Multiple sequence alignment - TraesCS1A01G194200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G194200 chr1A 100.000 2805 0 0 1 2805 351477062 351474258 0.000000e+00 5180.0
1 TraesCS1A01G194200 chr1B 92.804 1473 67 21 701 2146 378945336 378943876 0.000000e+00 2097.0
2 TraesCS1A01G194200 chr1B 92.949 312 17 1 2200 2506 378943863 378943552 1.530000e-122 449.0
3 TraesCS1A01G194200 chr1B 84.735 321 17 10 305 602 378947625 378947314 2.730000e-75 292.0
4 TraesCS1A01G194200 chr1B 92.308 65 5 0 608 672 378945485 378945421 2.970000e-15 93.5
5 TraesCS1A01G194200 chr1D 92.308 1118 48 14 1059 2145 279235082 279233972 0.000000e+00 1554.0
6 TraesCS1A01G194200 chr1D 89.680 562 19 12 466 1003 279236024 279235478 0.000000e+00 680.0
7 TraesCS1A01G194200 chr1D 93.061 245 9 4 2200 2440 279233958 279233718 4.450000e-93 351.0
8 TraesCS1A01G194200 chr1D 87.975 158 13 4 42 197 279236439 279236286 6.170000e-42 182.0
9 TraesCS1A01G194200 chr5B 95.939 197 8 0 1305 1501 390549366 390549170 1.250000e-83 320.0
10 TraesCS1A01G194200 chr2B 96.296 81 3 0 1471 1551 90442542 90442622 1.750000e-27 134.0
11 TraesCS1A01G194200 chr2B 83.740 123 16 3 2208 2328 799286558 799286678 2.280000e-21 113.0
12 TraesCS1A01G194200 chr2D 82.906 117 20 0 2211 2327 642416245 642416129 3.820000e-19 106.0
13 TraesCS1A01G194200 chr7B 72.149 377 81 22 1382 1750 512353536 512353896 2.970000e-15 93.5
14 TraesCS1A01G194200 chr7A 74.561 228 48 9 1382 1604 553229367 553229589 1.070000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G194200 chr1A 351474258 351477062 2804 True 5180.000 5180 100.000 1 2805 1 chr1A.!!$R1 2804
1 TraesCS1A01G194200 chr1B 378943552 378947625 4073 True 732.875 2097 90.699 305 2506 4 chr1B.!!$R1 2201
2 TraesCS1A01G194200 chr1D 279233718 279236439 2721 True 691.750 1554 90.756 42 2440 4 chr1D.!!$R1 2398

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.180406 GCGGGAGGCAAAGAATCCTA 59.82 55.0 0.0 0.0 42.87 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1927 4237 0.554305 TGGAATGATCAGCCTGCCAT 59.446 50.0 15.95 0.0 0.0 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.514417 GCGGGAGGCAAAGAATCC 58.486 61.111 0.00 0.00 42.87 3.01
18 19 1.077429 GCGGGAGGCAAAGAATCCT 60.077 57.895 0.00 0.00 42.87 3.24
19 20 0.180406 GCGGGAGGCAAAGAATCCTA 59.820 55.000 0.00 0.00 42.87 2.94
20 21 1.811941 GCGGGAGGCAAAGAATCCTAG 60.812 57.143 0.00 0.00 42.87 3.02
21 22 1.762957 CGGGAGGCAAAGAATCCTAGA 59.237 52.381 0.00 0.00 33.40 2.43
22 23 2.370189 CGGGAGGCAAAGAATCCTAGAT 59.630 50.000 0.00 0.00 33.40 1.98
23 24 3.181450 CGGGAGGCAAAGAATCCTAGATT 60.181 47.826 0.00 0.00 33.40 2.40
24 25 4.687219 CGGGAGGCAAAGAATCCTAGATTT 60.687 45.833 0.00 0.00 33.40 2.17
25 26 5.204292 GGGAGGCAAAGAATCCTAGATTTT 58.796 41.667 0.00 0.00 33.40 1.82
26 27 5.658634 GGGAGGCAAAGAATCCTAGATTTTT 59.341 40.000 0.00 0.00 33.40 1.94
27 28 6.406288 GGGAGGCAAAGAATCCTAGATTTTTG 60.406 42.308 14.12 14.12 33.40 2.44
28 29 6.406288 GGAGGCAAAGAATCCTAGATTTTTGG 60.406 42.308 17.07 8.04 31.71 3.28
29 30 6.256053 AGGCAAAGAATCCTAGATTTTTGGA 58.744 36.000 17.07 0.00 0.00 3.53
30 31 6.379417 AGGCAAAGAATCCTAGATTTTTGGAG 59.621 38.462 17.07 5.87 32.95 3.86
31 32 6.406288 GGCAAAGAATCCTAGATTTTTGGAGG 60.406 42.308 17.07 0.00 32.95 4.30
32 33 6.567959 CAAAGAATCCTAGATTTTTGGAGGC 58.432 40.000 0.00 0.00 32.95 4.70
33 34 4.455606 AGAATCCTAGATTTTTGGAGGCG 58.544 43.478 0.00 0.00 32.95 5.52
34 35 2.710096 TCCTAGATTTTTGGAGGCGG 57.290 50.000 0.00 0.00 0.00 6.13
35 36 1.025041 CCTAGATTTTTGGAGGCGGC 58.975 55.000 0.00 0.00 0.00 6.53
36 37 0.657840 CTAGATTTTTGGAGGCGGCG 59.342 55.000 0.51 0.51 0.00 6.46
37 38 0.746563 TAGATTTTTGGAGGCGGCGG 60.747 55.000 9.78 0.00 0.00 6.13
38 39 3.699955 GATTTTTGGAGGCGGCGGC 62.700 63.158 27.24 27.24 38.90 6.53
39 40 4.966787 TTTTTGGAGGCGGCGGCT 62.967 61.111 36.82 36.82 42.48 5.52
55 56 2.610727 GCGGCTGGCCTCTAATTAGTAG 60.611 54.545 12.19 8.28 34.80 2.57
64 65 5.071384 GGCCTCTAATTAGTAGCCCAAAGTA 59.929 44.000 25.60 1.14 36.93 2.24
69 70 9.930693 CTCTAATTAGTAGCCCAAAGTATAAGG 57.069 37.037 12.19 0.00 0.00 2.69
70 71 9.664777 TCTAATTAGTAGCCCAAAGTATAAGGA 57.335 33.333 12.19 0.00 0.00 3.36
71 72 9.708092 CTAATTAGTAGCCCAAAGTATAAGGAC 57.292 37.037 4.18 0.00 0.00 3.85
72 73 7.932683 ATTAGTAGCCCAAAGTATAAGGACT 57.067 36.000 0.00 0.00 0.00 3.85
74 75 6.236558 AGTAGCCCAAAGTATAAGGACTTC 57.763 41.667 0.00 0.00 38.75 3.01
75 76 5.724854 AGTAGCCCAAAGTATAAGGACTTCA 59.275 40.000 0.00 0.00 38.75 3.02
91 92 7.251321 AGGACTTCACTACAAATCTCTCAAT 57.749 36.000 0.00 0.00 0.00 2.57
104 105 8.992073 ACAAATCTCTCAATTTTTAAACATGGC 58.008 29.630 0.00 0.00 0.00 4.40
105 106 8.991026 CAAATCTCTCAATTTTTAAACATGGCA 58.009 29.630 0.00 0.00 0.00 4.92
107 108 9.558396 AATCTCTCAATTTTTAAACATGGCAAA 57.442 25.926 0.00 0.00 0.00 3.68
108 109 9.729281 ATCTCTCAATTTTTAAACATGGCAAAT 57.271 25.926 0.00 0.00 0.00 2.32
116 117 6.994868 TTTAAACATGGCAAATTACGTGTC 57.005 33.333 0.00 0.00 35.90 3.67
132 133 1.376812 GTCGTGAGCCCGGGAATTT 60.377 57.895 29.31 5.67 0.00 1.82
133 134 1.376683 TCGTGAGCCCGGGAATTTG 60.377 57.895 29.31 10.73 0.00 2.32
134 135 1.674322 CGTGAGCCCGGGAATTTGT 60.674 57.895 29.31 0.00 0.00 2.83
201 235 4.949856 AGGATTTACCATGCTTGTTGTAGG 59.050 41.667 0.00 0.00 42.04 3.18
209 243 1.539388 TGCTTGTTGTAGGAATTGCCG 59.461 47.619 0.00 0.00 43.43 5.69
215 249 0.323302 TGTAGGAATTGCCGTGCTCA 59.677 50.000 0.00 0.00 43.43 4.26
231 265 4.550831 CGTGCTCAAGATAGGTAATTTGCG 60.551 45.833 0.00 0.00 0.00 4.85
273 307 3.472652 TGCTTACAAAACCGATGTCAGT 58.527 40.909 0.00 0.00 32.27 3.41
274 308 3.880490 TGCTTACAAAACCGATGTCAGTT 59.120 39.130 0.00 0.00 32.27 3.16
316 350 8.811017 AGCTATAGTCAATATACAAGATGCAGT 58.189 33.333 0.84 0.00 0.00 4.40
364 398 4.701956 ACAAAAACGAATAGAGCATGGG 57.298 40.909 0.00 0.00 0.00 4.00
369 403 2.498167 ACGAATAGAGCATGGGCATTC 58.502 47.619 0.00 0.00 44.61 2.67
387 421 1.136774 CCGCTAAAAAGAAGGGCGC 59.863 57.895 0.00 0.00 43.70 6.53
423 457 0.685660 GATCCCGTATCCCAACCCTC 59.314 60.000 0.00 0.00 0.00 4.30
449 483 3.246226 CCGCTGCTAGTATTTCACATGAC 59.754 47.826 0.00 0.00 0.00 3.06
453 487 6.276847 GCTGCTAGTATTTCACATGACTACT 58.723 40.000 0.00 7.90 31.56 2.57
454 488 6.199908 GCTGCTAGTATTTCACATGACTACTG 59.800 42.308 0.00 0.00 30.21 2.74
455 489 7.170393 TGCTAGTATTTCACATGACTACTGT 57.830 36.000 0.00 0.00 30.21 3.55
456 490 7.611770 TGCTAGTATTTCACATGACTACTGTT 58.388 34.615 0.00 0.00 30.21 3.16
458 492 6.727824 AGTATTTCACATGACTACTGTTGC 57.272 37.500 0.00 0.00 0.00 4.17
459 493 6.230472 AGTATTTCACATGACTACTGTTGCA 58.770 36.000 0.00 0.00 0.00 4.08
460 494 6.881065 AGTATTTCACATGACTACTGTTGCAT 59.119 34.615 0.00 0.00 0.00 3.96
461 495 5.361135 TTTCACATGACTACTGTTGCATG 57.639 39.130 17.47 17.47 42.75 4.06
462 496 3.337358 TCACATGACTACTGTTGCATGG 58.663 45.455 20.51 13.89 41.71 3.66
463 497 2.086869 ACATGACTACTGTTGCATGGC 58.913 47.619 20.51 0.00 41.71 4.40
464 498 1.402968 CATGACTACTGTTGCATGGCC 59.597 52.381 0.00 0.00 35.64 5.36
500 534 1.040646 GGACTCTCGTGCCATCCATA 58.959 55.000 0.00 0.00 0.00 2.74
501 535 1.620819 GGACTCTCGTGCCATCCATAT 59.379 52.381 0.00 0.00 0.00 1.78
546 580 2.922950 CGGGTCGGAAACAGACGGA 61.923 63.158 0.00 0.00 39.38 4.69
547 581 1.373873 GGGTCGGAAACAGACGGAC 60.374 63.158 0.00 0.00 39.38 4.79
601 2484 2.159558 CGTCGATCTTCGTTTCCTCTCA 60.160 50.000 0.00 0.00 41.35 3.27
602 2485 3.487711 CGTCGATCTTCGTTTCCTCTCAT 60.488 47.826 0.00 0.00 41.35 2.90
603 2486 4.260661 CGTCGATCTTCGTTTCCTCTCATA 60.261 45.833 0.00 0.00 41.35 2.15
604 2487 5.579718 GTCGATCTTCGTTTCCTCTCATAA 58.420 41.667 0.00 0.00 41.35 1.90
605 2488 6.210078 GTCGATCTTCGTTTCCTCTCATAAT 58.790 40.000 0.00 0.00 41.35 1.28
606 2489 7.361127 GTCGATCTTCGTTTCCTCTCATAATA 58.639 38.462 0.00 0.00 41.35 0.98
666 2549 1.520600 GGCCGTGAAACCGAAACCAT 61.521 55.000 0.00 0.00 0.00 3.55
808 2746 2.356780 CCCCTACACGTGTCCTCCC 61.357 68.421 27.16 0.00 0.00 4.30
822 2760 3.164977 TCCCACCTTCACGTGCCA 61.165 61.111 11.67 0.00 32.10 4.92
849 2787 4.485834 TTCGCGCGCGTACTCCAT 62.486 61.111 46.54 0.00 40.74 3.41
921 2861 4.400251 CCCACCCTCTCCCCGTCT 62.400 72.222 0.00 0.00 0.00 4.18
922 2862 2.284699 CCACCCTCTCCCCGTCTT 60.285 66.667 0.00 0.00 0.00 3.01
923 2863 2.660064 CCACCCTCTCCCCGTCTTG 61.660 68.421 0.00 0.00 0.00 3.02
924 2864 1.609501 CACCCTCTCCCCGTCTTGA 60.610 63.158 0.00 0.00 0.00 3.02
925 2865 1.305381 ACCCTCTCCCCGTCTTGAG 60.305 63.158 0.00 0.00 0.00 3.02
1264 3547 4.421479 AGGACTGCTTCGACGGCG 62.421 66.667 2.87 2.87 39.35 6.46
1440 3723 4.498520 CACGAGGTGGAGCGCGAT 62.499 66.667 12.10 1.23 0.00 4.58
1642 3925 4.407496 TCGTTCGCGACCATTTTTATTT 57.593 36.364 9.15 0.00 45.62 1.40
1674 3984 2.271800 GGTCGATCGAATCACTTGCTT 58.728 47.619 21.31 0.00 0.00 3.91
1681 3991 6.259387 TCGATCGAATCACTTGCTTACTAGTA 59.741 38.462 16.99 0.00 30.31 1.82
1682 3992 6.575572 CGATCGAATCACTTGCTTACTAGTAG 59.424 42.308 10.26 0.00 30.31 2.57
1755 4065 1.378124 GAGGACGAGGACGAGGAAGG 61.378 65.000 0.00 0.00 42.66 3.46
1817 4127 2.172483 CTGCTGACCCTAGCCGTTGT 62.172 60.000 0.00 0.00 43.02 3.32
1821 4131 0.606604 TGACCCTAGCCGTTGTTCTC 59.393 55.000 0.00 0.00 0.00 2.87
1861 4171 4.103357 CGGTCTACTGTACAATACTGCAC 58.897 47.826 0.00 0.00 0.00 4.57
1927 4237 1.375396 CATCCTCGGCCGTGTGAAA 60.375 57.895 27.15 2.82 0.00 2.69
1942 4259 2.029623 GTGAAATGGCAGGCTGATCAT 58.970 47.619 20.86 17.30 0.00 2.45
1956 4273 4.718774 GGCTGATCATTCCAGGGATAGATA 59.281 45.833 0.00 0.00 32.51 1.98
2043 4360 0.037326 GTCACCTCAGGCGTCAATCA 60.037 55.000 0.00 0.00 0.00 2.57
2044 4361 0.684535 TCACCTCAGGCGTCAATCAA 59.315 50.000 0.00 0.00 0.00 2.57
2045 4362 1.278985 TCACCTCAGGCGTCAATCAAT 59.721 47.619 0.00 0.00 0.00 2.57
2085 4414 5.755375 TGCTCTACTGAAGTTCTTTGTTCTG 59.245 40.000 4.17 0.00 0.00 3.02
2113 4442 0.824109 ACAATCGCCTGCTGCTACTA 59.176 50.000 0.00 0.00 38.05 1.82
2147 4476 7.838884 ACCTTTCTTGTACTAATCACTACTCC 58.161 38.462 0.00 0.00 0.00 3.85
2148 4477 7.674772 ACCTTTCTTGTACTAATCACTACTCCT 59.325 37.037 0.00 0.00 0.00 3.69
2150 4479 9.575783 CTTTCTTGTACTAATCACTACTCCTTC 57.424 37.037 0.00 0.00 0.00 3.46
2151 4480 7.317842 TCTTGTACTAATCACTACTCCTTCG 57.682 40.000 0.00 0.00 0.00 3.79
2152 4481 5.496133 TGTACTAATCACTACTCCTTCGC 57.504 43.478 0.00 0.00 0.00 4.70
2153 4482 4.337555 TGTACTAATCACTACTCCTTCGCC 59.662 45.833 0.00 0.00 0.00 5.54
2155 4484 0.460311 AATCACTACTCCTTCGCCCG 59.540 55.000 0.00 0.00 0.00 6.13
2156 4485 0.395311 ATCACTACTCCTTCGCCCGA 60.395 55.000 0.00 0.00 0.00 5.14
2157 4486 0.609957 TCACTACTCCTTCGCCCGAA 60.610 55.000 2.92 2.92 0.00 4.30
2158 4487 0.245539 CACTACTCCTTCGCCCGAAA 59.754 55.000 4.58 0.00 33.34 3.46
2159 4488 0.971386 ACTACTCCTTCGCCCGAAAA 59.029 50.000 4.58 0.00 33.34 2.29
2160 4489 1.345415 ACTACTCCTTCGCCCGAAAAA 59.655 47.619 4.58 0.00 33.34 1.94
2161 4490 2.000447 CTACTCCTTCGCCCGAAAAAG 59.000 52.381 4.58 7.22 33.34 2.27
2162 4491 1.235281 ACTCCTTCGCCCGAAAAAGC 61.235 55.000 4.58 0.00 33.34 3.51
2163 4492 0.955919 CTCCTTCGCCCGAAAAAGCT 60.956 55.000 4.58 0.00 33.34 3.74
2164 4493 0.536460 TCCTTCGCCCGAAAAAGCTT 60.536 50.000 4.58 0.00 33.34 3.74
2165 4494 1.161843 CCTTCGCCCGAAAAAGCTTA 58.838 50.000 0.00 0.00 33.34 3.09
2166 4495 1.743394 CCTTCGCCCGAAAAAGCTTAT 59.257 47.619 0.00 0.00 33.34 1.73
2167 4496 2.223272 CCTTCGCCCGAAAAAGCTTATC 60.223 50.000 0.00 0.21 33.34 1.75
2168 4497 1.375551 TCGCCCGAAAAAGCTTATCC 58.624 50.000 0.00 0.00 0.00 2.59
2169 4498 0.380733 CGCCCGAAAAAGCTTATCCC 59.619 55.000 0.00 0.00 0.00 3.85
2170 4499 1.470051 GCCCGAAAAAGCTTATCCCA 58.530 50.000 0.00 0.00 0.00 4.37
2171 4500 1.822371 GCCCGAAAAAGCTTATCCCAA 59.178 47.619 0.00 0.00 0.00 4.12
2172 4501 2.159240 GCCCGAAAAAGCTTATCCCAAG 60.159 50.000 0.00 0.00 0.00 3.61
2173 4502 3.089284 CCCGAAAAAGCTTATCCCAAGT 58.911 45.455 0.00 0.00 0.00 3.16
2174 4503 3.509967 CCCGAAAAAGCTTATCCCAAGTT 59.490 43.478 0.00 0.00 0.00 2.66
2175 4504 4.021456 CCCGAAAAAGCTTATCCCAAGTTT 60.021 41.667 0.00 0.00 0.00 2.66
2176 4505 4.923281 CCGAAAAAGCTTATCCCAAGTTTG 59.077 41.667 0.00 0.00 0.00 2.93
2177 4506 5.508994 CCGAAAAAGCTTATCCCAAGTTTGT 60.509 40.000 0.00 0.00 0.00 2.83
2178 4507 5.629435 CGAAAAAGCTTATCCCAAGTTTGTC 59.371 40.000 0.00 0.00 0.00 3.18
2179 4508 5.468540 AAAAGCTTATCCCAAGTTTGTCC 57.531 39.130 0.00 0.00 0.00 4.02
2180 4509 4.388577 AAGCTTATCCCAAGTTTGTCCT 57.611 40.909 0.00 0.00 0.00 3.85
2181 4510 3.956744 AGCTTATCCCAAGTTTGTCCTC 58.043 45.455 0.00 0.00 0.00 3.71
2182 4511 3.330701 AGCTTATCCCAAGTTTGTCCTCA 59.669 43.478 0.00 0.00 0.00 3.86
2183 4512 4.079253 GCTTATCCCAAGTTTGTCCTCAA 58.921 43.478 0.00 0.00 0.00 3.02
2184 4513 4.522789 GCTTATCCCAAGTTTGTCCTCAAA 59.477 41.667 0.00 0.00 40.64 2.69
2185 4514 5.185828 GCTTATCCCAAGTTTGTCCTCAAAT 59.814 40.000 0.00 0.00 43.92 2.32
2186 4515 6.588719 TTATCCCAAGTTTGTCCTCAAATG 57.411 37.500 0.00 0.00 43.92 2.32
2187 4516 4.177537 TCCCAAGTTTGTCCTCAAATGA 57.822 40.909 0.00 0.00 43.92 2.57
2188 4517 4.541705 TCCCAAGTTTGTCCTCAAATGAA 58.458 39.130 0.00 0.00 43.92 2.57
2189 4518 5.147032 TCCCAAGTTTGTCCTCAAATGAAT 58.853 37.500 0.00 0.00 43.92 2.57
2190 4519 5.010922 TCCCAAGTTTGTCCTCAAATGAATG 59.989 40.000 0.00 0.00 43.92 2.67
2191 4520 5.221501 CCCAAGTTTGTCCTCAAATGAATGT 60.222 40.000 0.00 0.00 43.92 2.71
2192 4521 6.015519 CCCAAGTTTGTCCTCAAATGAATGTA 60.016 38.462 0.00 0.00 43.92 2.29
2193 4522 7.309990 CCCAAGTTTGTCCTCAAATGAATGTAT 60.310 37.037 0.00 0.00 43.92 2.29
2194 4523 7.756722 CCAAGTTTGTCCTCAAATGAATGTATC 59.243 37.037 0.00 0.00 43.92 2.24
2195 4524 8.517878 CAAGTTTGTCCTCAAATGAATGTATCT 58.482 33.333 0.00 0.00 43.92 1.98
2198 4527 7.792374 TTGTCCTCAAATGAATGTATCTAGC 57.208 36.000 0.00 0.00 0.00 3.42
2217 4546 2.093447 AGCACCTATAAAGCGAGCTTGT 60.093 45.455 11.38 6.20 36.26 3.16
2222 4551 5.986135 CACCTATAAAGCGAGCTTGTTATCT 59.014 40.000 11.38 0.00 36.26 1.98
2234 4563 3.686726 GCTTGTTATCTGCTGTACTGCTT 59.313 43.478 23.07 11.93 0.00 3.91
2259 4588 2.947652 TGATGCTGCTGAGCTTAATTCC 59.052 45.455 5.83 0.00 46.39 3.01
2281 4613 7.639113 TCCATTTCCTTGATGTGTAATTACC 57.361 36.000 13.01 5.32 0.00 2.85
2308 4640 1.014352 CGGGATAACCTTTGCTTCGG 58.986 55.000 0.00 0.00 36.97 4.30
2460 4798 1.818959 ATGCGTGGCCTGCAATTTGT 61.819 50.000 23.82 7.42 46.87 2.83
2461 4799 2.023223 GCGTGGCCTGCAATTTGTG 61.023 57.895 14.62 0.00 0.00 3.33
2506 4844 2.048444 AGCATGCATGTTACTCTGGG 57.952 50.000 26.79 0.00 0.00 4.45
2507 4845 1.027357 GCATGCATGTTACTCTGGGG 58.973 55.000 26.79 0.00 0.00 4.96
2508 4846 1.408683 GCATGCATGTTACTCTGGGGA 60.409 52.381 26.79 0.00 0.00 4.81
2509 4847 2.750807 GCATGCATGTTACTCTGGGGAT 60.751 50.000 26.79 0.00 0.00 3.85
2510 4848 2.715749 TGCATGTTACTCTGGGGATG 57.284 50.000 0.00 0.00 0.00 3.51
2511 4849 1.915489 TGCATGTTACTCTGGGGATGT 59.085 47.619 0.00 0.00 0.00 3.06
2512 4850 2.308570 TGCATGTTACTCTGGGGATGTT 59.691 45.455 0.00 0.00 0.00 2.71
2513 4851 3.245229 TGCATGTTACTCTGGGGATGTTT 60.245 43.478 0.00 0.00 0.00 2.83
2514 4852 3.129287 GCATGTTACTCTGGGGATGTTTG 59.871 47.826 0.00 0.00 0.00 2.93
2515 4853 4.588899 CATGTTACTCTGGGGATGTTTGA 58.411 43.478 0.00 0.00 0.00 2.69
2516 4854 4.927267 TGTTACTCTGGGGATGTTTGAT 57.073 40.909 0.00 0.00 0.00 2.57
2517 4855 5.255397 TGTTACTCTGGGGATGTTTGATT 57.745 39.130 0.00 0.00 0.00 2.57
2518 4856 5.253330 TGTTACTCTGGGGATGTTTGATTC 58.747 41.667 0.00 0.00 0.00 2.52
2519 4857 5.222027 TGTTACTCTGGGGATGTTTGATTCA 60.222 40.000 0.00 0.00 0.00 2.57
2520 4858 3.960571 ACTCTGGGGATGTTTGATTCAG 58.039 45.455 0.00 0.00 0.00 3.02
2521 4859 3.285484 CTCTGGGGATGTTTGATTCAGG 58.715 50.000 0.00 0.00 0.00 3.86
2522 4860 2.025037 TCTGGGGATGTTTGATTCAGGG 60.025 50.000 0.00 0.00 0.00 4.45
2523 4861 1.999295 TGGGGATGTTTGATTCAGGGA 59.001 47.619 0.00 0.00 0.00 4.20
2524 4862 2.291540 TGGGGATGTTTGATTCAGGGAC 60.292 50.000 0.00 0.00 0.00 4.46
2525 4863 2.024941 GGGGATGTTTGATTCAGGGACT 60.025 50.000 0.00 0.00 43.88 3.85
2526 4864 3.564352 GGGGATGTTTGATTCAGGGACTT 60.564 47.826 0.00 0.00 34.60 3.01
2527 4865 4.089361 GGGATGTTTGATTCAGGGACTTT 58.911 43.478 0.00 0.00 34.60 2.66
2528 4866 4.528206 GGGATGTTTGATTCAGGGACTTTT 59.472 41.667 0.00 0.00 34.60 2.27
2529 4867 5.012046 GGGATGTTTGATTCAGGGACTTTTT 59.988 40.000 0.00 0.00 34.60 1.94
2530 4868 6.210584 GGGATGTTTGATTCAGGGACTTTTTA 59.789 38.462 0.00 0.00 34.60 1.52
2531 4869 7.315890 GGATGTTTGATTCAGGGACTTTTTAG 58.684 38.462 0.00 0.00 34.60 1.85
2532 4870 7.039714 GGATGTTTGATTCAGGGACTTTTTAGT 60.040 37.037 0.00 0.00 34.60 2.24
2533 4871 7.272037 TGTTTGATTCAGGGACTTTTTAGTC 57.728 36.000 0.00 0.00 34.60 2.59
2542 4880 3.957591 GACTTTTTAGTCCCGGAGAGT 57.042 47.619 0.73 4.06 32.97 3.24
2544 4882 4.996344 GACTTTTTAGTCCCGGAGAGTAG 58.004 47.826 0.73 0.00 31.90 2.57
2545 4883 4.670765 ACTTTTTAGTCCCGGAGAGTAGA 58.329 43.478 0.73 0.00 31.90 2.59
2546 4884 5.082425 ACTTTTTAGTCCCGGAGAGTAGAA 58.918 41.667 0.73 4.92 31.90 2.10
2547 4885 5.541484 ACTTTTTAGTCCCGGAGAGTAGAAA 59.459 40.000 0.73 12.10 34.00 2.52
2548 4886 6.042437 ACTTTTTAGTCCCGGAGAGTAGAAAA 59.958 38.462 0.73 12.76 35.30 2.29
2549 4887 6.423776 TTTTAGTCCCGGAGAGTAGAAAAA 57.576 37.500 0.73 3.29 31.90 1.94
2550 4888 5.656213 TTAGTCCCGGAGAGTAGAAAAAG 57.344 43.478 0.73 0.00 31.90 2.27
2551 4889 3.508426 AGTCCCGGAGAGTAGAAAAAGT 58.492 45.455 0.73 0.00 0.00 2.66
2552 4890 3.902467 AGTCCCGGAGAGTAGAAAAAGTT 59.098 43.478 0.73 0.00 0.00 2.66
2553 4891 4.021280 AGTCCCGGAGAGTAGAAAAAGTTC 60.021 45.833 0.73 0.00 0.00 3.01
2554 4892 3.260128 TCCCGGAGAGTAGAAAAAGTTCC 59.740 47.826 0.73 0.00 33.92 3.62
2555 4893 3.261137 CCCGGAGAGTAGAAAAAGTTCCT 59.739 47.826 0.73 0.00 33.92 3.36
2556 4894 4.496360 CCGGAGAGTAGAAAAAGTTCCTC 58.504 47.826 0.00 0.00 33.92 3.71
2557 4895 4.021368 CCGGAGAGTAGAAAAAGTTCCTCA 60.021 45.833 0.00 0.00 33.92 3.86
2558 4896 5.510861 CCGGAGAGTAGAAAAAGTTCCTCAA 60.511 44.000 0.00 0.00 33.92 3.02
2559 4897 5.989777 CGGAGAGTAGAAAAAGTTCCTCAAA 59.010 40.000 0.00 0.00 33.92 2.69
2560 4898 6.482308 CGGAGAGTAGAAAAAGTTCCTCAAAA 59.518 38.462 0.00 0.00 33.92 2.44
2561 4899 7.012044 CGGAGAGTAGAAAAAGTTCCTCAAAAA 59.988 37.037 0.00 0.00 33.92 1.94
2562 4900 8.851145 GGAGAGTAGAAAAAGTTCCTCAAAAAT 58.149 33.333 0.00 0.00 33.92 1.82
2563 4901 9.885934 GAGAGTAGAAAAAGTTCCTCAAAAATC 57.114 33.333 0.00 0.00 33.92 2.17
2564 4902 8.851145 AGAGTAGAAAAAGTTCCTCAAAAATCC 58.149 33.333 0.00 0.00 33.92 3.01
2565 4903 8.768501 AGTAGAAAAAGTTCCTCAAAAATCCT 57.231 30.769 0.00 0.00 33.92 3.24
2566 4904 9.201989 AGTAGAAAAAGTTCCTCAAAAATCCTT 57.798 29.630 0.00 0.00 33.92 3.36
2569 4907 9.421399 AGAAAAAGTTCCTCAAAAATCCTTAGA 57.579 29.630 0.00 0.00 33.92 2.10
2574 4912 8.940397 AGTTCCTCAAAAATCCTTAGAAATCA 57.060 30.769 0.00 0.00 0.00 2.57
2575 4913 9.367160 AGTTCCTCAAAAATCCTTAGAAATCAA 57.633 29.630 0.00 0.00 0.00 2.57
2576 4914 9.981114 GTTCCTCAAAAATCCTTAGAAATCAAA 57.019 29.630 0.00 0.00 0.00 2.69
2577 4915 9.981114 TTCCTCAAAAATCCTTAGAAATCAAAC 57.019 29.630 0.00 0.00 0.00 2.93
2578 4916 8.296713 TCCTCAAAAATCCTTAGAAATCAAACG 58.703 33.333 0.00 0.00 0.00 3.60
2579 4917 7.542130 CCTCAAAAATCCTTAGAAATCAAACGG 59.458 37.037 0.00 0.00 0.00 4.44
2580 4918 7.375053 TCAAAAATCCTTAGAAATCAAACGGG 58.625 34.615 0.00 0.00 0.00 5.28
2581 4919 7.231722 TCAAAAATCCTTAGAAATCAAACGGGA 59.768 33.333 0.00 0.00 0.00 5.14
2582 4920 6.759497 AAATCCTTAGAAATCAAACGGGAG 57.241 37.500 0.00 0.00 0.00 4.30
2583 4921 4.216411 TCCTTAGAAATCAAACGGGAGG 57.784 45.455 0.00 0.00 0.00 4.30
2584 4922 3.841845 TCCTTAGAAATCAAACGGGAGGA 59.158 43.478 0.00 0.00 0.00 3.71
2585 4923 4.287585 TCCTTAGAAATCAAACGGGAGGAA 59.712 41.667 0.00 0.00 0.00 3.36
2586 4924 5.045140 TCCTTAGAAATCAAACGGGAGGAAT 60.045 40.000 0.00 0.00 0.00 3.01
2587 4925 5.652452 CCTTAGAAATCAAACGGGAGGAATT 59.348 40.000 0.00 0.00 0.00 2.17
2588 4926 6.152831 CCTTAGAAATCAAACGGGAGGAATTT 59.847 38.462 0.00 0.00 0.00 1.82
2589 4927 7.309805 CCTTAGAAATCAAACGGGAGGAATTTT 60.310 37.037 0.00 0.00 0.00 1.82
2590 4928 6.419484 AGAAATCAAACGGGAGGAATTTTT 57.581 33.333 0.00 0.00 0.00 1.94
2661 4999 9.810870 TCTAGAACTAGAAAAAGTCTTAGGACT 57.189 33.333 0.82 0.82 44.78 3.85
2675 5013 7.981102 GTCTTAGGACTTCTTAACCAAACAT 57.019 36.000 0.00 0.00 39.24 2.71
2676 5014 8.030744 GTCTTAGGACTTCTTAACCAAACATC 57.969 38.462 0.00 0.00 39.24 3.06
2677 5015 7.119407 GTCTTAGGACTTCTTAACCAAACATCC 59.881 40.741 0.00 0.00 39.24 3.51
2678 5016 5.584551 AGGACTTCTTAACCAAACATCCT 57.415 39.130 0.00 0.00 0.00 3.24
2679 5017 5.561679 AGGACTTCTTAACCAAACATCCTC 58.438 41.667 0.00 0.00 27.47 3.71
2680 5018 5.310857 AGGACTTCTTAACCAAACATCCTCT 59.689 40.000 0.00 0.00 27.47 3.69
2681 5019 5.644206 GGACTTCTTAACCAAACATCCTCTC 59.356 44.000 0.00 0.00 0.00 3.20
2682 5020 6.441088 ACTTCTTAACCAAACATCCTCTCT 57.559 37.500 0.00 0.00 0.00 3.10
2683 5021 7.310485 GGACTTCTTAACCAAACATCCTCTCTA 60.310 40.741 0.00 0.00 0.00 2.43
2684 5022 8.152023 ACTTCTTAACCAAACATCCTCTCTAT 57.848 34.615 0.00 0.00 0.00 1.98
2685 5023 9.268282 ACTTCTTAACCAAACATCCTCTCTATA 57.732 33.333 0.00 0.00 0.00 1.31
2689 5027 9.838339 CTTAACCAAACATCCTCTCTATATTGT 57.162 33.333 0.00 0.00 0.00 2.71
2691 5029 8.511604 AACCAAACATCCTCTCTATATTGTTG 57.488 34.615 0.00 0.00 0.00 3.33
2692 5030 7.056635 ACCAAACATCCTCTCTATATTGTTGG 58.943 38.462 0.00 0.00 0.00 3.77
2693 5031 7.056635 CCAAACATCCTCTCTATATTGTTGGT 58.943 38.462 0.00 0.00 0.00 3.67
2694 5032 8.210946 CCAAACATCCTCTCTATATTGTTGGTA 58.789 37.037 0.00 0.00 0.00 3.25
2695 5033 9.046296 CAAACATCCTCTCTATATTGTTGGTAC 57.954 37.037 0.00 0.00 0.00 3.34
2696 5034 7.914427 ACATCCTCTCTATATTGTTGGTACA 57.086 36.000 0.00 0.00 0.00 2.90
2710 5048 2.734670 TGGTACAAGAAAGTCGTGACG 58.265 47.619 0.00 0.00 32.75 4.35
2711 5049 2.358582 TGGTACAAGAAAGTCGTGACGA 59.641 45.455 2.39 2.39 32.75 4.20
2712 5050 3.181488 TGGTACAAGAAAGTCGTGACGAA 60.181 43.478 10.12 0.00 33.51 3.85
2713 5051 3.181178 GGTACAAGAAAGTCGTGACGAAC 59.819 47.826 10.12 4.26 37.72 3.95
2714 5052 2.883574 ACAAGAAAGTCGTGACGAACA 58.116 42.857 10.12 0.00 37.72 3.18
2715 5053 3.255725 ACAAGAAAGTCGTGACGAACAA 58.744 40.909 10.12 0.00 37.72 2.83
2716 5054 3.680937 ACAAGAAAGTCGTGACGAACAAA 59.319 39.130 10.12 0.00 37.72 2.83
2717 5055 4.331717 ACAAGAAAGTCGTGACGAACAAAT 59.668 37.500 10.12 0.00 37.72 2.32
2718 5056 5.521010 ACAAGAAAGTCGTGACGAACAAATA 59.479 36.000 10.12 0.00 37.72 1.40
2719 5057 5.571778 AGAAAGTCGTGACGAACAAATAC 57.428 39.130 10.12 0.00 37.72 1.89
2720 5058 5.287226 AGAAAGTCGTGACGAACAAATACT 58.713 37.500 10.12 0.00 37.72 2.12
2721 5059 5.401674 AGAAAGTCGTGACGAACAAATACTC 59.598 40.000 10.12 0.00 37.72 2.59
2722 5060 4.500603 AGTCGTGACGAACAAATACTCT 57.499 40.909 10.12 0.00 37.72 3.24
2723 5061 5.618056 AGTCGTGACGAACAAATACTCTA 57.382 39.130 10.12 0.00 37.72 2.43
2724 5062 5.388944 AGTCGTGACGAACAAATACTCTAC 58.611 41.667 10.12 0.00 37.72 2.59
2725 5063 5.180868 AGTCGTGACGAACAAATACTCTACT 59.819 40.000 10.12 0.00 37.72 2.57
2726 5064 5.283247 GTCGTGACGAACAAATACTCTACTG 59.717 44.000 10.12 0.00 37.72 2.74
2727 5065 5.049198 TCGTGACGAACAAATACTCTACTGT 60.049 40.000 4.69 0.00 31.06 3.55
2728 5066 5.628193 CGTGACGAACAAATACTCTACTGTT 59.372 40.000 0.00 0.00 34.78 3.16
2729 5067 6.798476 CGTGACGAACAAATACTCTACTGTTA 59.202 38.462 0.00 0.00 32.31 2.41
2730 5068 7.324375 CGTGACGAACAAATACTCTACTGTTAA 59.676 37.037 0.00 0.00 32.31 2.01
2731 5069 8.423215 GTGACGAACAAATACTCTACTGTTAAC 58.577 37.037 0.00 0.00 32.31 2.01
2732 5070 7.324375 TGACGAACAAATACTCTACTGTTAACG 59.676 37.037 0.26 0.00 32.31 3.18
2733 5071 7.362662 ACGAACAAATACTCTACTGTTAACGA 58.637 34.615 0.26 0.00 32.31 3.85
2734 5072 7.862372 ACGAACAAATACTCTACTGTTAACGAA 59.138 33.333 0.26 0.00 32.31 3.85
2735 5073 8.363755 CGAACAAATACTCTACTGTTAACGAAG 58.636 37.037 0.26 0.00 32.31 3.79
2736 5074 9.189723 GAACAAATACTCTACTGTTAACGAAGT 57.810 33.333 0.26 2.55 35.26 3.01
2747 5085 3.645975 ACGAAGTTTGGGCGCGTG 61.646 61.111 8.43 0.00 37.78 5.34
2748 5086 3.645975 CGAAGTTTGGGCGCGTGT 61.646 61.111 8.43 0.00 0.00 4.49
2749 5087 2.051345 GAAGTTTGGGCGCGTGTG 60.051 61.111 8.43 0.00 0.00 3.82
2750 5088 4.264638 AAGTTTGGGCGCGTGTGC 62.265 61.111 8.43 0.00 37.91 4.57
2752 5090 4.980903 GTTTGGGCGCGTGTGCTG 62.981 66.667 8.43 0.00 39.65 4.41
2757 5095 3.726517 GGCGCGTGTGCTGTCATT 61.727 61.111 8.43 0.00 39.65 2.57
2758 5096 2.202222 GCGCGTGTGCTGTCATTC 60.202 61.111 8.43 0.00 39.65 2.67
2759 5097 2.953605 GCGCGTGTGCTGTCATTCA 61.954 57.895 8.43 0.00 39.65 2.57
2760 5098 1.131218 CGCGTGTGCTGTCATTCAG 59.869 57.895 0.00 0.00 46.12 3.02
2761 5099 1.560004 CGCGTGTGCTGTCATTCAGT 61.560 55.000 0.00 0.00 45.23 3.41
2762 5100 1.428448 GCGTGTGCTGTCATTCAGTA 58.572 50.000 0.00 0.00 45.23 2.74
2763 5101 1.391485 GCGTGTGCTGTCATTCAGTAG 59.609 52.381 0.00 0.00 45.23 2.57
2764 5102 2.926586 GCGTGTGCTGTCATTCAGTAGA 60.927 50.000 0.00 0.00 45.23 2.59
2765 5103 2.919859 CGTGTGCTGTCATTCAGTAGAG 59.080 50.000 0.00 0.00 45.23 2.43
2766 5104 3.612717 CGTGTGCTGTCATTCAGTAGAGT 60.613 47.826 0.00 0.00 45.23 3.24
2767 5105 4.310769 GTGTGCTGTCATTCAGTAGAGTT 58.689 43.478 0.00 0.00 45.23 3.01
2768 5106 4.752101 GTGTGCTGTCATTCAGTAGAGTTT 59.248 41.667 0.00 0.00 45.23 2.66
2769 5107 5.237344 GTGTGCTGTCATTCAGTAGAGTTTT 59.763 40.000 0.00 0.00 45.23 2.43
2770 5108 5.822519 TGTGCTGTCATTCAGTAGAGTTTTT 59.177 36.000 0.00 0.00 45.23 1.94
2795 5133 3.824414 CGTAACGGAGGCAAAAGATTT 57.176 42.857 0.00 0.00 0.00 2.17
2796 5134 3.488489 CGTAACGGAGGCAAAAGATTTG 58.512 45.455 0.00 0.00 0.00 2.32
2797 5135 2.438868 AACGGAGGCAAAAGATTTGC 57.561 45.000 17.18 17.18 44.22 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.180406 TAGGATTCTTTGCCTCCCGC 59.820 55.000 0.00 0.00 35.73 6.13
1 2 1.762957 TCTAGGATTCTTTGCCTCCCG 59.237 52.381 0.00 0.00 35.73 5.14
2 3 4.445557 AATCTAGGATTCTTTGCCTCCC 57.554 45.455 0.00 0.00 35.73 4.30
3 4 6.406288 CCAAAAATCTAGGATTCTTTGCCTCC 60.406 42.308 14.66 0.00 35.73 4.30
4 5 6.378280 TCCAAAAATCTAGGATTCTTTGCCTC 59.622 38.462 14.66 0.00 35.73 4.70
5 6 6.256053 TCCAAAAATCTAGGATTCTTTGCCT 58.744 36.000 14.66 0.00 38.31 4.75
6 7 6.406288 CCTCCAAAAATCTAGGATTCTTTGCC 60.406 42.308 14.66 0.00 0.00 4.52
7 8 6.567959 CCTCCAAAAATCTAGGATTCTTTGC 58.432 40.000 14.66 0.00 0.00 3.68
8 9 6.567959 GCCTCCAAAAATCTAGGATTCTTTG 58.432 40.000 0.00 13.92 0.00 2.77
9 10 5.358160 CGCCTCCAAAAATCTAGGATTCTTT 59.642 40.000 0.00 0.00 0.00 2.52
10 11 4.884164 CGCCTCCAAAAATCTAGGATTCTT 59.116 41.667 0.00 0.00 0.00 2.52
11 12 4.455606 CGCCTCCAAAAATCTAGGATTCT 58.544 43.478 0.00 0.00 0.00 2.40
12 13 3.565902 CCGCCTCCAAAAATCTAGGATTC 59.434 47.826 0.00 0.00 0.00 2.52
13 14 3.555966 CCGCCTCCAAAAATCTAGGATT 58.444 45.455 0.00 0.00 0.00 3.01
14 15 2.749800 GCCGCCTCCAAAAATCTAGGAT 60.750 50.000 0.00 0.00 0.00 3.24
15 16 1.408266 GCCGCCTCCAAAAATCTAGGA 60.408 52.381 0.00 0.00 0.00 2.94
16 17 1.025041 GCCGCCTCCAAAAATCTAGG 58.975 55.000 0.00 0.00 0.00 3.02
17 18 0.657840 CGCCGCCTCCAAAAATCTAG 59.342 55.000 0.00 0.00 0.00 2.43
18 19 0.746563 CCGCCGCCTCCAAAAATCTA 60.747 55.000 0.00 0.00 0.00 1.98
19 20 2.046285 CCGCCGCCTCCAAAAATCT 61.046 57.895 0.00 0.00 0.00 2.40
20 21 2.489751 CCGCCGCCTCCAAAAATC 59.510 61.111 0.00 0.00 0.00 2.17
21 22 3.758931 GCCGCCGCCTCCAAAAAT 61.759 61.111 0.00 0.00 0.00 1.82
22 23 4.966787 AGCCGCCGCCTCCAAAAA 62.967 61.111 0.00 0.00 34.57 1.94
34 35 0.106894 ACTAATTAGAGGCCAGCCGC 59.893 55.000 19.38 3.98 41.95 6.53
35 36 2.610727 GCTACTAATTAGAGGCCAGCCG 60.611 54.545 19.38 0.00 41.95 5.52
36 37 2.289756 GGCTACTAATTAGAGGCCAGCC 60.290 54.545 29.81 25.02 40.84 4.85
37 38 3.046968 GGCTACTAATTAGAGGCCAGC 57.953 52.381 29.81 22.09 40.84 4.85
45 46 9.708092 GTCCTTATACTTTGGGCTACTAATTAG 57.292 37.037 11.05 11.05 0.00 1.73
48 49 7.932683 AGTCCTTATACTTTGGGCTACTAAT 57.067 36.000 0.00 0.00 33.57 1.73
55 56 4.844884 AGTGAAGTCCTTATACTTTGGGC 58.155 43.478 0.00 0.00 39.78 5.36
64 65 8.367660 TGAGAGATTTGTAGTGAAGTCCTTAT 57.632 34.615 0.00 0.00 0.00 1.73
91 92 7.306051 CGACACGTAATTTGCCATGTTTAAAAA 60.306 33.333 0.00 0.00 0.00 1.94
99 100 2.158645 TCACGACACGTAATTTGCCATG 59.841 45.455 0.00 0.00 38.32 3.66
100 101 2.415168 CTCACGACACGTAATTTGCCAT 59.585 45.455 0.00 0.00 38.32 4.40
101 102 1.795872 CTCACGACACGTAATTTGCCA 59.204 47.619 0.00 0.00 38.32 4.92
102 103 1.463528 GCTCACGACACGTAATTTGCC 60.464 52.381 0.00 0.00 38.32 4.52
104 105 1.127951 GGGCTCACGACACGTAATTTG 59.872 52.381 0.00 0.00 38.32 2.32
105 106 1.435577 GGGCTCACGACACGTAATTT 58.564 50.000 0.00 0.00 38.32 1.82
107 108 1.153901 CGGGCTCACGACACGTAAT 60.154 57.895 0.00 0.00 38.32 1.89
108 109 2.256158 CGGGCTCACGACACGTAA 59.744 61.111 0.00 0.00 38.32 3.18
116 117 1.241315 AACAAATTCCCGGGCTCACG 61.241 55.000 18.49 6.55 0.00 4.35
132 133 1.028130 TTGACATGCTTGCCGAAACA 58.972 45.000 0.00 0.00 0.00 2.83
133 134 2.132740 TTTGACATGCTTGCCGAAAC 57.867 45.000 0.00 0.00 0.00 2.78
134 135 2.352617 GGATTTGACATGCTTGCCGAAA 60.353 45.455 0.00 0.00 0.00 3.46
201 235 2.289002 CCTATCTTGAGCACGGCAATTC 59.711 50.000 0.00 0.00 0.00 2.17
209 243 4.332819 ACGCAAATTACCTATCTTGAGCAC 59.667 41.667 0.00 0.00 0.00 4.40
252 286 3.472652 ACTGACATCGGTTTTGTAAGCA 58.527 40.909 0.00 0.00 29.80 3.91
291 325 8.994429 ACTGCATCTTGTATATTGACTATAGC 57.006 34.615 0.00 0.00 0.00 2.97
335 369 6.801377 TGCTCTATTCGTTTTTGTATTTGCTG 59.199 34.615 0.00 0.00 0.00 4.41
364 398 2.735444 GCCCTTCTTTTTAGCGGAATGC 60.735 50.000 0.00 0.00 46.98 3.56
369 403 1.136774 GCGCCCTTCTTTTTAGCGG 59.863 57.895 0.00 0.00 46.50 5.52
387 421 3.321497 GGATCGAGCTAGTTTATGCAGG 58.679 50.000 0.00 0.00 0.00 4.85
423 457 2.726760 GTGAAATACTAGCAGCGGATCG 59.273 50.000 0.00 0.00 0.00 3.69
449 483 2.764314 GCCGGCCATGCAACAGTAG 61.764 63.158 18.11 0.00 0.00 2.57
458 492 3.993614 TAACAGCTGGCCGGCCATG 62.994 63.158 46.65 40.96 46.15 3.66
459 493 2.965716 GATAACAGCTGGCCGGCCAT 62.966 60.000 46.65 33.58 46.15 4.40
460 494 3.697439 GATAACAGCTGGCCGGCCA 62.697 63.158 44.03 44.03 45.02 5.36
461 495 2.893682 AAGATAACAGCTGGCCGGCC 62.894 60.000 39.40 39.40 0.00 6.13
462 496 1.452108 AAGATAACAGCTGGCCGGC 60.452 57.895 30.15 30.15 0.00 6.13
463 497 1.097547 CCAAGATAACAGCTGGCCGG 61.098 60.000 19.93 7.41 0.00 6.13
464 498 0.107703 TCCAAGATAACAGCTGGCCG 60.108 55.000 19.93 0.00 0.00 6.13
500 534 2.882761 CGATGAGAAATGACCCATGCAT 59.117 45.455 0.00 0.00 0.00 3.96
501 535 2.291365 CGATGAGAAATGACCCATGCA 58.709 47.619 0.00 0.00 0.00 3.96
579 633 2.082231 AGAGGAAACGAAGATCGACGA 58.918 47.619 18.13 0.00 43.74 4.20
601 2484 6.312529 TGTCCCCGTCTCAGATTACTATTAT 58.687 40.000 0.00 0.00 0.00 1.28
602 2485 5.698104 TGTCCCCGTCTCAGATTACTATTA 58.302 41.667 0.00 0.00 0.00 0.98
603 2486 4.543689 TGTCCCCGTCTCAGATTACTATT 58.456 43.478 0.00 0.00 0.00 1.73
604 2487 4.180377 TGTCCCCGTCTCAGATTACTAT 57.820 45.455 0.00 0.00 0.00 2.12
605 2488 3.657398 TGTCCCCGTCTCAGATTACTA 57.343 47.619 0.00 0.00 0.00 1.82
606 2489 2.526888 TGTCCCCGTCTCAGATTACT 57.473 50.000 0.00 0.00 0.00 2.24
668 2551 4.883354 CCTTGGATCTGCCGGGCC 62.883 72.222 17.97 0.00 40.66 5.80
676 2585 2.045926 GTGCCGTGCCTTGGATCT 60.046 61.111 0.00 0.00 0.00 2.75
702 2611 3.587933 GGTTTCACGGTGGCGCAA 61.588 61.111 10.83 0.00 0.00 4.85
794 2732 0.470456 AAGGTGGGAGGACACGTGTA 60.470 55.000 23.44 0.91 42.23 2.90
808 2746 0.946221 GAGAGTGGCACGTGAAGGTG 60.946 60.000 22.23 0.00 40.89 4.00
822 2760 2.179517 CGCGCGAAGGAAGAGAGT 59.820 61.111 28.94 0.00 0.00 3.24
849 2787 0.317160 AGATTGACGGCGTCACTCAA 59.683 50.000 41.69 30.24 42.60 3.02
909 2849 0.323908 AGACTCAAGACGGGGAGAGG 60.324 60.000 0.00 0.00 35.17 3.69
913 2853 2.444421 GTAGAAGACTCAAGACGGGGA 58.556 52.381 0.00 0.00 0.00 4.81
917 2857 1.790838 CGCGGTAGAAGACTCAAGACG 60.791 57.143 0.00 0.00 0.00 4.18
918 2858 1.467734 TCGCGGTAGAAGACTCAAGAC 59.532 52.381 6.13 0.00 0.00 3.01
919 2859 1.467734 GTCGCGGTAGAAGACTCAAGA 59.532 52.381 6.13 0.00 32.58 3.02
920 2860 1.467713 GGTCGCGGTAGAAGACTCAAG 60.468 57.143 6.13 0.00 35.42 3.02
921 2861 0.524862 GGTCGCGGTAGAAGACTCAA 59.475 55.000 6.13 0.00 35.42 3.02
922 2862 0.322277 AGGTCGCGGTAGAAGACTCA 60.322 55.000 6.13 0.00 35.42 3.41
923 2863 0.377905 GAGGTCGCGGTAGAAGACTC 59.622 60.000 6.13 0.00 35.42 3.36
924 2864 1.367599 CGAGGTCGCGGTAGAAGACT 61.368 60.000 6.13 0.00 35.42 3.24
925 2865 1.062206 CGAGGTCGCGGTAGAAGAC 59.938 63.158 6.13 0.00 0.00 3.01
997 2937 2.825836 CGAGGTGGCTTCCATGGC 60.826 66.667 6.96 0.00 35.28 4.40
1218 3498 2.506217 TCCTCATCGTTGCGCGTC 60.506 61.111 8.43 0.00 42.13 5.19
1221 3501 4.210304 GCGTCCTCATCGTTGCGC 62.210 66.667 0.00 0.00 38.15 6.09
1223 3503 4.210304 GCGCGTCCTCATCGTTGC 62.210 66.667 8.43 0.00 0.00 4.17
1227 3507 4.630785 ATCGGCGCGTCCTCATCG 62.631 66.667 4.51 0.00 0.00 3.84
1231 3511 4.933064 CTCCATCGGCGCGTCCTC 62.933 72.222 4.51 0.00 0.00 3.71
1497 3780 1.315981 CGTAGAGGCTGAGCAGGTCA 61.316 60.000 6.82 1.52 0.00 4.02
1639 3922 3.469008 TCGACCACACAGTCAAGAAAT 57.531 42.857 0.00 0.00 36.52 2.17
1642 3925 1.068541 CGATCGACCACACAGTCAAGA 60.069 52.381 10.26 0.00 36.52 3.02
1674 3984 6.585695 AGCTGCAAGTAAACACTACTAGTA 57.414 37.500 1.02 1.89 35.30 1.82
1681 3991 3.189287 GCACATAGCTGCAAGTAAACACT 59.811 43.478 1.02 0.00 41.15 3.55
1682 3992 3.492313 GCACATAGCTGCAAGTAAACAC 58.508 45.455 1.02 0.00 41.15 3.32
1896 4206 2.125106 GGATGTCACCGACCAGCC 60.125 66.667 0.00 0.00 0.00 4.85
1927 4237 0.554305 TGGAATGATCAGCCTGCCAT 59.446 50.000 15.95 0.00 0.00 4.40
1942 4259 3.157881 CAGCGTCTATCTATCCCTGGAA 58.842 50.000 0.00 0.00 0.00 3.53
2146 4475 1.161843 TAAGCTTTTTCGGGCGAAGG 58.838 50.000 3.20 0.00 35.38 3.46
2147 4476 2.223272 GGATAAGCTTTTTCGGGCGAAG 60.223 50.000 3.20 0.00 35.38 3.79
2148 4477 1.741145 GGATAAGCTTTTTCGGGCGAA 59.259 47.619 3.20 0.00 0.00 4.70
2150 4479 0.380733 GGGATAAGCTTTTTCGGGCG 59.619 55.000 3.20 0.00 0.00 6.13
2151 4480 1.470051 TGGGATAAGCTTTTTCGGGC 58.530 50.000 3.20 0.00 0.00 6.13
2152 4481 3.089284 ACTTGGGATAAGCTTTTTCGGG 58.911 45.455 3.20 0.00 0.00 5.14
2153 4482 4.783764 AACTTGGGATAAGCTTTTTCGG 57.216 40.909 3.20 0.00 0.00 4.30
2155 4484 5.926542 GGACAAACTTGGGATAAGCTTTTTC 59.073 40.000 3.20 2.10 0.00 2.29
2156 4485 5.602561 AGGACAAACTTGGGATAAGCTTTTT 59.397 36.000 3.20 0.00 0.00 1.94
2157 4486 5.147767 AGGACAAACTTGGGATAAGCTTTT 58.852 37.500 3.20 0.00 0.00 2.27
2158 4487 4.740902 AGGACAAACTTGGGATAAGCTTT 58.259 39.130 3.20 0.00 0.00 3.51
2159 4488 4.202567 TGAGGACAAACTTGGGATAAGCTT 60.203 41.667 3.48 3.48 0.00 3.74
2160 4489 3.330701 TGAGGACAAACTTGGGATAAGCT 59.669 43.478 0.00 0.00 0.00 3.74
2161 4490 3.686016 TGAGGACAAACTTGGGATAAGC 58.314 45.455 0.00 0.00 0.00 3.09
2162 4491 6.434028 TCATTTGAGGACAAACTTGGGATAAG 59.566 38.462 0.00 0.00 46.56 1.73
2163 4492 6.310941 TCATTTGAGGACAAACTTGGGATAA 58.689 36.000 0.00 0.00 46.56 1.75
2164 4493 5.886609 TCATTTGAGGACAAACTTGGGATA 58.113 37.500 0.00 0.00 46.56 2.59
2165 4494 4.739793 TCATTTGAGGACAAACTTGGGAT 58.260 39.130 0.00 0.00 46.56 3.85
2166 4495 4.177537 TCATTTGAGGACAAACTTGGGA 57.822 40.909 0.00 0.00 46.56 4.37
2167 4496 4.935352 TTCATTTGAGGACAAACTTGGG 57.065 40.909 0.00 0.00 46.56 4.12
2168 4497 5.846203 ACATTCATTTGAGGACAAACTTGG 58.154 37.500 0.00 0.00 46.56 3.61
2169 4498 8.517878 AGATACATTCATTTGAGGACAAACTTG 58.482 33.333 0.00 0.00 46.56 3.16
2170 4499 8.641498 AGATACATTCATTTGAGGACAAACTT 57.359 30.769 0.00 0.00 46.56 2.66
2171 4500 9.388506 CTAGATACATTCATTTGAGGACAAACT 57.611 33.333 0.00 0.00 46.56 2.66
2172 4501 8.125448 GCTAGATACATTCATTTGAGGACAAAC 58.875 37.037 0.00 0.00 46.56 2.93
2174 4503 7.280876 GTGCTAGATACATTCATTTGAGGACAA 59.719 37.037 0.00 0.00 0.00 3.18
2175 4504 6.763135 GTGCTAGATACATTCATTTGAGGACA 59.237 38.462 0.00 0.00 0.00 4.02
2176 4505 6.203723 GGTGCTAGATACATTCATTTGAGGAC 59.796 42.308 0.00 0.00 0.00 3.85
2177 4506 6.100279 AGGTGCTAGATACATTCATTTGAGGA 59.900 38.462 0.00 0.00 0.00 3.71
2178 4507 6.294473 AGGTGCTAGATACATTCATTTGAGG 58.706 40.000 0.00 0.00 0.00 3.86
2183 4512 9.442047 GCTTTATAGGTGCTAGATACATTCATT 57.558 33.333 0.00 0.00 0.00 2.57
2184 4513 7.761704 CGCTTTATAGGTGCTAGATACATTCAT 59.238 37.037 0.00 0.00 0.00 2.57
2185 4514 7.039993 TCGCTTTATAGGTGCTAGATACATTCA 60.040 37.037 0.00 0.00 0.00 2.57
2186 4515 7.313646 TCGCTTTATAGGTGCTAGATACATTC 58.686 38.462 0.00 0.00 0.00 2.67
2187 4516 7.228314 TCGCTTTATAGGTGCTAGATACATT 57.772 36.000 0.00 0.00 0.00 2.71
2188 4517 6.626181 GCTCGCTTTATAGGTGCTAGATACAT 60.626 42.308 0.00 0.00 0.00 2.29
2189 4518 5.335740 GCTCGCTTTATAGGTGCTAGATACA 60.336 44.000 0.00 0.00 0.00 2.29
2190 4519 5.096849 GCTCGCTTTATAGGTGCTAGATAC 58.903 45.833 0.00 0.00 0.00 2.24
2191 4520 5.010933 AGCTCGCTTTATAGGTGCTAGATA 58.989 41.667 0.00 0.00 0.00 1.98
2192 4521 3.829601 AGCTCGCTTTATAGGTGCTAGAT 59.170 43.478 0.00 0.00 0.00 1.98
2193 4522 3.223435 AGCTCGCTTTATAGGTGCTAGA 58.777 45.455 0.00 0.00 0.00 2.43
2194 4523 3.651803 AGCTCGCTTTATAGGTGCTAG 57.348 47.619 0.00 0.00 0.00 3.42
2195 4524 3.132289 ACAAGCTCGCTTTATAGGTGCTA 59.868 43.478 0.58 0.00 33.42 3.49
2198 4527 5.986135 AGATAACAAGCTCGCTTTATAGGTG 59.014 40.000 0.58 0.00 33.42 4.00
2206 4535 2.005451 CAGCAGATAACAAGCTCGCTT 58.995 47.619 0.00 0.00 36.26 4.68
2217 4546 2.237143 AGCCAAGCAGTACAGCAGATAA 59.763 45.455 13.16 0.00 36.85 1.75
2222 4551 0.325933 ATCAGCCAAGCAGTACAGCA 59.674 50.000 13.16 0.00 36.85 4.41
2234 4563 2.437895 GCTCAGCAGCATCAGCCA 60.438 61.111 0.00 0.00 46.06 4.75
2259 4588 6.974622 GCAGGTAATTACACATCAAGGAAATG 59.025 38.462 17.16 0.02 0.00 2.32
2281 4613 1.968050 AAGGTTATCCCGACCGGCAG 61.968 60.000 0.00 0.00 42.11 4.85
2308 4640 5.643379 TTATTGGATGAAAACAGCCTGAC 57.357 39.130 0.00 0.00 0.00 3.51
2449 4787 7.596494 TCTATTTCTTCTTCACAAATTGCAGG 58.404 34.615 0.00 0.00 0.00 4.85
2460 4798 4.867047 CAGCTCGCTTCTATTTCTTCTTCA 59.133 41.667 0.00 0.00 0.00 3.02
2461 4799 4.867608 ACAGCTCGCTTCTATTTCTTCTTC 59.132 41.667 0.00 0.00 0.00 2.87
2500 4838 3.285484 CCTGAATCAAACATCCCCAGAG 58.715 50.000 0.00 0.00 0.00 3.35
2501 4839 2.025037 CCCTGAATCAAACATCCCCAGA 60.025 50.000 0.00 0.00 0.00 3.86
2506 4844 5.728637 AAAAGTCCCTGAATCAAACATCC 57.271 39.130 0.00 0.00 0.00 3.51
2507 4845 7.886338 ACTAAAAAGTCCCTGAATCAAACATC 58.114 34.615 0.00 0.00 0.00 3.06
2508 4846 7.839680 ACTAAAAAGTCCCTGAATCAAACAT 57.160 32.000 0.00 0.00 0.00 2.71
2509 4847 7.272037 GACTAAAAAGTCCCTGAATCAAACA 57.728 36.000 0.00 0.00 32.97 2.83
2522 4860 3.957591 ACTCTCCGGGACTAAAAAGTC 57.042 47.619 0.00 0.00 38.04 3.01
2523 4861 4.670765 TCTACTCTCCGGGACTAAAAAGT 58.329 43.478 0.00 0.00 0.00 2.66
2524 4862 5.656213 TTCTACTCTCCGGGACTAAAAAG 57.344 43.478 0.00 0.00 0.00 2.27
2525 4863 6.423776 TTTTCTACTCTCCGGGACTAAAAA 57.576 37.500 0.00 0.00 0.00 1.94
2526 4864 6.042437 ACTTTTTCTACTCTCCGGGACTAAAA 59.958 38.462 0.00 0.00 0.00 1.52
2527 4865 5.541484 ACTTTTTCTACTCTCCGGGACTAAA 59.459 40.000 0.00 0.00 0.00 1.85
2528 4866 5.082425 ACTTTTTCTACTCTCCGGGACTAA 58.918 41.667 0.00 0.00 0.00 2.24
2529 4867 4.670765 ACTTTTTCTACTCTCCGGGACTA 58.329 43.478 0.00 0.00 0.00 2.59
2530 4868 3.508426 ACTTTTTCTACTCTCCGGGACT 58.492 45.455 0.00 0.00 0.00 3.85
2531 4869 3.957591 ACTTTTTCTACTCTCCGGGAC 57.042 47.619 0.00 0.00 0.00 4.46
2532 4870 3.260128 GGAACTTTTTCTACTCTCCGGGA 59.740 47.826 0.00 0.00 31.71 5.14
2533 4871 3.261137 AGGAACTTTTTCTACTCTCCGGG 59.739 47.826 0.00 0.00 27.25 5.73
2534 4872 4.021368 TGAGGAACTTTTTCTACTCTCCGG 60.021 45.833 0.00 0.00 41.55 5.14
2535 4873 5.135508 TGAGGAACTTTTTCTACTCTCCG 57.864 43.478 0.00 0.00 41.55 4.63
2536 4874 7.803279 TTTTGAGGAACTTTTTCTACTCTCC 57.197 36.000 0.00 0.00 41.55 3.71
2537 4875 9.885934 GATTTTTGAGGAACTTTTTCTACTCTC 57.114 33.333 0.00 0.00 41.55 3.20
2538 4876 8.851145 GGATTTTTGAGGAACTTTTTCTACTCT 58.149 33.333 0.00 0.00 41.55 3.24
2539 4877 8.851145 AGGATTTTTGAGGAACTTTTTCTACTC 58.149 33.333 0.00 0.00 41.55 2.59
2540 4878 8.768501 AGGATTTTTGAGGAACTTTTTCTACT 57.231 30.769 0.00 0.00 41.55 2.57
2543 4881 9.421399 TCTAAGGATTTTTGAGGAACTTTTTCT 57.579 29.630 0.00 0.00 41.55 2.52
2548 4886 9.367160 TGATTTCTAAGGATTTTTGAGGAACTT 57.633 29.630 0.00 0.00 41.55 2.66
2550 4888 9.981114 TTTGATTTCTAAGGATTTTTGAGGAAC 57.019 29.630 0.00 0.00 0.00 3.62
2551 4889 9.981114 GTTTGATTTCTAAGGATTTTTGAGGAA 57.019 29.630 0.00 0.00 0.00 3.36
2552 4890 8.296713 CGTTTGATTTCTAAGGATTTTTGAGGA 58.703 33.333 0.00 0.00 0.00 3.71
2553 4891 7.542130 CCGTTTGATTTCTAAGGATTTTTGAGG 59.458 37.037 0.00 0.00 0.00 3.86
2554 4892 7.542130 CCCGTTTGATTTCTAAGGATTTTTGAG 59.458 37.037 0.00 0.00 0.00 3.02
2555 4893 7.231722 TCCCGTTTGATTTCTAAGGATTTTTGA 59.768 33.333 0.00 0.00 0.00 2.69
2556 4894 7.375053 TCCCGTTTGATTTCTAAGGATTTTTG 58.625 34.615 0.00 0.00 0.00 2.44
2557 4895 7.309805 CCTCCCGTTTGATTTCTAAGGATTTTT 60.310 37.037 0.00 0.00 0.00 1.94
2558 4896 6.152831 CCTCCCGTTTGATTTCTAAGGATTTT 59.847 38.462 0.00 0.00 0.00 1.82
2559 4897 5.652452 CCTCCCGTTTGATTTCTAAGGATTT 59.348 40.000 0.00 0.00 0.00 2.17
2560 4898 5.045140 TCCTCCCGTTTGATTTCTAAGGATT 60.045 40.000 0.00 0.00 0.00 3.01
2561 4899 4.473559 TCCTCCCGTTTGATTTCTAAGGAT 59.526 41.667 0.00 0.00 0.00 3.24
2562 4900 3.841845 TCCTCCCGTTTGATTTCTAAGGA 59.158 43.478 0.00 0.00 0.00 3.36
2563 4901 4.216411 TCCTCCCGTTTGATTTCTAAGG 57.784 45.455 0.00 0.00 0.00 2.69
2564 4902 6.759497 AATTCCTCCCGTTTGATTTCTAAG 57.241 37.500 0.00 0.00 0.00 2.18
2565 4903 7.533289 AAAATTCCTCCCGTTTGATTTCTAA 57.467 32.000 0.00 0.00 0.00 2.10
2566 4904 7.533289 AAAAATTCCTCCCGTTTGATTTCTA 57.467 32.000 0.00 0.00 0.00 2.10
2567 4905 6.419484 AAAAATTCCTCCCGTTTGATTTCT 57.581 33.333 0.00 0.00 0.00 2.52
2651 4989 7.119407 GGATGTTTGGTTAAGAAGTCCTAAGAC 59.881 40.741 0.00 0.00 43.89 3.01
2652 4990 7.017254 AGGATGTTTGGTTAAGAAGTCCTAAGA 59.983 37.037 0.00 0.00 32.13 2.10
2653 4991 7.168905 AGGATGTTTGGTTAAGAAGTCCTAAG 58.831 38.462 0.00 0.00 32.13 2.18
2654 4992 7.017254 AGAGGATGTTTGGTTAAGAAGTCCTAA 59.983 37.037 0.00 0.00 33.94 2.69
2655 4993 6.500751 AGAGGATGTTTGGTTAAGAAGTCCTA 59.499 38.462 0.00 0.00 33.94 2.94
2656 4994 5.310857 AGAGGATGTTTGGTTAAGAAGTCCT 59.689 40.000 0.00 0.00 36.34 3.85
2657 4995 5.561679 AGAGGATGTTTGGTTAAGAAGTCC 58.438 41.667 0.00 0.00 0.00 3.85
2658 4996 6.468543 AGAGAGGATGTTTGGTTAAGAAGTC 58.531 40.000 0.00 0.00 0.00 3.01
2659 4997 6.441088 AGAGAGGATGTTTGGTTAAGAAGT 57.559 37.500 0.00 0.00 0.00 3.01
2663 5001 9.838339 ACAATATAGAGAGGATGTTTGGTTAAG 57.162 33.333 0.00 0.00 0.00 1.85
2665 5003 9.613428 CAACAATATAGAGAGGATGTTTGGTTA 57.387 33.333 0.00 0.00 0.00 2.85
2666 5004 7.557719 CCAACAATATAGAGAGGATGTTTGGTT 59.442 37.037 0.00 0.00 0.00 3.67
2667 5005 7.056635 CCAACAATATAGAGAGGATGTTTGGT 58.943 38.462 0.00 0.00 0.00 3.67
2668 5006 7.056635 ACCAACAATATAGAGAGGATGTTTGG 58.943 38.462 0.00 0.00 0.00 3.28
2669 5007 9.046296 GTACCAACAATATAGAGAGGATGTTTG 57.954 37.037 0.00 0.00 0.00 2.93
2670 5008 8.768397 TGTACCAACAATATAGAGAGGATGTTT 58.232 33.333 0.00 0.00 30.91 2.83
2671 5009 8.319057 TGTACCAACAATATAGAGAGGATGTT 57.681 34.615 0.00 0.00 30.91 2.71
2672 5010 7.914427 TGTACCAACAATATAGAGAGGATGT 57.086 36.000 0.00 0.00 30.91 3.06
2673 5011 8.642432 TCTTGTACCAACAATATAGAGAGGATG 58.358 37.037 0.00 0.00 44.43 3.51
2674 5012 8.783660 TCTTGTACCAACAATATAGAGAGGAT 57.216 34.615 0.00 0.00 44.43 3.24
2675 5013 8.603898 TTCTTGTACCAACAATATAGAGAGGA 57.396 34.615 0.00 0.00 44.43 3.71
2676 5014 9.319143 CTTTCTTGTACCAACAATATAGAGAGG 57.681 37.037 0.00 0.00 44.43 3.69
2677 5015 9.877178 ACTTTCTTGTACCAACAATATAGAGAG 57.123 33.333 0.00 0.00 44.43 3.20
2678 5016 9.871238 GACTTTCTTGTACCAACAATATAGAGA 57.129 33.333 0.00 0.00 44.43 3.10
2679 5017 8.808529 CGACTTTCTTGTACCAACAATATAGAG 58.191 37.037 0.00 0.00 44.43 2.43
2680 5018 8.308931 ACGACTTTCTTGTACCAACAATATAGA 58.691 33.333 0.00 0.00 44.43 1.98
2681 5019 8.380644 CACGACTTTCTTGTACCAACAATATAG 58.619 37.037 0.00 0.00 44.43 1.31
2682 5020 8.089597 TCACGACTTTCTTGTACCAACAATATA 58.910 33.333 0.00 0.00 44.43 0.86
2683 5021 6.932400 TCACGACTTTCTTGTACCAACAATAT 59.068 34.615 0.00 0.00 44.43 1.28
2684 5022 6.201425 GTCACGACTTTCTTGTACCAACAATA 59.799 38.462 0.00 0.00 44.43 1.90
2685 5023 5.007332 GTCACGACTTTCTTGTACCAACAAT 59.993 40.000 0.00 0.00 44.43 2.71
2686 5024 4.330620 GTCACGACTTTCTTGTACCAACAA 59.669 41.667 0.00 0.00 43.32 2.83
2687 5025 3.866910 GTCACGACTTTCTTGTACCAACA 59.133 43.478 0.00 0.00 0.00 3.33
2688 5026 3.060740 CGTCACGACTTTCTTGTACCAAC 60.061 47.826 0.00 0.00 0.00 3.77
2689 5027 3.117794 CGTCACGACTTTCTTGTACCAA 58.882 45.455 0.00 0.00 0.00 3.67
2690 5028 2.358582 TCGTCACGACTTTCTTGTACCA 59.641 45.455 0.00 0.00 0.00 3.25
2691 5029 3.004024 TCGTCACGACTTTCTTGTACC 57.996 47.619 0.00 0.00 0.00 3.34
2692 5030 3.792956 TGTTCGTCACGACTTTCTTGTAC 59.207 43.478 0.00 0.00 34.89 2.90
2693 5031 4.031418 TGTTCGTCACGACTTTCTTGTA 57.969 40.909 0.00 0.00 34.89 2.41
2694 5032 2.883574 TGTTCGTCACGACTTTCTTGT 58.116 42.857 0.00 0.00 34.89 3.16
2695 5033 3.918258 TTGTTCGTCACGACTTTCTTG 57.082 42.857 0.00 0.00 34.89 3.02
2696 5034 5.751990 AGTATTTGTTCGTCACGACTTTCTT 59.248 36.000 0.00 0.00 34.89 2.52
2697 5035 5.287226 AGTATTTGTTCGTCACGACTTTCT 58.713 37.500 0.00 0.00 34.89 2.52
2698 5036 5.401674 AGAGTATTTGTTCGTCACGACTTTC 59.598 40.000 0.00 0.00 34.89 2.62
2699 5037 5.287226 AGAGTATTTGTTCGTCACGACTTT 58.713 37.500 0.00 0.00 34.89 2.66
2700 5038 4.868067 AGAGTATTTGTTCGTCACGACTT 58.132 39.130 0.00 0.00 34.89 3.01
2701 5039 4.500603 AGAGTATTTGTTCGTCACGACT 57.499 40.909 0.00 0.00 34.89 4.18
2702 5040 5.283247 CAGTAGAGTATTTGTTCGTCACGAC 59.717 44.000 0.00 0.00 34.89 4.34
2703 5041 5.049198 ACAGTAGAGTATTTGTTCGTCACGA 60.049 40.000 0.00 0.00 0.00 4.35
2704 5042 5.152097 ACAGTAGAGTATTTGTTCGTCACG 58.848 41.667 0.00 0.00 0.00 4.35
2705 5043 8.423215 GTTAACAGTAGAGTATTTGTTCGTCAC 58.577 37.037 0.00 0.00 35.55 3.67
2706 5044 7.324375 CGTTAACAGTAGAGTATTTGTTCGTCA 59.676 37.037 6.39 0.00 35.55 4.35
2707 5045 7.535258 TCGTTAACAGTAGAGTATTTGTTCGTC 59.465 37.037 6.39 0.00 35.55 4.20
2708 5046 7.362662 TCGTTAACAGTAGAGTATTTGTTCGT 58.637 34.615 6.39 0.00 35.55 3.85
2709 5047 7.786305 TCGTTAACAGTAGAGTATTTGTTCG 57.214 36.000 6.39 0.00 35.55 3.95
2710 5048 9.189723 ACTTCGTTAACAGTAGAGTATTTGTTC 57.810 33.333 6.39 0.00 35.55 3.18
2711 5049 9.538508 AACTTCGTTAACAGTAGAGTATTTGTT 57.461 29.630 6.39 0.00 37.51 2.83
2712 5050 9.538508 AAACTTCGTTAACAGTAGAGTATTTGT 57.461 29.630 6.39 0.00 0.00 2.83
2713 5051 9.793245 CAAACTTCGTTAACAGTAGAGTATTTG 57.207 33.333 6.39 5.43 0.00 2.32
2714 5052 8.985805 CCAAACTTCGTTAACAGTAGAGTATTT 58.014 33.333 6.39 0.00 0.00 1.40
2715 5053 7.601508 CCCAAACTTCGTTAACAGTAGAGTATT 59.398 37.037 6.39 0.00 0.00 1.89
2716 5054 7.095270 CCCAAACTTCGTTAACAGTAGAGTAT 58.905 38.462 6.39 0.00 0.00 2.12
2717 5055 6.449698 CCCAAACTTCGTTAACAGTAGAGTA 58.550 40.000 6.39 0.00 0.00 2.59
2718 5056 5.295152 CCCAAACTTCGTTAACAGTAGAGT 58.705 41.667 6.39 0.00 0.00 3.24
2719 5057 4.151867 GCCCAAACTTCGTTAACAGTAGAG 59.848 45.833 6.39 0.00 0.00 2.43
2720 5058 4.060205 GCCCAAACTTCGTTAACAGTAGA 58.940 43.478 6.39 0.00 0.00 2.59
2721 5059 3.120786 CGCCCAAACTTCGTTAACAGTAG 60.121 47.826 6.39 4.77 0.00 2.57
2722 5060 2.801679 CGCCCAAACTTCGTTAACAGTA 59.198 45.455 6.39 0.00 0.00 2.74
2723 5061 1.600485 CGCCCAAACTTCGTTAACAGT 59.400 47.619 6.39 0.00 0.00 3.55
2724 5062 1.662026 GCGCCCAAACTTCGTTAACAG 60.662 52.381 6.39 0.00 0.00 3.16
2725 5063 0.308376 GCGCCCAAACTTCGTTAACA 59.692 50.000 6.39 0.00 0.00 2.41
2726 5064 0.723459 CGCGCCCAAACTTCGTTAAC 60.723 55.000 0.00 0.00 0.00 2.01
2727 5065 1.159098 ACGCGCCCAAACTTCGTTAA 61.159 50.000 5.73 0.00 0.00 2.01
2728 5066 1.594836 ACGCGCCCAAACTTCGTTA 60.595 52.632 5.73 0.00 0.00 3.18
2729 5067 2.898343 ACGCGCCCAAACTTCGTT 60.898 55.556 5.73 0.00 0.00 3.85
2730 5068 3.645975 CACGCGCCCAAACTTCGT 61.646 61.111 5.73 0.00 0.00 3.85
2731 5069 3.645975 ACACGCGCCCAAACTTCG 61.646 61.111 5.73 0.00 0.00 3.79
2732 5070 2.051345 CACACGCGCCCAAACTTC 60.051 61.111 5.73 0.00 0.00 3.01
2733 5071 4.264638 GCACACGCGCCCAAACTT 62.265 61.111 5.73 0.00 0.00 2.66
2735 5073 4.980903 CAGCACACGCGCCCAAAC 62.981 66.667 5.73 0.00 45.49 2.93
2740 5078 3.651480 GAATGACAGCACACGCGCC 62.651 63.158 5.73 0.00 45.49 6.53
2741 5079 2.202222 GAATGACAGCACACGCGC 60.202 61.111 5.73 0.00 45.49 6.86
2742 5080 1.131218 CTGAATGACAGCACACGCG 59.869 57.895 3.53 3.53 45.49 6.01
2775 5113 3.488489 CAAATCTTTTGCCTCCGTTACG 58.512 45.455 0.00 0.00 0.00 3.18
2776 5114 3.242518 GCAAATCTTTTGCCTCCGTTAC 58.757 45.455 12.74 0.00 39.38 2.50
2777 5115 3.569250 GCAAATCTTTTGCCTCCGTTA 57.431 42.857 12.74 0.00 39.38 3.18
2778 5116 2.438868 GCAAATCTTTTGCCTCCGTT 57.561 45.000 12.74 0.00 39.38 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.