.89 0.00 41.56 3.56
244 245 6.471146 AGAACTACTCAGATGTTCAAATGCT 58.529 36.000 13.89 0.00 41.56 3.79
245 246 6.939163 AGAACTACTCAGATGTTCAAATGCTT 59.061 34.615 13.89 0.00 41.56 3.91
246 247 7.446625 AGAACTACTCAGATGTTCAAATGCTTT 59.553 33.333 13.89 0.00 41.56 3.51
247 248 6.906659 ACTACTCAGATGTTCAAATGCTTTG 58.093 36.000 3.17 3.17 41.96 2.77
257 258 3.987547 TCAAATGCTTTGAAATTCGGCA 58.012 36.364 9.59 9.59 45.94 5.69
258 259 3.740321 TCAAATGCTTTGAAATTCGGCAC 59.260 39.130 9.42 0.00 45.94 5.01
278 279 2.936928 CACTTCATGCACTCAGCCA 58.063 52.632 0.00 0.00 44.83 4.75
279 280 1.460504 CACTTCATGCACTCAGCCAT 58.539 50.000 0.00 0.00 44.83 4.40
280 281 1.400846 CACTTCATGCACTCAGCCATC 59.599 52.381 0.00 0.00 44.83 3.51
281 282 1.281287 ACTTCATGCACTCAGCCATCT 59.719 47.619 0.00 0.00 44.83 2.90
282 283 2.290768 ACTTCATGCACTCAGCCATCTT 60.291 45.455 0.00 0.00 44.83 2.40
283 284 2.502142 TCATGCACTCAGCCATCTTT 57.498 45.000 0.00 0.00 44.83 2.52
284 285 2.362736 TCATGCACTCAGCCATCTTTC 58.637 47.619 0.00 0.00 44.83 2.62
285 286 2.026542 TCATGCACTCAGCCATCTTTCT 60.027 45.455 0.00 0.00 44.83 2.52
286 287 2.105006 TGCACTCAGCCATCTTTCTC 57.895 50.000 0.00 0.00 44.83 2.87
287 288 1.339438 TGCACTCAGCCATCTTTCTCC 60.339 52.381 0.00 0.00 44.83 3.71
288 289 1.339438 GCACTCAGCCATCTTTCTCCA 60.339 52.381 0.00 0.00 37.23 3.86
289 290 2.683152 GCACTCAGCCATCTTTCTCCAT 60.683 50.000 0.00 0.00 37.23 3.41
290 291 2.943690 CACTCAGCCATCTTTCTCCATG 59.056 50.000 0.00 0.00 0.00 3.66
291 292 2.842496 ACTCAGCCATCTTTCTCCATGA 59.158 45.455 0.00 0.00 0.00 3.07
292 293 3.265221 ACTCAGCCATCTTTCTCCATGAA 59.735 43.478 0.00 0.00 0.00 2.57
293 294 4.263639 ACTCAGCCATCTTTCTCCATGAAA 60.264 41.667 0.00 0.00 41.85 2.69
294 295 4.665451 TCAGCCATCTTTCTCCATGAAAA 58.335 39.130 0.00 0.00 43.25 2.29
295 296 5.078949 TCAGCCATCTTTCTCCATGAAAAA 58.921 37.500 0.00 0.00 43.25 1.94
352 353 7.995463 TTTAAATTTACTGTTCACCAAGTGC 57.005 32.000 0.00 0.00 32.98 4.40
353 354 5.590530 AAATTTACTGTTCACCAAGTGCA 57.409 34.783 0.00 0.00 32.98 4.57
354 355 5.590530 AATTTACTGTTCACCAAGTGCAA 57.409 34.783 0.00 0.00 32.98 4.08
355 356 5.590530 ATTTACTGTTCACCAAGTGCAAA 57.409 34.783 0.00 0.00 32.98 3.68
356 357 4.630894 TTACTGTTCACCAAGTGCAAAG 57.369 40.909 0.00 0.00 32.98 2.77
357 358 1.750778 ACTGTTCACCAAGTGCAAAGG 59.249 47.619 0.00 0.00 32.98 3.11
358 359 2.023673 CTGTTCACCAAGTGCAAAGGA 58.976 47.619 7.28 0.00 32.98 3.36
359 360 2.023673 TGTTCACCAAGTGCAAAGGAG 58.976 47.619 7.28 0.06 32.98 3.69
360 361 1.032014 TTCACCAAGTGCAAAGGAGC 58.968 50.000 7.28 0.00 32.98 4.70
361 362 0.823356 TCACCAAGTGCAAAGGAGCC 60.823 55.000 7.28 0.00 32.98 4.70
362 363 1.531602 ACCAAGTGCAAAGGAGCCC 60.532 57.895 7.28 0.00 0.00 5.19
363 364 2.629656 CCAAGTGCAAAGGAGCCCG 61.630 63.158 0.00 0.00 0.00 6.13
364 365 1.600636 CAAGTGCAAAGGAGCCCGA 60.601 57.895 0.00 0.00 0.00 5.14
365 366 0.962356 CAAGTGCAAAGGAGCCCGAT 60.962 55.000 0.00 0.00 0.00 4.18
366 367 0.678048 AAGTGCAAAGGAGCCCGATC 60.678 55.000 0.00 0.00 0.00 3.69
367 368 1.078143 GTGCAAAGGAGCCCGATCT 60.078 57.895 0.00 0.00 0.00 2.75
368 369 1.092345 GTGCAAAGGAGCCCGATCTC 61.092 60.000 0.00 0.00 0.00 2.75
369 370 1.221840 GCAAAGGAGCCCGATCTCA 59.778 57.895 6.30 0.00 34.84 3.27
370 371 0.813210 GCAAAGGAGCCCGATCTCAG 60.813 60.000 6.30 0.00 34.84 3.35
371 372 0.826715 CAAAGGAGCCCGATCTCAGA 59.173 55.000 6.30 0.00 34.84 3.27
372 373 1.415659 CAAAGGAGCCCGATCTCAGAT 59.584 52.381 0.00 0.00 34.84 2.90
373 374 1.799933 AAGGAGCCCGATCTCAGATT 58.200 50.000 0.00 0.00 34.84 2.40
374 375 1.799933 AGGAGCCCGATCTCAGATTT 58.200 50.000 0.00 0.00 34.84 2.17
375 376 1.415659 AGGAGCCCGATCTCAGATTTG 59.584 52.381 0.00 0.00 34.84 2.32
376 377 1.542108 GGAGCCCGATCTCAGATTTGG 60.542 57.143 0.00 0.00 34.84 3.28
377 378 1.414181 GAGCCCGATCTCAGATTTGGA 59.586 52.381 8.18 0.00 33.41 3.53
378 379 2.038295 GAGCCCGATCTCAGATTTGGAT 59.962 50.000 8.18 1.63 33.41 3.41
379 380 3.242867 AGCCCGATCTCAGATTTGGATA 58.757 45.455 8.18 0.00 0.00 2.59
380 381 3.843027 AGCCCGATCTCAGATTTGGATAT 59.157 43.478 8.18 0.00 0.00 1.63
381 382 4.288105 AGCCCGATCTCAGATTTGGATATT 59.712 41.667 8.18 0.00 0.00 1.28
382 383 4.633565 GCCCGATCTCAGATTTGGATATTC 59.366 45.833 8.18 0.00 0.00 1.75
424 425 5.978322 AGTTAAGTTAGAGCTAAGTATGCGC 59.022 40.000 0.00 0.00 35.28 6.09
476 477 3.376078 GACTGACCACGGCGGGTA 61.376 66.667 17.95 7.84 42.53 3.69
539 543 6.764379 AGGAGTGAAAAGGAAGAAGAGTAAG 58.236 40.000 0.00 0.00 0.00 2.34
540 544 5.410132 GGAGTGAAAAGGAAGAAGAGTAAGC 59.590 44.000 0.00 0.00 0.00 3.09
541 545 5.930135 AGTGAAAAGGAAGAAGAGTAAGCA 58.070 37.500 0.00 0.00 0.00 3.91
542 546 6.538263 AGTGAAAAGGAAGAAGAGTAAGCAT 58.462 36.000 0.00 0.00 0.00 3.79
544 548 7.174080 AGTGAAAAGGAAGAAGAGTAAGCATTC 59.826 37.037 0.00 0.00 0.00 2.67
545 549 6.147821 TGAAAAGGAAGAAGAGTAAGCATTCG 59.852 38.462 0.00 0.00 0.00 3.34
546 550 3.526534 AGGAAGAAGAGTAAGCATTCGC 58.473 45.455 0.00 0.00 38.99 4.70
550 557 1.855360 GAAGAGTAAGCATTCGCGGAG 59.145 52.381 6.13 0.00 45.49 4.63
573 580 4.398247 GTTTCTGCAGCACTTTAATCTCG 58.602 43.478 9.47 0.00 0.00 4.04
633 641 4.216472 CAGACTTTGGGCCTCTTTTCTTAC 59.784 45.833 4.53 0.00 0.00 2.34
646 654 8.577296 GCCTCTTTTCTTACCAAAACTAGATTT 58.423 33.333 0.00 0.00 0.00 2.17
656 664 5.227569 CAAAACTAGATTTGGGCCCTTTT 57.772 39.130 25.70 15.44 36.79 2.27
659 667 3.701664 ACTAGATTTGGGCCCTTTTGAG 58.298 45.455 25.70 15.24 0.00 3.02
671 680 3.430790 GCCCTTTTGAGAAACAAAGCTGT 60.431 43.478 0.00 0.00 46.93 4.40
678 687 0.318699 GAAACAAAGCTGTTCGGCCC 60.319 55.000 0.00 0.00 45.25 5.80
699 708 4.939052 CGTGAGGGTAAGATATTGGACT 57.061 45.455 0.00 0.00 0.00 3.85
700 709 5.277857 CGTGAGGGTAAGATATTGGACTT 57.722 43.478 0.00 0.00 0.00 3.01
701 710 5.671493 CGTGAGGGTAAGATATTGGACTTT 58.329 41.667 0.00 0.00 0.00 2.66
702 711 6.812998 CGTGAGGGTAAGATATTGGACTTTA 58.187 40.000 0.00 0.00 0.00 1.85
703 712 6.700520 CGTGAGGGTAAGATATTGGACTTTAC 59.299 42.308 0.00 0.00 0.00 2.01
724 813 1.834263 GGGCTGACTTGTATCTGGAGT 59.166 52.381 0.00 0.00 0.00 3.85
727 816 3.935828 GGCTGACTTGTATCTGGAGTTTC 59.064 47.826 0.00 0.00 0.00 2.78
735 824 0.618981 ATCTGGAGTTTCGTTCCCCC 59.381 55.000 0.00 0.00 33.62 5.40
785 875 3.928769 CGCACGACGGCATCCATG 61.929 66.667 0.00 0.00 38.44 3.66
809 899 4.346127 TCATTCCACTGATGACCATAGGAG 59.654 45.833 0.00 0.00 31.83 3.69
836 926 1.305297 AGACGAGTGCCATCCCAGA 60.305 57.895 0.00 0.00 0.00 3.86
888 978 1.078759 CTGTCGTCTTCACCATCGCC 61.079 60.000 0.00 0.00 0.00 5.54
894 984 0.250234 TCTTCACCATCGCCTCCTTG 59.750 55.000 0.00 0.00 0.00 3.61
900 996 0.804989 CCATCGCCTCCTTGTTCAAC 59.195 55.000 0.00 0.00 0.00 3.18
906 1002 1.476833 GCCTCCTTGTTCAACCTCACA 60.477 52.381 0.00 0.00 0.00 3.58
934 1030 3.327172 CCTCTCCTTCATGCATATGTCCT 59.673 47.826 0.00 0.00 35.73 3.85
1023 1120 2.281761 CCTTGCTGCCGTCCAAGT 60.282 61.111 0.00 0.00 37.36 3.16
1108 1212 5.525012 TGATTATTCTTGTCCATCTTCTGCG 59.475 40.000 0.00 0.00 0.00 5.18
1112 1216 3.067106 TCTTGTCCATCTTCTGCGTTTC 58.933 45.455 0.00 0.00 0.00 2.78
1150 1254 7.679783 TGTCCATTTTCTCTTATGTTCTCAGA 58.320 34.615 0.00 0.00 0.00 3.27
1194 1298 0.317479 AGCCGTTTAGCTCACGAACT 59.683 50.000 17.69 12.14 39.48 3.01
1195 1299 1.542915 AGCCGTTTAGCTCACGAACTA 59.457 47.619 17.69 0.00 39.48 2.24
1220 1324 3.540617 ACAAATTGCCAAAACCCTTGAC 58.459 40.909 0.00 0.00 0.00 3.18
1225 1329 1.135333 TGCCAAAACCCTTGACGAAAC 59.865 47.619 0.00 0.00 0.00 2.78
1278 1382 4.096081 CAGTAAGTAGTTGTACTCCCTCCG 59.904 50.000 0.00 0.00 38.66 4.63
1281 1385 1.399791 GTAGTTGTACTCCCTCCGACG 59.600 57.143 0.00 0.00 0.00 5.12
1317 1421 5.912892 TCAGCAACAGTTAATATGGATCGA 58.087 37.500 0.00 0.00 0.00 3.59
1359 1467 1.953231 CTCTGATCTGACGCCTGGCA 61.953 60.000 20.29 0.00 0.00 4.92
1388 1496 1.909700 TTAAAGCAGGGCAAGTCTGG 58.090 50.000 0.00 0.00 33.16 3.86
1562 1676 0.673644 ACTACACAATGCTGCCCGTC 60.674 55.000 0.00 0.00 0.00 4.79
1672 1786 1.064463 CACCGTACCTCTACTACCCCA 60.064 57.143 0.00 0.00 0.00 4.96
1716 1830 1.257936 CGTGAGTCAACGAAACACAGG 59.742 52.381 8.78 0.00 46.49 4.00
1718 1832 1.295792 GAGTCAACGAAACACAGGCA 58.704 50.000 0.00 0.00 0.00 4.75
1749 1863 4.368874 TGTGTATTTGCCATTCCATTCG 57.631 40.909 0.00 0.00 0.00 3.34
1756 1870 2.114670 CCATTCCATTCGTGCGCCT 61.115 57.895 4.18 0.00 0.00 5.52
1762 1876 2.048597 ATTCGTGCGCCTCGTGAA 60.049 55.556 18.47 9.85 0.00 3.18
1767 1881 1.695893 CGTGCGCCTCGTGAATGATT 61.696 55.000 4.18 0.00 0.00 2.57
1883 1997 0.888736 CACCTGGCCAACATCGACAA 60.889 55.000 7.01 0.00 0.00 3.18
2152 2266 2.427453 GTGACCAAGGAGCTCGAGAATA 59.573 50.000 18.75 0.00 0.00 1.75
2193 2307 2.436109 GCCCAGGCCAAGAACTCA 59.564 61.111 5.01 0.00 34.56 3.41
2196 2310 1.676967 CCAGGCCAAGAACTCAGCC 60.677 63.158 5.01 6.88 46.13 4.85
2207 2321 3.699894 CTCAGCCCTCAGCCGTGT 61.700 66.667 0.00 0.00 45.47 4.49
2208 2322 3.241530 TCAGCCCTCAGCCGTGTT 61.242 61.111 0.00 0.00 45.47 3.32
2228 2342 1.668101 GACGAGGCCGAGAAGACCAT 61.668 60.000 7.50 0.00 39.50 3.55
2229 2343 1.227089 CGAGGCCGAGAAGACCATG 60.227 63.158 0.00 0.00 38.22 3.66
2231 2345 2.244117 GAGGCCGAGAAGACCATGCA 62.244 60.000 0.00 0.00 0.00 3.96
2232 2346 1.153086 GGCCGAGAAGACCATGCAT 60.153 57.895 0.00 0.00 0.00 3.96
2256 2370 5.957168 TGGAAATGCAAAAAGGATGGAGATA 59.043 36.000 0.00 0.00 0.00 1.98
2272 2386 2.961741 GAGATACTGATGGCTGAGGTGA 59.038 50.000 0.00 0.00 0.00 4.02
2337 2451 1.150567 AGATCATCGACAAGCTGCGC 61.151 55.000 0.00 0.00 0.00 6.09
2340 2454 2.882777 ATCGACAAGCTGCGCTCG 60.883 61.111 9.73 8.73 38.25 5.03
2343 2457 3.184683 GACAAGCTGCGCTCGGAG 61.185 66.667 9.73 6.43 38.25 4.63
2415 2529 2.549778 GCTGGTCAGAGCAGAAGAAGTT 60.550 50.000 30.00 0.00 45.98 2.66
2419 2533 3.493350 GGTCAGAGCAGAAGAAGTTGTCA 60.493 47.826 0.00 0.00 0.00 3.58
2587 2701 2.143925 CGTCCCTGACAAAGAGTTTCC 58.856 52.381 0.00 0.00 32.09 3.13
2605 2719 2.031516 CAGGAAGCACAGTCGCAGG 61.032 63.158 0.00 0.00 0.00 4.85
2625 2739 1.620819 GTCCTCCAGCTGACAGAGAAA 59.379 52.381 17.39 2.66 0.00 2.52
2629 2743 2.495270 CTCCAGCTGACAGAGAAAGCTA 59.505 50.000 17.39 0.00 45.33 3.32
2640 2754 2.100584 AGAGAAAGCTACGGCATCAGAG 59.899 50.000 0.00 0.00 41.70 3.35
2688 2802 2.687805 CCTCGAGACGAACAGGCGA 61.688 63.158 15.71 0.00 34.74 5.54
2698 2812 0.109272 GAACAGGCGACTCGACATCA 60.109 55.000 7.14 0.00 40.21 3.07
2727 2841 2.413142 GGCATCTGAACTGCAGGCC 61.413 63.158 19.93 15.14 44.98 5.19
2739 2853 2.998279 GCAGGCCACCATTGACAGC 61.998 63.158 5.01 0.00 0.00 4.40
2744 2858 0.895100 GCCACCATTGACAGCCTGAA 60.895 55.000 0.00 0.00 0.00 3.02
2802 2916 1.221466 TTGTCAGCAACGAGAAGGCG 61.221 55.000 0.00 0.00 37.29 5.52
2829 2943 3.991051 CAGGTCGGTGTGCTCGGT 61.991 66.667 0.00 0.00 0.00 4.69
2898 3012 1.499007 AGGAACAAGGCCAAGAAAGGA 59.501 47.619 5.01 0.00 0.00 3.36
2904 3018 0.610687 AGGCCAAGAAAGGAGTCGAG 59.389 55.000 5.01 0.00 0.00 4.04
2907 3021 1.002087 GCCAAGAAAGGAGTCGAGGAA 59.998 52.381 0.00 0.00 0.00 3.36
2908 3022 2.355209 GCCAAGAAAGGAGTCGAGGAAT 60.355 50.000 0.00 0.00 0.00 3.01
2915 3029 2.741145 AGGAGTCGAGGAATTAGCAGT 58.259 47.619 0.00 0.00 0.00 4.40
2978 3092 1.973812 GGGTCCTGGCAAAGCAGAC 60.974 63.158 0.00 0.00 0.00 3.51
2979 3093 1.073897 GGTCCTGGCAAAGCAGACT 59.926 57.895 0.00 0.00 0.00 3.24
2983 3097 0.250640 CCTGGCAAAGCAGACTGAGT 60.251 55.000 6.65 0.00 0.00 3.41
2991 3105 2.758736 AGCAGACTGAGTTGGATCAC 57.241 50.000 6.65 0.00 0.00 3.06
3013 3127 2.402305 CACAGCTTCAGATATCCGAGC 58.598 52.381 12.30 12.30 0.00 5.03
3021 3135 2.927429 CAGATATCCGAGCTGAAGACG 58.073 52.381 0.00 0.00 44.86 4.18
3027 3141 2.074124 CGAGCTGAAGACGGAAAGC 58.926 57.895 0.00 0.00 35.86 3.51
3032 3146 1.873591 GCTGAAGACGGAAAGCAAGAA 59.126 47.619 0.00 0.00 35.69 2.52
3033 3147 2.485814 GCTGAAGACGGAAAGCAAGAAT 59.514 45.455 0.00 0.00 35.69 2.40
3138 3252 7.152645 AGAATGCAAAAGAGAAGTACGAGTTA 58.847 34.615 0.00 0.00 0.00 2.24
3388 3502 8.052930 GGTTCATCAACTGGAAGAAGGATTCG 62.053 46.154 0.00 0.00 40.46 3.34
3417 3531 1.820906 GATGGATGCCGCAAGCTCA 60.821 57.895 0.00 0.00 44.23 4.26
3578 3692 4.142315 CGAAGCCTCAAAATTGATGGATGT 60.142 41.667 12.75 2.43 36.46 3.06
3905 4019 2.445438 CGAAAGCCGACGAAGCCTC 61.445 63.158 0.00 0.00 41.76 4.70
3996 4110 3.305131 CCAACACACTACTCGTCAAGCTA 60.305 47.826 0.00 0.00 0.00 3.32
4120 4234 1.004044 CCAAGATCACTGAGGCCAACT 59.996 52.381 5.01 0.00 0.00 3.16
4278 4392 1.800315 GCTTGCTGCAATGCTCGTG 60.800 57.895 16.38 3.35 42.31 4.35
4350 4464 1.734117 GCAGCCAAATGTGTTCCGC 60.734 57.895 0.00 0.00 0.00 5.54
4365 4479 0.249955 TCCGCAAGATGATGTGCTCA 59.750 50.000 0.00 0.00 38.66 4.26
4368 4482 0.737219 GCAAGATGATGTGCTCACCC 59.263 55.000 0.00 0.00 36.48 4.61
4374 4488 0.697658 TGATGTGCTCACCCATGGAA 59.302 50.000 15.22 0.00 0.00 3.53
4383 4497 3.369400 CCCATGGAAAACGCCGCA 61.369 61.111 15.22 0.00 0.00 5.69
4464 4578 1.356124 AGCATGTGGAAGTGGAGACT 58.644 50.000 0.00 0.00 0.00 3.24
4787 4901 2.706190 AGCTGAACAAACACTCCTAGGT 59.294 45.455 9.08 0.00 0.00 3.08
5093 5212 5.581126 AGATGCTAAATGCCAAATTCGAA 57.419 34.783 0.00 0.00 42.00 3.71
5188 5307 7.314393 GTTTTGTTTTCCCACTAACTGTAACA 58.686 34.615 0.00 0.00 0.00 2.41
5202 5321 2.689983 CTGTAACATTCATCCAAGGGGC 59.310 50.000 0.00 0.00 0.00 5.80
5256 5375 7.610305 AGTTCAAGTTGTTCAGGAAAGTAAAGA 59.390 33.333 2.11 0.00 0.00 2.52
5260 5379 5.770162 AGTTGTTCAGGAAAGTAAAGATGGG 59.230 40.000 0.00 0.00 0.00 4.00
5264 5383 4.335416 TCAGGAAAGTAAAGATGGGCTTG 58.665 43.478 0.00 0.00 36.80 4.01
5555 5675 5.975410 CAGTAGCTCTGGTAAACTATTGC 57.025 43.478 0.00 0.00 40.23 3.56
5559 5679 3.264450 AGCTCTGGTAAACTATTGCTGGT 59.736 43.478 0.00 0.00 0.00 4.00
5688 5812 2.154462 CGTTCTCTTTTGGAGGTGCAT 58.846 47.619 0.00 0.00 42.10 3.96
5699 5823 1.674962 GGAGGTGCATGCTGATTTCTC 59.325 52.381 20.33 14.56 0.00 2.87
5809 5934 3.327757 AGGTTAGTGCCAGATCAACAGAA 59.672 43.478 0.00 0.00 0.00 3.02
5963 6088 6.595682 TGGAATTAGCCCTTCTTTATCTGAG 58.404 40.000 0.00 0.00 0.00 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.208535 CATTGGCCTTTGCATGGTGAT 59.791 47.619 3.32 0.00 40.13 3.06
1 2 0.609151 CATTGGCCTTTGCATGGTGA 59.391 50.000 3.32 0.00 40.13 4.02
2 3 0.609151 TCATTGGCCTTTGCATGGTG 59.391 50.000 3.32 0.00 40.13 4.17
3 4 1.575419 ATCATTGGCCTTTGCATGGT 58.425 45.000 3.32 0.00 40.13 3.55
4 5 3.823281 TTATCATTGGCCTTTGCATGG 57.177 42.857 3.32 2.22 40.13 3.66
5 6 6.932400 ACATTATTATCATTGGCCTTTGCATG 59.068 34.615 3.32 0.00 40.13 4.06
6 7 7.069877 ACATTATTATCATTGGCCTTTGCAT 57.930 32.000 3.32 0.73 40.13 3.96
7 8 6.482898 ACATTATTATCATTGGCCTTTGCA 57.517 33.333 3.32 0.00 40.13 4.08
8 9 7.712205 AGAAACATTATTATCATTGGCCTTTGC 59.288 33.333 3.32 0.00 0.00 3.68
26 27 9.378551 TGTGCGTAAGAAGAATATAGAAACATT 57.621 29.630 0.00 0.00 43.02 2.71
27 28 8.942338 TGTGCGTAAGAAGAATATAGAAACAT 57.058 30.769 0.00 0.00 43.02 2.71
28 29 8.766000 TTGTGCGTAAGAAGAATATAGAAACA 57.234 30.769 0.00 0.00 43.02 2.83
29 30 9.690434 CTTTGTGCGTAAGAAGAATATAGAAAC 57.310 33.333 0.00 0.00 43.02 2.78
30 31 9.647797 TCTTTGTGCGTAAGAAGAATATAGAAA 57.352 29.630 0.00 0.00 43.02 2.52
31 32 9.647797 TTCTTTGTGCGTAAGAAGAATATAGAA 57.352 29.630 7.98 0.00 36.86 2.10
32 33 9.647797 TTTCTTTGTGCGTAAGAAGAATATAGA 57.352 29.630 11.43 0.00 41.25 1.98
36 37 9.431887 ACTATTTCTTTGTGCGTAAGAAGAATA 57.568 29.630 11.43 5.76 41.25 1.75
37 38 8.324163 ACTATTTCTTTGTGCGTAAGAAGAAT 57.676 30.769 11.43 6.67 41.25 2.40
38 39 7.724305 ACTATTTCTTTGTGCGTAAGAAGAA 57.276 32.000 7.98 7.98 41.25 2.52
39 40 8.997621 ATACTATTTCTTTGTGCGTAAGAAGA 57.002 30.769 7.48 0.00 41.25 2.87
40 41 9.690434 GAATACTATTTCTTTGTGCGTAAGAAG 57.310 33.333 7.48 1.45 41.25 2.85
41 42 8.662141 GGAATACTATTTCTTTGTGCGTAAGAA 58.338 33.333 4.24 4.24 39.24 2.52
42 43 7.820386 TGGAATACTATTTCTTTGTGCGTAAGA 59.180 33.333 0.00 0.00 43.02 2.10
43 44 7.970384 TGGAATACTATTTCTTTGTGCGTAAG 58.030 34.615 0.00 0.00 43.44 2.34
44 45 7.065324 CCTGGAATACTATTTCTTTGTGCGTAA 59.935 37.037 0.00 0.00 0.00 3.18
45 46 6.537301 CCTGGAATACTATTTCTTTGTGCGTA 59.463 38.462 0.00 0.00 0.00 4.42
46 47 5.354234 CCTGGAATACTATTTCTTTGTGCGT 59.646 40.000 0.00 0.00 0.00 5.24
47 48 5.584649 TCCTGGAATACTATTTCTTTGTGCG 59.415 40.000 0.00 0.00 0.00 5.34
48 49 6.458888 GCTCCTGGAATACTATTTCTTTGTGC 60.459 42.308 0.00 0.00 0.00 4.57
49 50 6.599244 TGCTCCTGGAATACTATTTCTTTGTG 59.401 38.462 0.00 0.00 0.00 3.33
50 51 6.599638 GTGCTCCTGGAATACTATTTCTTTGT 59.400 38.462 0.00 0.00 0.00 2.83
51 52 6.599244 TGTGCTCCTGGAATACTATTTCTTTG 59.401 38.462 0.00 0.00 0.00 2.77
52 53 6.721318 TGTGCTCCTGGAATACTATTTCTTT 58.279 36.000 0.00 0.00 0.00 2.52
53 54 6.313519 TGTGCTCCTGGAATACTATTTCTT 57.686 37.500 0.00 0.00 0.00 2.52
54 55 5.957771 TGTGCTCCTGGAATACTATTTCT 57.042 39.130 0.00 0.00 0.00 2.52
55 56 7.391148 TTTTGTGCTCCTGGAATACTATTTC 57.609 36.000 0.00 0.00 0.00 2.17
56 57 6.127619 GCTTTTGTGCTCCTGGAATACTATTT 60.128 38.462 0.00 0.00 0.00 1.40
57 58 5.358160 GCTTTTGTGCTCCTGGAATACTATT 59.642 40.000 0.00 0.00 0.00 1.73
58 59 4.884164 GCTTTTGTGCTCCTGGAATACTAT 59.116 41.667 0.00 0.00 0.00 2.12
59 60 4.261801 GCTTTTGTGCTCCTGGAATACTA 58.738 43.478 0.00 0.00 0.00 1.82
60 61 3.084786 GCTTTTGTGCTCCTGGAATACT 58.915 45.455 0.00 0.00 0.00 2.12
61 62 2.164422 GGCTTTTGTGCTCCTGGAATAC 59.836 50.000 0.00 0.34 0.00 1.89
62 63 2.446435 GGCTTTTGTGCTCCTGGAATA 58.554 47.619 0.00 0.00 0.00 1.75
63 64 1.260544 GGCTTTTGTGCTCCTGGAAT 58.739 50.000 0.00 0.00 0.00 3.01
64 65 0.827507 GGGCTTTTGTGCTCCTGGAA 60.828 55.000 0.00 0.00 0.00 3.53
65 66 1.228552 GGGCTTTTGTGCTCCTGGA 60.229 57.895 0.00 0.00 0.00 3.86
66 67 0.829182 AAGGGCTTTTGTGCTCCTGG 60.829 55.000 0.00 0.00 35.09 4.45
67 68 0.316204 CAAGGGCTTTTGTGCTCCTG 59.684 55.000 0.00 0.00 35.09 3.86
68 69 1.466851 GCAAGGGCTTTTGTGCTCCT 61.467 55.000 4.67 0.00 35.94 3.69
69 70 1.005748 GCAAGGGCTTTTGTGCTCC 60.006 57.895 4.67 0.00 36.96 4.70
70 71 4.661461 GCAAGGGCTTTTGTGCTC 57.339 55.556 4.67 0.00 36.96 4.26
80 81 1.099879 ATGAATCTGCGAGCAAGGGC 61.100 55.000 0.00 0.00 41.61 5.19
81 82 0.942962 GATGAATCTGCGAGCAAGGG 59.057 55.000 0.00 0.00 0.00 3.95
82 83 0.580578 CGATGAATCTGCGAGCAAGG 59.419 55.000 0.00 0.00 0.00 3.61
83 84 0.580578 CCGATGAATCTGCGAGCAAG 59.419 55.000 0.00 0.00 0.00 4.01
84 85 0.108186 ACCGATGAATCTGCGAGCAA 60.108 50.000 0.00 0.00 0.00 3.91
85 86 0.108186 AACCGATGAATCTGCGAGCA 60.108 50.000 0.00 0.00 0.00 4.26
86 87 0.302890 CAACCGATGAATCTGCGAGC 59.697 55.000 0.00 0.00 0.00 5.03
87 88 1.857217 CTCAACCGATGAATCTGCGAG 59.143 52.381 0.00 0.00 37.67 5.03
88 89 1.204704 ACTCAACCGATGAATCTGCGA 59.795 47.619 0.00 0.00 37.67 5.10
89 90 1.325640 CACTCAACCGATGAATCTGCG 59.674 52.381 0.00 0.00 37.67 5.18
90 91 1.063174 GCACTCAACCGATGAATCTGC 59.937 52.381 0.00 0.00 37.67 4.26
91 92 1.325640 CGCACTCAACCGATGAATCTG 59.674 52.381 0.00 0.00 37.67 2.90
92 93 1.066858 ACGCACTCAACCGATGAATCT 60.067 47.619 0.00 0.00 37.67 2.40
93 94 1.061131 CACGCACTCAACCGATGAATC 59.939 52.381 0.00 0.00 37.67 2.52
94 95 1.078709 CACGCACTCAACCGATGAAT 58.921 50.000 0.00 0.00 37.67 2.57
95 96 0.032815 TCACGCACTCAACCGATGAA 59.967 50.000 0.00 0.00 37.67 2.57
96 97 0.246360 ATCACGCACTCAACCGATGA 59.754 50.000 0.00 0.00 36.38 2.92
97 98 0.647410 GATCACGCACTCAACCGATG 59.353 55.000 0.00 0.00 0.00 3.84
98 99 0.460284 GGATCACGCACTCAACCGAT 60.460 55.000 0.00 0.00 0.00 4.18
99 100 1.080093 GGATCACGCACTCAACCGA 60.080 57.895 0.00 0.00 0.00 4.69
100 101 2.444624 CGGATCACGCACTCAACCG 61.445 63.158 0.00 0.00 34.82 4.44
101 102 3.474806 CGGATCACGCACTCAACC 58.525 61.111 0.00 0.00 34.82 3.77
111 112 4.662145 CTCTAAATTTTGGCACGGATCAC 58.338 43.478 0.00 0.00 0.00 3.06
112 113 3.128589 GCTCTAAATTTTGGCACGGATCA 59.871 43.478 0.00 0.00 0.00 2.92
113 114 3.128589 TGCTCTAAATTTTGGCACGGATC 59.871 43.478 0.00 0.00 0.00 3.36
114 115 3.088532 TGCTCTAAATTTTGGCACGGAT 58.911 40.909 0.00 0.00 0.00 4.18
115 116 2.509569 TGCTCTAAATTTTGGCACGGA 58.490 42.857 0.00 0.00 0.00 4.69
116 117 3.508744 ATGCTCTAAATTTTGGCACGG 57.491 42.857 14.29 0.00 35.72 4.94
117 118 4.091800 CCAAATGCTCTAAATTTTGGCACG 59.908 41.667 14.29 8.66 41.00 5.34
118 119 5.237048 TCCAAATGCTCTAAATTTTGGCAC 58.763 37.500 14.29 1.17 44.94 5.01
119 120 5.480642 TCCAAATGCTCTAAATTTTGGCA 57.519 34.783 14.34 14.34 44.94 4.92
120 121 5.876460 ACATCCAAATGCTCTAAATTTTGGC 59.124 36.000 8.12 1.33 44.94 4.52
121 122 6.875195 ACACATCCAAATGCTCTAAATTTTGG 59.125 34.615 0.00 6.89 46.09 3.28
122 123 7.599621 TCACACATCCAAATGCTCTAAATTTTG 59.400 33.333 0.00 0.00 36.26 2.44
123 124 7.669427 TCACACATCCAAATGCTCTAAATTTT 58.331 30.769 0.00 0.00 36.26 1.82
124 125 7.039504 ACTCACACATCCAAATGCTCTAAATTT 60.040 33.333 0.00 0.00 36.26 1.82
125 126 6.435277 ACTCACACATCCAAATGCTCTAAATT 59.565 34.615 0.00 0.00 36.26 1.82
126 127 5.948162 ACTCACACATCCAAATGCTCTAAAT 59.052 36.000 0.00 0.00 36.26 1.40
127 128 5.316167 ACTCACACATCCAAATGCTCTAAA 58.684 37.500 0.00 0.00 36.26 1.85
128 129 4.910195 ACTCACACATCCAAATGCTCTAA 58.090 39.130 0.00 0.00 36.26 2.10
129 130 4.558226 ACTCACACATCCAAATGCTCTA 57.442 40.909 0.00 0.00 36.26 2.43
130 131 3.430042 ACTCACACATCCAAATGCTCT 57.570 42.857 0.00 0.00 36.26 4.09
131 132 5.121811 AGATACTCACACATCCAAATGCTC 58.878 41.667 0.00 0.00 36.26 4.26
132 133 5.104610 AGAGATACTCACACATCCAAATGCT 60.105 40.000 0.00 0.00 32.72 3.79
133 134 5.121811 AGAGATACTCACACATCCAAATGC 58.878 41.667 0.00 0.00 32.72 3.56
134 135 6.841443 GAGAGATACTCACACATCCAAATG 57.159 41.667 0.00 0.00 44.36 2.32
162 163 9.533253 CTTCACACACCTCAAATTTATCTTTTT 57.467 29.630 0.00 0.00 0.00 1.94
163 164 8.912988 TCTTCACACACCTCAAATTTATCTTTT 58.087 29.630 0.00 0.00 0.00 2.27
164 165 8.463930 TCTTCACACACCTCAAATTTATCTTT 57.536 30.769 0.00 0.00 0.00 2.52
165 166 8.463930 TTCTTCACACACCTCAAATTTATCTT 57.536 30.769 0.00 0.00 0.00 2.40
166 167 7.721399 ACTTCTTCACACACCTCAAATTTATCT 59.279 33.333 0.00 0.00 0.00 1.98
167 168 7.875971 ACTTCTTCACACACCTCAAATTTATC 58.124 34.615 0.00 0.00 0.00 1.75
168 169 7.823745 ACTTCTTCACACACCTCAAATTTAT 57.176 32.000 0.00 0.00 0.00 1.40
169 170 7.639113 AACTTCTTCACACACCTCAAATTTA 57.361 32.000 0.00 0.00 0.00 1.40
170 171 6.530019 AACTTCTTCACACACCTCAAATTT 57.470 33.333 0.00 0.00 0.00 1.82
171 172 6.530019 AAACTTCTTCACACACCTCAAATT 57.470 33.333 0.00 0.00 0.00 1.82
172 173 7.823745 ATAAACTTCTTCACACACCTCAAAT 57.176 32.000 0.00 0.00 0.00 2.32
173 174 7.479980 CAATAAACTTCTTCACACACCTCAAA 58.520 34.615 0.00 0.00 0.00 2.69
174 175 6.459573 GCAATAAACTTCTTCACACACCTCAA 60.460 38.462 0.00 0.00 0.00 3.02
175 176 5.008613 GCAATAAACTTCTTCACACACCTCA 59.991 40.000 0.00 0.00 0.00 3.86
176 177 5.239525 AGCAATAAACTTCTTCACACACCTC 59.760 40.000 0.00 0.00 0.00 3.85
177 178 5.133221 AGCAATAAACTTCTTCACACACCT 58.867 37.500 0.00 0.00 0.00 4.00
178 179 5.438761 AGCAATAAACTTCTTCACACACC 57.561 39.130 0.00 0.00 0.00 4.16
179 180 5.687285 CCAAGCAATAAACTTCTTCACACAC 59.313 40.000 0.00 0.00 0.00 3.82
180 181 5.592282 TCCAAGCAATAAACTTCTTCACACA 59.408 36.000 0.00 0.00 0.00 3.72
181 182 5.915196 GTCCAAGCAATAAACTTCTTCACAC 59.085 40.000 0.00 0.00 0.00 3.82
182 183 5.009610 GGTCCAAGCAATAAACTTCTTCACA 59.990 40.000 0.00 0.00 0.00 3.58
183 184 5.461526 GGTCCAAGCAATAAACTTCTTCAC 58.538 41.667 0.00 0.00 0.00 3.18
184 185 4.522789 GGGTCCAAGCAATAAACTTCTTCA 59.477 41.667 0.00 0.00 0.00 3.02
185 186 4.522789 TGGGTCCAAGCAATAAACTTCTTC 59.477 41.667 0.00 0.00 0.00 2.87
186 187 4.479158 TGGGTCCAAGCAATAAACTTCTT 58.521 39.130 0.00 0.00 0.00 2.52
187 188 4.112634 TGGGTCCAAGCAATAAACTTCT 57.887 40.909 0.00 0.00 0.00 2.85
188 189 5.405935 AATGGGTCCAAGCAATAAACTTC 57.594 39.130 0.00 0.00 0.00 3.01
189 190 5.823861 AAATGGGTCCAAGCAATAAACTT 57.176 34.783 0.00 0.00 0.00 2.66
190 191 5.823861 AAAATGGGTCCAAGCAATAAACT 57.176 34.783 0.00 0.00 0.00 2.66
219 220 6.593382 AGCATTTGAACATCTGAGTAGTTCTC 59.407 38.462 16.21 0.00 41.56 2.87
220 221 6.471146 AGCATTTGAACATCTGAGTAGTTCT 58.529 36.000 16.21 0.29 41.56 3.01
221 222 6.734104 AGCATTTGAACATCTGAGTAGTTC 57.266 37.500 11.03 11.03 41.42 3.01
222 223 7.516198 AAAGCATTTGAACATCTGAGTAGTT 57.484 32.000 0.00 0.00 36.60 2.24
238 239 2.730928 CGTGCCGAATTTCAAAGCATTT 59.269 40.909 8.46 0.00 40.26 2.32
239 240 2.327568 CGTGCCGAATTTCAAAGCATT 58.672 42.857 8.46 0.00 35.62 3.56
240 241 1.981254 CGTGCCGAATTTCAAAGCAT 58.019 45.000 8.46 0.00 35.62 3.79
241 242 0.662970 GCGTGCCGAATTTCAAAGCA 60.663 50.000 0.00 0.00 0.00 3.91
242 243 0.662970 TGCGTGCCGAATTTCAAAGC 60.663 50.000 0.00 0.00 0.00 3.51
243 244 1.052287 GTGCGTGCCGAATTTCAAAG 58.948 50.000 0.00 0.00 0.00 2.77
244 245 0.665835 AGTGCGTGCCGAATTTCAAA 59.334 45.000 0.00 0.00 0.00 2.69
245 246 0.665835 AAGTGCGTGCCGAATTTCAA 59.334 45.000 0.00 0.00 0.00 2.69
246 247 0.237235 GAAGTGCGTGCCGAATTTCA 59.763 50.000 6.11 0.00 0.00 2.69
247 248 0.237235 TGAAGTGCGTGCCGAATTTC 59.763 50.000 4.54 4.54 0.00 2.17
248 249 0.881118 ATGAAGTGCGTGCCGAATTT 59.119 45.000 0.00 0.00 0.00 1.82
249 250 0.168788 CATGAAGTGCGTGCCGAATT 59.831 50.000 0.00 0.00 0.00 2.17
250 251 1.796151 CATGAAGTGCGTGCCGAAT 59.204 52.632 0.00 0.00 0.00 3.34
251 252 3.252964 CATGAAGTGCGTGCCGAA 58.747 55.556 0.00 0.00 0.00 4.30
260 261 1.400846 GATGGCTGAGTGCATGAAGTG 59.599 52.381 0.00 0.00 45.15 3.16
261 262 1.281287 AGATGGCTGAGTGCATGAAGT 59.719 47.619 0.00 0.00 45.15 3.01
262 263 2.039818 AGATGGCTGAGTGCATGAAG 57.960 50.000 0.00 0.00 45.15 3.02
263 264 2.502142 AAGATGGCTGAGTGCATGAA 57.498 45.000 0.00 0.00 45.15 2.57
264 265 2.026542 AGAAAGATGGCTGAGTGCATGA 60.027 45.455 0.00 0.00 45.15 3.07
265 266 2.355132 GAGAAAGATGGCTGAGTGCATG 59.645 50.000 0.00 0.00 45.15 4.06
266 267 2.641305 GAGAAAGATGGCTGAGTGCAT 58.359 47.619 0.00 0.00 45.15 3.96
267 268 1.339438 GGAGAAAGATGGCTGAGTGCA 60.339 52.381 0.00 0.00 45.15 4.57
268 269 1.339438 TGGAGAAAGATGGCTGAGTGC 60.339 52.381 0.00 0.00 41.94 4.40
269 270 2.775911 TGGAGAAAGATGGCTGAGTG 57.224 50.000 0.00 0.00 0.00 3.51
270 271 2.842496 TCATGGAGAAAGATGGCTGAGT 59.158 45.455 0.00 0.00 0.00 3.41
271 272 3.555527 TCATGGAGAAAGATGGCTGAG 57.444 47.619 0.00 0.00 0.00 3.35
272 273 4.305539 TTTCATGGAGAAAGATGGCTGA 57.694 40.909 0.00 0.00 41.17 4.26
273 274 5.395682 TTTTTCATGGAGAAAGATGGCTG 57.604 39.130 0.00 0.00 46.24 4.85
326 327 8.874816 GCACTTGGTGAACAGTAAATTTAAAAA 58.125 29.630 0.00 0.00 35.23 1.94
327 328 8.035394 TGCACTTGGTGAACAGTAAATTTAAAA 58.965 29.630 0.00 0.00 35.23 1.52
328 329 7.548097 TGCACTTGGTGAACAGTAAATTTAAA 58.452 30.769 0.00 0.00 35.23 1.52
329 330 7.101652 TGCACTTGGTGAACAGTAAATTTAA 57.898 32.000 0.00 0.00 35.23 1.52
330 331 6.701145 TGCACTTGGTGAACAGTAAATTTA 57.299 33.333 1.57 0.00 35.23 1.40
331 332 5.590530 TGCACTTGGTGAACAGTAAATTT 57.409 34.783 1.57 0.00 35.23 1.82
332 333 5.590530 TTGCACTTGGTGAACAGTAAATT 57.409 34.783 1.57 0.00 35.23 1.82
333 334 5.451798 CCTTTGCACTTGGTGAACAGTAAAT 60.452 40.000 1.57 0.00 35.23 1.40
334 335 4.142271 CCTTTGCACTTGGTGAACAGTAAA 60.142 41.667 1.57 0.00 35.23 2.01
335 336 3.380004 CCTTTGCACTTGGTGAACAGTAA 59.620 43.478 1.57 0.00 35.23 2.24
336 337 2.948979 CCTTTGCACTTGGTGAACAGTA 59.051 45.455 1.57 0.00 35.23 2.74
337 338 1.750778 CCTTTGCACTTGGTGAACAGT 59.249 47.619 1.57 0.00 35.23 3.55
338 339 2.023673 TCCTTTGCACTTGGTGAACAG 58.976 47.619 1.57 0.00 35.23 3.16
339 340 2.023673 CTCCTTTGCACTTGGTGAACA 58.976 47.619 1.57 0.00 35.23 3.18
340 341 1.269257 GCTCCTTTGCACTTGGTGAAC 60.269 52.381 1.57 0.00 35.23 3.18
341 342 1.032014 GCTCCTTTGCACTTGGTGAA 58.968 50.000 1.57 0.00 35.23 3.18
342 343 0.823356 GGCTCCTTTGCACTTGGTGA 60.823 55.000 1.57 0.00 35.23 4.02
343 344 1.662044 GGCTCCTTTGCACTTGGTG 59.338 57.895 0.00 0.00 36.51 4.17
344 345 1.531602 GGGCTCCTTTGCACTTGGT 60.532 57.895 0.00 0.00 32.79 3.67
345 346 2.629656 CGGGCTCCTTTGCACTTGG 61.630 63.158 0.00 0.00 33.50 3.61
346 347 0.962356 ATCGGGCTCCTTTGCACTTG 60.962 55.000 0.00 0.00 33.50 3.16
347 348 0.678048 GATCGGGCTCCTTTGCACTT 60.678 55.000 0.00 0.00 33.50 3.16
348 349 1.078143 GATCGGGCTCCTTTGCACT 60.078 57.895 0.00 0.00 33.50 4.40
349 350 1.078143 AGATCGGGCTCCTTTGCAC 60.078 57.895 0.00 0.00 34.04 4.57
350 351 1.221840 GAGATCGGGCTCCTTTGCA 59.778 57.895 0.00 0.00 34.04 4.08
351 352 0.813210 CTGAGATCGGGCTCCTTTGC 60.813 60.000 3.55 0.00 33.95 3.68
352 353 0.826715 TCTGAGATCGGGCTCCTTTG 59.173 55.000 3.55 0.00 33.95 2.77
353 354 1.799933 ATCTGAGATCGGGCTCCTTT 58.200 50.000 0.00 0.00 33.95 3.11
354 355 1.799933 AATCTGAGATCGGGCTCCTT 58.200 50.000 0.00 0.00 33.95 3.36
355 356 1.415659 CAAATCTGAGATCGGGCTCCT 59.584 52.381 0.00 0.00 33.95 3.69
356 357 1.542108 CCAAATCTGAGATCGGGCTCC 60.542 57.143 0.00 0.00 33.95 4.70
357 358 1.414181 TCCAAATCTGAGATCGGGCTC 59.586 52.381 10.06 0.00 35.46 4.70
358 359 1.500474 TCCAAATCTGAGATCGGGCT 58.500 50.000 10.06 0.00 0.00 5.19
359 360 2.557920 ATCCAAATCTGAGATCGGGC 57.442 50.000 10.06 0.00 0.00 6.13
360 361 4.867047 CGAATATCCAAATCTGAGATCGGG 59.133 45.833 10.06 8.14 0.00 5.14
361 362 4.328440 GCGAATATCCAAATCTGAGATCGG 59.672 45.833 0.00 0.00 0.00 4.18
362 363 5.167121 AGCGAATATCCAAATCTGAGATCG 58.833 41.667 0.00 0.00 0.00 3.69
363 364 6.873076 AGAAGCGAATATCCAAATCTGAGATC 59.127 38.462 0.00 0.00 0.00 2.75
364 365 6.767456 AGAAGCGAATATCCAAATCTGAGAT 58.233 36.000 0.00 0.00 0.00 2.75
365 366 6.166984 AGAAGCGAATATCCAAATCTGAGA 57.833 37.500 0.00 0.00 0.00 3.27
366 367 6.857777 AAGAAGCGAATATCCAAATCTGAG 57.142 37.500 0.00 0.00 0.00 3.35
367 368 7.500992 AGTAAGAAGCGAATATCCAAATCTGA 58.499 34.615 0.00 0.00 0.00 3.27
368 369 7.721286 AGTAAGAAGCGAATATCCAAATCTG 57.279 36.000 0.00 0.00 0.00 2.90
369 370 7.169982 CGAAGTAAGAAGCGAATATCCAAATCT 59.830 37.037 0.00 0.00 0.00 2.40
370 371 7.169308 TCGAAGTAAGAAGCGAATATCCAAATC 59.831 37.037 0.00 0.00 0.00 2.17
371 372 6.984474 TCGAAGTAAGAAGCGAATATCCAAAT 59.016 34.615 0.00 0.00 0.00 2.32
372 373 6.334989 TCGAAGTAAGAAGCGAATATCCAAA 58.665 36.000 0.00 0.00 0.00 3.28
373 374 5.898174 TCGAAGTAAGAAGCGAATATCCAA 58.102 37.500 0.00 0.00 0.00 3.53
374 375 5.067413 ACTCGAAGTAAGAAGCGAATATCCA 59.933 40.000 0.00 0.00 31.89 3.41
375 376 5.521544 ACTCGAAGTAAGAAGCGAATATCC 58.478 41.667 0.00 0.00 31.89 2.59
376 377 6.200100 TGACTCGAAGTAAGAAGCGAATATC 58.800 40.000 0.00 0.00 31.89 1.63
377 378 6.132791 TGACTCGAAGTAAGAAGCGAATAT 57.867 37.500 0.00 0.00 31.89 1.28
378 379 5.123502 ACTGACTCGAAGTAAGAAGCGAATA 59.876 40.000 6.43 0.00 30.89 1.75
379 380 4.082679 ACTGACTCGAAGTAAGAAGCGAAT 60.083 41.667 6.43 0.00 30.89 3.34
380 381 3.252701 ACTGACTCGAAGTAAGAAGCGAA 59.747 43.478 6.43 0.00 30.89 4.70
381 382 2.812591 ACTGACTCGAAGTAAGAAGCGA 59.187 45.455 6.43 0.00 30.89 4.93
382 383 3.204597 ACTGACTCGAAGTAAGAAGCG 57.795 47.619 6.43 0.00 30.89 4.68
471 472 0.899720 TGGTGCTTAAGGTCTACCCG 59.100 55.000 4.29 0.00 38.74 5.28
476 477 2.656947 TTGCTTGGTGCTTAAGGTCT 57.343 45.000 4.29 0.00 43.37 3.85
539 543 1.425428 CAGAAACCTCCGCGAATGC 59.575 57.895 8.23 0.00 37.91 3.56
540 544 1.298157 TGCAGAAACCTCCGCGAATG 61.298 55.000 8.23 0.00 0.00 2.67
541 545 1.003839 TGCAGAAACCTCCGCGAAT 60.004 52.632 8.23 0.00 0.00 3.34
542 546 1.667830 CTGCAGAAACCTCCGCGAA 60.668 57.895 8.42 0.00 0.00 4.70
544 548 3.793144 GCTGCAGAAACCTCCGCG 61.793 66.667 20.43 0.00 0.00 6.46
545 549 2.669569 TGCTGCAGAAACCTCCGC 60.670 61.111 20.43 0.00 0.00 5.54
546 550 0.886490 AAGTGCTGCAGAAACCTCCG 60.886 55.000 20.43 0.00 0.00 4.63
550 557 4.670221 CGAGATTAAAGTGCTGCAGAAACC 60.670 45.833 20.43 0.00 0.00 3.27
646 654 2.166907 TTGTTTCTCAAAAGGGCCCA 57.833 45.000 27.56 0.22 32.64 5.36
649 657 3.126073 CAGCTTTGTTTCTCAAAAGGGC 58.874 45.455 0.00 0.00 44.08 5.19
656 664 1.333619 GCCGAACAGCTTTGTTTCTCA 59.666 47.619 0.00 0.00 31.35 3.27
659 667 0.318699 GGGCCGAACAGCTTTGTTTC 60.319 55.000 0.00 0.00 31.35 2.78
678 687 4.939052 AGTCCAATATCTTACCCTCACG 57.061 45.455 0.00 0.00 0.00 4.35
684 693 4.753610 GCCCGTAAAGTCCAATATCTTACC 59.246 45.833 0.00 0.00 0.00 2.85
692 701 1.628846 AGTCAGCCCGTAAAGTCCAAT 59.371 47.619 0.00 0.00 0.00 3.16
694 703 1.053424 AAGTCAGCCCGTAAAGTCCA 58.947 50.000 0.00 0.00 0.00 4.02
695 704 1.270678 ACAAGTCAGCCCGTAAAGTCC 60.271 52.381 0.00 0.00 0.00 3.85
696 705 2.165319 ACAAGTCAGCCCGTAAAGTC 57.835 50.000 0.00 0.00 0.00 3.01
697 706 3.514309 AGATACAAGTCAGCCCGTAAAGT 59.486 43.478 0.00 0.00 0.00 2.66
698 707 3.865745 CAGATACAAGTCAGCCCGTAAAG 59.134 47.826 0.00 0.00 0.00 1.85
699 708 3.369052 CCAGATACAAGTCAGCCCGTAAA 60.369 47.826 0.00 0.00 0.00 2.01
700 709 2.167693 CCAGATACAAGTCAGCCCGTAA 59.832 50.000 0.00 0.00 0.00 3.18
701 710 1.754803 CCAGATACAAGTCAGCCCGTA 59.245 52.381 0.00 0.00 0.00 4.02
702 711 0.537188 CCAGATACAAGTCAGCCCGT 59.463 55.000 0.00 0.00 0.00 5.28
703 712 0.824109 TCCAGATACAAGTCAGCCCG 59.176 55.000 0.00 0.00 0.00 6.13
742 831 3.512724 CACCATGCTCCAGGATTCTTTTT 59.487 43.478 0.00 0.00 0.00 1.94
747 837 1.065199 TGTCACCATGCTCCAGGATTC 60.065 52.381 0.00 0.00 0.00 2.52
750 840 1.679311 GTGTCACCATGCTCCAGGA 59.321 57.895 0.00 0.00 0.00 3.86
751 841 1.742880 CGTGTCACCATGCTCCAGG 60.743 63.158 0.00 0.00 0.00 4.45
759 849 2.733218 CGTCGTGCGTGTCACCAT 60.733 61.111 0.00 0.00 42.69 3.55
785 875 4.101585 TCCTATGGTCATCAGTGGAATGAC 59.898 45.833 13.90 13.90 42.74 3.06
809 899 2.430921 CACTCGTCTGCACGTCCC 60.431 66.667 0.00 0.00 46.76 4.46
836 926 1.690219 TTTGTTTGGGTGCCGGCAAT 61.690 50.000 34.66 0.00 0.00 3.56
888 978 2.222027 GGTGTGAGGTTGAACAAGGAG 58.778 52.381 0.00 0.00 0.00 3.69
894 984 1.073923 AGGATGGGTGTGAGGTTGAAC 59.926 52.381 0.00 0.00 0.00 3.18
900 996 0.326048 AGGAGAGGATGGGTGTGAGG 60.326 60.000 0.00 0.00 0.00 3.86
906 1002 0.842635 GCATGAAGGAGAGGATGGGT 59.157 55.000 0.00 0.00 0.00 4.51
980 1077 0.678048 CAGCTAGCCCCCTGTTGAAC 60.678 60.000 12.13 0.00 0.00 3.18
1015 1112 1.308998 AGCAACCTTGAACTTGGACG 58.691 50.000 0.00 0.00 0.00 4.79
1023 1120 3.067180 CAGAAAGCAGAAGCAACCTTGAA 59.933 43.478 0.00 0.00 45.49 2.69
1150 1254 7.669427 TGAATTTGTTGAAAGCAGATGGTATT 58.331 30.769 0.00 0.00 0.00 1.89
1155 1259 4.387862 GGCTGAATTTGTTGAAAGCAGATG 59.612 41.667 0.00 0.00 32.84 2.90
1194 1298 3.890147 AGGGTTTTGGCAATTTGTACGTA 59.110 39.130 0.00 0.00 0.00 3.57
1195 1299 2.696187 AGGGTTTTGGCAATTTGTACGT 59.304 40.909 0.00 0.00 0.00 3.57
1220 1324 4.858935 TGAAAAGGAGCATGAAAGTTTCG 58.141 39.130 10.92 0.00 0.00 3.46
1225 1329 8.674263 ACTATCTATGAAAAGGAGCATGAAAG 57.326 34.615 0.00 0.00 0.00 2.62
1266 1370 0.033796 AATCCGTCGGAGGGAGTACA 60.034 55.000 22.36 1.89 35.39 2.90
1278 1382 3.340337 GCTGATTTAGCCAAATCCGTC 57.660 47.619 13.93 2.57 46.42 4.79
1299 1403 7.556844 AGTCACTTCGATCCATATTAACTGTT 58.443 34.615 0.00 0.00 0.00 3.16
1345 1449 2.117156 GCAATGCCAGGCGTCAGAT 61.117 57.895 6.62 0.00 0.00 2.90
1346 1450 2.747460 GCAATGCCAGGCGTCAGA 60.747 61.111 6.62 0.00 0.00 3.27
1347 1451 2.749044 AGCAATGCCAGGCGTCAG 60.749 61.111 6.62 4.06 34.54 3.51
1348 1452 3.057548 CAGCAATGCCAGGCGTCA 61.058 61.111 6.62 0.00 34.54 4.35
1349 1453 1.865788 TTTCAGCAATGCCAGGCGTC 61.866 55.000 6.62 0.00 34.54 5.19
1359 1467 3.261390 TGCCCTGCTTTAATTTCAGCAAT 59.739 39.130 11.28 0.00 45.36 3.56
1388 1496 1.338020 CTTGTGGTTGGAAGGTTCAGC 59.662 52.381 0.00 0.00 0.00 4.26
1738 1852 2.051804 GAGGCGCACGAATGGAATGG 62.052 60.000 10.83 0.00 0.00 3.16
1749 1863 0.447801 AAATCATTCACGAGGCGCAC 59.552 50.000 10.83 0.96 0.00 5.34
1756 1870 6.183360 TGGAAACACAAGAAAATCATTCACGA 60.183 34.615 0.00 0.00 33.40 4.35
1762 1876 5.279156 GCCTCTGGAAACACAAGAAAATCAT 60.279 40.000 0.00 0.00 35.60 2.45
1767 1881 2.951642 CTGCCTCTGGAAACACAAGAAA 59.048 45.455 0.00 0.00 35.60 2.52
1821 1935 1.239968 CCTGGACAAGGTTCAGCTGC 61.240 60.000 9.47 0.00 37.81 5.25
1833 1947 2.368875 GTTCTTGAGGTCTTCCTGGACA 59.631 50.000 0.00 0.00 45.24 4.02
1842 1956 1.674057 CCTGGCGTTCTTGAGGTCT 59.326 57.895 0.00 0.00 0.00 3.85
1883 1997 2.284995 GGACCTGGGCTCTGTCCT 60.285 66.667 16.05 0.00 44.17 3.85
1969 2083 4.765449 TTCTGCTCGCCGCTGCAT 62.765 61.111 0.00 0.00 38.59 3.96
1983 2097 1.733402 CGATCTCCAGCGCCTCTTCT 61.733 60.000 2.29 0.00 0.00 2.85
2152 2266 4.335647 CGCCAGCTCACCCTTGGT 62.336 66.667 0.00 0.00 35.62 3.67
2178 2292 1.676967 GGCTGAGTTCTTGGCCTGG 60.677 63.158 3.32 0.00 41.20 4.45
2193 2307 3.241530 TCAACACGGCTGAGGGCT 61.242 61.111 0.00 0.00 41.46 5.19
2196 2310 1.734477 CTCGTCAACACGGCTGAGG 60.734 63.158 0.00 0.00 46.70 3.86
2207 2321 1.585006 GTCTTCTCGGCCTCGTCAA 59.415 57.895 0.00 0.00 37.69 3.18
2208 2322 2.341101 GGTCTTCTCGGCCTCGTCA 61.341 63.158 0.00 0.00 37.69 4.35
2231 2345 4.778958 TCTCCATCCTTTTTGCATTTCCAT 59.221 37.500 0.00 0.00 0.00 3.41
2232 2346 4.158786 TCTCCATCCTTTTTGCATTTCCA 58.841 39.130 0.00 0.00 0.00 3.53
2256 2370 1.557269 GGGTCACCTCAGCCATCAGT 61.557 60.000 0.00 0.00 33.76 3.41
2272 2386 3.382111 CTCAGACTTGAGCCGGGT 58.618 61.111 5.45 5.45 43.98 5.28
2291 2405 1.352352 CTCCTTTTTCTCTGCTCCCCA 59.648 52.381 0.00 0.00 0.00 4.96
2294 2408 2.083002 CTGCTCCTTTTTCTCTGCTCC 58.917 52.381 0.00 0.00 0.00 4.70
2337 2451 2.441901 AGCTCTGAGGCCTCCGAG 60.442 66.667 36.90 36.90 41.82 4.63
2340 2454 4.527583 CGCAGCTCTGAGGCCTCC 62.528 72.222 29.95 14.36 0.00 4.30
2415 2529 1.761174 GACCTTGAGCCCCTTGACA 59.239 57.895 0.00 0.00 0.00 3.58
2419 2533 1.201429 ATGTCGACCTTGAGCCCCTT 61.201 55.000 14.12 0.00 0.00 3.95
2463 2577 2.512515 GCCGACTGGTCTGCATCC 60.513 66.667 11.23 0.00 39.24 3.51
2529 2643 4.074259 TGGATTTGTTCAGTGAGGTGATG 58.926 43.478 0.00 0.00 0.00 3.07
2571 2685 3.492102 TCCTGGAAACTCTTTGTCAGG 57.508 47.619 0.00 0.00 39.80 3.86
2587 2701 2.031516 CCTGCGACTGTGCTTCCTG 61.032 63.158 0.00 0.00 35.36 3.86
2605 2719 1.261480 TTCTCTGTCAGCTGGAGGAC 58.739 55.000 15.13 4.99 34.63 3.85
2625 2739 2.801631 GCCCTCTGATGCCGTAGCT 61.802 63.158 0.00 0.00 40.80 3.32
2629 2743 3.376935 CTTCGCCCTCTGATGCCGT 62.377 63.158 0.00 0.00 0.00 5.68
2649 2763 2.969628 ATCCTTCCTTGTACTCGCTG 57.030 50.000 0.00 0.00 0.00 5.18
2688 2802 2.692557 CTCCTTCCTCATGATGTCGAGT 59.307 50.000 0.00 0.00 0.00 4.18
2698 2812 2.172293 GTTCAGATGCCTCCTTCCTCAT 59.828 50.000 0.00 0.00 0.00 2.90
2727 2841 1.808945 GACTTCAGGCTGTCAATGGTG 59.191 52.381 15.27 0.14 33.75 4.17
2739 2853 1.000283 AGCTCGTGTTCAGACTTCAGG 60.000 52.381 0.00 0.00 0.00 3.86
2744 2858 2.505405 TCAGTAGCTCGTGTTCAGACT 58.495 47.619 0.00 0.00 0.00 3.24
2820 2934 1.367471 CTTGTCTCCACCGAGCACA 59.633 57.895 0.00 0.00 35.94 4.57
2829 2943 0.687354 GAAGCCTCACCTTGTCTCCA 59.313 55.000 0.00 0.00 0.00 3.86
2859 2973 1.383664 CTCCTCCCTGGCCTCATCA 60.384 63.158 3.32 0.00 35.26 3.07
2898 3012 2.622436 GCAACTGCTAATTCCTCGACT 58.378 47.619 0.00 0.00 38.21 4.18
2915 3029 1.269723 CTGACACCTGACGTAGAGCAA 59.730 52.381 0.00 0.00 0.00 3.91
2978 3092 1.073964 CTGTGCGTGATCCAACTCAG 58.926 55.000 0.00 0.00 0.00 3.35
2979 3093 0.950555 GCTGTGCGTGATCCAACTCA 60.951 55.000 0.00 0.00 0.00 3.41
2983 3097 0.250252 TGAAGCTGTGCGTGATCCAA 60.250 50.000 0.00 0.00 0.00 3.53
2991 3105 1.135046 CGGATATCTGAAGCTGTGCG 58.865 55.000 5.54 0.00 0.00 5.34
3013 3127 3.669023 GCATTCTTGCTTTCCGTCTTCAG 60.669 47.826 0.00 0.00 45.77 3.02
3027 3141 4.756642 TGGTACTTGTCTTCTGCATTCTTG 59.243 41.667 0.00 0.00 0.00 3.02
3032 3146 2.304180 AGCTGGTACTTGTCTTCTGCAT 59.696 45.455 0.00 0.00 0.00 3.96
3033 3147 1.694150 AGCTGGTACTTGTCTTCTGCA 59.306 47.619 0.00 0.00 0.00 4.41
3089 3203 2.807472 GCCTCTGATTCCAGCATCTCAG 60.807 54.545 0.00 0.00 40.20 3.35
3138 3252 7.405292 TGAGGTAGTTGGATTCATCAAGAATT 58.595 34.615 0.00 0.00 46.76 2.17
3388 3502 2.498167 GGCATCCATCATGGTACTGTC 58.502 52.381 2.79 0.00 39.03 3.51
3391 3505 0.250467 GCGGCATCCATCATGGTACT 60.250 55.000 2.79 0.00 39.03 2.73
3417 3531 2.101249 CACCATTGGTTGTTCTGCACTT 59.899 45.455 5.34 0.00 31.02 3.16
3552 3666 3.191162 CCATCAATTTTGAGGCTTCGTCA 59.809 43.478 0.00 0.00 41.08 4.35
3578 3692 4.441695 CTGCCCTCGAGCTTGCGA 62.442 66.667 6.99 0.00 38.74 5.10
3726 3840 4.357142 CATCCATCAATTTTGAGGCTTCG 58.643 43.478 0.00 0.00 41.08 3.79
3905 4019 1.138247 GCCTCTGCCAGCAATTTCG 59.862 57.895 0.00 0.00 0.00 3.46
3996 4110 0.835941 GGAGCATGGTGTCCATCTCT 59.164 55.000 0.00 11.21 43.15 3.10
4120 4234 1.273606 CTTCTCTTCCTCTGCCGTCAA 59.726 52.381 0.00 0.00 0.00 3.18
4204 4318 1.535685 GCAGGCCATCATTCTCCCT 59.464 57.895 5.01 0.00 0.00 4.20
4248 4362 3.793144 GCAAGCTCGTCGGCCTTG 61.793 66.667 16.42 16.42 0.00 3.61
4263 4377 2.032376 TCCACGAGCATTGCAGCA 59.968 55.556 11.91 0.00 36.85 4.41
4350 4464 2.118313 TGGGTGAGCACATCATCTTG 57.882 50.000 2.75 0.00 40.92 3.02
4365 4479 3.370231 GCGGCGTTTTCCATGGGT 61.370 61.111 13.02 0.00 0.00 4.51
4368 4482 2.501650 CGTGCGGCGTTTTCCATG 60.502 61.111 9.37 0.00 35.54 3.66
4383 4497 2.430546 GATCTTCATGATCGCCTCGT 57.569 50.000 0.00 0.00 41.68 4.18
4464 4578 1.142667 TCATGTTTCACCTGCCTGACA 59.857 47.619 0.00 0.00 0.00 3.58
5188 5307 1.362237 TCAAAGGCCCCTTGGATGAAT 59.638 47.619 13.74 0.00 36.26 2.57
5202 5321 4.398319 TCTTTTTCCTGCTACCTCAAAGG 58.602 43.478 0.00 0.00 42.49 3.11
5256 5375 3.009916 ACATTCTTCAGTCTCAAGCCCAT 59.990 43.478 0.00 0.00 0.00 4.00
5260 5379 4.997395 TGGTAACATTCTTCAGTCTCAAGC 59.003 41.667 0.00 0.00 46.17 4.01
5555 5675 3.928375 GCTATTGTTTGATTGGCAACCAG 59.072 43.478 0.00 0.00 35.91 4.00
5559 5679 3.995705 GCTTGCTATTGTTTGATTGGCAA 59.004 39.130 0.68 0.68 36.86 4.52
5688 5812 3.817084 CAGTTCTTGTGGAGAAATCAGCA 59.183 43.478 0.00 0.00 45.59 4.41
5699 5823 7.360776 GCTTTCTTTATCTCTCAGTTCTTGTGG 60.361 40.741 0.00 0.00 0.00 4.17
5809 5934 2.965572 AACTGTGTGTTGCAAGCAAT 57.034 40.000 11.00 0.00 38.28 3.56
5912 6037 9.888878 GTAAGCATTAGTTAGATCGTGTACATA 57.111 33.333 0.00 0.00 0.00 2.29
5963 6088 1.526041 CGCAGCTATTCATGTCTCTGC 59.474 52.381 13.77 13.77 42.30 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.