Multiple sequence alignment - TraesCS1A01G193000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G193000 chr1A 100.000 6216 0 0 1 6216 348722632 348716417 0.000000e+00 11479.0
1 TraesCS1A01G193000 chr1A 94.297 263 10 3 4184 4441 497217151 497217413 1.260000e-106 398.0
2 TraesCS1A01G193000 chr1A 95.489 133 5 1 3187 3318 3261587 3261719 1.760000e-50 211.0
3 TraesCS1A01G193000 chr1A 77.236 246 50 4 201 443 554926369 554926611 8.400000e-29 139.0
4 TraesCS1A01G193000 chr1A 92.308 52 2 2 4136 4187 464800309 464800358 8.640000e-09 73.1
5 TraesCS1A01G193000 chr1A 95.349 43 2 0 4145 4187 40557420 40557462 1.120000e-07 69.4
6 TraesCS1A01G193000 chr1D 95.173 2424 69 15 785 3192 276535458 276533067 0.000000e+00 3784.0
7 TraesCS1A01G193000 chr1D 94.249 852 30 8 4499 5343 276532118 276531279 0.000000e+00 1284.0
8 TraesCS1A01G193000 chr1D 93.617 799 26 5 3354 4150 276532909 276532134 0.000000e+00 1170.0
9 TraesCS1A01G193000 chr1D 93.594 640 19 13 5291 5926 276531283 276530662 0.000000e+00 935.0
10 TraesCS1A01G193000 chr1D 90.272 257 7 2 5976 6214 276530668 276530412 2.800000e-83 320.0
11 TraesCS1A01G193000 chr1D 95.349 43 2 0 4145 4187 386814922 386814964 1.120000e-07 69.4
12 TraesCS1A01G193000 chr1D 95.238 42 2 0 4146 4187 275529300 275529259 4.020000e-07 67.6
13 TraesCS1A01G193000 chr1D 97.436 39 1 0 4149 4187 280717614 280717576 4.020000e-07 67.6
14 TraesCS1A01G193000 chr1D 95.238 42 2 0 4146 4187 345434010 345434051 4.020000e-07 67.6
15 TraesCS1A01G193000 chr1D 93.182 44 3 0 4144 4187 16503769 16503726 1.450000e-06 65.8
16 TraesCS1A01G193000 chr1B 93.717 2435 86 22 800 3216 375821684 375819299 0.000000e+00 3587.0
17 TraesCS1A01G193000 chr1B 90.528 1668 101 26 4564 6210 375818240 375816609 0.000000e+00 2152.0
18 TraesCS1A01G193000 chr1B 92.356 798 38 3 3354 4150 375819080 375818305 0.000000e+00 1114.0
19 TraesCS1A01G193000 chr1B 77.754 463 101 2 4 465 4782846 4783307 3.670000e-72 283.0
20 TraesCS1A01G193000 chr1B 95.420 131 6 0 3191 3321 348608278 348608148 6.310000e-50 209.0
21 TraesCS1A01G193000 chr1B 76.613 248 48 6 201 443 602166535 602166777 1.820000e-25 128.0
22 TraesCS1A01G193000 chr1B 95.522 67 3 0 4430 4496 41091142 41091208 2.370000e-19 108.0
23 TraesCS1A01G193000 chr1B 84.211 76 8 4 4116 4190 4065529 4065601 3.110000e-08 71.3
24 TraesCS1A01G193000 chr1B 82.609 69 9 2 660 727 421432851 421432785 2.420000e-04 58.4
25 TraesCS1A01G193000 chr2A 96.159 729 26 1 1 729 530572718 530571992 0.000000e+00 1190.0
26 TraesCS1A01G193000 chr2A 91.246 674 51 4 1 672 174020650 174021317 0.000000e+00 911.0
27 TraesCS1A01G193000 chr2A 95.911 269 4 5 4185 4448 715888576 715888842 4.450000e-116 429.0
28 TraesCS1A01G193000 chr5B 87.022 732 83 10 1 727 603469897 603469173 0.000000e+00 815.0
29 TraesCS1A01G193000 chr5B 94.400 125 7 0 1377 1501 704243023 704242899 6.360000e-45 193.0
30 TraesCS1A01G193000 chr5B 100.000 60 0 0 4437 4496 78734398 78734339 1.830000e-20 111.0
31 TraesCS1A01G193000 chr5B 94.118 68 4 0 4429 4496 440026087 440026020 3.070000e-18 104.0
32 TraesCS1A01G193000 chr5B 95.745 47 2 0 4141 4187 592721770 592721724 6.680000e-10 76.8
33 TraesCS1A01G193000 chr7A 80.848 731 126 11 1 727 642932660 642933380 4.210000e-156 562.0
34 TraesCS1A01G193000 chr7A 77.236 246 50 4 201 443 85224236 85223994 8.400000e-29 139.0
35 TraesCS1A01G193000 chr2B 80.464 732 129 11 1 728 516282500 516283221 1.180000e-151 547.0
36 TraesCS1A01G193000 chr2B 94.737 133 7 0 3186 3318 325845888 325845756 2.270000e-49 207.0
37 TraesCS1A01G193000 chr2B 92.857 140 9 1 3187 3325 231666943 231667082 1.060000e-47 202.0
38 TraesCS1A01G193000 chr2B 90.604 149 12 2 3183 3330 185875439 185875586 4.920000e-46 196.0
39 TraesCS1A01G193000 chr2B 90.909 55 4 1 4144 4197 582299475 582299529 8.640000e-09 73.1
40 TraesCS1A01G193000 chr2B 95.556 45 2 0 4143 4187 754925842 754925798 8.640000e-09 73.1
41 TraesCS1A01G193000 chr6B 80.384 729 127 14 4 727 57129795 57129078 1.970000e-149 540.0
42 TraesCS1A01G193000 chr6B 94.891 137 4 3 3184 3318 495435565 495435700 1.760000e-50 211.0
43 TraesCS1A01G193000 chr6B 94.697 132 7 0 3187 3318 81012013 81012144 8.170000e-49 206.0
44 TraesCS1A01G193000 chr6B 95.588 68 3 0 4429 4496 534956437 534956504 6.590000e-20 110.0
45 TraesCS1A01G193000 chr6B 77.714 175 35 4 201 373 75003791 75003619 3.070000e-18 104.0
46 TraesCS1A01G193000 chr6B 76.214 206 43 6 170 372 648665893 648666095 3.070000e-18 104.0
47 TraesCS1A01G193000 chr4A 96.183 262 5 3 4185 4441 47406166 47406427 2.070000e-114 424.0
48 TraesCS1A01G193000 chr4A 95.833 264 6 3 4185 4443 58911797 58911534 7.450000e-114 422.0
49 TraesCS1A01G193000 chr4A 94.361 266 10 3 4181 4441 715443384 715443649 2.700000e-108 403.0
50 TraesCS1A01G193000 chr4A 94.400 125 7 0 1377 1501 611579928 611580052 6.360000e-45 193.0
51 TraesCS1A01G193000 chrUn 94.796 269 9 3 4178 4441 271930949 271930681 1.250000e-111 414.0
52 TraesCS1A01G193000 chrUn 93.182 44 3 0 4144 4187 83375435 83375478 1.450000e-06 65.8
53 TraesCS1A01G193000 chr3A 94.776 268 9 3 4185 4447 739760795 739760528 4.480000e-111 412.0
54 TraesCS1A01G193000 chr3A 77.682 466 102 2 4 468 750734017 750733553 3.670000e-72 283.0
55 TraesCS1A01G193000 chr6D 94.677 263 9 3 4183 4440 248316340 248316078 2.700000e-108 403.0
56 TraesCS1A01G193000 chr6D 96.875 128 4 0 3191 3318 95795776 95795903 1.360000e-51 215.0
57 TraesCS1A01G193000 chr6D 88.889 63 4 2 4128 4187 467773454 467773516 2.400000e-09 75.0
58 TraesCS1A01G193000 chr6D 95.238 42 2 0 4146 4187 16701462 16701421 4.020000e-07 67.6
59 TraesCS1A01G193000 chr6D 95.238 42 2 0 4146 4187 53670183 53670142 4.020000e-07 67.6
60 TraesCS1A01G193000 chr6D 91.489 47 3 1 4142 4187 389141608 389141654 5.200000e-06 63.9
61 TraesCS1A01G193000 chr6D 91.111 45 3 1 4145 4188 465968861 465968905 6.730000e-05 60.2
62 TraesCS1A01G193000 chr6D 92.683 41 2 1 4149 4188 241692698 241692658 2.420000e-04 58.4
63 TraesCS1A01G193000 chr6D 89.130 46 4 1 4144 4188 62122924 62122879 8.700000e-04 56.5
64 TraesCS1A01G193000 chr6A 94.677 263 9 3 4187 4444 18540567 18540829 2.700000e-108 403.0
65 TraesCS1A01G193000 chr6A 76.829 246 51 4 201 443 116803472 116803230 3.910000e-27 134.0
66 TraesCS1A01G193000 chr6A 93.617 47 2 1 4141 4187 596589342 596589387 1.120000e-07 69.4
67 TraesCS1A01G193000 chr3B 75.815 736 147 26 6 727 807168952 807169670 1.660000e-90 344.0
68 TraesCS1A01G193000 chr3B 75.773 194 30 15 5036 5229 681956861 681956685 1.440000e-11 82.4
69 TraesCS1A01G193000 chr5D 94.400 125 7 0 1377 1501 558438652 558438776 6.360000e-45 193.0
70 TraesCS1A01G193000 chr5D 95.522 67 2 1 4438 4504 65990526 65990591 8.520000e-19 106.0
71 TraesCS1A01G193000 chr5D 95.349 43 1 1 4145 4187 204081415 204081374 4.020000e-07 67.6
72 TraesCS1A01G193000 chr5D 93.478 46 2 1 4142 4187 416422264 416422308 4.020000e-07 67.6
73 TraesCS1A01G193000 chr7B 91.852 135 11 0 3191 3325 140609531 140609397 8.230000e-44 189.0
74 TraesCS1A01G193000 chr7B 92.157 51 2 2 4139 4187 198885100 198885150 3.110000e-08 71.3
75 TraesCS1A01G193000 chr5A 77.642 246 49 4 201 443 319457072 319457314 1.810000e-30 145.0
76 TraesCS1A01G193000 chr4D 100.000 59 0 0 4438 4496 323929634 323929576 6.590000e-20 110.0
77 TraesCS1A01G193000 chr4D 95.238 42 2 0 4146 4187 175794916 175794957 4.020000e-07 67.6
78 TraesCS1A01G193000 chr2D 95.455 66 3 0 4431 4496 318552929 318552864 8.520000e-19 106.0
79 TraesCS1A01G193000 chr2D 95.455 66 2 1 4438 4503 369542133 369542197 3.070000e-18 104.0
80 TraesCS1A01G193000 chr2D 91.071 56 4 1 4133 4187 367506383 367506438 2.400000e-09 75.0
81 TraesCS1A01G193000 chr7D 97.619 42 1 0 4146 4187 1943697 1943656 8.640000e-09 73.1
82 TraesCS1A01G193000 chr4B 85.507 69 7 2 660 727 659363625 659363691 1.120000e-07 69.4
83 TraesCS1A01G193000 chr4B 93.333 45 3 0 4143 4187 265516009 265515965 4.020000e-07 67.6
84 TraesCS1A01G193000 chr3D 95.349 43 2 0 4145 4187 378106645 378106687 1.120000e-07 69.4
85 TraesCS1A01G193000 chr3D 97.500 40 1 0 4148 4187 528186793 528186754 1.120000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G193000 chr1A 348716417 348722632 6215 True 11479.000000 11479 100.000000 1 6216 1 chr1A.!!$R1 6215
1 TraesCS1A01G193000 chr1D 276530412 276535458 5046 True 1498.600000 3784 93.381000 785 6214 5 chr1D.!!$R4 5429
2 TraesCS1A01G193000 chr1B 375816609 375821684 5075 True 2284.333333 3587 92.200333 800 6210 3 chr1B.!!$R3 5410
3 TraesCS1A01G193000 chr2A 530571992 530572718 726 True 1190.000000 1190 96.159000 1 729 1 chr2A.!!$R1 728
4 TraesCS1A01G193000 chr2A 174020650 174021317 667 False 911.000000 911 91.246000 1 672 1 chr2A.!!$F1 671
5 TraesCS1A01G193000 chr5B 603469173 603469897 724 True 815.000000 815 87.022000 1 727 1 chr5B.!!$R4 726
6 TraesCS1A01G193000 chr7A 642932660 642933380 720 False 562.000000 562 80.848000 1 727 1 chr7A.!!$F1 726
7 TraesCS1A01G193000 chr2B 516282500 516283221 721 False 547.000000 547 80.464000 1 728 1 chr2B.!!$F3 727
8 TraesCS1A01G193000 chr6B 57129078 57129795 717 True 540.000000 540 80.384000 4 727 1 chr6B.!!$R1 723
9 TraesCS1A01G193000 chr3B 807168952 807169670 718 False 344.000000 344 75.815000 6 727 1 chr3B.!!$F1 721

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
781 792 0.179174 GGCAAAAATAGTCGGTGCGG 60.179 55.000 0.00 0.0 36.04 5.69 F
1345 1364 0.106967 GTTTCATCCCCCTCTCCTGC 60.107 60.000 0.00 0.0 0.00 4.85 F
1550 1578 0.731514 CTTGCCTTTGTGATGCGCTG 60.732 55.000 9.73 0.0 0.00 5.18 F
1885 1914 1.098050 CCTGTAAGAAGCATGGTGGC 58.902 55.000 0.00 0.0 34.07 5.01 F
3205 3237 1.216930 TCATGTACTCCCTCCATCCGA 59.783 52.381 0.00 0.0 0.00 4.55 F
4165 4324 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.0 0.00 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1876 1905 0.031994 AGAAAAACACGCCACCATGC 59.968 50.000 0.00 0.00 0.00 4.06 R
2474 2506 2.069273 CAACTACTTTCGGCACCTCTG 58.931 52.381 0.00 0.00 0.00 3.35 R
3408 3564 1.674962 CTTCTGGAAAGCATGCTAGCC 59.325 52.381 23.00 23.98 34.23 3.93 R
3790 3949 0.673985 GCCACTTGAAAGTTGGACCC 59.326 55.000 12.84 0.00 37.08 4.46 R
4484 4643 0.106894 GTGATGATTCCCTCCGTCCC 59.893 60.000 0.00 0.00 0.00 4.46 R
5919 6152 0.755327 GGGATGGGCGGCTGTTTAAT 60.755 55.000 9.56 0.00 0.00 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
177 178 2.743718 CGTCACCCCTGAAGTGCT 59.256 61.111 0.00 0.00 35.14 4.40
255 256 0.735471 GAGATTTTCTTCCAGCGGCC 59.265 55.000 0.00 0.00 0.00 6.13
321 322 7.986076 ATTCCGGAAGAACCAGTATTGACTGA 61.986 42.308 23.47 0.00 45.95 3.41
476 477 1.472662 CGACCTCCTGTGAACCTGGT 61.473 60.000 0.00 0.00 33.97 4.00
627 636 3.546543 CCGGCCGCCCTAGATCAA 61.547 66.667 22.85 0.00 0.00 2.57
639 648 1.406898 CTAGATCAAGAGCAGGCGTCA 59.593 52.381 0.00 0.00 0.00 4.35
676 687 0.780637 TAGGGGAGGCAGATCTCGAT 59.219 55.000 0.00 0.00 34.74 3.59
687 698 3.490793 ATCTCGATGGCGGCGACTG 62.491 63.158 16.45 3.73 38.28 3.51
732 743 1.682323 CCTAACTAGAGGGAAGCGACC 59.318 57.143 0.00 0.00 32.39 4.79
733 744 2.657143 CTAACTAGAGGGAAGCGACCT 58.343 52.381 0.00 0.00 42.18 3.85
734 745 1.939980 AACTAGAGGGAAGCGACCTT 58.060 50.000 0.00 0.00 38.79 3.50
735 746 1.476477 ACTAGAGGGAAGCGACCTTC 58.524 55.000 0.00 6.30 45.41 3.46
743 754 2.902065 GAAGCGACCTTCATTGGTTC 57.098 50.000 0.00 0.00 45.44 3.62
744 755 1.128692 GAAGCGACCTTCATTGGTTCG 59.871 52.381 0.00 0.00 45.44 3.95
745 756 1.134694 GCGACCTTCATTGGTTCGC 59.865 57.895 11.99 11.99 43.37 4.70
746 757 1.419922 CGACCTTCATTGGTTCGCG 59.580 57.895 0.00 0.00 41.00 5.87
747 758 1.134694 GACCTTCATTGGTTCGCGC 59.865 57.895 0.00 0.00 41.00 6.86
748 759 1.573829 GACCTTCATTGGTTCGCGCA 61.574 55.000 8.75 0.00 41.00 6.09
749 760 1.154225 CCTTCATTGGTTCGCGCAC 60.154 57.895 8.75 0.00 0.00 5.34
750 761 1.509787 CTTCATTGGTTCGCGCACG 60.510 57.895 8.75 0.00 42.01 5.34
751 762 2.832818 CTTCATTGGTTCGCGCACGG 62.833 60.000 8.75 0.00 40.63 4.94
764 775 4.792106 CACGGCTTGCTTAATGGC 57.208 55.556 0.00 0.00 0.00 4.40
765 776 1.882311 CACGGCTTGCTTAATGGCA 59.118 52.632 0.00 0.00 40.74 4.92
776 787 4.992688 TGCTTAATGGCAAAAATAGTCGG 58.007 39.130 0.00 0.00 39.43 4.79
777 788 4.461081 TGCTTAATGGCAAAAATAGTCGGT 59.539 37.500 0.00 0.00 39.43 4.69
778 789 4.798387 GCTTAATGGCAAAAATAGTCGGTG 59.202 41.667 0.00 0.00 0.00 4.94
779 790 2.939460 ATGGCAAAAATAGTCGGTGC 57.061 45.000 0.00 0.00 34.42 5.01
780 791 0.519519 TGGCAAAAATAGTCGGTGCG 59.480 50.000 0.00 0.00 36.04 5.34
781 792 0.179174 GGCAAAAATAGTCGGTGCGG 60.179 55.000 0.00 0.00 36.04 5.69
782 793 0.796870 GCAAAAATAGTCGGTGCGGC 60.797 55.000 0.00 0.00 0.00 6.53
783 794 0.179174 CAAAAATAGTCGGTGCGGCC 60.179 55.000 0.00 0.00 28.67 6.13
796 807 4.093952 CGGCCTGAAGCTGCAACG 62.094 66.667 0.00 0.00 42.11 4.10
798 809 3.741476 GCCTGAAGCTGCAACGGG 61.741 66.667 16.03 16.03 38.99 5.28
845 857 3.008485 CCACTCTGGGCTCTTATTATCCC 59.992 52.174 0.00 0.00 39.22 3.85
846 858 3.906846 CACTCTGGGCTCTTATTATCCCT 59.093 47.826 0.00 0.00 39.49 4.20
869 881 0.531657 TTGATCATTGCGGGCCAAAG 59.468 50.000 4.39 0.00 36.92 2.77
884 896 2.288825 GCCAAAGTTTTCTTACTGGGCC 60.289 50.000 0.00 0.00 40.68 5.80
885 897 2.962421 CCAAAGTTTTCTTACTGGGCCA 59.038 45.455 5.85 5.85 39.48 5.36
888 900 3.595190 AGTTTTCTTACTGGGCCAAGT 57.405 42.857 19.14 19.14 0.00 3.16
953 965 2.343758 CACACGTGGAGGTGGAGG 59.656 66.667 21.57 0.00 42.23 4.30
954 966 2.122989 ACACGTGGAGGTGGAGGT 60.123 61.111 21.57 0.00 42.23 3.85
955 967 2.343758 CACGTGGAGGTGGAGGTG 59.656 66.667 7.95 0.00 34.27 4.00
956 968 2.923035 ACGTGGAGGTGGAGGTGG 60.923 66.667 0.00 0.00 0.00 4.61
957 969 2.603473 CGTGGAGGTGGAGGTGGA 60.603 66.667 0.00 0.00 0.00 4.02
958 970 2.650116 CGTGGAGGTGGAGGTGGAG 61.650 68.421 0.00 0.00 0.00 3.86
1000 1012 2.176273 CATTTCCTCGCCTCGCCTG 61.176 63.158 0.00 0.00 0.00 4.85
1265 1284 2.464459 CCTCCGTTTGCTCCGATGC 61.464 63.158 0.00 0.00 0.00 3.91
1270 1289 1.297893 GTTTGCTCCGATGCGATGC 60.298 57.895 0.00 0.00 35.36 3.91
1305 1324 1.675641 CTTTGTTGCCCTCCCTCCG 60.676 63.158 0.00 0.00 0.00 4.63
1335 1354 0.463833 ATTCCGCCTCGTTTCATCCC 60.464 55.000 0.00 0.00 0.00 3.85
1336 1355 2.513897 CCGCCTCGTTTCATCCCC 60.514 66.667 0.00 0.00 0.00 4.81
1345 1364 0.106967 GTTTCATCCCCCTCTCCTGC 60.107 60.000 0.00 0.00 0.00 4.85
1366 1385 0.839946 CCCCTCCCTCCTTATGTGTG 59.160 60.000 0.00 0.00 0.00 3.82
1549 1577 1.582968 CTTGCCTTTGTGATGCGCT 59.417 52.632 9.73 0.00 0.00 5.92
1550 1578 0.731514 CTTGCCTTTGTGATGCGCTG 60.732 55.000 9.73 0.00 0.00 5.18
1551 1579 2.505557 GCCTTTGTGATGCGCTGC 60.506 61.111 9.73 0.13 0.00 5.25
1566 1594 1.457303 CGCTGCGCTTCCAGAATATAC 59.543 52.381 9.88 0.00 34.77 1.47
1633 1662 1.378119 CCCGCCTGGTTAGGGTTTC 60.378 63.158 13.54 0.00 44.75 2.78
1719 1748 1.467734 GTGAGAGAATGTGCAGGCTTG 59.532 52.381 0.00 0.00 0.00 4.01
1763 1792 2.484264 GCTGTAATTTTGACGCTGGACT 59.516 45.455 0.00 0.00 0.00 3.85
1876 1905 5.181748 AGCTTCAGCATAACCTGTAAGAAG 58.818 41.667 0.75 0.00 45.16 2.85
1883 1912 4.201950 GCATAACCTGTAAGAAGCATGGTG 60.202 45.833 0.00 0.00 34.07 4.17
1885 1914 1.098050 CCTGTAAGAAGCATGGTGGC 58.902 55.000 0.00 0.00 34.07 5.01
1946 1977 3.921119 TTGATGCAACATGACACTTCC 57.079 42.857 0.00 0.00 0.00 3.46
1973 2004 4.085357 TGTTGTATGCTCTGTCCAAGTT 57.915 40.909 0.00 0.00 0.00 2.66
1976 2007 1.740025 GTATGCTCTGTCCAAGTTGGC 59.260 52.381 17.68 12.59 37.47 4.52
2018 2049 7.500559 GGAATGTTTATCAGATAGGTCTTGCTT 59.499 37.037 0.00 0.00 30.42 3.91
2091 2122 7.880195 ACCTAGCATATTGTCACTATGGAAATC 59.120 37.037 11.07 0.00 0.00 2.17
2145 2177 7.315142 TGAAAGCACATTGACTGGATTTATTC 58.685 34.615 0.00 0.00 0.00 1.75
2146 2178 5.490139 AGCACATTGACTGGATTTATTCG 57.510 39.130 0.00 0.00 0.00 3.34
2157 2189 6.411376 ACTGGATTTATTCGTGGTGACATTA 58.589 36.000 0.00 0.00 46.14 1.90
2310 2342 4.082125 GTTGGACTGATGGTGGAAAGATT 58.918 43.478 0.00 0.00 0.00 2.40
2474 2506 3.681417 GCATTTCCTGATTTCAAACTGGC 59.319 43.478 0.00 0.00 0.00 4.85
2496 2528 2.895404 AGAGGTGCCGAAAGTAGTTGTA 59.105 45.455 0.00 0.00 0.00 2.41
3149 3181 6.593382 GCATCCAAAATGCAGGTAATGTTTAA 59.407 34.615 5.18 0.00 44.00 1.52
3199 3231 4.963318 TGATGAATCATGTACTCCCTCC 57.037 45.455 0.00 0.00 0.00 4.30
3200 3232 4.297768 TGATGAATCATGTACTCCCTCCA 58.702 43.478 0.00 0.00 0.00 3.86
3202 3234 4.963318 TGAATCATGTACTCCCTCCATC 57.037 45.455 0.00 0.00 0.00 3.51
3204 3236 1.704641 TCATGTACTCCCTCCATCCG 58.295 55.000 0.00 0.00 0.00 4.18
3205 3237 1.216930 TCATGTACTCCCTCCATCCGA 59.783 52.381 0.00 0.00 0.00 4.55
3212 3244 3.385115 ACTCCCTCCATCCGAAAATACT 58.615 45.455 0.00 0.00 0.00 2.12
3216 3248 4.018779 TCCCTCCATCCGAAAATACTTGTT 60.019 41.667 0.00 0.00 0.00 2.83
3217 3249 5.190132 TCCCTCCATCCGAAAATACTTGTTA 59.810 40.000 0.00 0.00 0.00 2.41
3218 3250 6.062095 CCCTCCATCCGAAAATACTTGTTAT 58.938 40.000 0.00 0.00 0.00 1.89
3219 3251 6.204882 CCCTCCATCCGAAAATACTTGTTATC 59.795 42.308 0.00 0.00 0.00 1.75
3220 3252 6.765989 CCTCCATCCGAAAATACTTGTTATCA 59.234 38.462 0.00 0.00 0.00 2.15
3221 3253 7.282224 CCTCCATCCGAAAATACTTGTTATCAA 59.718 37.037 0.00 0.00 0.00 2.57
3223 3255 9.015367 TCCATCCGAAAATACTTGTTATCAAAA 57.985 29.630 0.00 0.00 32.87 2.44
3224 3256 9.801873 CCATCCGAAAATACTTGTTATCAAAAT 57.198 29.630 0.00 0.00 32.87 1.82
3227 3259 9.015367 TCCGAAAATACTTGTTATCAAAATGGA 57.985 29.630 0.00 0.00 32.87 3.41
3237 3269 9.942850 CTTGTTATCAAAATGGATAAAAAGGGT 57.057 29.630 14.07 0.00 44.29 4.34
3239 3271 9.717942 TGTTATCAAAATGGATAAAAAGGGTTG 57.282 29.630 0.00 0.00 40.41 3.77
3240 3272 9.719355 GTTATCAAAATGGATAAAAAGGGTTGT 57.281 29.630 0.00 0.00 40.41 3.32
3244 3276 9.320295 TCAAAATGGATAAAAAGGGTTGTATCT 57.680 29.630 0.00 0.00 35.17 1.98
3250 3282 9.816787 TGGATAAAAAGGGTTGTATCTAAAACT 57.183 29.630 0.00 0.00 35.17 2.66
3281 3313 8.658840 AGGTCTAGATACATCTCCTTTTATCC 57.341 38.462 0.00 0.00 38.32 2.59
3282 3314 8.235230 AGGTCTAGATACATCTCCTTTTATCCA 58.765 37.037 0.00 0.00 38.32 3.41
3283 3315 9.041354 GGTCTAGATACATCTCCTTTTATCCAT 57.959 37.037 0.00 0.00 38.32 3.41
3291 3323 8.827832 ACATCTCCTTTTATCCATTTTGATGA 57.172 30.769 0.00 0.00 33.85 2.92
3292 3324 8.689972 ACATCTCCTTTTATCCATTTTGATGAC 58.310 33.333 0.00 0.00 33.85 3.06
3293 3325 8.689061 CATCTCCTTTTATCCATTTTGATGACA 58.311 33.333 0.00 0.00 32.05 3.58
3294 3326 8.648698 TCTCCTTTTATCCATTTTGATGACAA 57.351 30.769 0.00 0.00 0.00 3.18
3295 3327 8.742777 TCTCCTTTTATCCATTTTGATGACAAG 58.257 33.333 0.00 0.00 37.32 3.16
3296 3328 8.421249 TCCTTTTATCCATTTTGATGACAAGT 57.579 30.769 0.00 0.00 37.32 3.16
3297 3329 9.527157 TCCTTTTATCCATTTTGATGACAAGTA 57.473 29.630 0.00 0.00 37.32 2.24
3303 3335 7.773489 TCCATTTTGATGACAAGTATTTCCA 57.227 32.000 0.00 0.00 37.32 3.53
3304 3336 7.829725 TCCATTTTGATGACAAGTATTTCCAG 58.170 34.615 0.00 0.00 37.32 3.86
3305 3337 7.669304 TCCATTTTGATGACAAGTATTTCCAGA 59.331 33.333 0.00 0.00 37.32 3.86
3306 3338 7.756722 CCATTTTGATGACAAGTATTTCCAGAC 59.243 37.037 0.00 0.00 37.32 3.51
3307 3339 6.480524 TTTGATGACAAGTATTTCCAGACG 57.519 37.500 0.00 0.00 37.32 4.18
3308 3340 4.503910 TGATGACAAGTATTTCCAGACGG 58.496 43.478 0.00 0.00 0.00 4.79
3379 3535 7.008941 AGTTCAGTTCTAGTCTTAGGTAACCA 58.991 38.462 0.00 0.00 37.17 3.67
3408 3564 2.094803 TGTGGCGGTATGCTTTGAATTG 60.095 45.455 0.00 0.00 45.43 2.32
3448 3604 4.510038 AGCACAATTGACTTGGTTCATC 57.490 40.909 13.59 0.00 39.30 2.92
3456 3612 5.694231 TTGACTTGGTTCATCTTGATGTG 57.306 39.130 10.01 0.00 0.00 3.21
3484 3642 3.491342 TGGTTAACAGCATTACAAGGCA 58.509 40.909 8.10 0.00 38.35 4.75
3485 3643 4.085733 TGGTTAACAGCATTACAAGGCAT 58.914 39.130 8.10 0.00 38.35 4.40
3486 3644 4.526262 TGGTTAACAGCATTACAAGGCATT 59.474 37.500 8.10 0.00 38.35 3.56
3487 3645 5.011533 TGGTTAACAGCATTACAAGGCATTT 59.988 36.000 8.10 0.00 38.35 2.32
3488 3646 5.576774 GGTTAACAGCATTACAAGGCATTTC 59.423 40.000 8.10 0.00 38.35 2.17
3489 3647 3.874392 ACAGCATTACAAGGCATTTCC 57.126 42.857 1.12 0.00 38.35 3.13
3490 3648 3.164268 ACAGCATTACAAGGCATTTCCA 58.836 40.909 1.12 0.00 38.35 3.53
3491 3649 3.194116 ACAGCATTACAAGGCATTTCCAG 59.806 43.478 1.12 0.00 38.35 3.86
3492 3650 3.444742 CAGCATTACAAGGCATTTCCAGA 59.555 43.478 1.12 0.00 38.35 3.86
3493 3651 4.082081 CAGCATTACAAGGCATTTCCAGAA 60.082 41.667 1.12 0.00 38.35 3.02
3494 3652 4.159135 AGCATTACAAGGCATTTCCAGAAG 59.841 41.667 1.12 0.00 38.35 2.85
3495 3653 4.427312 CATTACAAGGCATTTCCAGAAGC 58.573 43.478 0.00 0.00 37.29 3.86
3496 3654 1.999648 ACAAGGCATTTCCAGAAGCA 58.000 45.000 0.00 0.00 37.29 3.91
3497 3655 1.615392 ACAAGGCATTTCCAGAAGCAC 59.385 47.619 0.00 0.00 37.29 4.40
3498 3656 1.614903 CAAGGCATTTCCAGAAGCACA 59.385 47.619 0.00 0.00 37.29 4.57
3499 3657 1.999648 AGGCATTTCCAGAAGCACAA 58.000 45.000 0.00 0.00 37.29 3.33
3500 3658 2.532843 AGGCATTTCCAGAAGCACAAT 58.467 42.857 0.00 0.00 37.29 2.71
3501 3659 2.901839 AGGCATTTCCAGAAGCACAATT 59.098 40.909 0.00 0.00 37.29 2.32
3502 3660 2.997986 GGCATTTCCAGAAGCACAATTG 59.002 45.455 3.24 3.24 34.01 2.32
3503 3661 3.555586 GGCATTTCCAGAAGCACAATTGT 60.556 43.478 4.92 4.92 34.01 2.71
3504 3662 3.676646 GCATTTCCAGAAGCACAATTGTC 59.323 43.478 8.48 4.08 0.00 3.18
3561 3719 8.871862 CACTGTGTTTCATCATTTTGAGAAAAA 58.128 29.630 0.00 0.00 33.47 1.94
3644 3802 6.073058 TGCTGTAATTGTGCTTTAGTTCTGAG 60.073 38.462 0.00 0.00 0.00 3.35
3656 3815 6.360370 TTTAGTTCTGAGTGGCTTGTCTAT 57.640 37.500 0.00 0.00 0.00 1.98
3663 3822 6.349300 TCTGAGTGGCTTGTCTATAAATTCC 58.651 40.000 0.00 0.00 0.00 3.01
3664 3823 5.437060 TGAGTGGCTTGTCTATAAATTCCC 58.563 41.667 0.00 0.00 0.00 3.97
3750 3909 9.918630 CTCTGGAAATGAGAAAATTGTTTACAT 57.081 29.630 0.00 0.00 33.68 2.29
3790 3949 9.612620 GACTTGTTTTACATATTCTTGTCTTGG 57.387 33.333 0.00 0.00 0.00 3.61
3797 3956 4.044065 ACATATTCTTGTCTTGGGGTCCAA 59.956 41.667 0.00 0.00 41.69 3.53
3857 4016 1.135333 CTCCAGGTCGAGGAAAGTAGC 59.865 57.143 0.00 0.00 34.08 3.58
4078 4237 1.758936 GGCCTATACGCCCTTGTTTT 58.241 50.000 0.00 0.00 43.66 2.43
4157 4316 9.761504 GATTTTTACAAGTATAGTACTCCCTCC 57.238 37.037 0.00 0.00 38.26 4.30
4159 4318 4.516652 ACAAGTATAGTACTCCCTCCGT 57.483 45.455 0.00 0.00 38.26 4.69
4160 4319 4.459330 ACAAGTATAGTACTCCCTCCGTC 58.541 47.826 0.00 0.00 38.26 4.79
4161 4320 3.786368 AGTATAGTACTCCCTCCGTCC 57.214 52.381 0.00 0.00 32.47 4.79
4162 4321 2.374839 AGTATAGTACTCCCTCCGTCCC 59.625 54.545 0.00 0.00 32.47 4.46
4163 4322 1.229131 ATAGTACTCCCTCCGTCCCA 58.771 55.000 0.00 0.00 0.00 4.37
4164 4323 1.002069 TAGTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
4165 4324 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
4166 4325 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
4167 4326 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
4168 4327 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
4169 4328 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
4170 4329 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
4171 4330 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
4172 4331 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
4173 4332 1.743394 CCTCCGTCCCAAAATAAGTGC 59.257 52.381 0.00 0.00 0.00 4.40
4174 4333 1.743394 CTCCGTCCCAAAATAAGTGCC 59.257 52.381 0.00 0.00 0.00 5.01
4175 4334 1.353022 TCCGTCCCAAAATAAGTGCCT 59.647 47.619 0.00 0.00 0.00 4.75
4176 4335 1.743394 CCGTCCCAAAATAAGTGCCTC 59.257 52.381 0.00 0.00 0.00 4.70
4177 4336 2.432444 CGTCCCAAAATAAGTGCCTCA 58.568 47.619 0.00 0.00 0.00 3.86
4178 4337 2.817258 CGTCCCAAAATAAGTGCCTCAA 59.183 45.455 0.00 0.00 0.00 3.02
4179 4338 3.443681 CGTCCCAAAATAAGTGCCTCAAT 59.556 43.478 0.00 0.00 0.00 2.57
4180 4339 4.082245 CGTCCCAAAATAAGTGCCTCAATT 60.082 41.667 0.00 0.00 0.00 2.32
4181 4340 5.566627 CGTCCCAAAATAAGTGCCTCAATTT 60.567 40.000 0.00 0.00 0.00 1.82
4182 4341 6.230472 GTCCCAAAATAAGTGCCTCAATTTT 58.770 36.000 0.00 0.00 33.07 1.82
4183 4342 6.147656 GTCCCAAAATAAGTGCCTCAATTTTG 59.852 38.462 17.51 17.51 43.77 2.44
4184 4343 5.997129 CCCAAAATAAGTGCCTCAATTTTGT 59.003 36.000 19.85 1.88 43.14 2.83
4185 4344 7.015682 TCCCAAAATAAGTGCCTCAATTTTGTA 59.984 33.333 19.85 12.68 43.14 2.41
4186 4345 7.117667 CCCAAAATAAGTGCCTCAATTTTGTAC 59.882 37.037 19.85 0.00 43.14 2.90
4187 4346 7.655328 CCAAAATAAGTGCCTCAATTTTGTACA 59.345 33.333 19.85 0.00 43.14 2.90
4188 4347 8.487176 CAAAATAAGTGCCTCAATTTTGTACAC 58.513 33.333 16.90 0.00 41.26 2.90
4189 4348 4.584327 AAGTGCCTCAATTTTGTACACC 57.416 40.909 0.00 0.00 31.59 4.16
4190 4349 2.890945 AGTGCCTCAATTTTGTACACCC 59.109 45.455 0.00 0.00 31.59 4.61
4191 4350 2.890945 GTGCCTCAATTTTGTACACCCT 59.109 45.455 0.00 0.00 0.00 4.34
4192 4351 3.057526 GTGCCTCAATTTTGTACACCCTC 60.058 47.826 0.00 0.00 0.00 4.30
4193 4352 2.492088 GCCTCAATTTTGTACACCCTCC 59.508 50.000 0.00 0.00 0.00 4.30
4194 4353 2.747446 CCTCAATTTTGTACACCCTCCG 59.253 50.000 0.00 0.00 0.00 4.63
4195 4354 3.408634 CTCAATTTTGTACACCCTCCGT 58.591 45.455 0.00 0.00 0.00 4.69
4196 4355 3.818773 CTCAATTTTGTACACCCTCCGTT 59.181 43.478 0.00 0.00 0.00 4.44
4197 4356 4.208746 TCAATTTTGTACACCCTCCGTTT 58.791 39.130 0.00 0.00 0.00 3.60
4198 4357 4.645588 TCAATTTTGTACACCCTCCGTTTT 59.354 37.500 0.00 0.00 0.00 2.43
4199 4358 5.127356 TCAATTTTGTACACCCTCCGTTTTT 59.873 36.000 0.00 0.00 0.00 1.94
4200 4359 6.320672 TCAATTTTGTACACCCTCCGTTTTTA 59.679 34.615 0.00 0.00 0.00 1.52
4201 4360 6.904463 ATTTTGTACACCCTCCGTTTTTAT 57.096 33.333 0.00 0.00 0.00 1.40
4202 4361 6.712179 TTTTGTACACCCTCCGTTTTTATT 57.288 33.333 0.00 0.00 0.00 1.40
4203 4362 6.712179 TTTGTACACCCTCCGTTTTTATTT 57.288 33.333 0.00 0.00 0.00 1.40
4204 4363 7.814264 TTTGTACACCCTCCGTTTTTATTTA 57.186 32.000 0.00 0.00 0.00 1.40
4205 4364 7.437793 TTGTACACCCTCCGTTTTTATTTAG 57.562 36.000 0.00 0.00 0.00 1.85
4206 4365 6.532826 TGTACACCCTCCGTTTTTATTTAGT 58.467 36.000 0.00 0.00 0.00 2.24
4207 4366 6.650390 TGTACACCCTCCGTTTTTATTTAGTC 59.350 38.462 0.00 0.00 0.00 2.59
4208 4367 5.872963 ACACCCTCCGTTTTTATTTAGTCT 58.127 37.500 0.00 0.00 0.00 3.24
4209 4368 5.704053 ACACCCTCCGTTTTTATTTAGTCTG 59.296 40.000 0.00 0.00 0.00 3.51
4210 4369 4.698780 ACCCTCCGTTTTTATTTAGTCTGC 59.301 41.667 0.00 0.00 0.00 4.26
4211 4370 4.698304 CCCTCCGTTTTTATTTAGTCTGCA 59.302 41.667 0.00 0.00 0.00 4.41
4212 4371 5.357032 CCCTCCGTTTTTATTTAGTCTGCAT 59.643 40.000 0.00 0.00 0.00 3.96
4213 4372 6.540914 CCCTCCGTTTTTATTTAGTCTGCATA 59.459 38.462 0.00 0.00 0.00 3.14
4214 4373 7.228706 CCCTCCGTTTTTATTTAGTCTGCATAT 59.771 37.037 0.00 0.00 0.00 1.78
4215 4374 8.621286 CCTCCGTTTTTATTTAGTCTGCATATT 58.379 33.333 0.00 0.00 0.00 1.28
4218 4377 9.878599 CCGTTTTTATTTAGTCTGCATATTAGG 57.121 33.333 0.00 0.00 0.00 2.69
4225 4384 7.859325 TTTAGTCTGCATATTAGGTTTGACC 57.141 36.000 0.00 0.00 38.99 4.02
4226 4385 4.442706 AGTCTGCATATTAGGTTTGACCG 58.557 43.478 0.00 0.00 44.90 4.79
4227 4386 4.161565 AGTCTGCATATTAGGTTTGACCGA 59.838 41.667 0.00 0.00 44.90 4.69
4228 4387 4.873827 GTCTGCATATTAGGTTTGACCGAA 59.126 41.667 0.00 0.00 44.90 4.30
4229 4388 5.006746 GTCTGCATATTAGGTTTGACCGAAG 59.993 44.000 0.00 0.00 44.90 3.79
4230 4389 4.839121 TGCATATTAGGTTTGACCGAAGT 58.161 39.130 0.00 0.00 44.90 3.01
4231 4390 4.873827 TGCATATTAGGTTTGACCGAAGTC 59.126 41.667 0.00 0.00 44.90 3.01
4317 4476 9.679661 ATGGTGTGTTAGTACATTCAATAATGA 57.320 29.630 5.18 0.00 44.50 2.57
4393 4552 8.276252 ACTTAGTCAAAGTTTACAAAGCTTGA 57.724 30.769 0.00 0.00 46.61 3.02
4394 4553 8.182227 ACTTAGTCAAAGTTTACAAAGCTTGAC 58.818 33.333 0.00 14.97 46.61 3.18
4395 4554 6.759497 AGTCAAAGTTTACAAAGCTTGACT 57.241 33.333 17.55 17.55 41.47 3.41
4396 4555 7.158099 AGTCAAAGTTTACAAAGCTTGACTT 57.842 32.000 17.55 3.36 42.47 3.01
4407 4566 5.405935 AAAGCTTGACTTTGACCAAAACT 57.594 34.783 0.00 0.00 47.00 2.66
4408 4567 6.524101 AAAGCTTGACTTTGACCAAAACTA 57.476 33.333 0.00 0.00 47.00 2.24
4409 4568 6.524101 AAGCTTGACTTTGACCAAAACTAA 57.476 33.333 0.00 0.00 33.71 2.24
4410 4569 6.715347 AGCTTGACTTTGACCAAAACTAAT 57.285 33.333 0.00 0.00 0.00 1.73
4411 4570 7.817418 AGCTTGACTTTGACCAAAACTAATA 57.183 32.000 0.00 0.00 0.00 0.98
4412 4571 8.409358 AGCTTGACTTTGACCAAAACTAATAT 57.591 30.769 0.00 0.00 0.00 1.28
4413 4572 8.299570 AGCTTGACTTTGACCAAAACTAATATG 58.700 33.333 0.00 0.00 0.00 1.78
4414 4573 7.062255 GCTTGACTTTGACCAAAACTAATATGC 59.938 37.037 0.00 0.00 0.00 3.14
4415 4574 6.607689 TGACTTTGACCAAAACTAATATGCG 58.392 36.000 0.00 0.00 0.00 4.73
4416 4575 5.949735 ACTTTGACCAAAACTAATATGCGG 58.050 37.500 0.00 0.00 0.00 5.69
4417 4576 5.708230 ACTTTGACCAAAACTAATATGCGGA 59.292 36.000 0.00 0.00 0.00 5.54
4418 4577 5.554822 TTGACCAAAACTAATATGCGGAC 57.445 39.130 0.00 0.00 0.00 4.79
4419 4578 4.839121 TGACCAAAACTAATATGCGGACT 58.161 39.130 0.00 0.00 0.00 3.85
4420 4579 5.979993 TGACCAAAACTAATATGCGGACTA 58.020 37.500 0.00 0.00 0.00 2.59
4421 4580 6.408035 TGACCAAAACTAATATGCGGACTAA 58.592 36.000 0.00 0.00 0.00 2.24
4422 4581 6.879993 TGACCAAAACTAATATGCGGACTAAA 59.120 34.615 0.00 0.00 0.00 1.85
4423 4582 7.554835 TGACCAAAACTAATATGCGGACTAAAT 59.445 33.333 0.00 0.00 0.00 1.40
4424 4583 8.967664 ACCAAAACTAATATGCGGACTAAATA 57.032 30.769 0.00 0.00 0.00 1.40
4425 4584 9.398538 ACCAAAACTAATATGCGGACTAAATAA 57.601 29.630 0.00 0.00 0.00 1.40
4430 4589 9.925268 AACTAATATGCGGACTAAATAAAAACG 57.075 29.630 0.00 0.00 0.00 3.60
4431 4590 8.553696 ACTAATATGCGGACTAAATAAAAACGG 58.446 33.333 0.00 0.00 0.00 4.44
4432 4591 7.556733 AATATGCGGACTAAATAAAAACGGA 57.443 32.000 0.00 0.00 0.00 4.69
4433 4592 4.932268 TGCGGACTAAATAAAAACGGAG 57.068 40.909 0.00 0.00 0.00 4.63
4434 4593 3.685756 TGCGGACTAAATAAAAACGGAGG 59.314 43.478 0.00 0.00 0.00 4.30
4435 4594 3.064408 GCGGACTAAATAAAAACGGAGGG 59.936 47.826 0.00 0.00 0.00 4.30
4436 4595 4.506758 CGGACTAAATAAAAACGGAGGGA 58.493 43.478 0.00 0.00 0.00 4.20
4437 4596 4.569564 CGGACTAAATAAAAACGGAGGGAG 59.430 45.833 0.00 0.00 0.00 4.30
4438 4597 5.494724 GGACTAAATAAAAACGGAGGGAGT 58.505 41.667 0.00 0.00 0.00 3.85
4439 4598 6.627953 CGGACTAAATAAAAACGGAGGGAGTA 60.628 42.308 0.00 0.00 0.00 2.59
4440 4599 6.536582 GGACTAAATAAAAACGGAGGGAGTAC 59.463 42.308 0.00 0.00 0.00 2.73
4441 4600 7.250032 ACTAAATAAAAACGGAGGGAGTACT 57.750 36.000 0.00 0.00 0.00 2.73
4442 4601 8.366359 ACTAAATAAAAACGGAGGGAGTACTA 57.634 34.615 0.00 0.00 0.00 1.82
4443 4602 8.815912 ACTAAATAAAAACGGAGGGAGTACTAA 58.184 33.333 0.00 0.00 0.00 2.24
4444 4603 7.912056 AAATAAAAACGGAGGGAGTACTAAC 57.088 36.000 0.00 0.00 0.00 2.34
4445 4604 6.864151 ATAAAAACGGAGGGAGTACTAACT 57.136 37.500 0.00 0.00 39.21 2.24
4446 4605 5.557576 AAAAACGGAGGGAGTACTAACTT 57.442 39.130 0.00 0.00 35.56 2.66
4447 4606 5.557576 AAAACGGAGGGAGTACTAACTTT 57.442 39.130 0.00 0.00 35.56 2.66
4448 4607 6.670695 AAAACGGAGGGAGTACTAACTTTA 57.329 37.500 0.00 0.00 35.56 1.85
4449 4608 5.911378 AACGGAGGGAGTACTAACTTTAG 57.089 43.478 0.00 0.00 35.56 1.85
4450 4609 4.928263 ACGGAGGGAGTACTAACTTTAGT 58.072 43.478 6.85 6.85 45.39 2.24
4451 4610 6.067217 ACGGAGGGAGTACTAACTTTAGTA 57.933 41.667 0.00 4.98 43.36 1.82
4474 4633 6.846325 ACAAAGTTGTACTAAGCTTGAGAC 57.154 37.500 9.86 4.39 40.16 3.36
4475 4634 6.346096 ACAAAGTTGTACTAAGCTTGAGACA 58.654 36.000 9.86 7.12 40.16 3.41
4476 4635 6.258068 ACAAAGTTGTACTAAGCTTGAGACAC 59.742 38.462 9.86 7.18 40.16 3.67
4477 4636 5.793030 AGTTGTACTAAGCTTGAGACACT 57.207 39.130 9.86 7.29 0.00 3.55
4478 4637 6.163135 AGTTGTACTAAGCTTGAGACACTT 57.837 37.500 9.86 0.00 0.00 3.16
4479 4638 7.286215 AGTTGTACTAAGCTTGAGACACTTA 57.714 36.000 9.86 0.00 0.00 2.24
4480 4639 7.897864 AGTTGTACTAAGCTTGAGACACTTAT 58.102 34.615 9.86 0.00 0.00 1.73
4481 4640 8.368668 AGTTGTACTAAGCTTGAGACACTTATT 58.631 33.333 9.86 0.00 0.00 1.40
4482 4641 8.989980 GTTGTACTAAGCTTGAGACACTTATTT 58.010 33.333 9.86 0.00 0.00 1.40
4483 4642 9.555727 TTGTACTAAGCTTGAGACACTTATTTT 57.444 29.630 9.86 0.00 0.00 1.82
4484 4643 8.988934 TGTACTAAGCTTGAGACACTTATTTTG 58.011 33.333 9.86 0.00 0.00 2.44
4485 4644 7.440523 ACTAAGCTTGAGACACTTATTTTGG 57.559 36.000 9.86 0.00 0.00 3.28
4486 4645 5.712152 AAGCTTGAGACACTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
4487 4646 4.985538 AGCTTGAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
4488 4647 4.762251 AGCTTGAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
4489 4648 4.378459 GCTTGAGACACTTATTTTGGGACG 60.378 45.833 0.00 0.00 0.00 4.79
4490 4649 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
4491 4650 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
4492 4651 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
4493 4652 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
4494 4653 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
4495 4654 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
4496 4655 2.645797 ACTTATTTTGGGACGGAGGGAA 59.354 45.455 0.00 0.00 0.00 3.97
4497 4656 3.268595 ACTTATTTTGGGACGGAGGGAAT 59.731 43.478 0.00 0.00 0.00 3.01
4543 4706 4.042062 TGATTTCCAACTCTCCATCACAGT 59.958 41.667 0.00 0.00 0.00 3.55
4554 4717 3.340928 TCCATCACAGTTGATCAGCTTG 58.659 45.455 9.66 11.35 40.79 4.01
4566 4732 1.276622 TCAGCTTGACCCTAACTCCC 58.723 55.000 0.00 0.00 0.00 4.30
4616 4782 2.812011 ACGGCTTTGCTAGTTTACCTTG 59.188 45.455 0.00 0.00 0.00 3.61
4667 4833 3.510753 TGTGTAATACGTTGCTGTAGGGA 59.489 43.478 0.00 0.00 0.00 4.20
4724 4890 4.096732 ACAAGCGAACAATTCTAATGCC 57.903 40.909 0.00 0.00 0.00 4.40
4794 4960 0.533755 GGCGAGGCATCAGCATACTT 60.534 55.000 14.93 0.00 44.61 2.24
4975 5141 5.928839 TGAGCTGAATTTACAGTCAAGACTC 59.071 40.000 0.00 0.00 40.20 3.36
4976 5142 6.107901 AGCTGAATTTACAGTCAAGACTCT 57.892 37.500 0.00 0.00 40.20 3.24
4985 5151 3.194542 ACAGTCAAGACTCTATCACAGGC 59.805 47.826 0.00 0.00 40.20 4.85
5015 5181 1.757118 TCCGCCTCTCCTGATTGTTAG 59.243 52.381 0.00 0.00 0.00 2.34
5016 5182 1.757118 CCGCCTCTCCTGATTGTTAGA 59.243 52.381 0.00 0.00 0.00 2.10
5103 5272 7.010645 GTCGGTAGAGAAAGAATGAGGATTTTC 59.989 40.741 0.00 0.00 0.00 2.29
5184 5353 3.131400 GGGTGTTGTGCTACCAAAGAAAA 59.869 43.478 0.00 0.00 38.74 2.29
5192 5361 5.056480 GTGCTACCAAAGAAAATGCCTTTT 58.944 37.500 0.00 0.00 37.28 2.27
5380 5593 5.112686 TGTTACAAGTGTCCAAAAATTGCC 58.887 37.500 0.00 0.00 0.00 4.52
5448 5662 2.855660 TTAGCTACGCGCACTTATGA 57.144 45.000 5.73 0.00 42.61 2.15
5460 5674 8.975410 ACGCGCACTTATGAAGTTTATATATA 57.025 30.769 5.73 0.00 40.46 0.86
5461 5675 9.582431 ACGCGCACTTATGAAGTTTATATATAT 57.418 29.630 5.73 0.00 40.46 0.86
5462 5676 9.835315 CGCGCACTTATGAAGTTTATATATATG 57.165 33.333 8.75 0.00 40.46 1.78
5576 5799 0.944311 TTCTGCTTCTTCGCCGTCAC 60.944 55.000 0.00 0.00 0.00 3.67
5624 5847 1.682257 GCTTCCCTGCTCTGGTCTT 59.318 57.895 0.00 0.00 0.00 3.01
5728 5953 3.181470 ACACAAAATTGCAGTGTTACCCC 60.181 43.478 3.03 0.00 43.40 4.95
5730 5955 4.279671 CACAAAATTGCAGTGTTACCCCTA 59.720 41.667 0.00 0.00 0.00 3.53
5755 5980 1.890876 TGCGCTCAAAGCTTTAAGGA 58.109 45.000 12.25 4.43 39.60 3.36
5791 6016 8.595533 GTTTCATCAGTCTTTTCCTTTCAAAAC 58.404 33.333 0.00 0.00 0.00 2.43
5919 6152 2.733858 GCGTGACAAAAACAGAAGCCAA 60.734 45.455 0.00 0.00 0.00 4.52
5930 6163 2.228822 ACAGAAGCCAATTAAACAGCCG 59.771 45.455 0.00 0.00 0.00 5.52
5951 6184 2.945890 GCCCATCCCTAAAAGGTGTCTG 60.946 54.545 0.00 0.00 31.93 3.51
5962 6195 6.936900 CCTAAAAGGTGTCTGAGAGAAAATCA 59.063 38.462 0.00 0.00 0.00 2.57
5985 6218 0.252375 AGGGCTGGCATGAAACCATT 60.252 50.000 2.88 0.00 36.36 3.16
6041 6277 1.548719 TGCACTCGCCATTAGTAGTGT 59.451 47.619 0.00 0.00 41.11 3.55
6158 6409 6.537453 TCCCATCTTCTTCTTCTTCTACAG 57.463 41.667 0.00 0.00 0.00 2.74
6166 6417 9.308000 TCTTCTTCTTCTTCTACAGAAAGAGAT 57.692 33.333 5.35 0.00 41.25 2.75
6210 6461 2.032799 CCAGCACAACGTACAAACACAT 59.967 45.455 0.00 0.00 0.00 3.21
6214 6465 4.447724 AGCACAACGTACAAACACATAGAG 59.552 41.667 0.00 0.00 0.00 2.43
6215 6466 4.446385 GCACAACGTACAAACACATAGAGA 59.554 41.667 0.00 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 4.522975 GCCCCTGTATGCCCACCC 62.523 72.222 0.00 0.00 0.00 4.61
255 256 1.072965 AGCCCAAGAGGTGAAGTTCAG 59.927 52.381 5.62 0.00 38.26 3.02
321 322 3.365472 AGGTTCACTGCTCCAAAACTTT 58.635 40.909 0.00 0.00 0.00 2.66
380 381 3.295093 TGTGGTTTTTGATGAGGAAGCA 58.705 40.909 0.00 0.00 0.00 3.91
476 477 2.280119 ACTTCGAACGCTGCTGCA 60.280 55.556 16.29 0.88 39.64 4.41
550 551 4.007659 GAGCGATTTAGGGTTTTCTCCAA 58.992 43.478 0.00 0.00 0.00 3.53
551 552 3.263425 AGAGCGATTTAGGGTTTTCTCCA 59.737 43.478 0.00 0.00 0.00 3.86
627 636 2.164865 CTTGGTCTGACGCCTGCTCT 62.165 60.000 1.07 0.00 0.00 4.09
639 648 2.243736 CCTACCTCTCCTCTCTTGGTCT 59.756 54.545 0.00 0.00 32.74 3.85
729 740 1.134694 GCGCGAACCAATGAAGGTC 59.865 57.895 12.10 0.00 42.25 3.85
730 741 1.599518 TGCGCGAACCAATGAAGGT 60.600 52.632 12.10 0.00 45.91 3.50
731 742 1.154225 GTGCGCGAACCAATGAAGG 60.154 57.895 12.10 0.00 0.00 3.46
732 743 1.509787 CGTGCGCGAACCAATGAAG 60.510 57.895 16.08 0.00 41.33 3.02
733 744 2.553770 CGTGCGCGAACCAATGAA 59.446 55.556 16.08 0.00 41.33 2.57
734 745 3.418913 CCGTGCGCGAACCAATGA 61.419 61.111 23.45 0.00 41.33 2.57
747 758 1.882311 TGCCATTAAGCAAGCCGTG 59.118 52.632 0.00 0.00 40.56 4.94
748 759 4.413928 TGCCATTAAGCAAGCCGT 57.586 50.000 0.00 0.00 40.56 5.68
754 765 4.461081 ACCGACTATTTTTGCCATTAAGCA 59.539 37.500 0.00 0.00 42.17 3.91
755 766 4.798387 CACCGACTATTTTTGCCATTAAGC 59.202 41.667 0.00 0.00 0.00 3.09
756 767 4.798387 GCACCGACTATTTTTGCCATTAAG 59.202 41.667 0.00 0.00 0.00 1.85
757 768 4.673061 CGCACCGACTATTTTTGCCATTAA 60.673 41.667 0.00 0.00 0.00 1.40
758 769 3.181505 CGCACCGACTATTTTTGCCATTA 60.182 43.478 0.00 0.00 0.00 1.90
759 770 2.415357 CGCACCGACTATTTTTGCCATT 60.415 45.455 0.00 0.00 0.00 3.16
760 771 1.132262 CGCACCGACTATTTTTGCCAT 59.868 47.619 0.00 0.00 0.00 4.40
761 772 0.519519 CGCACCGACTATTTTTGCCA 59.480 50.000 0.00 0.00 0.00 4.92
762 773 0.179174 CCGCACCGACTATTTTTGCC 60.179 55.000 0.00 0.00 0.00 4.52
763 774 0.796870 GCCGCACCGACTATTTTTGC 60.797 55.000 0.00 0.00 0.00 3.68
764 775 0.179174 GGCCGCACCGACTATTTTTG 60.179 55.000 0.00 0.00 0.00 2.44
765 776 0.322187 AGGCCGCACCGACTATTTTT 60.322 50.000 0.00 0.00 46.52 1.94
766 777 1.024579 CAGGCCGCACCGACTATTTT 61.025 55.000 0.00 0.00 46.52 1.82
767 778 1.449601 CAGGCCGCACCGACTATTT 60.450 57.895 0.00 0.00 46.52 1.40
768 779 1.895020 TTCAGGCCGCACCGACTATT 61.895 55.000 0.00 0.00 46.52 1.73
769 780 2.298158 CTTCAGGCCGCACCGACTAT 62.298 60.000 0.00 0.00 46.52 2.12
770 781 2.992689 TTCAGGCCGCACCGACTA 60.993 61.111 0.00 0.00 46.52 2.59
771 782 4.379243 CTTCAGGCCGCACCGACT 62.379 66.667 0.00 0.00 46.52 4.18
778 789 4.410743 GTTGCAGCTTCAGGCCGC 62.411 66.667 0.00 0.00 44.02 6.53
779 790 4.093952 CGTTGCAGCTTCAGGCCG 62.094 66.667 0.00 0.00 43.05 6.13
780 791 3.741476 CCGTTGCAGCTTCAGGCC 61.741 66.667 0.00 0.00 43.05 5.19
781 792 3.741476 CCCGTTGCAGCTTCAGGC 61.741 66.667 0.00 0.00 42.19 4.85
782 793 3.058160 CCCCGTTGCAGCTTCAGG 61.058 66.667 0.00 0.00 0.00 3.86
783 794 1.580845 CTTCCCCGTTGCAGCTTCAG 61.581 60.000 0.00 0.00 0.00 3.02
836 848 7.390440 CCGCAATGATCAAGTAAGGGATAATAA 59.610 37.037 0.00 0.00 0.00 1.40
837 849 6.878923 CCGCAATGATCAAGTAAGGGATAATA 59.121 38.462 0.00 0.00 0.00 0.98
838 850 5.707298 CCGCAATGATCAAGTAAGGGATAAT 59.293 40.000 0.00 0.00 0.00 1.28
839 851 5.063204 CCGCAATGATCAAGTAAGGGATAA 58.937 41.667 0.00 0.00 0.00 1.75
841 853 3.480470 CCGCAATGATCAAGTAAGGGAT 58.520 45.455 0.00 0.00 0.00 3.85
842 854 2.421388 CCCGCAATGATCAAGTAAGGGA 60.421 50.000 16.85 0.00 38.62 4.20
845 857 1.334869 GGCCCGCAATGATCAAGTAAG 59.665 52.381 0.00 0.00 0.00 2.34
846 858 1.340502 TGGCCCGCAATGATCAAGTAA 60.341 47.619 0.00 0.00 0.00 2.24
869 881 3.005472 GGAACTTGGCCCAGTAAGAAAAC 59.995 47.826 10.40 0.00 0.00 2.43
884 896 0.797249 CGTCGCTCTACGGGAACTTG 60.797 60.000 0.00 0.00 43.89 3.16
885 897 1.505353 CGTCGCTCTACGGGAACTT 59.495 57.895 0.00 0.00 43.89 2.66
953 965 0.514691 CTTTCTGCTTCGCACTCCAC 59.485 55.000 0.00 0.00 33.79 4.02
954 966 0.603707 CCTTTCTGCTTCGCACTCCA 60.604 55.000 0.00 0.00 33.79 3.86
955 967 1.916697 GCCTTTCTGCTTCGCACTCC 61.917 60.000 0.00 0.00 33.79 3.85
956 968 1.230635 TGCCTTTCTGCTTCGCACTC 61.231 55.000 0.00 0.00 33.79 3.51
957 969 1.227943 TGCCTTTCTGCTTCGCACT 60.228 52.632 0.00 0.00 33.79 4.40
958 970 1.081840 GTGCCTTTCTGCTTCGCAC 60.082 57.895 0.00 0.00 42.57 5.34
1265 1284 0.028505 CTTCCTTGGCAATCGCATCG 59.971 55.000 0.00 0.00 41.24 3.84
1345 1364 1.766461 ACATAAGGAGGGAGGGGCG 60.766 63.158 0.00 0.00 0.00 6.13
1549 1577 4.702831 TGATTGTATATTCTGGAAGCGCA 58.297 39.130 11.47 0.00 0.00 6.09
1550 1578 4.377841 GCTGATTGTATATTCTGGAAGCGC 60.378 45.833 0.00 0.00 0.00 5.92
1551 1579 4.153117 GGCTGATTGTATATTCTGGAAGCG 59.847 45.833 0.00 0.00 0.00 4.68
1566 1594 1.085893 TACACGTGCATGGCTGATTG 58.914 50.000 17.22 0.45 0.00 2.67
1601 1629 1.388837 GGCGGGCCCAAAATCGTATT 61.389 55.000 24.92 0.00 0.00 1.89
1633 1662 6.620678 AGGAATACACAATGGACGAATTTTG 58.379 36.000 0.00 0.00 0.00 2.44
1719 1748 1.607628 GCCTCATCCACATTCATCAGC 59.392 52.381 0.00 0.00 0.00 4.26
1779 1808 7.592885 ATCTATGCCAGAATAAACTGCAATT 57.407 32.000 0.00 0.00 36.67 2.32
1876 1905 0.031994 AGAAAAACACGCCACCATGC 59.968 50.000 0.00 0.00 0.00 4.06
1883 1912 2.202295 TGCAGAAAGAAAAACACGCC 57.798 45.000 0.00 0.00 0.00 5.68
1885 1914 5.747565 TCAGTATGCAGAAAGAAAAACACG 58.252 37.500 0.00 0.00 34.76 4.49
1946 1977 3.123621 GGACAGAGCATACAACAACTTCG 59.876 47.826 0.00 0.00 0.00 3.79
1976 2007 4.521146 ACATTCCATTCAGACAGGCTAAG 58.479 43.478 0.00 0.00 0.00 2.18
1986 2017 8.915057 ACCTATCTGATAAACATTCCATTCAG 57.085 34.615 0.00 0.00 33.55 3.02
2039 2070 4.652822 AGGCGAAGAAGGAAATAACTTGT 58.347 39.130 0.00 0.00 0.00 3.16
2091 2122 8.261492 AGTACTGAAGTTCAAGAAATGCATAG 57.739 34.615 7.06 0.00 0.00 2.23
2145 2177 9.995957 TGACAAATTTTATATAATGTCACCACG 57.004 29.630 18.97 0.00 41.39 4.94
2310 2342 4.380531 CTCTTGAAGTGTACTTTGCCTCA 58.619 43.478 0.00 0.00 36.11 3.86
2474 2506 2.069273 CAACTACTTTCGGCACCTCTG 58.931 52.381 0.00 0.00 0.00 3.35
2489 2521 7.550551 CAGGCTCATTCTTCTCATTTACAACTA 59.449 37.037 0.00 0.00 0.00 2.24
2496 2528 5.045724 AGACTCAGGCTCATTCTTCTCATTT 60.046 40.000 0.00 0.00 0.00 2.32
3200 3232 9.801873 CCATTTTGATAACAAGTATTTTCGGAT 57.198 29.630 0.00 0.00 37.32 4.18
3202 3234 9.801873 ATCCATTTTGATAACAAGTATTTTCGG 57.198 29.630 0.00 0.00 37.32 4.30
3218 3250 9.320295 AGATACAACCCTTTTTATCCATTTTGA 57.680 29.630 0.00 0.00 0.00 2.69
3224 3256 9.816787 AGTTTTAGATACAACCCTTTTTATCCA 57.183 29.630 0.00 0.00 0.00 3.41
3255 3287 9.756571 GGATAAAAGGAGATGTATCTAGACCTA 57.243 37.037 0.00 0.00 37.25 3.08
3256 3288 8.235230 TGGATAAAAGGAGATGTATCTAGACCT 58.765 37.037 0.00 0.00 37.25 3.85
3257 3289 8.423906 TGGATAAAAGGAGATGTATCTAGACC 57.576 38.462 0.00 0.00 37.25 3.85
3265 3297 9.919416 TCATCAAAATGGATAAAAGGAGATGTA 57.081 29.630 0.00 0.00 33.42 2.29
3266 3298 8.689972 GTCATCAAAATGGATAAAAGGAGATGT 58.310 33.333 0.00 0.00 33.42 3.06
3267 3299 8.689061 TGTCATCAAAATGGATAAAAGGAGATG 58.311 33.333 0.00 0.00 33.42 2.90
3268 3300 8.827832 TGTCATCAAAATGGATAAAAGGAGAT 57.172 30.769 0.00 0.00 33.42 2.75
3269 3301 8.648698 TTGTCATCAAAATGGATAAAAGGAGA 57.351 30.769 0.00 0.00 33.42 3.71
3270 3302 8.526147 ACTTGTCATCAAAATGGATAAAAGGAG 58.474 33.333 0.00 0.00 33.42 3.69
3271 3303 8.421249 ACTTGTCATCAAAATGGATAAAAGGA 57.579 30.769 0.00 0.00 33.42 3.36
3277 3309 9.473007 TGGAAATACTTGTCATCAAAATGGATA 57.527 29.630 0.00 0.00 33.42 2.59
3278 3310 8.365060 TGGAAATACTTGTCATCAAAATGGAT 57.635 30.769 0.00 0.00 33.42 3.41
3279 3311 7.669304 TCTGGAAATACTTGTCATCAAAATGGA 59.331 33.333 0.00 0.00 33.42 3.41
3280 3312 7.756722 GTCTGGAAATACTTGTCATCAAAATGG 59.243 37.037 0.00 0.00 33.42 3.16
3281 3313 7.482743 CGTCTGGAAATACTTGTCATCAAAATG 59.517 37.037 0.00 0.00 32.87 2.32
3282 3314 7.362056 CCGTCTGGAAATACTTGTCATCAAAAT 60.362 37.037 0.00 0.00 37.49 1.82
3283 3315 6.072728 CCGTCTGGAAATACTTGTCATCAAAA 60.073 38.462 0.00 0.00 37.49 2.44
3284 3316 5.411361 CCGTCTGGAAATACTTGTCATCAAA 59.589 40.000 0.00 0.00 37.49 2.69
3285 3317 4.935205 CCGTCTGGAAATACTTGTCATCAA 59.065 41.667 0.00 0.00 37.49 2.57
3286 3318 4.221924 TCCGTCTGGAAATACTTGTCATCA 59.778 41.667 0.00 0.00 42.85 3.07
3287 3319 4.755411 TCCGTCTGGAAATACTTGTCATC 58.245 43.478 0.00 0.00 42.85 2.92
3288 3320 4.383118 CCTCCGTCTGGAAATACTTGTCAT 60.383 45.833 0.00 0.00 45.87 3.06
3289 3321 3.056107 CCTCCGTCTGGAAATACTTGTCA 60.056 47.826 0.00 0.00 45.87 3.58
3290 3322 3.522553 CCTCCGTCTGGAAATACTTGTC 58.477 50.000 0.00 0.00 45.87 3.18
3291 3323 2.236395 CCCTCCGTCTGGAAATACTTGT 59.764 50.000 0.00 0.00 45.87 3.16
3292 3324 2.500098 TCCCTCCGTCTGGAAATACTTG 59.500 50.000 0.00 0.00 45.87 3.16
3293 3325 2.766828 CTCCCTCCGTCTGGAAATACTT 59.233 50.000 0.00 0.00 45.87 2.24
3294 3326 2.292323 ACTCCCTCCGTCTGGAAATACT 60.292 50.000 0.00 0.00 45.87 2.12
3295 3327 2.108970 ACTCCCTCCGTCTGGAAATAC 58.891 52.381 0.00 0.00 45.87 1.89
3296 3328 2.544844 ACTCCCTCCGTCTGGAAATA 57.455 50.000 0.00 0.00 45.87 1.40
3297 3329 2.544844 TACTCCCTCCGTCTGGAAAT 57.455 50.000 0.00 0.00 45.87 2.17
3298 3330 2.544844 ATACTCCCTCCGTCTGGAAA 57.455 50.000 0.00 0.00 45.87 3.13
3299 3331 3.139584 TCATATACTCCCTCCGTCTGGAA 59.860 47.826 0.00 0.00 45.87 3.53
3300 3332 2.714793 TCATATACTCCCTCCGTCTGGA 59.285 50.000 0.00 0.00 43.88 3.86
3301 3333 3.156288 TCATATACTCCCTCCGTCTGG 57.844 52.381 0.00 0.00 0.00 3.86
3302 3334 5.946972 ACTTATCATATACTCCCTCCGTCTG 59.053 44.000 0.00 0.00 0.00 3.51
3303 3335 6.142259 ACTTATCATATACTCCCTCCGTCT 57.858 41.667 0.00 0.00 0.00 4.18
3304 3336 5.944599 TGACTTATCATATACTCCCTCCGTC 59.055 44.000 0.00 0.00 0.00 4.79
3305 3337 5.888901 TGACTTATCATATACTCCCTCCGT 58.111 41.667 0.00 0.00 0.00 4.69
3306 3338 5.946972 ACTGACTTATCATATACTCCCTCCG 59.053 44.000 0.00 0.00 33.22 4.63
3307 3339 7.784470 AACTGACTTATCATATACTCCCTCC 57.216 40.000 0.00 0.00 33.22 4.30
3348 3380 9.091220 ACCTAAGACTAGAACTGAACTAACATT 57.909 33.333 0.00 0.00 0.00 2.71
3349 3381 8.653036 ACCTAAGACTAGAACTGAACTAACAT 57.347 34.615 0.00 0.00 0.00 2.71
3350 3382 9.578576 TTACCTAAGACTAGAACTGAACTAACA 57.421 33.333 0.00 0.00 0.00 2.41
3351 3383 9.838975 GTTACCTAAGACTAGAACTGAACTAAC 57.161 37.037 0.00 0.00 0.00 2.34
3379 3535 2.170607 AGCATACCGCCACATAGAACTT 59.829 45.455 0.00 0.00 44.04 2.66
3408 3564 1.674962 CTTCTGGAAAGCATGCTAGCC 59.325 52.381 23.00 23.98 34.23 3.93
3448 3604 6.968904 GCTGTTAACCATTATCACACATCAAG 59.031 38.462 2.48 0.00 0.00 3.02
3456 3612 7.915397 CCTTGTAATGCTGTTAACCATTATCAC 59.085 37.037 15.79 9.62 36.60 3.06
3484 3642 6.899393 TTAGACAATTGTGCTTCTGGAAAT 57.101 33.333 17.58 0.00 0.00 2.17
3485 3643 6.707440 TTTAGACAATTGTGCTTCTGGAAA 57.293 33.333 17.58 7.18 0.00 3.13
3486 3644 6.707440 TTTTAGACAATTGTGCTTCTGGAA 57.293 33.333 17.58 4.09 0.00 3.53
3487 3645 6.707440 TTTTTAGACAATTGTGCTTCTGGA 57.293 33.333 17.58 0.00 0.00 3.86
3488 3646 6.128742 GCATTTTTAGACAATTGTGCTTCTGG 60.129 38.462 17.58 0.58 0.00 3.86
3489 3647 6.421501 TGCATTTTTAGACAATTGTGCTTCTG 59.578 34.615 17.58 5.90 32.87 3.02
3490 3648 6.514947 TGCATTTTTAGACAATTGTGCTTCT 58.485 32.000 17.58 9.26 32.87 2.85
3491 3649 6.768029 TGCATTTTTAGACAATTGTGCTTC 57.232 33.333 17.58 0.81 32.87 3.86
3492 3650 6.707161 ACATGCATTTTTAGACAATTGTGCTT 59.293 30.769 17.58 5.94 32.87 3.91
3493 3651 6.225318 ACATGCATTTTTAGACAATTGTGCT 58.775 32.000 17.58 14.63 32.87 4.40
3494 3652 6.470557 ACATGCATTTTTAGACAATTGTGC 57.529 33.333 17.58 10.97 0.00 4.57
3495 3653 8.074474 TCAACATGCATTTTTAGACAATTGTG 57.926 30.769 17.58 0.00 0.00 3.33
3496 3654 7.385752 CCTCAACATGCATTTTTAGACAATTGT 59.614 33.333 11.78 11.78 0.00 2.71
3497 3655 7.385752 ACCTCAACATGCATTTTTAGACAATTG 59.614 33.333 8.10 3.24 0.00 2.32
3498 3656 7.385752 CACCTCAACATGCATTTTTAGACAATT 59.614 33.333 8.10 0.00 0.00 2.32
3499 3657 6.869913 CACCTCAACATGCATTTTTAGACAAT 59.130 34.615 8.10 0.00 0.00 2.71
3500 3658 6.215121 CACCTCAACATGCATTTTTAGACAA 58.785 36.000 8.10 0.00 0.00 3.18
3501 3659 5.278907 CCACCTCAACATGCATTTTTAGACA 60.279 40.000 8.10 0.00 0.00 3.41
3502 3660 5.163513 CCACCTCAACATGCATTTTTAGAC 58.836 41.667 8.10 0.00 0.00 2.59
3503 3661 4.832266 ACCACCTCAACATGCATTTTTAGA 59.168 37.500 8.10 0.00 0.00 2.10
3504 3662 5.138125 ACCACCTCAACATGCATTTTTAG 57.862 39.130 0.00 0.00 0.00 1.85
3561 3719 4.986659 GTCATTCAGCTTCAAAACTGCAAT 59.013 37.500 0.00 0.00 33.80 3.56
3644 3802 5.066505 CAGTGGGAATTTATAGACAAGCCAC 59.933 44.000 0.00 0.00 0.00 5.01
3790 3949 0.673985 GCCACTTGAAAGTTGGACCC 59.326 55.000 12.84 0.00 37.08 4.46
3797 3956 2.435372 TTCACAGGCCACTTGAAAGT 57.565 45.000 5.01 0.00 40.60 2.66
3857 4016 3.384668 TGAGAACTTCTGTCTTGCTTCG 58.615 45.455 0.00 0.00 0.00 3.79
4078 4237 3.421919 AGAACGTCCCGGGATTAAAAA 57.578 42.857 29.73 0.00 0.00 1.94
4089 4248 0.949397 AAAGGCGAAAAGAACGTCCC 59.051 50.000 0.00 0.00 35.94 4.46
4093 4252 6.019762 GGAGTATAAAAAGGCGAAAAGAACG 58.980 40.000 0.00 0.00 0.00 3.95
4102 4261 9.490379 AATGATAAGTAGGAGTATAAAAAGGCG 57.510 33.333 0.00 0.00 0.00 5.52
4139 4298 3.819902 GGACGGAGGGAGTACTATACTTG 59.180 52.174 0.00 0.00 39.59 3.16
4150 4309 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
4152 4311 2.365582 CACTTATTTTGGGACGGAGGG 58.634 52.381 0.00 0.00 0.00 4.30
4153 4312 1.743394 GCACTTATTTTGGGACGGAGG 59.257 52.381 0.00 0.00 0.00 4.30
4154 4313 1.743394 GGCACTTATTTTGGGACGGAG 59.257 52.381 0.00 0.00 0.00 4.63
4156 4315 1.743394 GAGGCACTTATTTTGGGACGG 59.257 52.381 0.00 0.00 41.55 4.79
4157 4316 2.432444 TGAGGCACTTATTTTGGGACG 58.568 47.619 0.00 0.00 41.55 4.79
4159 4318 6.229733 CAAAATTGAGGCACTTATTTTGGGA 58.770 36.000 18.38 0.00 45.78 4.37
4160 4319 6.484818 CAAAATTGAGGCACTTATTTTGGG 57.515 37.500 18.38 4.66 45.78 4.12
4163 4322 7.655732 GGTGTACAAAATTGAGGCACTTATTTT 59.344 33.333 0.00 0.00 41.55 1.82
4164 4323 7.151976 GGTGTACAAAATTGAGGCACTTATTT 58.848 34.615 0.00 0.00 41.55 1.40
4165 4324 6.295067 GGGTGTACAAAATTGAGGCACTTATT 60.295 38.462 0.00 0.00 41.55 1.40
4166 4325 5.185056 GGGTGTACAAAATTGAGGCACTTAT 59.815 40.000 0.00 0.00 41.55 1.73
4167 4326 4.521256 GGGTGTACAAAATTGAGGCACTTA 59.479 41.667 0.00 0.00 41.55 2.24
4168 4327 3.320826 GGGTGTACAAAATTGAGGCACTT 59.679 43.478 0.00 0.00 41.55 3.16
4170 4329 2.890945 AGGGTGTACAAAATTGAGGCAC 59.109 45.455 0.00 5.76 0.00 5.01
4171 4330 3.153919 GAGGGTGTACAAAATTGAGGCA 58.846 45.455 0.00 0.00 0.00 4.75
4172 4331 2.492088 GGAGGGTGTACAAAATTGAGGC 59.508 50.000 0.00 0.00 0.00 4.70
4173 4332 2.747446 CGGAGGGTGTACAAAATTGAGG 59.253 50.000 0.00 0.00 0.00 3.86
4174 4333 3.408634 ACGGAGGGTGTACAAAATTGAG 58.591 45.455 0.00 0.00 0.00 3.02
4175 4334 3.495434 ACGGAGGGTGTACAAAATTGA 57.505 42.857 0.00 0.00 0.00 2.57
4176 4335 4.577834 AAACGGAGGGTGTACAAAATTG 57.422 40.909 0.00 0.00 0.00 2.32
4177 4336 5.601583 AAAAACGGAGGGTGTACAAAATT 57.398 34.783 0.00 0.00 0.00 1.82
4178 4337 6.904463 ATAAAAACGGAGGGTGTACAAAAT 57.096 33.333 0.00 0.00 0.00 1.82
4179 4338 6.712179 AATAAAAACGGAGGGTGTACAAAA 57.288 33.333 0.00 0.00 0.00 2.44
4180 4339 6.712179 AAATAAAAACGGAGGGTGTACAAA 57.288 33.333 0.00 0.00 0.00 2.83
4181 4340 6.997476 ACTAAATAAAAACGGAGGGTGTACAA 59.003 34.615 0.00 0.00 0.00 2.41
4182 4341 6.532826 ACTAAATAAAAACGGAGGGTGTACA 58.467 36.000 0.00 0.00 0.00 2.90
4183 4342 6.875726 AGACTAAATAAAAACGGAGGGTGTAC 59.124 38.462 0.00 0.00 0.00 2.90
4184 4343 6.875195 CAGACTAAATAAAAACGGAGGGTGTA 59.125 38.462 0.00 0.00 0.00 2.90
4185 4344 5.704053 CAGACTAAATAAAAACGGAGGGTGT 59.296 40.000 0.00 0.00 0.00 4.16
4186 4345 5.391629 GCAGACTAAATAAAAACGGAGGGTG 60.392 44.000 0.00 0.00 0.00 4.61
4187 4346 4.698780 GCAGACTAAATAAAAACGGAGGGT 59.301 41.667 0.00 0.00 0.00 4.34
4188 4347 4.698304 TGCAGACTAAATAAAAACGGAGGG 59.302 41.667 0.00 0.00 0.00 4.30
4189 4348 5.873179 TGCAGACTAAATAAAAACGGAGG 57.127 39.130 0.00 0.00 0.00 4.30
4192 4351 9.878599 CCTAATATGCAGACTAAATAAAAACGG 57.121 33.333 0.00 0.00 0.00 4.44
4199 4358 9.555727 GGTCAAACCTAATATGCAGACTAAATA 57.444 33.333 0.00 0.00 34.73 1.40
4200 4359 7.226720 CGGTCAAACCTAATATGCAGACTAAAT 59.773 37.037 0.00 0.00 35.66 1.40
4201 4360 6.537301 CGGTCAAACCTAATATGCAGACTAAA 59.463 38.462 0.00 0.00 35.66 1.85
4202 4361 6.046593 CGGTCAAACCTAATATGCAGACTAA 58.953 40.000 0.00 0.00 35.66 2.24
4203 4362 5.361571 TCGGTCAAACCTAATATGCAGACTA 59.638 40.000 0.00 0.00 35.66 2.59
4204 4363 4.161565 TCGGTCAAACCTAATATGCAGACT 59.838 41.667 0.00 0.00 35.66 3.24
4205 4364 4.439057 TCGGTCAAACCTAATATGCAGAC 58.561 43.478 0.00 0.00 35.66 3.51
4206 4365 4.746535 TCGGTCAAACCTAATATGCAGA 57.253 40.909 0.00 0.00 35.66 4.26
4207 4366 4.876107 ACTTCGGTCAAACCTAATATGCAG 59.124 41.667 0.00 0.00 35.66 4.41
4208 4367 4.839121 ACTTCGGTCAAACCTAATATGCA 58.161 39.130 0.00 0.00 35.66 3.96
4209 4368 5.405331 GACTTCGGTCAAACCTAATATGC 57.595 43.478 0.00 0.00 43.91 3.14
4291 4450 9.679661 TCATTATTGAATGTACTAACACACCAT 57.320 29.630 0.00 0.00 42.71 3.55
4292 4451 9.508642 TTCATTATTGAATGTACTAACACACCA 57.491 29.630 0.00 0.00 42.71 4.17
4369 4528 8.398665 AGTCAAGCTTTGTAAACTTTGACTAAG 58.601 33.333 19.57 3.76 39.87 2.18
4370 4529 8.276252 AGTCAAGCTTTGTAAACTTTGACTAA 57.724 30.769 19.57 0.00 33.77 2.24
4371 4530 7.859325 AGTCAAGCTTTGTAAACTTTGACTA 57.141 32.000 19.57 0.00 33.77 2.59
4372 4531 6.759497 AGTCAAGCTTTGTAAACTTTGACT 57.241 33.333 17.37 17.37 32.23 3.41
4373 4532 7.812309 AAAGTCAAGCTTTGTAAACTTTGAC 57.188 32.000 14.76 14.88 45.00 3.18
4386 4545 6.524101 TTAGTTTTGGTCAAAGTCAAGCTT 57.476 33.333 0.00 0.00 39.52 3.74
4387 4546 6.715347 ATTAGTTTTGGTCAAAGTCAAGCT 57.285 33.333 0.00 0.00 30.16 3.74
4388 4547 7.062255 GCATATTAGTTTTGGTCAAAGTCAAGC 59.938 37.037 0.00 0.00 30.16 4.01
4389 4548 7.271223 CGCATATTAGTTTTGGTCAAAGTCAAG 59.729 37.037 0.00 0.00 30.16 3.02
4390 4549 7.081349 CGCATATTAGTTTTGGTCAAAGTCAA 58.919 34.615 0.00 0.00 30.16 3.18
4391 4550 6.348950 CCGCATATTAGTTTTGGTCAAAGTCA 60.349 38.462 0.00 0.00 30.16 3.41
4392 4551 6.027749 CCGCATATTAGTTTTGGTCAAAGTC 58.972 40.000 0.00 0.00 30.16 3.01
4393 4552 5.708230 TCCGCATATTAGTTTTGGTCAAAGT 59.292 36.000 0.00 0.00 32.41 2.66
4394 4553 6.027749 GTCCGCATATTAGTTTTGGTCAAAG 58.972 40.000 0.00 0.00 0.00 2.77
4395 4554 5.708230 AGTCCGCATATTAGTTTTGGTCAAA 59.292 36.000 0.00 0.00 0.00 2.69
4396 4555 5.250200 AGTCCGCATATTAGTTTTGGTCAA 58.750 37.500 0.00 0.00 0.00 3.18
4397 4556 4.839121 AGTCCGCATATTAGTTTTGGTCA 58.161 39.130 0.00 0.00 0.00 4.02
4398 4557 6.913873 TTAGTCCGCATATTAGTTTTGGTC 57.086 37.500 0.00 0.00 0.00 4.02
4399 4558 7.875327 ATTTAGTCCGCATATTAGTTTTGGT 57.125 32.000 0.00 0.00 0.00 3.67
4404 4563 9.925268 CGTTTTTATTTAGTCCGCATATTAGTT 57.075 29.630 0.00 0.00 0.00 2.24
4405 4564 8.553696 CCGTTTTTATTTAGTCCGCATATTAGT 58.446 33.333 0.00 0.00 0.00 2.24
4406 4565 8.767085 TCCGTTTTTATTTAGTCCGCATATTAG 58.233 33.333 0.00 0.00 0.00 1.73
4407 4566 8.659925 TCCGTTTTTATTTAGTCCGCATATTA 57.340 30.769 0.00 0.00 0.00 0.98
4408 4567 7.255001 CCTCCGTTTTTATTTAGTCCGCATATT 60.255 37.037 0.00 0.00 0.00 1.28
4409 4568 6.204108 CCTCCGTTTTTATTTAGTCCGCATAT 59.796 38.462 0.00 0.00 0.00 1.78
4410 4569 5.524646 CCTCCGTTTTTATTTAGTCCGCATA 59.475 40.000 0.00 0.00 0.00 3.14
4411 4570 4.334481 CCTCCGTTTTTATTTAGTCCGCAT 59.666 41.667 0.00 0.00 0.00 4.73
4412 4571 3.685756 CCTCCGTTTTTATTTAGTCCGCA 59.314 43.478 0.00 0.00 0.00 5.69
4413 4572 3.064408 CCCTCCGTTTTTATTTAGTCCGC 59.936 47.826 0.00 0.00 0.00 5.54
4414 4573 4.506758 TCCCTCCGTTTTTATTTAGTCCG 58.493 43.478 0.00 0.00 0.00 4.79
4415 4574 5.494724 ACTCCCTCCGTTTTTATTTAGTCC 58.505 41.667 0.00 0.00 0.00 3.85
4416 4575 7.326454 AGTACTCCCTCCGTTTTTATTTAGTC 58.674 38.462 0.00 0.00 0.00 2.59
4417 4576 7.250032 AGTACTCCCTCCGTTTTTATTTAGT 57.750 36.000 0.00 0.00 0.00 2.24
4418 4577 9.091784 GTTAGTACTCCCTCCGTTTTTATTTAG 57.908 37.037 0.00 0.00 0.00 1.85
4419 4578 8.815912 AGTTAGTACTCCCTCCGTTTTTATTTA 58.184 33.333 0.00 0.00 0.00 1.40
4420 4579 7.683578 AGTTAGTACTCCCTCCGTTTTTATTT 58.316 34.615 0.00 0.00 0.00 1.40
4421 4580 7.250032 AGTTAGTACTCCCTCCGTTTTTATT 57.750 36.000 0.00 0.00 0.00 1.40
4422 4581 6.864151 AGTTAGTACTCCCTCCGTTTTTAT 57.136 37.500 0.00 0.00 0.00 1.40
4423 4582 6.670695 AAGTTAGTACTCCCTCCGTTTTTA 57.329 37.500 0.00 0.00 31.99 1.52
4424 4583 5.557576 AAGTTAGTACTCCCTCCGTTTTT 57.442 39.130 0.00 0.00 31.99 1.94
4425 4584 5.557576 AAAGTTAGTACTCCCTCCGTTTT 57.442 39.130 0.00 0.00 31.99 2.43
4426 4585 5.777223 ACTAAAGTTAGTACTCCCTCCGTTT 59.223 40.000 0.00 0.00 41.92 3.60
4427 4586 5.328565 ACTAAAGTTAGTACTCCCTCCGTT 58.671 41.667 0.00 0.00 41.92 4.44
4428 4587 4.928263 ACTAAAGTTAGTACTCCCTCCGT 58.072 43.478 0.00 0.00 41.92 4.69
4450 4609 7.437267 GTGTCTCAAGCTTAGTACAACTTTGTA 59.563 37.037 0.00 0.00 42.35 2.41
4451 4610 6.258068 GTGTCTCAAGCTTAGTACAACTTTGT 59.742 38.462 0.00 0.00 44.86 2.83
4452 4611 6.480320 AGTGTCTCAAGCTTAGTACAACTTTG 59.520 38.462 0.00 0.00 0.00 2.77
4453 4612 6.583562 AGTGTCTCAAGCTTAGTACAACTTT 58.416 36.000 0.00 0.00 0.00 2.66
4454 4613 6.163135 AGTGTCTCAAGCTTAGTACAACTT 57.837 37.500 0.00 0.00 0.00 2.66
4455 4614 5.793030 AGTGTCTCAAGCTTAGTACAACT 57.207 39.130 0.00 0.00 0.00 3.16
4456 4615 8.535690 AATAAGTGTCTCAAGCTTAGTACAAC 57.464 34.615 0.00 0.00 0.00 3.32
4457 4616 9.555727 AAAATAAGTGTCTCAAGCTTAGTACAA 57.444 29.630 0.00 0.00 0.00 2.41
4458 4617 8.988934 CAAAATAAGTGTCTCAAGCTTAGTACA 58.011 33.333 0.00 0.36 0.00 2.90
4459 4618 8.443937 CCAAAATAAGTGTCTCAAGCTTAGTAC 58.556 37.037 0.00 0.00 0.00 2.73
4460 4619 7.606456 CCCAAAATAAGTGTCTCAAGCTTAGTA 59.394 37.037 0.00 0.00 0.00 1.82
4461 4620 6.431234 CCCAAAATAAGTGTCTCAAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
4462 4621 6.655003 TCCCAAAATAAGTGTCTCAAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
4463 4622 6.430000 GTCCCAAAATAAGTGTCTCAAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
4464 4623 5.241728 GTCCCAAAATAAGTGTCTCAAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
4465 4624 4.762251 GTCCCAAAATAAGTGTCTCAAGCT 59.238 41.667 0.00 0.00 0.00 3.74
4466 4625 4.378459 CGTCCCAAAATAAGTGTCTCAAGC 60.378 45.833 0.00 0.00 0.00 4.01
4467 4626 4.154195 CCGTCCCAAAATAAGTGTCTCAAG 59.846 45.833 0.00 0.00 0.00 3.02
4468 4627 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
4469 4628 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
4470 4629 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
4471 4630 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
4472 4631 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
4473 4632 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
4474 4633 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
4475 4634 2.271777 TCCCTCCGTCCCAAAATAAGT 58.728 47.619 0.00 0.00 0.00 2.24
4476 4635 3.359695 TTCCCTCCGTCCCAAAATAAG 57.640 47.619 0.00 0.00 0.00 1.73
4477 4636 3.267291 TGATTCCCTCCGTCCCAAAATAA 59.733 43.478 0.00 0.00 0.00 1.40
4478 4637 2.847449 TGATTCCCTCCGTCCCAAAATA 59.153 45.455 0.00 0.00 0.00 1.40
4479 4638 1.638589 TGATTCCCTCCGTCCCAAAAT 59.361 47.619 0.00 0.00 0.00 1.82
4480 4639 1.068948 TGATTCCCTCCGTCCCAAAA 58.931 50.000 0.00 0.00 0.00 2.44
4481 4640 1.211949 GATGATTCCCTCCGTCCCAAA 59.788 52.381 0.00 0.00 0.00 3.28
4482 4641 0.837272 GATGATTCCCTCCGTCCCAA 59.163 55.000 0.00 0.00 0.00 4.12
4483 4642 0.326143 TGATGATTCCCTCCGTCCCA 60.326 55.000 0.00 0.00 0.00 4.37
4484 4643 0.106894 GTGATGATTCCCTCCGTCCC 59.893 60.000 0.00 0.00 0.00 4.46
4485 4644 0.830648 TGTGATGATTCCCTCCGTCC 59.169 55.000 0.00 0.00 0.00 4.79
4486 4645 1.482593 ACTGTGATGATTCCCTCCGTC 59.517 52.381 0.00 0.00 0.00 4.79
4487 4646 1.573108 ACTGTGATGATTCCCTCCGT 58.427 50.000 0.00 0.00 0.00 4.69
4488 4647 2.698855 AACTGTGATGATTCCCTCCG 57.301 50.000 0.00 0.00 0.00 4.63
4532 4695 3.263489 AGCTGATCAACTGTGATGGAG 57.737 47.619 0.00 0.00 44.83 3.86
4543 4706 3.055094 GGAGTTAGGGTCAAGCTGATCAA 60.055 47.826 0.00 0.00 0.00 2.57
4554 4717 1.652947 TCACTTGGGGAGTTAGGGTC 58.347 55.000 0.00 0.00 36.10 4.46
4566 4732 9.003658 AGTACTGAAAACAGATTATTCACTTGG 57.996 33.333 0.00 0.00 0.00 3.61
4616 4782 4.023707 CCAATCAATCCGGAGCTATCAAAC 60.024 45.833 11.34 0.00 0.00 2.93
4667 4833 2.097825 GCACTTGAAATGGCAGAGGAT 58.902 47.619 0.00 0.00 0.00 3.24
4724 4890 2.215907 AATCCGAAGCACTCAGATCG 57.784 50.000 0.00 0.00 35.19 3.69
4777 4943 2.064762 GCTAAGTATGCTGATGCCTCG 58.935 52.381 0.00 0.00 38.71 4.63
4794 4960 1.354031 TCAAGGAAACCAGCCATGCTA 59.646 47.619 0.00 0.00 36.40 3.49
5015 5181 2.163010 CCACCAATCTGTTGTCATGCTC 59.837 50.000 0.00 0.00 33.36 4.26
5016 5182 2.165167 CCACCAATCTGTTGTCATGCT 58.835 47.619 0.00 0.00 33.36 3.79
5077 5246 4.985538 TCCTCATTCTTTCTCTACCGAC 57.014 45.455 0.00 0.00 0.00 4.79
5165 5334 4.367450 GCATTTTCTTTGGTAGCACAACA 58.633 39.130 0.00 0.00 0.00 3.33
5184 5353 6.610075 ATGGTCATTACAAAGAAAAGGCAT 57.390 33.333 0.00 0.00 0.00 4.40
5192 5361 8.821686 ATGGTATGAAATGGTCATTACAAAGA 57.178 30.769 0.00 0.00 45.13 2.52
5380 5593 2.205074 AGAAAGCAGAACAGTGACACG 58.795 47.619 0.00 0.00 0.00 4.49
5460 5674 1.757306 GGGGACATCGCCTCATCAT 59.243 57.895 7.70 0.00 44.66 2.45
5461 5675 3.230284 GGGGACATCGCCTCATCA 58.770 61.111 7.70 0.00 44.66 3.07
5588 5811 1.686325 GCGGATGAGAACCCAGGCTA 61.686 60.000 0.00 0.00 0.00 3.93
5624 5847 1.212751 CGTGCAGATGTCGGAGTCA 59.787 57.895 0.00 0.00 0.00 3.41
5684 5907 8.012809 TGTGTGCGTCTTTATTTTGTTATACAG 58.987 33.333 0.00 0.00 0.00 2.74
5739 5964 6.582672 GTGTAATGTTCCTTAAAGCTTTGAGC 59.417 38.462 22.18 13.44 42.84 4.26
5791 6016 6.142320 CCACTCTTGTTTTAAGCTTTTTAGCG 59.858 38.462 3.20 0.00 40.27 4.26
5832 6063 6.160459 ACCAGTCATTCAGTCCCCTTTTATAT 59.840 38.462 0.00 0.00 0.00 0.86
5833 6064 5.491078 ACCAGTCATTCAGTCCCCTTTTATA 59.509 40.000 0.00 0.00 0.00 0.98
5855 6086 7.260603 AGCAAAGCAAACATCAGATATAAACC 58.739 34.615 0.00 0.00 0.00 3.27
5919 6152 0.755327 GGGATGGGCGGCTGTTTAAT 60.755 55.000 9.56 0.00 0.00 1.40
5930 6163 1.285078 AGACACCTTTTAGGGATGGGC 59.715 52.381 0.00 0.00 40.58 5.36
5951 6184 4.814147 CCAGCCCTTTTTGATTTTCTCTC 58.186 43.478 0.00 0.00 0.00 3.20
5962 6195 1.072173 GGTTTCATGCCAGCCCTTTTT 59.928 47.619 0.00 0.00 0.00 1.94
6041 6277 1.077805 TAGGCTCCAACTCCGACCA 59.922 57.895 0.00 0.00 0.00 4.02
6158 6409 7.336931 TGGTGTTTTATGAGGCTTATCTCTTTC 59.663 37.037 0.00 0.00 34.98 2.62
6166 6417 3.245087 TGGCTGGTGTTTTATGAGGCTTA 60.245 43.478 0.00 0.00 0.00 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.