Multiple sequence alignment - TraesCS1A01G193400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G193400 chr1A 100.000 7290 0 0 1 7290 350402039 350394750 0.000000e+00 13463.0
1 TraesCS1A01G193400 chr1D 93.890 6874 215 66 162 6885 278111456 278104638 0.000000e+00 10178.0
2 TraesCS1A01G193400 chr1D 90.634 363 25 5 6937 7290 278104629 278104267 2.380000e-129 473.0
3 TraesCS1A01G193400 chr1D 95.614 114 3 2 1 114 278111578 278111467 1.620000e-41 182.0
4 TraesCS1A01G193400 chr1B 92.747 5363 226 51 1 5243 377970981 377965662 0.000000e+00 7598.0
5 TraesCS1A01G193400 chr1B 94.835 1549 46 10 5361 6885 377965580 377964042 0.000000e+00 2386.0
6 TraesCS1A01G193400 chr1B 92.486 173 9 4 7049 7218 377963854 377963683 2.030000e-60 244.0
7 TraesCS1A01G193400 chr1B 88.372 129 8 3 6937 7058 377964033 377963905 1.640000e-31 148.0
8 TraesCS1A01G193400 chr1B 100.000 41 0 0 5320 5360 377965645 377965605 7.840000e-10 76.8
9 TraesCS1A01G193400 chr3D 80.156 514 57 17 2474 2980 178587878 178587403 7.000000e-90 342.0
10 TraesCS1A01G193400 chr3B 80.698 430 56 14 2551 2980 228502180 228502582 7.100000e-80 309.0
11 TraesCS1A01G193400 chr5D 81.918 365 47 12 2617 2980 404857949 404858295 2.570000e-74 291.0
12 TraesCS1A01G193400 chr6D 88.462 130 14 1 1771 1900 413272373 413272245 9.790000e-34 156.0
13 TraesCS1A01G193400 chr6D 85.366 123 14 4 1773 1893 335068116 335067996 2.760000e-24 124.0
14 TraesCS1A01G193400 chr6A 88.889 126 14 0 1771 1896 558788606 558788481 9.790000e-34 156.0
15 TraesCS1A01G193400 chr6A 85.246 122 16 2 1773 1893 474333558 474333438 2.760000e-24 124.0
16 TraesCS1A01G193400 chr5A 93.137 102 3 2 6764 6861 34869439 34869338 5.890000e-31 147.0
17 TraesCS1A01G193400 chr6B 85.827 127 18 0 1770 1896 623084110 623083984 1.280000e-27 135.0
18 TraesCS1A01G193400 chr6B 84.615 130 14 6 1767 1893 485537656 485537782 2.760000e-24 124.0
19 TraesCS1A01G193400 chr7D 83.871 124 18 2 1771 1893 119568768 119568646 4.620000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G193400 chr1A 350394750 350402039 7289 True 13463.00 13463 100.000000 1 7290 1 chr1A.!!$R1 7289
1 TraesCS1A01G193400 chr1D 278104267 278111578 7311 True 3611.00 10178 93.379333 1 7290 3 chr1D.!!$R1 7289
2 TraesCS1A01G193400 chr1B 377963683 377970981 7298 True 2090.56 7598 93.688000 1 7218 5 chr1B.!!$R1 7217

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
735 805 0.186386 GAGGGAGGAGGGATCGAGAA 59.814 60.0 0.00 0.00 0.00 2.87 F
1424 1515 0.035439 CGTTATGGGTGGGCTTCACT 60.035 55.0 9.77 0.00 45.38 3.41 F
2514 2630 0.249955 TGATGGAGCTCGCATCAACA 59.750 50.0 29.94 16.77 33.65 3.33 F
3393 3550 0.528017 TGAGCTCTGACACGTGGATC 59.472 55.0 21.57 9.94 0.00 3.36 F
4638 4818 0.171231 GCCACAAATTCGCTCCTTCC 59.829 55.0 0.00 0.00 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2154 2245 0.036388 CACCATTAGCCCGTGTGAGT 60.036 55.000 0.00 0.00 0.00 3.41 R
3315 3445 0.179468 ATGCATGCATTGGGCCTTTC 59.821 50.000 27.46 0.00 43.89 2.62 R
4111 4281 0.320421 TTAGCACAGAAGGCGGTGAC 60.320 55.000 0.00 0.00 41.89 3.67 R
5022 5202 1.379443 ATGCATGTGACCAGCCTGG 60.379 57.895 9.83 9.83 45.02 4.45 R
6405 6635 0.250295 CAAGAGACCCTTCCGTTGCA 60.250 55.000 0.00 0.00 31.42 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
196 210 1.887198 GTTGACCTCTCTCTCCGTCAA 59.113 52.381 0.00 0.00 41.60 3.18
197 211 1.827681 TGACCTCTCTCTCCGTCAAG 58.172 55.000 0.00 0.00 32.51 3.02
235 259 3.475774 GCGTCCGTTACCGTGCTG 61.476 66.667 0.00 0.00 0.00 4.41
257 298 4.011517 GAGGCGGTGGGACGGAAA 62.012 66.667 0.00 0.00 0.00 3.13
258 299 3.952628 GAGGCGGTGGGACGGAAAG 62.953 68.421 0.00 0.00 0.00 2.62
259 300 4.011517 GGCGGTGGGACGGAAAGA 62.012 66.667 0.00 0.00 0.00 2.52
260 301 2.741211 GCGGTGGGACGGAAAGAC 60.741 66.667 0.00 0.00 0.00 3.01
261 302 2.431942 CGGTGGGACGGAAAGACG 60.432 66.667 0.00 0.00 40.31 4.18
262 303 2.047560 GGTGGGACGGAAAGACGG 60.048 66.667 0.00 0.00 38.39 4.79
263 304 2.047560 GTGGGACGGAAAGACGGG 60.048 66.667 0.00 0.00 38.39 5.28
264 305 4.011517 TGGGACGGAAAGACGGGC 62.012 66.667 0.00 0.00 38.39 6.13
609 660 2.251642 GCTCCCGTCACTGCGTTTT 61.252 57.895 0.00 0.00 0.00 2.43
621 672 3.482110 CACTGCGTTTTGTTCTTTGCTAC 59.518 43.478 0.00 0.00 0.00 3.58
734 804 1.847686 GAGGGAGGAGGGATCGAGA 59.152 63.158 0.00 0.00 0.00 4.04
735 805 0.186386 GAGGGAGGAGGGATCGAGAA 59.814 60.000 0.00 0.00 0.00 2.87
964 1043 1.972660 AATCTTCTTCCCCCTCCGCG 61.973 60.000 0.00 0.00 0.00 6.46
1028 1107 5.768164 TCACCTTGGTTTTTACTCCATCTTC 59.232 40.000 0.00 0.00 33.50 2.87
1334 1417 6.484540 GTCTTCATCTTGTCTGTTGCATATG 58.515 40.000 0.00 0.00 0.00 1.78
1424 1515 0.035439 CGTTATGGGTGGGCTTCACT 60.035 55.000 9.77 0.00 45.38 3.41
1429 1520 3.365265 GGTGGGCTTCACTTGGCG 61.365 66.667 9.77 0.00 45.38 5.69
1522 1613 2.430921 CTCAGCTTCGCCGACGTT 60.431 61.111 0.00 0.00 41.18 3.99
1704 1795 6.622245 GCGTAAGAAATAAGAACCAAACCTCC 60.622 42.308 0.00 0.00 43.02 4.30
1756 1847 4.200851 CTGACTCATGCGCGCGTG 62.201 66.667 40.31 40.31 0.00 5.34
1894 1985 3.120385 CGCACGCAGATGAAGGCA 61.120 61.111 0.00 0.00 0.00 4.75
1966 2057 0.603569 AGACAGACAACTACCGCCTG 59.396 55.000 0.00 0.00 0.00 4.85
2147 2238 4.330074 GCCTGCTAGTGTTACTGTAATGTG 59.670 45.833 3.23 0.00 0.00 3.21
2148 2239 5.479306 CCTGCTAGTGTTACTGTAATGTGT 58.521 41.667 3.23 0.00 0.00 3.72
2149 2240 6.627243 CCTGCTAGTGTTACTGTAATGTGTA 58.373 40.000 3.23 0.00 0.00 2.90
2151 2242 7.764443 CCTGCTAGTGTTACTGTAATGTGTAAT 59.236 37.037 3.23 0.00 32.32 1.89
2152 2243 8.474006 TGCTAGTGTTACTGTAATGTGTAATG 57.526 34.615 3.23 0.00 32.32 1.90
2154 2245 9.577110 GCTAGTGTTACTGTAATGTGTAATGTA 57.423 33.333 3.23 0.00 32.32 2.29
2490 2606 0.843309 TCCAGGAGCAGGACAAACAA 59.157 50.000 0.00 0.00 0.00 2.83
2514 2630 0.249955 TGATGGAGCTCGCATCAACA 59.750 50.000 29.94 16.77 33.65 3.33
2523 2639 3.204827 GCATCAACAGCCGCCGAT 61.205 61.111 0.00 0.00 0.00 4.18
2619 2735 1.812922 CATGGACGCAGAGGAGCAC 60.813 63.158 0.00 0.00 0.00 4.40
2661 2777 2.125350 GACTCCGGGAAGCAGCAG 60.125 66.667 0.00 0.00 0.00 4.24
2665 2781 4.711949 CCGGGAAGCAGCAGCAGT 62.712 66.667 3.17 0.00 45.49 4.40
2680 2796 2.597805 AGTCTGACGTCGCCCACT 60.598 61.111 11.62 6.86 0.00 4.00
2760 2876 4.415332 GACGCCTTCCTCGACGCA 62.415 66.667 0.00 0.00 0.00 5.24
2789 2905 6.013379 AGTCCAGTTCATCAACTTCCATCTTA 60.013 38.462 0.00 0.00 41.24 2.10
2847 2963 6.913132 CGTACGTCAGATTAACTTGAGATCAT 59.087 38.462 7.22 0.00 0.00 2.45
2976 3092 5.599732 CAGTGGATCTCTCATCTTGGTAAG 58.400 45.833 0.00 0.00 0.00 2.34
2992 3108 3.847780 TGGTAAGCACCCCATTTACTACT 59.152 43.478 0.00 0.00 45.11 2.57
3004 3120 6.703165 CCCCATTTACTACTACATCGGTTAAC 59.297 42.308 0.00 0.00 0.00 2.01
3007 3123 5.559427 TTACTACTACATCGGTTAACGCA 57.441 39.130 0.00 0.00 43.86 5.24
3009 3125 5.002464 ACTACTACATCGGTTAACGCATT 57.998 39.130 0.00 0.00 43.86 3.56
3010 3126 5.039333 ACTACTACATCGGTTAACGCATTC 58.961 41.667 0.00 0.00 43.86 2.67
3012 3128 4.247258 ACTACATCGGTTAACGCATTCAA 58.753 39.130 0.00 0.00 43.86 2.69
3017 3133 2.095213 TCGGTTAACGCATTCAAGCATC 59.905 45.455 0.00 0.00 43.86 3.91
3031 3147 3.495753 TCAAGCATCCATCGATCGATTTG 59.504 43.478 27.45 24.70 31.62 2.32
3056 3172 5.733620 AGTTGATTGGTTTGCTGATGAAT 57.266 34.783 0.00 0.00 0.00 2.57
3058 3174 4.459390 TGATTGGTTTGCTGATGAATGG 57.541 40.909 0.00 0.00 0.00 3.16
3393 3550 0.528017 TGAGCTCTGACACGTGGATC 59.472 55.000 21.57 9.94 0.00 3.36
3424 3581 1.074775 GTGGGTGGAGCACATGGAA 59.925 57.895 0.00 0.00 35.86 3.53
3517 3674 1.913762 CAGGTGGGTCTCCGTCCTT 60.914 63.158 0.00 0.00 37.71 3.36
3682 3842 2.083002 TGCTTGTGAATTGCGATGCTA 58.917 42.857 0.00 0.00 0.00 3.49
3687 3847 4.961435 TGTGAATTGCGATGCTAAATCA 57.039 36.364 0.00 0.00 0.00 2.57
3763 3930 1.055849 TAGTGGTTCTTGCCTGCTCA 58.944 50.000 0.00 0.00 0.00 4.26
3820 3987 5.925969 GCCAATGCTTAGTTGCTTCTTTAAA 59.074 36.000 0.00 0.00 33.53 1.52
3821 3988 6.423604 GCCAATGCTTAGTTGCTTCTTTAAAA 59.576 34.615 0.00 0.00 33.53 1.52
3822 3989 7.569408 GCCAATGCTTAGTTGCTTCTTTAAAAC 60.569 37.037 0.00 0.00 33.53 2.43
3906 4076 6.760298 TGTGTACATGGTCGTTTACTTGTTTA 59.240 34.615 0.00 0.00 0.00 2.01
3907 4077 7.441760 TGTGTACATGGTCGTTTACTTGTTTAT 59.558 33.333 0.00 0.00 0.00 1.40
3908 4078 8.924691 GTGTACATGGTCGTTTACTTGTTTATA 58.075 33.333 0.00 0.00 0.00 0.98
3937 4107 4.624024 CGAGTGCTGCAATTTCAATCATTT 59.376 37.500 2.77 0.00 0.00 2.32
3959 4129 2.501723 TCTTGGGATCTTCTACACTGGC 59.498 50.000 0.00 0.00 0.00 4.85
3966 4136 4.202070 GGATCTTCTACACTGGCTGTACTC 60.202 50.000 0.00 0.00 33.91 2.59
3967 4137 2.747989 TCTTCTACACTGGCTGTACTCG 59.252 50.000 0.00 0.00 33.91 4.18
4042 4212 6.483640 ACAAGAGCCTAATCGTATTGATTTCC 59.516 38.462 0.00 0.00 45.06 3.13
4044 4214 6.591935 AGAGCCTAATCGTATTGATTTCCAA 58.408 36.000 0.00 0.00 45.06 3.53
4045 4215 7.227156 AGAGCCTAATCGTATTGATTTCCAAT 58.773 34.615 0.00 0.00 45.06 3.16
4086 4256 1.376037 CCCTGAGGCGAGGACAAAC 60.376 63.158 7.15 0.00 34.69 2.93
4111 4281 1.829849 TGAAGCTGTCTCAGAGGATGG 59.170 52.381 0.00 0.00 32.44 3.51
4337 4507 1.725641 CGCTGTCAGGTAGCAATGAA 58.274 50.000 1.14 0.00 41.18 2.57
4394 4574 8.617809 TGTTAGTGTTGGTTATCTTCTTCAAAC 58.382 33.333 0.00 0.00 0.00 2.93
4396 4576 7.639113 AGTGTTGGTTATCTTCTTCAAACAA 57.361 32.000 0.00 0.00 0.00 2.83
4397 4577 8.062065 AGTGTTGGTTATCTTCTTCAAACAAA 57.938 30.769 0.00 0.00 31.13 2.83
4426 4606 2.927477 GTTTATCAGTTCCGTGATGCGA 59.073 45.455 0.00 0.00 44.77 5.10
4553 4733 7.324935 TCGCATAAATGTAAGTACTCTTTCCA 58.675 34.615 0.00 0.00 35.36 3.53
4562 4742 3.488363 AGTACTCTTTCCAGTCGTCACT 58.512 45.455 0.00 0.00 0.00 3.41
4578 4758 3.615110 CGTCACTAGTTCTGAATGCTGGT 60.615 47.826 0.00 0.00 0.00 4.00
4597 4777 5.762045 CTGGTGTTCCTTTGTACTTGAATG 58.238 41.667 0.00 0.00 34.23 2.67
4638 4818 0.171231 GCCACAAATTCGCTCCTTCC 59.829 55.000 0.00 0.00 0.00 3.46
4685 4865 8.262227 TCTTTCTTTGGTAACTAGAACTTCACA 58.738 33.333 0.00 0.00 37.57 3.58
4708 4888 8.029522 CACATGTACTTAGTATCTATGCCGAAT 58.970 37.037 0.00 0.00 0.00 3.34
4715 4895 8.679100 ACTTAGTATCTATGCCGAATGAGTATC 58.321 37.037 0.00 0.00 0.00 2.24
4746 4926 9.846248 CAATTTTTCACCTCCTAAATCTTACTG 57.154 33.333 0.00 0.00 0.00 2.74
4747 4927 9.807921 AATTTTTCACCTCCTAAATCTTACTGA 57.192 29.630 0.00 0.00 0.00 3.41
4748 4928 8.617290 TTTTTCACCTCCTAAATCTTACTGAC 57.383 34.615 0.00 0.00 0.00 3.51
4760 4940 6.525578 AATCTTACTGACGACCATGTAGAA 57.474 37.500 0.00 0.00 0.00 2.10
4793 4973 9.988350 ATATAATGTTTTAGTGCTTTCGACAAG 57.012 29.630 0.00 0.00 0.00 3.16
4794 4974 3.947626 TGTTTTAGTGCTTTCGACAAGC 58.052 40.909 19.13 19.13 43.29 4.01
4891 5071 3.664107 TGGCAGTGCTTCTAGTAACTTG 58.336 45.455 16.11 0.00 0.00 3.16
4926 5106 8.073467 ACCAATACCAACATTTTAATAGTGGG 57.927 34.615 0.00 0.00 33.24 4.61
5022 5202 2.143925 GATATTTGTGCGGTCTAGGCC 58.856 52.381 2.21 2.21 0.00 5.19
5147 5330 7.748241 GCTTTTAGATGCAAAGAAAGTAGTCAG 59.252 37.037 13.27 1.26 33.69 3.51
5291 5476 4.381718 GGTCGGTAGATATGGAACTATGGC 60.382 50.000 0.00 0.00 0.00 4.40
5407 5622 5.798934 GCTGACATTTCTGCAACTTTCTATG 59.201 40.000 5.92 0.00 44.15 2.23
5693 5908 4.767255 GGCTGCCTCCTCACCGTG 62.767 72.222 12.43 0.00 0.00 4.94
5783 5998 0.171903 GCCACATCTGCAACACCATC 59.828 55.000 0.00 0.00 0.00 3.51
5940 6155 1.523758 CCACCTGCTAACACCTCAAC 58.476 55.000 0.00 0.00 0.00 3.18
5959 6176 3.451141 ACTATCTGTTAGCAGCTCAGC 57.549 47.619 0.00 0.00 42.29 4.26
6051 6268 5.779771 TCTCAAAATGGCAAAAATACCCTCT 59.220 36.000 0.00 0.00 0.00 3.69
6056 6273 8.527810 CAAAATGGCAAAAATACCCTCTAGTAA 58.472 33.333 0.00 0.00 0.00 2.24
6057 6274 7.640597 AATGGCAAAAATACCCTCTAGTAAC 57.359 36.000 0.00 0.00 0.00 2.50
6064 6281 5.688814 AATACCCTCTAGTAACAACCACC 57.311 43.478 0.00 0.00 0.00 4.61
6170 6387 1.956477 ACCAACACCAACAGAATCAGC 59.044 47.619 0.00 0.00 0.00 4.26
6171 6388 2.233271 CCAACACCAACAGAATCAGCT 58.767 47.619 0.00 0.00 0.00 4.24
6211 6430 1.941668 GCGGTTCTTGCTGCTACTCTT 60.942 52.381 0.00 0.00 37.74 2.85
6405 6635 2.356125 CCATTCGTGATCCTTCCCACTT 60.356 50.000 0.00 0.00 0.00 3.16
6500 6730 9.341899 GGATCATGTTTTGTTATTACTGTGTTC 57.658 33.333 0.00 0.00 0.00 3.18
6501 6731 9.341899 GATCATGTTTTGTTATTACTGTGTTCC 57.658 33.333 0.00 0.00 0.00 3.62
6614 6855 2.507769 GCGCCAGGCTTTGAATGC 60.508 61.111 10.54 0.00 39.11 3.56
6801 7043 4.662650 AGCTTCTGCCTATTTATCCCTTCT 59.337 41.667 0.00 0.00 40.80 2.85
6847 7089 2.126734 GATGCTGCGTGTGGTTGC 60.127 61.111 0.00 0.00 0.00 4.17
6885 7127 5.511373 GCCTCTCATACATAACACCATGCTA 60.511 44.000 0.00 0.00 0.00 3.49
6887 7129 6.592994 CCTCTCATACATAACACCATGCTATG 59.407 42.308 0.00 0.00 33.80 2.23
6888 7130 7.301868 TCTCATACATAACACCATGCTATGA 57.698 36.000 6.30 0.00 32.41 2.15
6889 7131 7.734942 TCTCATACATAACACCATGCTATGAA 58.265 34.615 6.30 0.00 33.52 2.57
6890 7132 7.874528 TCTCATACATAACACCATGCTATGAAG 59.125 37.037 6.30 0.54 33.52 3.02
6892 7134 7.874528 TCATACATAACACCATGCTATGAAGAG 59.125 37.037 6.30 0.00 32.41 2.85
6897 7139 3.118112 ACACCATGCTATGAAGAGGAAGG 60.118 47.826 0.00 0.00 32.42 3.46
6898 7140 2.441001 ACCATGCTATGAAGAGGAAGGG 59.559 50.000 0.00 0.00 30.57 3.95
6899 7141 2.707791 CCATGCTATGAAGAGGAAGGGA 59.292 50.000 0.00 0.00 0.00 4.20
6900 7142 3.137176 CCATGCTATGAAGAGGAAGGGAA 59.863 47.826 0.00 0.00 0.00 3.97
6901 7143 4.387598 CATGCTATGAAGAGGAAGGGAAG 58.612 47.826 0.00 0.00 0.00 3.46
6902 7144 2.774234 TGCTATGAAGAGGAAGGGAAGG 59.226 50.000 0.00 0.00 0.00 3.46
6903 7145 2.105649 GCTATGAAGAGGAAGGGAAGGG 59.894 54.545 0.00 0.00 0.00 3.95
6904 7146 0.922626 ATGAAGAGGAAGGGAAGGGC 59.077 55.000 0.00 0.00 0.00 5.19
6905 7147 0.475632 TGAAGAGGAAGGGAAGGGCA 60.476 55.000 0.00 0.00 0.00 5.36
6906 7148 0.922626 GAAGAGGAAGGGAAGGGCAT 59.077 55.000 0.00 0.00 0.00 4.40
6907 7149 1.286257 GAAGAGGAAGGGAAGGGCATT 59.714 52.381 0.00 0.00 0.00 3.56
6908 7150 0.627986 AGAGGAAGGGAAGGGCATTG 59.372 55.000 0.00 0.00 0.00 2.82
6909 7151 0.332972 GAGGAAGGGAAGGGCATTGT 59.667 55.000 0.00 0.00 0.00 2.71
6910 7152 0.786435 AGGAAGGGAAGGGCATTGTT 59.214 50.000 0.00 0.00 0.00 2.83
6911 7153 1.149923 AGGAAGGGAAGGGCATTGTTT 59.850 47.619 0.00 0.00 0.00 2.83
6912 7154 1.550524 GGAAGGGAAGGGCATTGTTTC 59.449 52.381 0.00 0.00 0.00 2.78
6913 7155 2.247358 GAAGGGAAGGGCATTGTTTCA 58.753 47.619 0.00 0.00 0.00 2.69
6914 7156 2.397044 AGGGAAGGGCATTGTTTCAA 57.603 45.000 0.00 0.00 0.00 2.69
6915 7157 2.688477 AGGGAAGGGCATTGTTTCAAA 58.312 42.857 0.00 0.00 0.00 2.69
6916 7158 2.368548 AGGGAAGGGCATTGTTTCAAAC 59.631 45.455 0.00 0.00 0.00 2.93
6917 7159 2.103941 GGGAAGGGCATTGTTTCAAACA 59.896 45.455 0.00 0.00 40.21 2.83
6990 7232 3.842436 TGCATGCTACCATAGATCTCCAT 59.158 43.478 20.33 0.00 0.00 3.41
6997 7239 5.163561 GCTACCATAGATCTCCATGTCTAGC 60.164 48.000 0.00 7.43 31.05 3.42
7002 7244 6.406065 CCATAGATCTCCATGTCTAGCATCTG 60.406 46.154 0.00 0.00 35.19 2.90
7004 7246 4.523943 AGATCTCCATGTCTAGCATCTGTC 59.476 45.833 0.00 0.00 35.19 3.51
7026 7273 4.859691 TCTATACCACCCCTGCCTATACTA 59.140 45.833 0.00 0.00 0.00 1.82
7031 7278 3.261897 CCACCCCTGCCTATACTAGATTG 59.738 52.174 0.00 0.00 0.00 2.67
7058 7359 1.135431 TGCTTTGACTTGTGTGTGTGC 60.135 47.619 0.00 0.00 0.00 4.57
7059 7360 1.798813 GCTTTGACTTGTGTGTGTGCC 60.799 52.381 0.00 0.00 0.00 5.01
7060 7361 1.472082 CTTTGACTTGTGTGTGTGCCA 59.528 47.619 0.00 0.00 0.00 4.92
7061 7362 1.761449 TTGACTTGTGTGTGTGCCAT 58.239 45.000 0.00 0.00 0.00 4.40
7062 7363 1.023502 TGACTTGTGTGTGTGCCATG 58.976 50.000 0.00 0.00 0.00 3.66
7063 7364 1.024271 GACTTGTGTGTGTGCCATGT 58.976 50.000 0.00 0.00 0.00 3.21
7064 7365 2.217750 GACTTGTGTGTGTGCCATGTA 58.782 47.619 0.00 0.00 0.00 2.29
7065 7366 2.813754 GACTTGTGTGTGTGCCATGTAT 59.186 45.455 0.00 0.00 0.00 2.29
7066 7367 2.813754 ACTTGTGTGTGTGCCATGTATC 59.186 45.455 0.00 0.00 0.00 2.24
7111 7417 0.262876 TCCTCTAGCTGGATCAGGCA 59.737 55.000 0.00 0.00 31.21 4.75
7151 7458 2.039818 TGGTTTTGGCGTACTGACAA 57.960 45.000 2.44 2.44 46.38 3.18
7195 7502 4.497300 GTGTCCTTGCATGCATGTTTTAT 58.503 39.130 26.79 0.00 0.00 1.40
7196 7503 4.563976 GTGTCCTTGCATGCATGTTTTATC 59.436 41.667 26.79 14.29 0.00 1.75
7197 7504 4.220163 TGTCCTTGCATGCATGTTTTATCA 59.780 37.500 26.79 16.40 0.00 2.15
7198 7505 5.105269 TGTCCTTGCATGCATGTTTTATCAT 60.105 36.000 26.79 0.00 0.00 2.45
7199 7506 5.461078 GTCCTTGCATGCATGTTTTATCATC 59.539 40.000 26.79 8.24 0.00 2.92
7201 7510 6.046593 CCTTGCATGCATGTTTTATCATCTT 58.953 36.000 26.79 0.00 0.00 2.40
7227 7536 8.862325 TCTTTAATCAAAGGCATTCTACTGAA 57.138 30.769 0.00 0.00 41.35 3.02
7259 7568 3.131478 GGATCACCAAACCGCCCG 61.131 66.667 0.00 0.00 35.97 6.13
7263 7572 3.679738 CACCAAACCGCCCGCAAT 61.680 61.111 0.00 0.00 0.00 3.56
7264 7573 2.915137 ACCAAACCGCCCGCAATT 60.915 55.556 0.00 0.00 0.00 2.32
7265 7574 2.432285 CCAAACCGCCCGCAATTG 60.432 61.111 0.00 0.00 0.00 2.32
7274 7583 1.586028 CCCGCAATTGTCCCAACTG 59.414 57.895 7.40 0.00 0.00 3.16
7285 7594 2.435069 TGTCCCAACTGAACGGTCTTTA 59.565 45.455 0.33 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 2.050168 TGTCGTGTTCGCGTACCC 60.050 61.111 13.52 0.27 36.96 3.69
15 16 1.005294 ATGTGTCGTGTTCGCGTACC 61.005 55.000 13.52 4.07 36.96 3.34
74 75 3.546543 GGCGGATCCGTCCATGGA 61.547 66.667 33.33 11.44 45.37 3.41
196 210 2.728679 GCTCTCGTCGTCGTCGTCT 61.729 63.158 11.41 0.00 38.33 4.18
197 211 2.275935 GCTCTCGTCGTCGTCGTC 60.276 66.667 11.41 0.00 38.33 4.20
252 293 4.692475 AACCCGCCCGTCTTTCCG 62.692 66.667 0.00 0.00 0.00 4.30
253 294 2.745100 GAACCCGCCCGTCTTTCC 60.745 66.667 0.00 0.00 0.00 3.13
254 295 2.031465 TGAACCCGCCCGTCTTTC 59.969 61.111 0.00 0.00 0.00 2.62
255 296 2.281276 GTGAACCCGCCCGTCTTT 60.281 61.111 0.00 0.00 0.00 2.52
256 297 4.675029 CGTGAACCCGCCCGTCTT 62.675 66.667 0.00 0.00 0.00 3.01
447 497 2.388232 GCGAAACGATTCCCACGCT 61.388 57.895 0.00 0.00 42.19 5.07
534 584 4.337060 GTTGAAACCGCGTGGGCC 62.337 66.667 21.14 8.24 40.62 5.80
609 660 4.755123 GCTTTGACCTAGTAGCAAAGAACA 59.245 41.667 23.63 4.24 46.98 3.18
621 672 1.202200 CGACTCCTCGCTTTGACCTAG 60.202 57.143 0.00 0.00 31.91 3.02
734 804 0.602060 GACGGGGAAGACGAACTCTT 59.398 55.000 0.00 0.00 42.40 2.85
735 805 0.251253 AGACGGGGAAGACGAACTCT 60.251 55.000 0.00 0.00 34.93 3.24
987 1066 1.204941 GTGAGGACGAAGCATGGTAGT 59.795 52.381 0.00 1.20 0.00 2.73
1028 1107 2.669569 CCTGCAGTGGTTCACCGG 60.670 66.667 13.81 0.00 39.43 5.28
1424 1515 1.469335 AACTCCTCGTCCTTCGCCAA 61.469 55.000 0.00 0.00 39.67 4.52
1429 1520 0.246910 GGTCCAACTCCTCGTCCTTC 59.753 60.000 0.00 0.00 0.00 3.46
1495 1586 1.803519 GAAGCTGAGCAGACCGTCG 60.804 63.158 7.39 0.00 0.00 5.12
1522 1613 2.203379 TGGTCCCTGTCGTCGTCA 60.203 61.111 0.00 0.00 0.00 4.35
1704 1795 8.201554 TCAGGAAGATTTTCGTCATTAAGATG 57.798 34.615 0.00 0.00 33.98 2.90
1745 1836 4.874282 CATCCACACGCGCGCATG 62.874 66.667 32.58 29.95 0.00 4.06
1756 1847 0.179119 GCCTGCATGAAAGCATCCAC 60.179 55.000 0.00 0.00 44.68 4.02
2147 2238 2.667473 AGCCCGTGTGAGTACATTAC 57.333 50.000 0.00 0.00 39.39 1.89
2148 2239 4.442332 CCATTAGCCCGTGTGAGTACATTA 60.442 45.833 0.00 0.00 39.39 1.90
2149 2240 3.531538 CATTAGCCCGTGTGAGTACATT 58.468 45.455 0.00 0.00 39.39 2.71
2151 2242 1.206132 CCATTAGCCCGTGTGAGTACA 59.794 52.381 0.00 0.00 0.00 2.90
2152 2243 1.206371 ACCATTAGCCCGTGTGAGTAC 59.794 52.381 0.00 0.00 0.00 2.73
2154 2245 0.036388 CACCATTAGCCCGTGTGAGT 60.036 55.000 0.00 0.00 0.00 3.41
2155 2246 0.036388 ACACCATTAGCCCGTGTGAG 60.036 55.000 0.00 0.00 39.22 3.51
2467 2583 3.622514 GTCCTGCTCCTGGACGAT 58.377 61.111 5.68 0.00 41.27 3.73
2490 2606 1.620739 ATGCGAGCTCCATCACCAGT 61.621 55.000 8.47 0.00 0.00 4.00
2514 2630 3.157217 GATGAGGTGATCGGCGGCT 62.157 63.158 7.21 0.00 0.00 5.52
2661 2777 4.357947 TGGGCGACGTCAGACTGC 62.358 66.667 17.16 10.08 0.00 4.40
2665 2781 3.733960 CGAGTGGGCGACGTCAGA 61.734 66.667 17.16 0.00 0.00 3.27
2760 2876 4.503991 GGAAGTTGATGAACTGGACTCACT 60.504 45.833 0.00 0.00 41.87 3.41
2767 2883 6.409704 TCTAAGATGGAAGTTGATGAACTGG 58.590 40.000 0.00 0.00 41.87 4.00
2976 3092 4.056050 CGATGTAGTAGTAAATGGGGTGC 58.944 47.826 0.00 0.00 0.00 5.01
2992 3108 3.062909 GCTTGAATGCGTTAACCGATGTA 59.937 43.478 0.00 0.00 39.56 2.29
3004 3120 0.939419 TCGATGGATGCTTGAATGCG 59.061 50.000 0.00 0.00 35.36 4.73
3007 3123 3.391506 TCGATCGATGGATGCTTGAAT 57.608 42.857 15.15 0.00 31.51 2.57
3009 3125 3.391506 AATCGATCGATGGATGCTTGA 57.608 42.857 29.99 0.00 34.70 3.02
3010 3126 3.364664 CCAAATCGATCGATGGATGCTTG 60.365 47.826 29.99 25.43 34.70 4.01
3012 3128 2.224378 ACCAAATCGATCGATGGATGCT 60.224 45.455 33.69 16.36 34.70 3.79
3017 3133 4.368315 TCAACTACCAAATCGATCGATGG 58.632 43.478 29.99 28.94 34.70 3.51
3031 3147 4.458989 TCATCAGCAAACCAATCAACTACC 59.541 41.667 0.00 0.00 0.00 3.18
3315 3445 0.179468 ATGCATGCATTGGGCCTTTC 59.821 50.000 27.46 0.00 43.89 2.62
3362 3519 1.671328 CAGAGCTCAGTCCATGCATTG 59.329 52.381 17.77 0.00 0.00 2.82
3363 3520 1.558294 TCAGAGCTCAGTCCATGCATT 59.442 47.619 17.77 0.00 0.00 3.56
3424 3581 1.229658 CTTCTCCTCCCCCACCACT 60.230 63.158 0.00 0.00 0.00 4.00
3448 3605 0.536460 GGTCCTTGAAAACCGGCTGA 60.536 55.000 0.00 0.00 0.00 4.26
3588 3745 3.109547 GCGATCGACGTGGTGCAA 61.110 61.111 21.57 0.00 44.60 4.08
3682 3842 9.204570 CGATCGGTTTAGGTAATATCTTGATTT 57.795 33.333 7.38 0.00 0.00 2.17
3687 3847 8.350852 AGATCGATCGGTTTAGGTAATATCTT 57.649 34.615 19.33 0.00 0.00 2.40
3820 3987 4.704540 TGACAGACAAAAGGACATGTTGTT 59.295 37.500 0.00 0.00 35.67 2.83
3821 3988 4.269183 TGACAGACAAAAGGACATGTTGT 58.731 39.130 0.00 0.00 38.17 3.32
3822 3989 4.898829 TGACAGACAAAAGGACATGTTG 57.101 40.909 0.00 0.00 0.00 3.33
3906 4076 5.817296 TGAAATTGCAGCACTCGAGTATTAT 59.183 36.000 19.57 1.23 0.00 1.28
3907 4077 5.175127 TGAAATTGCAGCACTCGAGTATTA 58.825 37.500 19.57 0.29 0.00 0.98
3908 4078 4.002982 TGAAATTGCAGCACTCGAGTATT 58.997 39.130 19.57 10.41 0.00 1.89
3937 4107 3.055094 GCCAGTGTAGAAGATCCCAAGAA 60.055 47.826 0.00 0.00 0.00 2.52
3959 4129 4.495422 ACTGATAAAAGTGGCGAGTACAG 58.505 43.478 0.00 0.00 0.00 2.74
3966 4136 3.667960 GCACAGAACTGATAAAAGTGGCG 60.668 47.826 8.87 0.00 0.00 5.69
3967 4137 3.503748 AGCACAGAACTGATAAAAGTGGC 59.496 43.478 8.87 0.00 0.00 5.01
4042 4212 4.455877 GCGGATAACTGGGATTAGGAATTG 59.544 45.833 0.00 0.00 0.00 2.32
4044 4214 3.650942 TGCGGATAACTGGGATTAGGAAT 59.349 43.478 0.00 0.00 0.00 3.01
4045 4215 3.042682 TGCGGATAACTGGGATTAGGAA 58.957 45.455 0.00 0.00 0.00 3.36
4086 4256 3.132467 TCCTCTGAGACAGCTTCATCATG 59.868 47.826 6.17 0.00 0.00 3.07
4111 4281 0.320421 TTAGCACAGAAGGCGGTGAC 60.320 55.000 0.00 0.00 41.89 3.67
4182 4352 4.002906 TGTTGTAATCCTGACTGTGTCC 57.997 45.455 0.00 0.00 0.00 4.02
4375 4545 9.750125 AGAATTTGTTTGAAGAAGATAACCAAC 57.250 29.630 0.00 0.00 0.00 3.77
4396 4576 6.488683 TCACGGAACTGATAAACCAAAGAATT 59.511 34.615 0.00 0.00 0.00 2.17
4397 4577 6.001460 TCACGGAACTGATAAACCAAAGAAT 58.999 36.000 0.00 0.00 0.00 2.40
4404 4584 2.030457 CGCATCACGGAACTGATAAACC 59.970 50.000 0.00 0.00 38.44 3.27
4405 4585 2.927477 TCGCATCACGGAACTGATAAAC 59.073 45.455 0.00 0.00 43.89 2.01
4553 4733 3.508012 AGCATTCAGAACTAGTGACGACT 59.492 43.478 0.00 0.00 36.07 4.18
4562 4742 3.327757 AGGAACACCAGCATTCAGAACTA 59.672 43.478 0.00 0.00 0.00 2.24
4578 4758 6.978080 GCTTTTCATTCAAGTACAAAGGAACA 59.022 34.615 0.00 0.00 0.00 3.18
4597 4777 3.251004 CCTCTTGGTGTACACAGCTTTTC 59.749 47.826 26.51 8.60 44.12 2.29
4638 4818 7.715265 AAGAGTTATATTATTGAGTGTGCCG 57.285 36.000 0.00 0.00 0.00 5.69
4685 4865 8.349568 TCATTCGGCATAGATACTAAGTACAT 57.650 34.615 0.00 0.00 0.00 2.29
4708 4888 7.121168 GGAGGTGAAAAATTGTGATGATACTCA 59.879 37.037 0.00 0.00 0.00 3.41
4715 4895 8.526147 AGATTTAGGAGGTGAAAAATTGTGATG 58.474 33.333 0.00 0.00 0.00 3.07
4726 4906 5.713389 TCGTCAGTAAGATTTAGGAGGTGAA 59.287 40.000 0.00 0.00 0.00 3.18
4788 4968 6.360414 GCTAAATTTTTGGCATTTTGCTTGTC 59.640 34.615 6.52 0.00 44.28 3.18
4872 5052 3.124297 CAGCAAGTTACTAGAAGCACTGC 59.876 47.826 0.00 0.00 0.00 4.40
4873 5053 4.310769 ACAGCAAGTTACTAGAAGCACTG 58.689 43.478 0.00 0.00 0.00 3.66
4891 5071 6.753107 ATGTTGGTATTGGTAGTAAACAGC 57.247 37.500 0.00 0.00 30.39 4.40
4918 5098 9.582648 AAACAGTAAGTTATTTGACCCACTATT 57.417 29.630 4.84 0.00 40.26 1.73
4926 5106 8.611654 TGGTAGGAAACAGTAAGTTATTTGAC 57.388 34.615 4.84 0.00 40.26 3.18
5022 5202 1.379443 ATGCATGTGACCAGCCTGG 60.379 57.895 9.83 9.83 45.02 4.45
5140 5323 9.543018 GCAACATGTATTTCTAAAACTGACTAC 57.457 33.333 0.00 0.00 0.00 2.73
5147 5330 7.589954 ACAAGACGCAACATGTATTTCTAAAAC 59.410 33.333 0.00 0.00 0.00 2.43
5407 5622 1.586422 TGAGTTGCTTGCAGACTGTC 58.414 50.000 3.99 0.00 0.00 3.51
5549 5764 3.504903 CCATGGGGAGTAGAGGGATGTAT 60.505 52.174 2.85 0.00 35.59 2.29
5643 5858 0.401356 TCTGCATTGCCAGGACTTGA 59.599 50.000 6.12 0.00 33.64 3.02
5645 5860 1.005097 TCATCTGCATTGCCAGGACTT 59.995 47.619 6.12 0.00 33.64 3.01
5783 5998 2.744202 GAGTGCTGTTGTAATCTGGTGG 59.256 50.000 0.00 0.00 0.00 4.61
5940 6155 3.731652 AGCTGAGCTGCTAACAGATAG 57.268 47.619 19.16 4.55 44.20 2.08
5959 6176 2.205022 TGTCAAATCCTCCCTTGCAG 57.795 50.000 0.00 0.00 0.00 4.41
6051 6268 1.840224 GCCCCCGGTGGTTGTTACTA 61.840 60.000 4.39 0.00 0.00 1.82
6056 6273 2.956077 AAAATGCCCCCGGTGGTTGT 62.956 55.000 4.39 0.00 0.00 3.32
6057 6274 2.213513 AAAATGCCCCCGGTGGTTG 61.214 57.895 4.39 0.00 0.00 3.77
6064 6281 2.937799 CAAAATGATCAAAATGCCCCCG 59.062 45.455 0.00 0.00 0.00 5.73
6170 6387 0.251742 TGACCAAAATGCCCTGGGAG 60.252 55.000 19.27 0.00 37.00 4.30
6171 6388 0.413037 ATGACCAAAATGCCCTGGGA 59.587 50.000 19.27 1.59 37.00 4.37
6405 6635 0.250295 CAAGAGACCCTTCCGTTGCA 60.250 55.000 0.00 0.00 31.42 4.08
6500 6730 5.882557 AGATTGCAATGTAAGAAGTACCAGG 59.117 40.000 18.59 0.00 30.94 4.45
6501 6731 6.676456 GCAGATTGCAATGTAAGAAGTACCAG 60.676 42.308 18.59 0.00 44.26 4.00
6614 6855 3.657038 ATGCAGCAGAAGGGCAGGG 62.657 63.158 0.00 0.00 41.40 4.45
6732 6974 3.343972 TGCCTCGCAGCTCAAAAC 58.656 55.556 0.00 0.00 33.32 2.43
6801 7043 0.611062 AGCGGTAGTACAGCACAGGA 60.611 55.000 24.36 0.00 41.80 3.86
6847 7089 2.693864 AGGCATCTCCCCACCCAG 60.694 66.667 0.00 0.00 34.51 4.45
6871 7113 5.614308 TCCTCTTCATAGCATGGTGTTATG 58.386 41.667 7.89 3.67 41.17 1.90
6875 7117 3.118112 CCTTCCTCTTCATAGCATGGTGT 60.118 47.826 7.89 0.00 0.00 4.16
6885 7127 0.922626 GCCCTTCCCTTCCTCTTCAT 59.077 55.000 0.00 0.00 0.00 2.57
6887 7129 0.922626 ATGCCCTTCCCTTCCTCTTC 59.077 55.000 0.00 0.00 0.00 2.87
6888 7130 1.006400 CAATGCCCTTCCCTTCCTCTT 59.994 52.381 0.00 0.00 0.00 2.85
6889 7131 0.627986 CAATGCCCTTCCCTTCCTCT 59.372 55.000 0.00 0.00 0.00 3.69
6890 7132 0.332972 ACAATGCCCTTCCCTTCCTC 59.667 55.000 0.00 0.00 0.00 3.71
6892 7134 1.550524 GAAACAATGCCCTTCCCTTCC 59.449 52.381 0.00 0.00 0.00 3.46
6897 7139 3.467374 TGTTTGAAACAATGCCCTTCC 57.533 42.857 8.51 0.00 38.72 3.46
6928 7170 2.719157 AGAGCCTTCCCTTCCTCTTTTT 59.281 45.455 0.00 0.00 30.91 1.94
6929 7171 2.353349 AGAGCCTTCCCTTCCTCTTTT 58.647 47.619 0.00 0.00 30.91 2.27
6930 7172 2.052249 AGAGCCTTCCCTTCCTCTTT 57.948 50.000 0.00 0.00 30.91 2.52
6931 7173 1.912731 GAAGAGCCTTCCCTTCCTCTT 59.087 52.381 1.75 1.75 44.74 2.85
6932 7174 1.080329 AGAAGAGCCTTCCCTTCCTCT 59.920 52.381 10.27 0.00 39.54 3.69
6933 7175 1.578897 AGAAGAGCCTTCCCTTCCTC 58.421 55.000 10.27 0.00 39.54 3.71
6934 7176 1.912731 GAAGAAGAGCCTTCCCTTCCT 59.087 52.381 10.27 0.00 39.54 3.36
6935 7177 2.411628 GAAGAAGAGCCTTCCCTTCC 57.588 55.000 10.27 0.00 39.54 3.46
6941 7183 1.458398 GGCAAGGAAGAAGAGCCTTC 58.542 55.000 6.79 6.79 42.41 3.46
6990 7232 4.827835 GGTGGTATAGACAGATGCTAGACA 59.172 45.833 0.00 0.00 33.04 3.41
6997 7239 2.037772 GCAGGGGTGGTATAGACAGATG 59.962 54.545 0.00 0.00 0.00 2.90
7002 7244 2.393630 TAGGCAGGGGTGGTATAGAC 57.606 55.000 0.00 0.00 0.00 2.59
7004 7246 4.062490 AGTATAGGCAGGGGTGGTATAG 57.938 50.000 0.00 0.00 0.00 1.31
7026 7273 5.069516 ACAAGTCAAAGCATCAAACCAATCT 59.930 36.000 0.00 0.00 0.00 2.40
7031 7278 3.798337 CACACAAGTCAAAGCATCAAACC 59.202 43.478 0.00 0.00 0.00 3.27
7058 7359 8.925039 GCATGCAGCTACATTTGGATACATGG 62.925 46.154 14.21 0.00 44.35 3.66
7059 7360 6.071928 GCATGCAGCTACATTTGGATACATG 61.072 44.000 14.21 0.00 44.35 3.21
7060 7361 4.022589 GCATGCAGCTACATTTGGATACAT 60.023 41.667 14.21 0.00 44.35 2.29
7061 7362 3.316029 GCATGCAGCTACATTTGGATACA 59.684 43.478 14.21 0.00 43.52 2.29
7062 7363 3.316029 TGCATGCAGCTACATTTGGATAC 59.684 43.478 18.46 0.00 45.94 2.24
7063 7364 3.553904 TGCATGCAGCTACATTTGGATA 58.446 40.909 18.46 0.00 45.94 2.59
7064 7365 2.380941 TGCATGCAGCTACATTTGGAT 58.619 42.857 18.46 0.00 45.94 3.41
7065 7366 1.836802 TGCATGCAGCTACATTTGGA 58.163 45.000 18.46 0.00 45.94 3.53
7066 7367 2.469826 CATGCATGCAGCTACATTTGG 58.530 47.619 26.69 1.47 45.94 3.28
7111 7417 3.870549 ATCTGAAGATAGAGGGCCCCCT 61.871 54.545 21.43 16.63 40.29 4.79
7151 7458 1.178534 CCAACCTTTGGTGCGGTCAT 61.179 55.000 0.00 0.00 45.93 3.06
7195 7502 9.028284 AGAATGCCTTTGATTAAAGAAAGATGA 57.972 29.630 11.34 0.00 44.87 2.92
7198 7505 9.520515 AGTAGAATGCCTTTGATTAAAGAAAGA 57.479 29.630 11.34 0.00 44.87 2.52
7199 7506 9.565213 CAGTAGAATGCCTTTGATTAAAGAAAG 57.435 33.333 11.34 0.00 44.87 2.62
7201 7510 8.862325 TCAGTAGAATGCCTTTGATTAAAGAA 57.138 30.769 11.34 0.35 44.87 2.52
7210 7519 3.084039 TGCCTTCAGTAGAATGCCTTTG 58.916 45.455 0.00 0.00 42.52 2.77
7227 7536 3.236391 TCCACGTTGGAGTTGCCT 58.764 55.556 3.02 0.00 42.67 4.75
7240 7549 2.340328 GGGCGGTTTGGTGATCCAC 61.340 63.158 0.00 0.00 44.22 4.02
7248 7557 2.432285 CAATTGCGGGCGGTTTGG 60.432 61.111 0.00 0.00 0.00 3.28
7264 7573 0.834612 AAGACCGTTCAGTTGGGACA 59.165 50.000 0.00 0.00 0.00 4.02
7265 7574 1.963172 AAAGACCGTTCAGTTGGGAC 58.037 50.000 0.00 0.00 0.00 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.