Multiple sequence alignment - TraesCS1A01G192800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G192800 chr1A 100.000 3953 0 0 1 3953 348401619 348397667 0.000000e+00 7300.0
1 TraesCS1A01G192800 chr1A 89.961 259 21 4 3105 3359 479213924 479214181 2.940000e-86 329.0
2 TraesCS1A01G192800 chr1A 87.500 72 7 2 2426 2496 49517132 49517062 9.100000e-12 82.4
3 TraesCS1A01G192800 chr1D 87.321 3147 144 101 92 3123 275944949 275941943 0.000000e+00 3365.0
4 TraesCS1A01G192800 chr1D 87.809 607 41 5 3353 3940 275941959 275941367 0.000000e+00 680.0
5 TraesCS1A01G192800 chr1B 87.232 2984 131 106 217 3111 375259281 375256459 0.000000e+00 3169.0
6 TraesCS1A01G192800 chr1B 86.547 446 32 8 3353 3786 375256468 375256039 2.150000e-127 466.0
7 TraesCS1A01G192800 chr1B 86.842 114 13 2 3775 3888 375256017 375255906 4.150000e-25 126.0
8 TraesCS1A01G192800 chr3A 91.440 257 18 3 3106 3359 688592954 688592699 2.260000e-92 350.0
9 TraesCS1A01G192800 chr3A 91.983 237 17 1 3114 3348 584013158 584013394 8.190000e-87 331.0
10 TraesCS1A01G192800 chr3A 93.750 48 3 0 28 75 554021946 554021993 5.480000e-09 73.1
11 TraesCS1A01G192800 chr2A 92.975 242 14 2 3115 3354 729497326 729497566 2.260000e-92 350.0
12 TraesCS1A01G192800 chr2A 91.129 248 19 2 3112 3357 84977526 84977772 2.280000e-87 333.0
13 TraesCS1A01G192800 chr2A 90.763 249 21 1 3112 3358 753568598 753568846 8.190000e-87 331.0
14 TraesCS1A01G192800 chr2A 81.034 232 19 15 2038 2267 697290087 697290295 1.140000e-35 161.0
15 TraesCS1A01G192800 chr2A 78.986 138 18 9 2404 2530 697290596 697290733 2.530000e-12 84.2
16 TraesCS1A01G192800 chr2A 92.500 40 2 1 2232 2270 727305444 727305483 5.520000e-04 56.5
17 TraesCS1A01G192800 chr2A 92.500 40 2 1 2232 2270 727350716 727350755 5.520000e-04 56.5
18 TraesCS1A01G192800 chr5A 91.870 246 17 2 3111 3354 8506266 8506022 1.360000e-89 340.0
19 TraesCS1A01G192800 chr3B 91.235 251 17 4 3111 3358 12175018 12174770 1.760000e-88 337.0
20 TraesCS1A01G192800 chr3B 90.566 53 3 2 23 75 785690389 785690439 7.090000e-08 69.4
21 TraesCS1A01G192800 chr6B 90.514 253 21 2 3110 3360 21064788 21064537 8.190000e-87 331.0
22 TraesCS1A01G192800 chr6B 93.878 49 2 1 28 76 716319786 716319833 5.480000e-09 73.1
23 TraesCS1A01G192800 chr2B 82.353 102 12 5 2403 2498 664934409 664934510 2.530000e-12 84.2
24 TraesCS1A01G192800 chr5D 94.231 52 3 0 28 79 41553444 41553495 3.270000e-11 80.5
25 TraesCS1A01G192800 chr5B 100.000 43 0 0 28 70 469493449 469493491 3.270000e-11 80.5
26 TraesCS1A01G192800 chr5B 97.674 43 1 0 28 70 469802595 469802637 1.520000e-09 75.0
27 TraesCS1A01G192800 chr3D 94.340 53 1 2 22 74 587944908 587944958 3.270000e-11 80.5
28 TraesCS1A01G192800 chr4B 97.778 45 1 0 26 70 583071770 583071726 1.180000e-10 78.7
29 TraesCS1A01G192800 chr2D 80.583 103 14 5 2403 2499 557259390 557259492 1.520000e-09 75.0
30 TraesCS1A01G192800 chr4A 93.878 49 2 1 28 76 740471692 740471739 5.480000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G192800 chr1A 348397667 348401619 3952 True 7300.000000 7300 100.000000 1 3953 1 chr1A.!!$R2 3952
1 TraesCS1A01G192800 chr1D 275941367 275944949 3582 True 2022.500000 3365 87.565000 92 3940 2 chr1D.!!$R1 3848
2 TraesCS1A01G192800 chr1B 375255906 375259281 3375 True 1253.666667 3169 86.873667 217 3888 3 chr1B.!!$R1 3671

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
134 135 0.240945 GCACCGTGGAACATTGGAAG 59.759 55.0 0.0 0.0 44.52 3.46 F
136 137 0.251165 ACCGTGGAACATTGGAAGGG 60.251 55.0 0.0 0.0 44.52 3.95 F
137 138 0.251165 CCGTGGAACATTGGAAGGGT 60.251 55.0 0.0 0.0 44.52 4.34 F
1283 1411 0.028770 TTTTGCTTCGTCCGTGCTTG 59.971 50.0 8.3 0.0 0.00 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1010 1119 0.037447 AGAAGAAGGGGTTGCTGCTC 59.963 55.0 0.0 0.0 0.00 4.26 R
1036 1145 0.040067 CCGCACCAAGAACAAGAAGC 60.040 55.0 0.0 0.0 0.00 3.86 R
1288 1416 0.178876 TCATTCCCTCACCCCAGACA 60.179 55.0 0.0 0.0 0.00 3.41 R
3196 3362 0.102300 ATAATTTTTGCTCCCGCCGC 59.898 50.0 0.0 0.0 34.43 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.967664 TCCTTTAGCAACTAAACTCTTTTACA 57.032 30.769 0.00 0.00 33.19 2.41
28 29 8.833493 TCCTTTAGCAACTAAACTCTTTTACAC 58.167 33.333 0.00 0.00 33.19 2.90
29 30 8.074370 CCTTTAGCAACTAAACTCTTTTACACC 58.926 37.037 0.00 0.00 33.19 4.16
30 31 8.508883 TTTAGCAACTAAACTCTTTTACACCA 57.491 30.769 0.00 0.00 31.94 4.17
31 32 6.373186 AGCAACTAAACTCTTTTACACCAC 57.627 37.500 0.00 0.00 0.00 4.16
32 33 5.007332 AGCAACTAAACTCTTTTACACCACG 59.993 40.000 0.00 0.00 0.00 4.94
33 34 5.220719 GCAACTAAACTCTTTTACACCACGT 60.221 40.000 0.00 0.00 0.00 4.49
34 35 5.978934 ACTAAACTCTTTTACACCACGTG 57.021 39.130 9.08 9.08 39.75 4.49
35 36 5.663456 ACTAAACTCTTTTACACCACGTGA 58.337 37.500 19.30 0.00 36.96 4.35
36 37 6.285990 ACTAAACTCTTTTACACCACGTGAT 58.714 36.000 19.30 0.00 36.96 3.06
37 38 7.436118 ACTAAACTCTTTTACACCACGTGATA 58.564 34.615 19.30 3.45 36.96 2.15
38 39 6.535274 AAACTCTTTTACACCACGTGATAC 57.465 37.500 19.30 0.00 36.96 2.24
39 40 5.204409 ACTCTTTTACACCACGTGATACA 57.796 39.130 19.30 0.00 36.96 2.29
40 41 5.790593 ACTCTTTTACACCACGTGATACAT 58.209 37.500 19.30 0.00 36.96 2.29
41 42 5.637810 ACTCTTTTACACCACGTGATACATG 59.362 40.000 19.30 9.41 36.96 3.21
42 43 5.543714 TCTTTTACACCACGTGATACATGT 58.456 37.500 19.30 14.55 36.96 3.21
49 50 3.925688 CACGTGATACATGTGGTAAGC 57.074 47.619 10.90 0.00 44.71 3.09
50 51 3.258228 CACGTGATACATGTGGTAAGCA 58.742 45.455 10.90 0.00 44.71 3.91
51 52 3.682377 CACGTGATACATGTGGTAAGCAA 59.318 43.478 10.90 0.00 44.71 3.91
52 53 4.332543 CACGTGATACATGTGGTAAGCAAT 59.667 41.667 10.90 0.00 44.71 3.56
53 54 4.570772 ACGTGATACATGTGGTAAGCAATC 59.429 41.667 9.11 1.17 35.14 2.67
54 55 4.024893 CGTGATACATGTGGTAAGCAATCC 60.025 45.833 9.11 0.00 35.14 3.01
55 56 4.881273 GTGATACATGTGGTAAGCAATCCA 59.119 41.667 9.11 0.00 35.14 3.41
56 57 5.356751 GTGATACATGTGGTAAGCAATCCAA 59.643 40.000 9.11 0.00 35.14 3.53
57 58 5.948758 TGATACATGTGGTAAGCAATCCAAA 59.051 36.000 9.11 0.00 35.14 3.28
58 59 4.519540 ACATGTGGTAAGCAATCCAAAC 57.480 40.909 0.00 0.00 35.38 2.93
59 60 3.894427 ACATGTGGTAAGCAATCCAAACA 59.106 39.130 0.00 0.00 35.38 2.83
60 61 4.343526 ACATGTGGTAAGCAATCCAAACAA 59.656 37.500 0.00 0.00 35.38 2.83
61 62 4.314740 TGTGGTAAGCAATCCAAACAAC 57.685 40.909 0.00 0.00 35.38 3.32
62 63 3.957497 TGTGGTAAGCAATCCAAACAACT 59.043 39.130 0.00 0.00 35.38 3.16
63 64 4.037446 TGTGGTAAGCAATCCAAACAACTC 59.963 41.667 0.00 0.00 35.38 3.01
64 65 4.037446 GTGGTAAGCAATCCAAACAACTCA 59.963 41.667 0.00 0.00 35.38 3.41
65 66 4.646945 TGGTAAGCAATCCAAACAACTCAA 59.353 37.500 0.00 0.00 0.00 3.02
66 67 5.127845 TGGTAAGCAATCCAAACAACTCAAA 59.872 36.000 0.00 0.00 0.00 2.69
67 68 6.045955 GGTAAGCAATCCAAACAACTCAAAA 58.954 36.000 0.00 0.00 0.00 2.44
68 69 6.536941 GGTAAGCAATCCAAACAACTCAAAAA 59.463 34.615 0.00 0.00 0.00 1.94
107 108 9.866936 TCTTTTATGTTTACGTGACATGTTTAC 57.133 29.630 22.20 1.75 38.17 2.01
112 113 5.992829 TGTTTACGTGACATGTTTACCATCT 59.007 36.000 5.45 0.00 0.00 2.90
115 116 2.222796 CGTGACATGTTTACCATCTGCG 60.223 50.000 0.00 0.00 0.00 5.18
119 120 1.094785 ATGTTTACCATCTGCGCACC 58.905 50.000 5.66 0.00 0.00 5.01
123 124 3.657448 TACCATCTGCGCACCGTGG 62.657 63.158 22.55 22.55 36.06 4.94
128 129 2.803155 ATCTGCGCACCGTGGAACAT 62.803 55.000 5.66 0.00 44.52 2.71
130 131 2.126888 GCGCACCGTGGAACATTG 60.127 61.111 0.30 0.00 44.52 2.82
132 133 1.963855 CGCACCGTGGAACATTGGA 60.964 57.895 0.00 0.00 44.52 3.53
134 135 0.240945 GCACCGTGGAACATTGGAAG 59.759 55.000 0.00 0.00 44.52 3.46
136 137 0.251165 ACCGTGGAACATTGGAAGGG 60.251 55.000 0.00 0.00 44.52 3.95
137 138 0.251165 CCGTGGAACATTGGAAGGGT 60.251 55.000 0.00 0.00 44.52 4.34
138 139 1.165270 CGTGGAACATTGGAAGGGTC 58.835 55.000 0.00 0.00 44.52 4.46
139 140 1.271379 CGTGGAACATTGGAAGGGTCT 60.271 52.381 0.00 0.00 44.52 3.85
140 141 2.162681 GTGGAACATTGGAAGGGTCTG 58.837 52.381 0.00 0.00 44.52 3.51
142 143 2.224769 TGGAACATTGGAAGGGTCTGAC 60.225 50.000 0.00 0.00 0.00 3.51
143 144 2.076863 GAACATTGGAAGGGTCTGACG 58.923 52.381 1.07 0.00 0.00 4.35
144 145 0.321653 ACATTGGAAGGGTCTGACGC 60.322 55.000 16.20 16.20 0.00 5.19
145 146 1.079127 ATTGGAAGGGTCTGACGCG 60.079 57.895 17.61 3.53 36.04 6.01
146 147 3.876589 TTGGAAGGGTCTGACGCGC 62.877 63.158 17.61 13.79 36.04 6.86
148 149 4.415332 GAAGGGTCTGACGCGCGA 62.415 66.667 39.36 14.99 36.04 5.87
149 150 3.909258 GAAGGGTCTGACGCGCGAA 62.909 63.158 39.36 22.82 36.04 4.70
161 166 1.511768 GCGCGAAACTCTACTCCCT 59.488 57.895 12.10 0.00 0.00 4.20
179 184 1.001048 CCTGCACACACACAAATGAGG 60.001 52.381 0.00 0.00 0.00 3.86
182 187 2.221169 GCACACACACAAATGAGGAGA 58.779 47.619 0.00 0.00 0.00 3.71
185 190 3.879295 CACACACACAAATGAGGAGACTT 59.121 43.478 0.00 0.00 44.43 3.01
192 197 4.003648 ACAAATGAGGAGACTTTTAGCCG 58.996 43.478 0.00 0.00 44.43 5.52
197 202 4.021229 TGAGGAGACTTTTAGCCGTCATA 58.979 43.478 0.00 0.00 44.43 2.15
204 209 4.819769 ACTTTTAGCCGTCATAAACCGTA 58.180 39.130 0.00 0.00 0.00 4.02
256 261 7.227461 CAGCCGTGACATATATTTATTCGAAC 58.773 38.462 0.00 0.00 0.00 3.95
266 271 9.155975 CATATATTTATTCGAACTGGCTTAGCT 57.844 33.333 0.00 0.00 0.00 3.32
333 338 2.604174 AAAGAGAAACGCGCCGTGG 61.604 57.895 5.73 0.00 39.99 4.94
334 339 2.981977 AAAGAGAAACGCGCCGTGGA 62.982 55.000 5.73 0.00 39.99 4.02
335 340 3.479269 GAGAAACGCGCCGTGGAG 61.479 66.667 5.73 0.00 39.99 3.86
351 356 0.682292 GGAGGAGCCAGCACTATACC 59.318 60.000 0.00 0.00 36.34 2.73
389 395 0.883833 GCATCAGGACCACCACAAAG 59.116 55.000 0.00 0.00 38.94 2.77
429 436 2.295885 CTCAATCAGATCAAGTGGGGC 58.704 52.381 0.00 0.00 0.00 5.80
440 447 3.068064 GTGGGGCGGGGTGAAATG 61.068 66.667 0.00 0.00 0.00 2.32
485 492 3.189010 GAACACGTGCCCAAACCCG 62.189 63.158 17.22 0.00 0.00 5.28
488 495 4.941309 ACGTGCCCAAACCCGGAC 62.941 66.667 0.73 0.00 0.00 4.79
544 573 1.376543 CTGCATTTCGCTCAGACCAT 58.623 50.000 0.00 0.00 43.06 3.55
588 617 9.472361 CAGGAGGCTTAATTAATCAATCAATTG 57.528 33.333 0.00 0.00 39.10 2.32
622 651 4.396166 CACTTCGCTTTCAATCCCTGTTAT 59.604 41.667 0.00 0.00 0.00 1.89
623 652 5.010282 ACTTCGCTTTCAATCCCTGTTATT 58.990 37.500 0.00 0.00 0.00 1.40
624 653 6.093495 CACTTCGCTTTCAATCCCTGTTATTA 59.907 38.462 0.00 0.00 0.00 0.98
625 654 6.828785 ACTTCGCTTTCAATCCCTGTTATTAT 59.171 34.615 0.00 0.00 0.00 1.28
640 669 8.783093 CCCTGTTATTATTAATCAAATGCGAGA 58.217 33.333 0.00 0.00 0.00 4.04
731 773 1.602771 GGGTTTAGGAAGAGCGGCT 59.397 57.895 0.00 0.00 0.00 5.52
738 804 2.501610 GAAGAGCGGCTACCAGGG 59.498 66.667 0.60 0.00 0.00 4.45
802 868 0.674534 GGACGACTGACTGACTTGGT 59.325 55.000 0.00 0.00 0.00 3.67
845 920 2.044620 AGACCCCTCCCATTCCCC 59.955 66.667 0.00 0.00 0.00 4.81
847 922 2.287194 ACCCCTCCCATTCCCCTG 60.287 66.667 0.00 0.00 0.00 4.45
873 960 1.483827 CCGTTCTACTAAACCCCTCCC 59.516 57.143 0.00 0.00 0.00 4.30
874 961 2.464782 CGTTCTACTAAACCCCTCCCT 58.535 52.381 0.00 0.00 0.00 4.20
875 962 2.429971 CGTTCTACTAAACCCCTCCCTC 59.570 54.545 0.00 0.00 0.00 4.30
876 963 2.770802 GTTCTACTAAACCCCTCCCTCC 59.229 54.545 0.00 0.00 0.00 4.30
877 964 1.063417 TCTACTAAACCCCTCCCTCCG 60.063 57.143 0.00 0.00 0.00 4.63
908 1013 4.554036 GACTCCCAGCCCATCCGC 62.554 72.222 0.00 0.00 0.00 5.54
928 1037 2.271800 CCCATATATCGCTTCTTCCGC 58.728 52.381 0.00 0.00 0.00 5.54
929 1038 2.271800 CCATATATCGCTTCTTCCGCC 58.728 52.381 0.00 0.00 0.00 6.13
930 1039 1.920574 CATATATCGCTTCTTCCGCCG 59.079 52.381 0.00 0.00 0.00 6.46
931 1040 0.388134 TATATCGCTTCTTCCGCCGC 60.388 55.000 0.00 0.00 0.00 6.53
932 1041 2.088674 ATATCGCTTCTTCCGCCGCT 62.089 55.000 0.00 0.00 0.00 5.52
1008 1117 3.650950 GAGGCCCCAGCAGGACAA 61.651 66.667 0.00 0.00 42.56 3.18
1009 1118 3.635268 GAGGCCCCAGCAGGACAAG 62.635 68.421 0.00 0.00 42.56 3.16
1010 1119 4.748144 GGCCCCAGCAGGACAAGG 62.748 72.222 0.00 0.00 42.56 3.61
1036 1145 2.157738 CAACCCCTTCTTCTGCTTCTG 58.842 52.381 0.00 0.00 0.00 3.02
1037 1146 0.037447 ACCCCTTCTTCTGCTTCTGC 59.963 55.000 0.00 0.00 40.20 4.26
1046 1155 3.812053 TCTTCTGCTTCTGCTTCTTGTTC 59.188 43.478 0.00 0.00 40.48 3.18
1145 1254 6.570672 CAGGAGGATCATGGTAATTGATTG 57.429 41.667 0.00 0.00 44.40 2.67
1147 1256 6.946583 CAGGAGGATCATGGTAATTGATTGAT 59.053 38.462 0.00 0.00 44.40 2.57
1148 1257 7.450634 CAGGAGGATCATGGTAATTGATTGATT 59.549 37.037 0.00 0.00 44.40 2.57
1149 1258 8.672329 AGGAGGATCATGGTAATTGATTGATTA 58.328 33.333 0.00 0.00 36.25 1.75
1150 1259 8.954350 GGAGGATCATGGTAATTGATTGATTAG 58.046 37.037 0.00 0.00 36.25 1.73
1162 1271 1.681229 TTGATTAGCCCACCCTCCTT 58.319 50.000 0.00 0.00 0.00 3.36
1167 1277 2.547123 TAGCCCACCCTCCTTCCCTC 62.547 65.000 0.00 0.00 0.00 4.30
1168 1278 2.456840 CCCACCCTCCTTCCCTCT 59.543 66.667 0.00 0.00 0.00 3.69
1175 1285 0.189822 CCTCCTTCCCTCTCCCCTAG 59.810 65.000 0.00 0.00 0.00 3.02
1178 1288 0.762461 CCTTCCCTCTCCCCTAGCTG 60.762 65.000 0.00 0.00 0.00 4.24
1179 1289 1.383248 TTCCCTCTCCCCTAGCTGC 60.383 63.158 0.00 0.00 0.00 5.25
1180 1290 1.891296 TTCCCTCTCCCCTAGCTGCT 61.891 60.000 7.57 7.57 0.00 4.24
1181 1291 0.999493 TCCCTCTCCCCTAGCTGCTA 60.999 60.000 9.34 9.34 0.00 3.49
1182 1292 0.830023 CCCTCTCCCCTAGCTGCTAC 60.830 65.000 5.02 0.00 0.00 3.58
1183 1293 0.830023 CCTCTCCCCTAGCTGCTACC 60.830 65.000 5.02 0.00 0.00 3.18
1188 1298 2.026301 CCTAGCTGCTACCGCGAC 59.974 66.667 8.23 0.00 39.65 5.19
1278 1406 2.538132 CGTTTCTTTTTGCTTCGTCCGT 60.538 45.455 0.00 0.00 0.00 4.69
1279 1407 2.748461 TTCTTTTTGCTTCGTCCGTG 57.252 45.000 0.00 0.00 0.00 4.94
1280 1408 0.306533 TCTTTTTGCTTCGTCCGTGC 59.693 50.000 0.00 0.00 0.00 5.34
1281 1409 0.307760 CTTTTTGCTTCGTCCGTGCT 59.692 50.000 8.30 0.00 0.00 4.40
1282 1410 0.736053 TTTTTGCTTCGTCCGTGCTT 59.264 45.000 8.30 0.00 0.00 3.91
1283 1411 0.028770 TTTTGCTTCGTCCGTGCTTG 59.971 50.000 8.30 0.00 0.00 4.01
1284 1412 2.387125 TTTGCTTCGTCCGTGCTTGC 62.387 55.000 8.30 0.00 0.00 4.01
1285 1413 3.044305 GCTTCGTCCGTGCTTGCT 61.044 61.111 0.00 0.00 0.00 3.91
1286 1414 2.856032 CTTCGTCCGTGCTTGCTG 59.144 61.111 0.00 0.00 0.00 4.41
1287 1415 3.300667 CTTCGTCCGTGCTTGCTGC 62.301 63.158 0.00 0.00 43.25 5.25
1288 1416 3.807631 TTCGTCCGTGCTTGCTGCT 62.808 57.895 0.00 0.00 43.37 4.24
1289 1417 4.081030 CGTCCGTGCTTGCTGCTG 62.081 66.667 0.00 0.00 43.37 4.41
1290 1418 2.974698 GTCCGTGCTTGCTGCTGT 60.975 61.111 0.00 0.00 43.37 4.40
1291 1419 2.666190 TCCGTGCTTGCTGCTGTC 60.666 61.111 0.00 0.00 43.37 3.51
1292 1420 2.667536 CCGTGCTTGCTGCTGTCT 60.668 61.111 0.00 0.00 43.37 3.41
1293 1421 2.554775 CGTGCTTGCTGCTGTCTG 59.445 61.111 0.00 0.00 43.37 3.51
1299 1427 2.401699 CTTGCTGCTGTCTGGGGTGA 62.402 60.000 0.00 0.00 0.00 4.02
1300 1428 2.046507 GCTGCTGTCTGGGGTGAG 60.047 66.667 0.00 0.00 0.00 3.51
1308 1436 0.543749 GTCTGGGGTGAGGGAATGAG 59.456 60.000 0.00 0.00 0.00 2.90
1322 1450 1.075536 GAATGAGGGGGAACTGGTTGT 59.924 52.381 0.00 0.00 0.00 3.32
1356 1492 2.502510 GCGTGCGGATTGCTGTTG 60.503 61.111 0.00 0.00 46.63 3.33
1360 1496 2.180017 GCGGATTGCTGTTGCTGG 59.820 61.111 0.00 0.00 41.73 4.85
1367 1503 4.353437 GCTGTTGCTGGTGCTGCC 62.353 66.667 0.00 0.00 40.48 4.85
1386 1522 1.218316 GGAGCGGGATCAGTTCGTT 59.782 57.895 0.00 0.00 0.00 3.85
1387 1523 0.806492 GGAGCGGGATCAGTTCGTTC 60.806 60.000 0.00 0.57 34.30 3.95
1398 1534 1.126846 CAGTTCGTTCGTCAATCCTGC 59.873 52.381 0.00 0.00 0.00 4.85
1430 1566 4.460382 ACGGTCAAAGCATTGATTGATTCT 59.540 37.500 7.74 0.00 46.67 2.40
1443 1579 6.387192 TGATTGATTCTTGAGGTTTCCCTA 57.613 37.500 0.00 0.00 42.86 3.53
1503 1644 3.023832 CCCCTGATTAATGGTGGTGTTC 58.976 50.000 0.00 0.00 0.00 3.18
1506 1647 3.947834 CCTGATTAATGGTGGTGTTCCTC 59.052 47.826 0.00 0.00 34.23 3.71
1560 1706 1.141665 GGATGCGTTGGGATTTGGC 59.858 57.895 0.00 0.00 0.00 4.52
1570 1720 0.681243 GGGATTTGGCACCAGTCCTC 60.681 60.000 17.60 8.51 34.82 3.71
1597 1747 8.335356 GCCTTTATGTTTTCTTTTGTTTCTTCC 58.665 33.333 0.00 0.00 0.00 3.46
1598 1748 9.599866 CCTTTATGTTTTCTTTTGTTTCTTCCT 57.400 29.630 0.00 0.00 0.00 3.36
1603 1753 8.894768 TGTTTTCTTTTGTTTCTTCCTTTTGA 57.105 26.923 0.00 0.00 0.00 2.69
1617 1767 9.745018 TTCTTCCTTTTGATTGATTGATAGAGT 57.255 29.630 0.00 0.00 0.00 3.24
1630 1784 6.937465 TGATTGATAGAGTACTCGCACTAGAT 59.063 38.462 17.07 7.43 34.09 1.98
1631 1785 7.445707 TGATTGATAGAGTACTCGCACTAGATT 59.554 37.037 17.07 0.00 34.09 2.40
1632 1786 6.546972 TGATAGAGTACTCGCACTAGATTG 57.453 41.667 17.07 0.00 34.09 2.67
1633 1787 6.056236 TGATAGAGTACTCGCACTAGATTGT 58.944 40.000 17.07 0.00 34.09 2.71
1720 1885 1.214367 TCGCTGGACGTTTCTTGTTC 58.786 50.000 0.00 0.00 44.19 3.18
1736 1901 7.873719 TTCTTGTTCAACTGACCAATCTTTA 57.126 32.000 0.00 0.00 0.00 1.85
1737 1902 8.463930 TTCTTGTTCAACTGACCAATCTTTAT 57.536 30.769 0.00 0.00 0.00 1.40
1749 1914 6.549364 TGACCAATCTTTATCTTGTGGTTGTT 59.451 34.615 0.00 0.00 39.44 2.83
2268 2433 4.020617 CCCTCGGCTGCAAGGTCA 62.021 66.667 16.25 0.00 0.00 4.02
2309 2474 3.423154 GGCAACGACAAGGCGAGG 61.423 66.667 0.66 0.00 34.83 4.63
2310 2475 2.357034 GCAACGACAAGGCGAGGA 60.357 61.111 0.66 0.00 34.83 3.71
2311 2476 2.668280 GCAACGACAAGGCGAGGAC 61.668 63.158 0.66 0.00 34.83 3.85
2360 2525 1.153939 CAAGGGCTCGTCAGACTCG 60.154 63.158 0.00 0.00 0.00 4.18
2384 2549 2.123033 GCCTCCTCCTCCTCTCCC 60.123 72.222 0.00 0.00 0.00 4.30
2518 2683 4.958396 CGACTACTAGGCGGCGCG 62.958 72.222 26.95 15.00 44.58 6.86
2714 2879 2.378038 TGGAAGCACAGCTGAAAAAGT 58.622 42.857 23.35 0.00 39.62 2.66
2731 2896 6.040054 TGAAAAAGTACCAGCCTTTTCTTACC 59.960 38.462 7.43 0.00 40.32 2.85
2745 2910 7.173390 GCCTTTTCTTACCGCTTATAATCATCT 59.827 37.037 0.00 0.00 0.00 2.90
2748 2913 9.832445 TTTTCTTACCGCTTATAATCATCTTCT 57.168 29.630 0.00 0.00 0.00 2.85
2755 2920 8.099537 ACCGCTTATAATCATCTTCTTCATCAT 58.900 33.333 0.00 0.00 0.00 2.45
2756 2921 8.602328 CCGCTTATAATCATCTTCTTCATCATC 58.398 37.037 0.00 0.00 0.00 2.92
2757 2922 9.148104 CGCTTATAATCATCTTCTTCATCATCA 57.852 33.333 0.00 0.00 0.00 3.07
2763 2928 7.835634 ATCATCTTCTTCATCATCATCATCG 57.164 36.000 0.00 0.00 0.00 3.84
2764 2929 6.756221 TCATCTTCTTCATCATCATCATCGT 58.244 36.000 0.00 0.00 0.00 3.73
2765 2930 6.867293 TCATCTTCTTCATCATCATCATCGTC 59.133 38.462 0.00 0.00 0.00 4.20
2766 2931 6.152932 TCTTCTTCATCATCATCATCGTCA 57.847 37.500 0.00 0.00 0.00 4.35
2807 2972 6.620877 AATTACCACACCACAGAGAGATTA 57.379 37.500 0.00 0.00 0.00 1.75
2808 2973 6.814954 ATTACCACACCACAGAGAGATTAT 57.185 37.500 0.00 0.00 0.00 1.28
2809 2974 6.620877 TTACCACACCACAGAGAGATTATT 57.379 37.500 0.00 0.00 0.00 1.40
2812 2977 5.483937 ACCACACCACAGAGAGATTATTACA 59.516 40.000 0.00 0.00 0.00 2.41
2840 3005 3.578716 TGATTATGGCCCTGCTCTACTAC 59.421 47.826 0.00 0.00 0.00 2.73
2842 3007 4.464652 TTATGGCCCTGCTCTACTACTA 57.535 45.455 0.00 0.00 0.00 1.82
2843 3008 3.551635 ATGGCCCTGCTCTACTACTAT 57.448 47.619 0.00 0.00 0.00 2.12
2845 3010 3.654273 TGGCCCTGCTCTACTACTATTT 58.346 45.455 0.00 0.00 0.00 1.40
2846 3011 3.641906 TGGCCCTGCTCTACTACTATTTC 59.358 47.826 0.00 0.00 0.00 2.17
2847 3012 3.898741 GGCCCTGCTCTACTACTATTTCT 59.101 47.826 0.00 0.00 0.00 2.52
2848 3013 5.078256 GGCCCTGCTCTACTACTATTTCTA 58.922 45.833 0.00 0.00 0.00 2.10
2849 3014 5.047872 GGCCCTGCTCTACTACTATTTCTAC 60.048 48.000 0.00 0.00 0.00 2.59
2850 3015 5.047872 GCCCTGCTCTACTACTATTTCTACC 60.048 48.000 0.00 0.00 0.00 3.18
2885 3050 9.736023 AGACTTGAGTTTTGTGATAAATGTTTC 57.264 29.630 0.00 0.00 0.00 2.78
2940 3105 4.439016 GCTAGCTAGCTAGGGTAATAAGCG 60.439 50.000 39.60 19.99 45.62 4.68
3012 3177 3.853355 AAATATGGAGTGCTGGGAGAG 57.147 47.619 0.00 0.00 0.00 3.20
3013 3178 1.727062 ATATGGAGTGCTGGGAGAGG 58.273 55.000 0.00 0.00 0.00 3.69
3014 3179 0.636647 TATGGAGTGCTGGGAGAGGA 59.363 55.000 0.00 0.00 0.00 3.71
3015 3180 0.030297 ATGGAGTGCTGGGAGAGGAT 60.030 55.000 0.00 0.00 0.00 3.24
3019 3184 0.980231 AGTGCTGGGAGAGGATGGAC 60.980 60.000 0.00 0.00 0.00 4.02
3069 3234 4.378874 GCTCAACCTTCAATCTTCTTTCCG 60.379 45.833 0.00 0.00 0.00 4.30
3080 3245 3.934068 TCTTCTTTCCGTATGGGTCAAC 58.066 45.455 0.00 0.00 37.00 3.18
3082 3247 1.619827 TCTTTCCGTATGGGTCAACGT 59.380 47.619 0.00 0.00 37.40 3.99
3086 3251 0.528924 CCGTATGGGTCAACGTCTGA 59.471 55.000 0.00 0.00 37.40 3.27
3092 3258 1.967779 TGGGTCAACGTCTGATTCTGA 59.032 47.619 0.00 0.00 36.14 3.27
3096 3262 4.142816 GGGTCAACGTCTGATTCTGAATTG 60.143 45.833 4.11 10.30 36.14 2.32
3129 3295 8.044574 TCATCATTATTACTCCCTTCATTCCA 57.955 34.615 0.00 0.00 0.00 3.53
3130 3296 7.939039 TCATCATTATTACTCCCTTCATTCCAC 59.061 37.037 0.00 0.00 0.00 4.02
3131 3297 7.206789 TCATTATTACTCCCTTCATTCCACA 57.793 36.000 0.00 0.00 0.00 4.17
3132 3298 7.638444 TCATTATTACTCCCTTCATTCCACAA 58.362 34.615 0.00 0.00 0.00 3.33
3133 3299 8.281531 TCATTATTACTCCCTTCATTCCACAAT 58.718 33.333 0.00 0.00 0.00 2.71
3134 3300 7.880160 TTATTACTCCCTTCATTCCACAATG 57.120 36.000 0.00 0.00 40.91 2.82
3135 3301 3.814504 ACTCCCTTCATTCCACAATGT 57.185 42.857 0.00 0.00 40.47 2.71
3136 3302 4.927267 ACTCCCTTCATTCCACAATGTA 57.073 40.909 0.00 0.00 40.47 2.29
3137 3303 4.848357 ACTCCCTTCATTCCACAATGTAG 58.152 43.478 0.00 0.00 40.47 2.74
3138 3304 4.289672 ACTCCCTTCATTCCACAATGTAGT 59.710 41.667 0.00 0.00 40.47 2.73
3139 3305 4.588899 TCCCTTCATTCCACAATGTAGTG 58.411 43.478 0.00 0.00 40.47 2.74
3140 3306 3.129287 CCCTTCATTCCACAATGTAGTGC 59.871 47.826 0.00 0.00 40.47 4.40
3141 3307 4.012374 CCTTCATTCCACAATGTAGTGCT 58.988 43.478 0.00 0.00 40.47 4.40
3142 3308 4.460382 CCTTCATTCCACAATGTAGTGCTT 59.540 41.667 0.00 0.00 40.47 3.91
3143 3309 5.392380 CCTTCATTCCACAATGTAGTGCTTC 60.392 44.000 0.00 0.00 40.47 3.86
3144 3310 4.009675 TCATTCCACAATGTAGTGCTTCC 58.990 43.478 0.00 0.00 40.47 3.46
3145 3311 3.788227 TTCCACAATGTAGTGCTTCCT 57.212 42.857 0.00 0.00 38.18 3.36
3146 3312 3.788227 TCCACAATGTAGTGCTTCCTT 57.212 42.857 0.00 0.00 38.18 3.36
3147 3313 4.098914 TCCACAATGTAGTGCTTCCTTT 57.901 40.909 0.00 0.00 38.18 3.11
3148 3314 5.235850 TCCACAATGTAGTGCTTCCTTTA 57.764 39.130 0.00 0.00 38.18 1.85
3149 3315 5.815581 TCCACAATGTAGTGCTTCCTTTAT 58.184 37.500 0.00 0.00 38.18 1.40
3150 3316 5.880332 TCCACAATGTAGTGCTTCCTTTATC 59.120 40.000 0.00 0.00 38.18 1.75
3151 3317 5.066505 CCACAATGTAGTGCTTCCTTTATCC 59.933 44.000 0.00 0.00 38.18 2.59
3152 3318 5.882557 CACAATGTAGTGCTTCCTTTATCCT 59.117 40.000 0.00 0.00 32.04 3.24
3153 3319 6.037610 CACAATGTAGTGCTTCCTTTATCCTC 59.962 42.308 0.00 0.00 32.04 3.71
3154 3320 4.386867 TGTAGTGCTTCCTTTATCCTCG 57.613 45.455 0.00 0.00 0.00 4.63
3155 3321 3.767673 TGTAGTGCTTCCTTTATCCTCGT 59.232 43.478 0.00 0.00 0.00 4.18
3156 3322 3.252974 AGTGCTTCCTTTATCCTCGTG 57.747 47.619 0.00 0.00 0.00 4.35
3157 3323 2.567615 AGTGCTTCCTTTATCCTCGTGT 59.432 45.455 0.00 0.00 0.00 4.49
3158 3324 3.008049 AGTGCTTCCTTTATCCTCGTGTT 59.992 43.478 0.00 0.00 0.00 3.32
3159 3325 3.751698 GTGCTTCCTTTATCCTCGTGTTT 59.248 43.478 0.00 0.00 0.00 2.83
3160 3326 4.000988 TGCTTCCTTTATCCTCGTGTTTC 58.999 43.478 0.00 0.00 0.00 2.78
3161 3327 4.000988 GCTTCCTTTATCCTCGTGTTTCA 58.999 43.478 0.00 0.00 0.00 2.69
3162 3328 4.454504 GCTTCCTTTATCCTCGTGTTTCAA 59.545 41.667 0.00 0.00 0.00 2.69
3163 3329 5.390991 GCTTCCTTTATCCTCGTGTTTCAAG 60.391 44.000 0.00 0.00 0.00 3.02
3164 3330 5.223449 TCCTTTATCCTCGTGTTTCAAGT 57.777 39.130 0.00 0.00 0.00 3.16
3165 3331 5.617252 TCCTTTATCCTCGTGTTTCAAGTT 58.383 37.500 0.00 0.00 0.00 2.66
3166 3332 6.059484 TCCTTTATCCTCGTGTTTCAAGTTT 58.941 36.000 0.00 0.00 0.00 2.66
3167 3333 6.017440 TCCTTTATCCTCGTGTTTCAAGTTTG 60.017 38.462 0.00 0.00 0.00 2.93
3168 3334 6.017440 CCTTTATCCTCGTGTTTCAAGTTTGA 60.017 38.462 0.00 0.00 34.92 2.69
3169 3335 4.813296 ATCCTCGTGTTTCAAGTTTGAC 57.187 40.909 0.00 0.00 36.83 3.18
3170 3336 2.940410 TCCTCGTGTTTCAAGTTTGACC 59.060 45.455 0.00 0.00 36.83 4.02
3171 3337 2.286184 CCTCGTGTTTCAAGTTTGACCG 60.286 50.000 0.00 0.00 36.83 4.79
3172 3338 2.348660 TCGTGTTTCAAGTTTGACCGT 58.651 42.857 0.00 0.00 36.83 4.83
3173 3339 3.519579 TCGTGTTTCAAGTTTGACCGTA 58.480 40.909 0.00 0.00 36.83 4.02
3174 3340 3.931468 TCGTGTTTCAAGTTTGACCGTAA 59.069 39.130 0.00 0.00 36.83 3.18
3175 3341 4.023783 CGTGTTTCAAGTTTGACCGTAAC 58.976 43.478 0.00 0.00 36.83 2.50
3176 3342 4.201744 CGTGTTTCAAGTTTGACCGTAACT 60.202 41.667 8.01 0.00 36.83 2.24
3177 3343 5.633927 GTGTTTCAAGTTTGACCGTAACTT 58.366 37.500 0.00 0.00 44.38 2.66
3178 3344 6.088173 GTGTTTCAAGTTTGACCGTAACTTT 58.912 36.000 0.00 0.00 42.32 2.66
3179 3345 7.242783 GTGTTTCAAGTTTGACCGTAACTTTA 58.757 34.615 0.00 0.00 42.32 1.85
3180 3346 7.750014 GTGTTTCAAGTTTGACCGTAACTTTAA 59.250 33.333 0.00 0.00 42.32 1.52
3181 3347 7.750014 TGTTTCAAGTTTGACCGTAACTTTAAC 59.250 33.333 0.00 0.00 42.32 2.01
3182 3348 7.614124 TTCAAGTTTGACCGTAACTTTAACT 57.386 32.000 0.00 0.00 42.32 2.24
3183 3349 8.715191 TTCAAGTTTGACCGTAACTTTAACTA 57.285 30.769 0.00 0.00 42.32 2.24
3184 3350 8.891671 TCAAGTTTGACCGTAACTTTAACTAT 57.108 30.769 0.00 0.00 42.32 2.12
3185 3351 8.981647 TCAAGTTTGACCGTAACTTTAACTATC 58.018 33.333 0.00 0.00 42.32 2.08
3186 3352 8.767085 CAAGTTTGACCGTAACTTTAACTATCA 58.233 33.333 0.00 0.00 42.32 2.15
3187 3353 8.891671 AGTTTGACCGTAACTTTAACTATCAA 57.108 30.769 0.00 0.00 32.06 2.57
3188 3354 8.985805 AGTTTGACCGTAACTTTAACTATCAAG 58.014 33.333 0.00 0.00 32.06 3.02
3189 3355 8.981647 GTTTGACCGTAACTTTAACTATCAAGA 58.018 33.333 0.00 0.00 0.00 3.02
3190 3356 8.524870 TTGACCGTAACTTTAACTATCAAGAC 57.475 34.615 0.00 0.00 0.00 3.01
3191 3357 7.092716 TGACCGTAACTTTAACTATCAAGACC 58.907 38.462 0.00 0.00 0.00 3.85
3192 3358 6.095377 ACCGTAACTTTAACTATCAAGACCG 58.905 40.000 0.00 0.00 0.00 4.79
3193 3359 6.071952 ACCGTAACTTTAACTATCAAGACCGA 60.072 38.462 0.00 0.00 0.00 4.69
3194 3360 6.976925 CCGTAACTTTAACTATCAAGACCGAT 59.023 38.462 0.00 0.00 0.00 4.18
3195 3361 7.490402 CCGTAACTTTAACTATCAAGACCGATT 59.510 37.037 0.00 0.00 0.00 3.34
3196 3362 8.318876 CGTAACTTTAACTATCAAGACCGATTG 58.681 37.037 0.00 0.00 0.00 2.67
3197 3363 6.663944 ACTTTAACTATCAAGACCGATTGC 57.336 37.500 0.00 0.00 0.00 3.56
3198 3364 5.291128 ACTTTAACTATCAAGACCGATTGCG 59.709 40.000 0.00 0.00 37.24 4.85
3223 3389 6.618287 CGGGAGCAAAAATTATATCAGTGA 57.382 37.500 0.00 0.00 0.00 3.41
3224 3390 7.026631 CGGGAGCAAAAATTATATCAGTGAA 57.973 36.000 0.00 0.00 0.00 3.18
3225 3391 7.651808 CGGGAGCAAAAATTATATCAGTGAAT 58.348 34.615 0.00 0.00 0.00 2.57
3226 3392 8.137437 CGGGAGCAAAAATTATATCAGTGAATT 58.863 33.333 0.00 0.00 0.00 2.17
3227 3393 9.468532 GGGAGCAAAAATTATATCAGTGAATTC 57.531 33.333 0.00 0.00 0.00 2.17
3228 3394 9.173939 GGAGCAAAAATTATATCAGTGAATTCG 57.826 33.333 0.00 0.00 0.00 3.34
3229 3395 9.722056 GAGCAAAAATTATATCAGTGAATTCGT 57.278 29.630 0.00 0.00 0.00 3.85
3242 3408 8.378172 TCAGTGAATTCGTATTTGAAAGAAGT 57.622 30.769 0.04 0.00 0.00 3.01
3243 3409 8.836413 TCAGTGAATTCGTATTTGAAAGAAGTT 58.164 29.630 0.04 0.00 0.00 2.66
3244 3410 9.450807 CAGTGAATTCGTATTTGAAAGAAGTTT 57.549 29.630 0.04 0.00 0.00 2.66
3276 3442 3.350377 TTTTTCTCCCGCCGCTTG 58.650 55.556 0.00 0.00 0.00 4.01
3277 3443 2.265182 TTTTTCTCCCGCCGCTTGG 61.265 57.895 0.00 0.00 0.00 3.61
3278 3444 2.969300 TTTTTCTCCCGCCGCTTGGT 62.969 55.000 0.00 0.00 34.16 3.67
3279 3445 3.894547 TTTCTCCCGCCGCTTGGTC 62.895 63.158 0.00 0.00 34.16 4.02
3281 3447 4.821589 CTCCCGCCGCTTGGTCTC 62.822 72.222 0.00 0.00 34.16 3.36
3285 3451 3.777925 CGCCGCTTGGTCTCGTTG 61.778 66.667 0.00 0.00 34.16 4.10
3286 3452 3.423154 GCCGCTTGGTCTCGTTGG 61.423 66.667 0.00 0.00 34.16 3.77
3287 3453 2.030562 CCGCTTGGTCTCGTTGGT 59.969 61.111 0.00 0.00 0.00 3.67
3288 3454 1.597027 CCGCTTGGTCTCGTTGGTT 60.597 57.895 0.00 0.00 0.00 3.67
3289 3455 0.320073 CCGCTTGGTCTCGTTGGTTA 60.320 55.000 0.00 0.00 0.00 2.85
3290 3456 1.504359 CGCTTGGTCTCGTTGGTTAA 58.496 50.000 0.00 0.00 0.00 2.01
3291 3457 1.868498 CGCTTGGTCTCGTTGGTTAAA 59.132 47.619 0.00 0.00 0.00 1.52
3292 3458 2.482721 CGCTTGGTCTCGTTGGTTAAAT 59.517 45.455 0.00 0.00 0.00 1.40
3293 3459 3.058501 CGCTTGGTCTCGTTGGTTAAATT 60.059 43.478 0.00 0.00 0.00 1.82
3294 3460 4.555906 CGCTTGGTCTCGTTGGTTAAATTT 60.556 41.667 0.00 0.00 0.00 1.82
3295 3461 5.334260 CGCTTGGTCTCGTTGGTTAAATTTA 60.334 40.000 0.00 0.00 0.00 1.40
3296 3462 6.617879 GCTTGGTCTCGTTGGTTAAATTTAT 58.382 36.000 0.00 0.00 0.00 1.40
3297 3463 7.088272 GCTTGGTCTCGTTGGTTAAATTTATT 58.912 34.615 0.00 0.00 0.00 1.40
3298 3464 7.061789 GCTTGGTCTCGTTGGTTAAATTTATTG 59.938 37.037 0.00 0.00 0.00 1.90
3299 3465 7.513371 TGGTCTCGTTGGTTAAATTTATTGT 57.487 32.000 0.00 0.00 0.00 2.71
3300 3466 7.586747 TGGTCTCGTTGGTTAAATTTATTGTC 58.413 34.615 0.00 0.00 0.00 3.18
3301 3467 7.228906 TGGTCTCGTTGGTTAAATTTATTGTCA 59.771 33.333 0.00 0.00 0.00 3.58
3302 3468 8.077386 GGTCTCGTTGGTTAAATTTATTGTCAA 58.923 33.333 0.00 0.00 0.00 3.18
3303 3469 9.453325 GTCTCGTTGGTTAAATTTATTGTCAAA 57.547 29.630 0.00 0.00 0.00 2.69
3320 3486 6.660887 TGTCAAAATTGAACCTTGAAAAGC 57.339 33.333 0.00 0.00 40.01 3.51
3321 3487 5.290643 TGTCAAAATTGAACCTTGAAAAGCG 59.709 36.000 0.00 0.00 40.01 4.68
3322 3488 5.290885 GTCAAAATTGAACCTTGAAAAGCGT 59.709 36.000 0.00 0.00 40.01 5.07
3323 3489 5.290643 TCAAAATTGAACCTTGAAAAGCGTG 59.709 36.000 0.00 0.00 37.09 5.34
3324 3490 2.861462 TTGAACCTTGAAAAGCGTGG 57.139 45.000 0.00 0.00 44.44 4.94
3325 3491 2.045561 TGAACCTTGAAAAGCGTGGA 57.954 45.000 0.00 0.00 44.44 4.02
3326 3492 1.673920 TGAACCTTGAAAAGCGTGGAC 59.326 47.619 0.00 0.00 44.44 4.02
3327 3493 0.661020 AACCTTGAAAAGCGTGGACG 59.339 50.000 0.00 0.00 44.44 4.79
3341 3507 4.850859 CGTGGACGCACTATATTTTGAA 57.149 40.909 0.00 0.00 0.00 2.69
3342 3508 5.211266 CGTGGACGCACTATATTTTGAAA 57.789 39.130 0.00 0.00 0.00 2.69
3343 3509 5.806286 CGTGGACGCACTATATTTTGAAAT 58.194 37.500 0.00 0.00 0.00 2.17
3344 3510 5.676744 CGTGGACGCACTATATTTTGAAATG 59.323 40.000 0.00 0.00 0.00 2.32
3345 3511 5.971202 GTGGACGCACTATATTTTGAAATGG 59.029 40.000 0.00 0.00 0.00 3.16
3346 3512 5.883115 TGGACGCACTATATTTTGAAATGGA 59.117 36.000 0.00 0.00 0.00 3.41
3347 3513 6.038161 TGGACGCACTATATTTTGAAATGGAG 59.962 38.462 0.00 0.06 0.00 3.86
3348 3514 6.377327 ACGCACTATATTTTGAAATGGAGG 57.623 37.500 0.00 0.00 0.00 4.30
3349 3515 6.119536 ACGCACTATATTTTGAAATGGAGGA 58.880 36.000 0.00 0.00 0.00 3.71
3350 3516 6.601613 ACGCACTATATTTTGAAATGGAGGAA 59.398 34.615 0.00 0.00 0.00 3.36
3351 3517 7.134815 CGCACTATATTTTGAAATGGAGGAAG 58.865 38.462 0.00 0.00 0.00 3.46
3352 3518 7.201732 CGCACTATATTTTGAAATGGAGGAAGT 60.202 37.037 0.00 0.00 0.00 3.01
3353 3519 9.120538 GCACTATATTTTGAAATGGAGGAAGTA 57.879 33.333 0.00 0.00 0.00 2.24
3370 3536 7.602265 GGAGGAAGTATTATTCATCTCTCTTGC 59.398 40.741 1.78 0.00 39.37 4.01
3373 3539 7.930865 GGAAGTATTATTCATCTCTCTTGCTGT 59.069 37.037 0.00 0.00 0.00 4.40
3379 3545 3.935315 TCATCTCTCTTGCTGTTCCTTG 58.065 45.455 0.00 0.00 0.00 3.61
3403 3569 0.890542 ACTGCGAGGCATCTGCAAAA 60.891 50.000 16.12 0.00 44.36 2.44
3438 3604 0.179163 GTTGGCAATTAGCTGACGCC 60.179 55.000 12.53 12.53 44.79 5.68
3460 3626 3.209097 CGTTAATGCCGCCCCCAG 61.209 66.667 0.00 0.00 0.00 4.45
3476 3642 4.332637 AGCAAGCAAAGCCGCACG 62.333 61.111 0.00 0.00 31.16 5.34
3598 3783 4.578601 CGGAATTTGAACGCTTCTGATAC 58.421 43.478 0.00 0.00 0.00 2.24
3601 3786 4.842139 ATTTGAACGCTTCTGATACGAC 57.158 40.909 6.81 2.34 0.00 4.34
3608 3793 1.676057 CTTCTGATACGACGGCGATC 58.324 55.000 22.49 16.87 41.64 3.69
3677 3862 2.951457 GGAACGAGAAGGAGAAGGAG 57.049 55.000 0.00 0.00 0.00 3.69
3688 3873 3.077359 AGGAGAAGGAGAATTGTTTGCG 58.923 45.455 0.00 0.00 0.00 4.85
3707 3892 2.507944 CCAAGAGGGGAGATGCCG 59.492 66.667 0.00 0.00 37.63 5.69
3718 3903 2.533266 GGAGATGCCGCATTTTTCTTG 58.467 47.619 7.43 0.00 0.00 3.02
3730 3915 4.499019 GCATTTTTCTTGAGTTGGAACCGA 60.499 41.667 0.00 0.00 0.00 4.69
3731 3916 4.893424 TTTTTCTTGAGTTGGAACCGAG 57.107 40.909 0.00 0.00 0.00 4.63
3732 3917 3.553828 TTTCTTGAGTTGGAACCGAGT 57.446 42.857 0.00 0.00 0.00 4.18
3744 3929 2.107178 GAACCGAGTAGTAATCGCACG 58.893 52.381 14.27 4.08 38.84 5.34
3773 3958 1.515088 CGTCTCCGTAGTGCTGCAG 60.515 63.158 10.11 10.11 0.00 4.41
3784 4002 2.202570 GCTGCAGCTTTGCATCGG 60.203 61.111 31.33 0.00 44.47 4.18
3852 4070 2.351726 GAGAATACGGACACATTGTGGC 59.648 50.000 20.33 17.67 41.56 5.01
3857 4075 1.855213 CGGACACATTGTGGCAGTGG 61.855 60.000 23.58 6.43 44.59 4.00
3893 4111 0.730265 TGTGTTTGTGCGAGTTGGAC 59.270 50.000 0.00 0.00 39.78 4.02
3908 4126 1.749258 GGACCGAACATTGGGAGGC 60.749 63.158 0.00 0.00 0.00 4.70
3914 4132 1.304713 AACATTGGGAGGCAGCAGG 60.305 57.895 0.00 0.00 0.00 4.85
3924 4142 0.540597 AGGCAGCAGGGACTTTTTCC 60.541 55.000 0.00 0.00 45.00 3.13
3926 4144 1.332195 GCAGCAGGGACTTTTTCCTT 58.668 50.000 0.00 0.00 45.09 3.36
3928 4146 2.546584 GCAGCAGGGACTTTTTCCTTTG 60.547 50.000 0.00 0.00 45.09 2.77
3934 4152 5.496556 CAGGGACTTTTTCCTTTGGTTTTT 58.503 37.500 0.00 0.00 45.09 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.398538 TGTAAAAGAGTTTAGTTGCTAAAGGAA 57.601 29.630 2.01 0.00 36.73 3.36
2 3 8.833493 GTGTAAAAGAGTTTAGTTGCTAAAGGA 58.167 33.333 2.01 0.00 36.73 3.36
3 4 8.074370 GGTGTAAAAGAGTTTAGTTGCTAAAGG 58.926 37.037 2.01 0.00 36.73 3.11
4 5 8.617809 TGGTGTAAAAGAGTTTAGTTGCTAAAG 58.382 33.333 2.01 0.00 36.73 1.85
5 6 8.400186 GTGGTGTAAAAGAGTTTAGTTGCTAAA 58.600 33.333 0.00 0.00 34.12 1.85
6 7 7.254522 CGTGGTGTAAAAGAGTTTAGTTGCTAA 60.255 37.037 0.00 0.00 29.74 3.09
9 10 5.202640 CGTGGTGTAAAAGAGTTTAGTTGC 58.797 41.667 0.00 0.00 29.74 4.17
10 11 6.036300 TCACGTGGTGTAAAAGAGTTTAGTTG 59.964 38.462 17.00 0.00 34.79 3.16
11 12 6.108015 TCACGTGGTGTAAAAGAGTTTAGTT 58.892 36.000 17.00 0.00 34.79 2.24
12 13 5.663456 TCACGTGGTGTAAAAGAGTTTAGT 58.337 37.500 17.00 0.00 34.79 2.24
13 14 6.780706 ATCACGTGGTGTAAAAGAGTTTAG 57.219 37.500 17.00 0.00 34.79 1.85
14 15 7.208777 TGTATCACGTGGTGTAAAAGAGTTTA 58.791 34.615 17.00 0.00 34.79 2.01
15 16 6.050432 TGTATCACGTGGTGTAAAAGAGTTT 58.950 36.000 17.00 0.00 34.79 2.66
16 17 5.603596 TGTATCACGTGGTGTAAAAGAGTT 58.396 37.500 17.00 0.00 34.79 3.01
17 18 5.204409 TGTATCACGTGGTGTAAAAGAGT 57.796 39.130 17.00 0.00 34.79 3.24
18 19 5.637810 ACATGTATCACGTGGTGTAAAAGAG 59.362 40.000 17.00 0.00 39.36 2.85
19 20 5.407084 CACATGTATCACGTGGTGTAAAAGA 59.593 40.000 17.00 0.00 39.36 2.52
20 21 5.390461 CCACATGTATCACGTGGTGTAAAAG 60.390 44.000 17.00 1.08 44.27 2.27
21 22 4.452795 CCACATGTATCACGTGGTGTAAAA 59.547 41.667 17.00 0.00 44.27 1.52
22 23 3.997681 CCACATGTATCACGTGGTGTAAA 59.002 43.478 17.00 2.40 44.27 2.01
23 24 3.591023 CCACATGTATCACGTGGTGTAA 58.409 45.455 17.00 0.00 44.27 2.41
24 25 3.239587 CCACATGTATCACGTGGTGTA 57.760 47.619 17.00 2.14 44.27 2.90
25 26 2.093306 CCACATGTATCACGTGGTGT 57.907 50.000 17.00 10.18 44.27 4.16
29 30 3.258228 TGCTTACCACATGTATCACGTG 58.742 45.455 9.94 9.94 40.80 4.49
30 31 3.603158 TGCTTACCACATGTATCACGT 57.397 42.857 0.00 0.00 0.00 4.49
31 32 4.024893 GGATTGCTTACCACATGTATCACG 60.025 45.833 0.00 0.00 0.00 4.35
32 33 4.881273 TGGATTGCTTACCACATGTATCAC 59.119 41.667 0.00 0.00 0.00 3.06
33 34 5.109500 TGGATTGCTTACCACATGTATCA 57.891 39.130 0.00 0.00 0.00 2.15
34 35 6.127758 TGTTTGGATTGCTTACCACATGTATC 60.128 38.462 0.00 0.00 35.81 2.24
35 36 5.714333 TGTTTGGATTGCTTACCACATGTAT 59.286 36.000 0.00 0.00 35.81 2.29
36 37 5.073428 TGTTTGGATTGCTTACCACATGTA 58.927 37.500 0.00 0.00 35.81 2.29
37 38 3.894427 TGTTTGGATTGCTTACCACATGT 59.106 39.130 0.00 0.00 35.81 3.21
38 39 4.517952 TGTTTGGATTGCTTACCACATG 57.482 40.909 0.00 0.00 35.81 3.21
39 40 4.588528 AGTTGTTTGGATTGCTTACCACAT 59.411 37.500 0.00 0.00 35.81 3.21
40 41 3.957497 AGTTGTTTGGATTGCTTACCACA 59.043 39.130 0.00 0.00 35.81 4.17
41 42 4.037446 TGAGTTGTTTGGATTGCTTACCAC 59.963 41.667 0.00 0.00 35.81 4.16
42 43 4.211125 TGAGTTGTTTGGATTGCTTACCA 58.789 39.130 0.00 0.00 0.00 3.25
43 44 4.846779 TGAGTTGTTTGGATTGCTTACC 57.153 40.909 0.00 0.00 0.00 2.85
44 45 7.532682 TTTTTGAGTTGTTTGGATTGCTTAC 57.467 32.000 0.00 0.00 0.00 2.34
74 75 9.316730 TGTCACGTAAACATAAAAGAGTTTAGT 57.683 29.630 0.00 0.00 39.91 2.24
77 78 8.617809 ACATGTCACGTAAACATAAAAGAGTTT 58.382 29.630 13.58 0.00 40.68 2.66
78 79 8.149973 ACATGTCACGTAAACATAAAAGAGTT 57.850 30.769 13.58 0.00 35.62 3.01
79 80 7.724305 ACATGTCACGTAAACATAAAAGAGT 57.276 32.000 13.58 5.88 35.62 3.24
81 82 9.866936 GTAAACATGTCACGTAAACATAAAAGA 57.133 29.630 13.58 0.03 35.62 2.52
82 83 9.109533 GGTAAACATGTCACGTAAACATAAAAG 57.890 33.333 13.58 6.23 35.62 2.27
83 84 8.618677 TGGTAAACATGTCACGTAAACATAAAA 58.381 29.630 13.58 1.05 35.62 1.52
84 85 8.151141 TGGTAAACATGTCACGTAAACATAAA 57.849 30.769 13.58 0.78 35.62 1.40
85 86 7.725818 TGGTAAACATGTCACGTAAACATAA 57.274 32.000 13.58 1.05 35.62 1.90
86 87 7.820386 AGATGGTAAACATGTCACGTAAACATA 59.180 33.333 13.58 0.41 40.72 2.29
87 88 6.653320 AGATGGTAAACATGTCACGTAAACAT 59.347 34.615 0.00 9.34 40.72 2.71
88 89 5.992829 AGATGGTAAACATGTCACGTAAACA 59.007 36.000 0.00 5.52 40.72 2.83
89 90 6.304126 CAGATGGTAAACATGTCACGTAAAC 58.696 40.000 0.00 0.00 40.72 2.01
90 91 5.106869 GCAGATGGTAAACATGTCACGTAAA 60.107 40.000 0.00 0.00 40.72 2.01
94 95 2.222796 CGCAGATGGTAAACATGTCACG 60.223 50.000 0.00 0.00 40.72 4.35
107 108 4.758251 TCCACGGTGCGCAGATGG 62.758 66.667 22.66 22.66 0.00 3.51
112 113 2.593148 AATGTTCCACGGTGCGCA 60.593 55.556 5.66 5.66 0.00 6.09
115 116 0.240945 CTTCCAATGTTCCACGGTGC 59.759 55.000 1.68 0.00 0.00 5.01
119 120 1.165270 GACCCTTCCAATGTTCCACG 58.835 55.000 0.00 0.00 0.00 4.94
123 124 2.076863 CGTCAGACCCTTCCAATGTTC 58.923 52.381 0.00 0.00 0.00 3.18
128 129 2.342279 CGCGTCAGACCCTTCCAA 59.658 61.111 0.00 0.00 0.00 3.53
132 133 3.509137 TTTCGCGCGTCAGACCCTT 62.509 57.895 30.98 0.00 0.00 3.95
134 135 3.774702 GTTTCGCGCGTCAGACCC 61.775 66.667 30.98 8.07 0.00 4.46
136 137 0.453950 TAGAGTTTCGCGCGTCAGAC 60.454 55.000 30.98 21.75 0.00 3.51
137 138 0.453950 GTAGAGTTTCGCGCGTCAGA 60.454 55.000 30.98 7.39 0.00 3.27
138 139 0.454620 AGTAGAGTTTCGCGCGTCAG 60.455 55.000 30.98 0.61 0.00 3.51
139 140 0.453950 GAGTAGAGTTTCGCGCGTCA 60.454 55.000 30.98 15.35 0.00 4.35
140 141 1.132780 GGAGTAGAGTTTCGCGCGTC 61.133 60.000 30.98 19.83 0.00 5.19
142 143 1.872679 GGGAGTAGAGTTTCGCGCG 60.873 63.158 26.76 26.76 0.00 6.86
143 144 0.802607 CAGGGAGTAGAGTTTCGCGC 60.803 60.000 0.00 0.00 0.00 6.86
144 145 0.802607 GCAGGGAGTAGAGTTTCGCG 60.803 60.000 0.00 0.00 0.00 5.87
145 146 0.246635 TGCAGGGAGTAGAGTTTCGC 59.753 55.000 0.00 0.00 0.00 4.70
146 147 1.272490 TGTGCAGGGAGTAGAGTTTCG 59.728 52.381 0.00 0.00 0.00 3.46
147 148 2.037251 TGTGTGCAGGGAGTAGAGTTTC 59.963 50.000 0.00 0.00 0.00 2.78
148 149 2.047061 TGTGTGCAGGGAGTAGAGTTT 58.953 47.619 0.00 0.00 0.00 2.66
149 150 1.344763 GTGTGTGCAGGGAGTAGAGTT 59.655 52.381 0.00 0.00 0.00 3.01
161 166 1.948834 CTCCTCATTTGTGTGTGTGCA 59.051 47.619 0.00 0.00 0.00 4.57
179 184 4.032558 CGGTTTATGACGGCTAAAAGTCTC 59.967 45.833 0.00 0.00 38.16 3.36
182 187 3.667360 ACGGTTTATGACGGCTAAAAGT 58.333 40.909 0.00 0.00 32.21 2.66
184 189 6.551385 TTTTACGGTTTATGACGGCTAAAA 57.449 33.333 0.00 0.00 30.89 1.52
185 190 6.551385 TTTTTACGGTTTATGACGGCTAAA 57.449 33.333 0.00 0.00 32.21 1.85
222 227 2.264005 TGTCACGGCTGGTTTTACAT 57.736 45.000 0.00 0.00 0.00 2.29
223 228 2.264005 ATGTCACGGCTGGTTTTACA 57.736 45.000 0.00 0.00 0.00 2.41
224 229 6.613755 AATATATGTCACGGCTGGTTTTAC 57.386 37.500 0.00 0.00 0.00 2.01
225 230 8.911918 ATAAATATATGTCACGGCTGGTTTTA 57.088 30.769 0.00 0.00 0.00 1.52
229 234 5.637810 CGAATAAATATATGTCACGGCTGGT 59.362 40.000 0.00 0.00 0.00 4.00
231 236 6.944557 TCGAATAAATATATGTCACGGCTG 57.055 37.500 0.00 0.00 0.00 4.85
266 271 3.068590 GGTTTAGGCGGCGGCTATATATA 59.931 47.826 38.04 23.33 40.30 0.86
267 272 2.159000 GGTTTAGGCGGCGGCTATATAT 60.159 50.000 38.04 18.91 40.30 0.86
291 296 2.252260 CGCTTTGTCCGTGCTTGG 59.748 61.111 0.00 0.00 0.00 3.61
292 297 3.022287 ACGCTTTGTCCGTGCTTG 58.978 55.556 0.00 0.00 37.56 4.01
333 338 1.414158 TGGTATAGTGCTGGCTCCTC 58.586 55.000 0.00 0.00 0.00 3.71
334 339 1.486726 GTTGGTATAGTGCTGGCTCCT 59.513 52.381 0.00 0.00 0.00 3.69
335 340 1.209504 TGTTGGTATAGTGCTGGCTCC 59.790 52.381 0.00 0.00 0.00 4.70
340 345 2.030823 CGCATGTGTTGGTATAGTGCTG 59.969 50.000 0.00 0.00 0.00 4.41
351 356 2.114670 CCTAGCCCCGCATGTGTTG 61.115 63.158 5.38 0.00 0.00 3.33
417 424 3.728373 ACCCCGCCCCACTTGATC 61.728 66.667 0.00 0.00 0.00 2.92
444 451 3.621892 CTTGGACGGACGGACGGAC 62.622 68.421 6.00 0.00 38.39 4.79
445 452 3.367743 CTTGGACGGACGGACGGA 61.368 66.667 6.00 0.00 38.39 4.69
447 454 4.351938 TGCTTGGACGGACGGACG 62.352 66.667 0.00 0.00 40.31 4.79
463 470 1.826054 TTTGGGCACGTGTTCCCTG 60.826 57.895 25.78 0.00 43.04 4.45
544 573 1.895798 CTGCTCTGTGACCTCAGGTTA 59.104 52.381 0.00 0.00 35.25 2.85
622 651 5.935945 TCCCCTCTCGCATTTGATTAATAA 58.064 37.500 0.00 0.00 0.00 1.40
623 652 5.560722 TCCCCTCTCGCATTTGATTAATA 57.439 39.130 0.00 0.00 0.00 0.98
624 653 4.437682 TCCCCTCTCGCATTTGATTAAT 57.562 40.909 0.00 0.00 0.00 1.40
625 654 3.924114 TCCCCTCTCGCATTTGATTAA 57.076 42.857 0.00 0.00 0.00 1.40
640 669 2.043953 GCGGCCTTCAATTCCCCT 60.044 61.111 0.00 0.00 0.00 4.79
694 736 3.326588 ACCCCGGATTAATCAATCGATCA 59.673 43.478 17.07 0.00 41.37 2.92
699 741 5.627135 TCCTAAACCCCGGATTAATCAATC 58.373 41.667 17.07 0.00 39.98 2.67
703 745 5.300411 TCTTCCTAAACCCCGGATTAATC 57.700 43.478 0.73 6.93 0.00 1.75
746 812 1.602377 CCAACCAAACCAAGTCGTCTC 59.398 52.381 0.00 0.00 0.00 3.36
802 868 2.535534 CGCGTGTCTCGTTCTTATCGTA 60.536 50.000 0.00 0.00 42.13 3.43
908 1013 2.271800 GCGGAAGAAGCGATATATGGG 58.728 52.381 0.00 0.00 0.00 4.00
973 1082 1.227380 CGGGGGAATCGAAGAGCAG 60.227 63.158 0.00 0.00 43.63 4.24
974 1083 1.676678 CTCGGGGGAATCGAAGAGCA 61.677 60.000 0.00 0.00 43.63 4.26
975 1084 1.068250 CTCGGGGGAATCGAAGAGC 59.932 63.158 0.00 0.00 43.63 4.09
976 1085 1.742768 CCTCGGGGGAATCGAAGAG 59.257 63.158 0.00 0.00 37.29 2.85
1006 1115 1.228675 AAGGGGTTGCTGCTCCTTG 60.229 57.895 10.73 0.00 46.89 3.61
1007 1116 3.265601 AAGGGGTTGCTGCTCCTT 58.734 55.556 6.45 6.45 44.12 3.36
1008 1117 1.430369 AAGAAGGGGTTGCTGCTCCT 61.430 55.000 0.00 0.00 42.17 3.69
1009 1118 0.962855 GAAGAAGGGGTTGCTGCTCC 60.963 60.000 0.00 3.53 0.00 4.70
1010 1119 0.037447 AGAAGAAGGGGTTGCTGCTC 59.963 55.000 0.00 0.00 0.00 4.26
1036 1145 0.040067 CCGCACCAAGAACAAGAAGC 60.040 55.000 0.00 0.00 0.00 3.86
1037 1146 1.002468 CACCGCACCAAGAACAAGAAG 60.002 52.381 0.00 0.00 0.00 2.85
1145 1254 0.474614 GGAAGGAGGGTGGGCTAATC 59.525 60.000 0.00 0.00 0.00 1.75
1147 1256 1.618447 GGGAAGGAGGGTGGGCTAA 60.618 63.158 0.00 0.00 0.00 3.09
1148 1257 2.042261 GGGAAGGAGGGTGGGCTA 59.958 66.667 0.00 0.00 0.00 3.93
1149 1258 3.952799 GAGGGAAGGAGGGTGGGCT 62.953 68.421 0.00 0.00 0.00 5.19
1150 1259 3.412408 GAGGGAAGGAGGGTGGGC 61.412 72.222 0.00 0.00 0.00 5.36
1162 1271 0.999493 TAGCAGCTAGGGGAGAGGGA 60.999 60.000 0.00 0.00 0.00 4.20
1167 1277 2.862223 GCGGTAGCAGCTAGGGGAG 61.862 68.421 1.02 0.00 44.35 4.30
1168 1278 2.838225 GCGGTAGCAGCTAGGGGA 60.838 66.667 1.02 0.00 44.35 4.81
1192 1302 1.606737 GCAGGAGAGGAATGGCGATAC 60.607 57.143 0.00 0.00 0.00 2.24
1279 1407 3.060615 CCCCAGACAGCAGCAAGC 61.061 66.667 0.00 0.00 46.19 4.01
1280 1408 1.970114 CACCCCAGACAGCAGCAAG 60.970 63.158 0.00 0.00 0.00 4.01
1281 1409 2.113774 CACCCCAGACAGCAGCAA 59.886 61.111 0.00 0.00 0.00 3.91
1282 1410 2.848679 TCACCCCAGACAGCAGCA 60.849 61.111 0.00 0.00 0.00 4.41
1283 1411 2.046507 CTCACCCCAGACAGCAGC 60.047 66.667 0.00 0.00 0.00 5.25
1284 1412 2.667418 CCTCACCCCAGACAGCAG 59.333 66.667 0.00 0.00 0.00 4.24
1285 1413 2.930019 CCCTCACCCCAGACAGCA 60.930 66.667 0.00 0.00 0.00 4.41
1286 1414 1.566298 ATTCCCTCACCCCAGACAGC 61.566 60.000 0.00 0.00 0.00 4.40
1287 1415 0.254178 CATTCCCTCACCCCAGACAG 59.746 60.000 0.00 0.00 0.00 3.51
1288 1416 0.178876 TCATTCCCTCACCCCAGACA 60.179 55.000 0.00 0.00 0.00 3.41
1289 1417 0.543749 CTCATTCCCTCACCCCAGAC 59.456 60.000 0.00 0.00 0.00 3.51
1290 1418 0.621571 CCTCATTCCCTCACCCCAGA 60.622 60.000 0.00 0.00 0.00 3.86
1291 1419 1.639635 CCCTCATTCCCTCACCCCAG 61.640 65.000 0.00 0.00 0.00 4.45
1292 1420 1.619363 CCCTCATTCCCTCACCCCA 60.619 63.158 0.00 0.00 0.00 4.96
1293 1421 2.386935 CCCCTCATTCCCTCACCCC 61.387 68.421 0.00 0.00 0.00 4.95
1299 1427 0.921256 CCAGTTCCCCCTCATTCCCT 60.921 60.000 0.00 0.00 0.00 4.20
1300 1428 1.214992 ACCAGTTCCCCCTCATTCCC 61.215 60.000 0.00 0.00 0.00 3.97
1308 1436 1.144298 AGTAACACAACCAGTTCCCCC 59.856 52.381 0.00 0.00 0.00 5.40
1322 1450 1.295357 CGCCCGATGCAACAGTAACA 61.295 55.000 0.00 0.00 41.33 2.41
1367 1503 2.278857 CGAACTGATCCCGCTCCG 60.279 66.667 0.00 0.00 0.00 4.63
1386 1522 0.824109 ATTCCTCGCAGGATTGACGA 59.176 50.000 5.83 0.00 45.34 4.20
1387 1523 0.933097 CATTCCTCGCAGGATTGACG 59.067 55.000 15.98 0.00 45.34 4.35
1398 1534 0.721718 GCTTTGACCGTCATTCCTCG 59.278 55.000 1.09 0.00 0.00 4.63
1503 1644 1.866925 GACGCGGAACCAAAAGAGG 59.133 57.895 12.47 0.00 0.00 3.69
1506 1647 1.203313 GACGACGCGGAACCAAAAG 59.797 57.895 12.47 0.00 0.00 2.27
1553 1699 1.648467 GCGAGGACTGGTGCCAAATC 61.648 60.000 0.00 0.00 0.00 2.17
1560 1706 1.066143 ACATAAAGGCGAGGACTGGTG 60.066 52.381 0.00 0.00 0.00 4.17
1570 1720 7.463469 AGAAACAAAAGAAAACATAAAGGCG 57.537 32.000 0.00 0.00 0.00 5.52
1597 1747 8.272176 GCGAGTACTCTATCAATCAATCAAAAG 58.728 37.037 20.34 0.00 0.00 2.27
1598 1748 7.763985 TGCGAGTACTCTATCAATCAATCAAAA 59.236 33.333 20.34 0.00 0.00 2.44
1603 1753 6.398234 AGTGCGAGTACTCTATCAATCAAT 57.602 37.500 20.34 4.01 0.00 2.57
1613 1763 5.646577 AAACAATCTAGTGCGAGTACTCT 57.353 39.130 20.34 4.52 32.19 3.24
1616 1766 5.062308 CCAGAAAACAATCTAGTGCGAGTAC 59.938 44.000 0.00 0.00 0.00 2.73
1617 1767 5.168569 CCAGAAAACAATCTAGTGCGAGTA 58.831 41.667 0.00 0.00 0.00 2.59
1630 1784 4.737352 GCTGACAAGATTGCCAGAAAACAA 60.737 41.667 12.37 0.00 40.56 2.83
1631 1785 3.243501 GCTGACAAGATTGCCAGAAAACA 60.244 43.478 12.37 0.00 40.56 2.83
1632 1786 3.311966 GCTGACAAGATTGCCAGAAAAC 58.688 45.455 12.37 0.00 40.56 2.43
1633 1787 2.030893 CGCTGACAAGATTGCCAGAAAA 60.031 45.455 12.37 0.00 40.56 2.29
1720 1885 6.207417 ACCACAAGATAAAGATTGGTCAGTTG 59.793 38.462 0.00 0.00 31.53 3.16
1736 1901 2.098614 TGCACACAACAACCACAAGAT 58.901 42.857 0.00 0.00 0.00 2.40
1737 1902 1.472082 CTGCACACAACAACCACAAGA 59.528 47.619 0.00 0.00 0.00 3.02
1772 1937 3.114647 CTCCTCTTCGTCCGGCTCG 62.115 68.421 11.57 11.57 0.00 5.03
1913 2078 3.425713 ATGTTGCACTCGCCGCTG 61.426 61.111 0.00 0.00 37.32 5.18
2228 2393 0.667792 AGAAGCGGAAGTTGTCGAGC 60.668 55.000 0.00 0.00 0.00 5.03
2309 2474 2.969238 CTGGCCCGCATCATCGTC 60.969 66.667 0.00 0.00 0.00 4.20
2398 2563 3.797546 GCGTGAAGCTCTGCCTGC 61.798 66.667 0.00 0.00 44.04 4.85
2522 2687 2.179018 CTTTGTCAATGGCGGGCG 59.821 61.111 0.00 0.00 0.00 6.13
2523 2688 2.125952 GCTTTGTCAATGGCGGGC 60.126 61.111 0.00 0.00 0.00 6.13
2714 2879 1.626825 AGCGGTAAGAAAAGGCTGGTA 59.373 47.619 0.00 0.00 31.74 3.25
2731 2896 9.148104 TGATGATGAAGAAGATGATTATAAGCG 57.852 33.333 0.00 0.00 0.00 4.68
2745 2910 5.910614 AGTGACGATGATGATGATGAAGAA 58.089 37.500 0.00 0.00 0.00 2.52
2748 2913 5.536161 TCCTAGTGACGATGATGATGATGAA 59.464 40.000 0.00 0.00 0.00 2.57
2763 2928 6.635030 ATTTTTGGTTTCTGTCCTAGTGAC 57.365 37.500 4.84 4.84 44.72 3.67
2764 2929 7.229907 GGTAATTTTTGGTTTCTGTCCTAGTGA 59.770 37.037 0.00 0.00 0.00 3.41
2765 2930 7.013846 TGGTAATTTTTGGTTTCTGTCCTAGTG 59.986 37.037 0.00 0.00 0.00 2.74
2766 2931 7.013942 GTGGTAATTTTTGGTTTCTGTCCTAGT 59.986 37.037 0.00 0.00 0.00 2.57
2807 2972 7.056635 GCAGGGCCATAATCATATACTGTAAT 58.943 38.462 6.18 0.00 0.00 1.89
2808 2973 6.215431 AGCAGGGCCATAATCATATACTGTAA 59.785 38.462 6.18 0.00 0.00 2.41
2809 2974 5.726308 AGCAGGGCCATAATCATATACTGTA 59.274 40.000 6.18 0.00 0.00 2.74
2812 2977 5.035556 AGAGCAGGGCCATAATCATATACT 58.964 41.667 6.18 0.00 0.00 2.12
2840 3005 6.777213 AGTCTAGTGTGGTGGTAGAAATAG 57.223 41.667 0.00 0.00 0.00 1.73
2842 3007 5.542635 TCAAGTCTAGTGTGGTGGTAGAAAT 59.457 40.000 0.00 0.00 0.00 2.17
2843 3008 4.897076 TCAAGTCTAGTGTGGTGGTAGAAA 59.103 41.667 0.00 0.00 0.00 2.52
2845 3010 4.079970 CTCAAGTCTAGTGTGGTGGTAGA 58.920 47.826 0.00 0.00 0.00 2.59
2846 3011 3.827302 ACTCAAGTCTAGTGTGGTGGTAG 59.173 47.826 0.00 0.00 0.00 3.18
2847 3012 3.840991 ACTCAAGTCTAGTGTGGTGGTA 58.159 45.455 0.00 0.00 0.00 3.25
2848 3013 2.679082 ACTCAAGTCTAGTGTGGTGGT 58.321 47.619 0.00 0.00 0.00 4.16
2849 3014 3.753294 AACTCAAGTCTAGTGTGGTGG 57.247 47.619 0.00 0.00 0.00 4.61
2850 3015 4.876107 ACAAAACTCAAGTCTAGTGTGGTG 59.124 41.667 0.00 0.00 0.00 4.17
2885 3050 3.067106 CGCATTGCCTGGTATTACCTAG 58.933 50.000 13.90 9.23 39.58 3.02
2940 3105 8.082242 ACAAAACCTGATTAACAAGTAGCAATC 58.918 33.333 0.00 0.00 0.00 2.67
2946 3111 8.726988 GCTATCACAAAACCTGATTAACAAGTA 58.273 33.333 0.00 0.00 30.76 2.24
3012 3177 2.380084 TAACAAGCAGTCGTCCATCC 57.620 50.000 0.00 0.00 0.00 3.51
3013 3178 3.585862 TCTTAACAAGCAGTCGTCCATC 58.414 45.455 0.00 0.00 0.00 3.51
3014 3179 3.678056 TCTTAACAAGCAGTCGTCCAT 57.322 42.857 0.00 0.00 0.00 3.41
3015 3180 3.462483 TTCTTAACAAGCAGTCGTCCA 57.538 42.857 0.00 0.00 0.00 4.02
3019 3184 6.128282 ACACCATATTTCTTAACAAGCAGTCG 60.128 38.462 0.00 0.00 0.00 4.18
3069 3234 3.865745 CAGAATCAGACGTTGACCCATAC 59.134 47.826 0.00 0.00 38.99 2.39
3105 3271 7.720957 TGTGGAATGAAGGGAGTAATAATGATG 59.279 37.037 0.00 0.00 0.00 3.07
3108 3274 7.880160 TTGTGGAATGAAGGGAGTAATAATG 57.120 36.000 0.00 0.00 0.00 1.90
3112 3278 5.831103 ACATTGTGGAATGAAGGGAGTAAT 58.169 37.500 0.00 0.00 41.49 1.89
3113 3279 5.255397 ACATTGTGGAATGAAGGGAGTAA 57.745 39.130 0.00 0.00 41.49 2.24
3114 3280 4.927267 ACATTGTGGAATGAAGGGAGTA 57.073 40.909 0.00 0.00 41.49 2.59
3115 3281 3.814504 ACATTGTGGAATGAAGGGAGT 57.185 42.857 0.00 0.00 41.49 3.85
3116 3282 4.637534 CACTACATTGTGGAATGAAGGGAG 59.362 45.833 7.20 0.00 41.49 4.30
3117 3283 4.588899 CACTACATTGTGGAATGAAGGGA 58.411 43.478 7.20 0.00 41.49 4.20
3118 3284 3.129287 GCACTACATTGTGGAATGAAGGG 59.871 47.826 7.20 0.00 41.49 3.95
3119 3285 4.012374 AGCACTACATTGTGGAATGAAGG 58.988 43.478 7.20 0.00 41.49 3.46
3120 3286 5.392380 GGAAGCACTACATTGTGGAATGAAG 60.392 44.000 7.20 0.00 41.49 3.02
3121 3287 4.458989 GGAAGCACTACATTGTGGAATGAA 59.541 41.667 7.20 0.00 41.49 2.57
3122 3288 4.009675 GGAAGCACTACATTGTGGAATGA 58.990 43.478 7.20 0.00 41.49 2.57
3123 3289 4.012374 AGGAAGCACTACATTGTGGAATG 58.988 43.478 7.20 0.00 44.11 2.67
3124 3290 4.307032 AGGAAGCACTACATTGTGGAAT 57.693 40.909 7.20 0.00 38.31 3.01
3125 3291 3.788227 AGGAAGCACTACATTGTGGAA 57.212 42.857 7.20 0.00 38.31 3.53
3126 3292 3.788227 AAGGAAGCACTACATTGTGGA 57.212 42.857 7.20 0.00 38.31 4.02
3127 3293 5.066505 GGATAAAGGAAGCACTACATTGTGG 59.933 44.000 0.00 0.00 38.31 4.17
3128 3294 5.882557 AGGATAAAGGAAGCACTACATTGTG 59.117 40.000 0.00 0.00 40.62 3.33
3129 3295 6.067217 AGGATAAAGGAAGCACTACATTGT 57.933 37.500 0.00 0.00 0.00 2.71
3130 3296 5.235186 CGAGGATAAAGGAAGCACTACATTG 59.765 44.000 0.00 0.00 0.00 2.82
3131 3297 5.104900 ACGAGGATAAAGGAAGCACTACATT 60.105 40.000 0.00 0.00 0.00 2.71
3132 3298 4.406003 ACGAGGATAAAGGAAGCACTACAT 59.594 41.667 0.00 0.00 0.00 2.29
3133 3299 3.767673 ACGAGGATAAAGGAAGCACTACA 59.232 43.478 0.00 0.00 0.00 2.74
3134 3300 4.113354 CACGAGGATAAAGGAAGCACTAC 58.887 47.826 0.00 0.00 0.00 2.73
3135 3301 3.767673 ACACGAGGATAAAGGAAGCACTA 59.232 43.478 0.00 0.00 0.00 2.74
3136 3302 2.567615 ACACGAGGATAAAGGAAGCACT 59.432 45.455 0.00 0.00 0.00 4.40
3137 3303 2.973945 ACACGAGGATAAAGGAAGCAC 58.026 47.619 0.00 0.00 0.00 4.40
3138 3304 3.695830 AACACGAGGATAAAGGAAGCA 57.304 42.857 0.00 0.00 0.00 3.91
3139 3305 4.000988 TGAAACACGAGGATAAAGGAAGC 58.999 43.478 0.00 0.00 0.00 3.86
3140 3306 5.701290 ACTTGAAACACGAGGATAAAGGAAG 59.299 40.000 0.00 0.00 34.46 3.46
3141 3307 5.617252 ACTTGAAACACGAGGATAAAGGAA 58.383 37.500 0.00 0.00 34.46 3.36
3142 3308 5.223449 ACTTGAAACACGAGGATAAAGGA 57.777 39.130 0.00 0.00 34.46 3.36
3143 3309 5.941948 AACTTGAAACACGAGGATAAAGG 57.058 39.130 0.00 0.00 34.46 3.11
3144 3310 6.851330 GTCAAACTTGAAACACGAGGATAAAG 59.149 38.462 0.00 0.00 39.21 1.85
3145 3311 6.238538 GGTCAAACTTGAAACACGAGGATAAA 60.239 38.462 0.00 0.00 39.21 1.40
3146 3312 5.237779 GGTCAAACTTGAAACACGAGGATAA 59.762 40.000 0.00 0.00 39.21 1.75
3147 3313 4.753107 GGTCAAACTTGAAACACGAGGATA 59.247 41.667 0.00 0.00 39.21 2.59
3148 3314 3.564225 GGTCAAACTTGAAACACGAGGAT 59.436 43.478 0.00 0.00 39.21 3.24
3149 3315 2.940410 GGTCAAACTTGAAACACGAGGA 59.060 45.455 0.00 0.00 39.21 3.71
3150 3316 2.286184 CGGTCAAACTTGAAACACGAGG 60.286 50.000 0.00 0.00 39.21 4.63
3151 3317 2.350498 ACGGTCAAACTTGAAACACGAG 59.650 45.455 11.49 0.00 39.21 4.18
3152 3318 2.348660 ACGGTCAAACTTGAAACACGA 58.651 42.857 11.49 0.00 39.21 4.35
3153 3319 2.817538 ACGGTCAAACTTGAAACACG 57.182 45.000 0.00 0.62 39.21 4.49
3154 3320 5.225899 AGTTACGGTCAAACTTGAAACAC 57.774 39.130 7.23 0.00 39.21 3.32
3155 3321 5.883503 AAGTTACGGTCAAACTTGAAACA 57.116 34.783 7.95 0.00 43.66 2.83
3156 3322 7.964559 AGTTAAAGTTACGGTCAAACTTGAAAC 59.035 33.333 17.20 17.20 44.35 2.78
3157 3323 8.042944 AGTTAAAGTTACGGTCAAACTTGAAA 57.957 30.769 9.20 5.56 44.35 2.69
3158 3324 7.614124 AGTTAAAGTTACGGTCAAACTTGAA 57.386 32.000 9.20 6.14 44.35 2.69
3159 3325 8.891671 ATAGTTAAAGTTACGGTCAAACTTGA 57.108 30.769 9.20 0.68 44.35 3.02
3160 3326 8.767085 TGATAGTTAAAGTTACGGTCAAACTTG 58.233 33.333 9.20 0.00 44.35 3.16
3161 3327 8.891671 TGATAGTTAAAGTTACGGTCAAACTT 57.108 30.769 3.74 3.74 46.45 2.66
3162 3328 8.891671 TTGATAGTTAAAGTTACGGTCAAACT 57.108 30.769 0.00 0.00 38.82 2.66
3163 3329 8.981647 TCTTGATAGTTAAAGTTACGGTCAAAC 58.018 33.333 0.00 0.00 0.00 2.93
3164 3330 8.981647 GTCTTGATAGTTAAAGTTACGGTCAAA 58.018 33.333 0.00 0.00 0.00 2.69
3165 3331 7.599998 GGTCTTGATAGTTAAAGTTACGGTCAA 59.400 37.037 0.00 0.00 0.00 3.18
3166 3332 7.092716 GGTCTTGATAGTTAAAGTTACGGTCA 58.907 38.462 0.00 0.00 0.00 4.02
3167 3333 6.252228 CGGTCTTGATAGTTAAAGTTACGGTC 59.748 42.308 0.00 0.00 0.00 4.79
3168 3334 6.071952 TCGGTCTTGATAGTTAAAGTTACGGT 60.072 38.462 0.00 0.00 0.00 4.83
3169 3335 6.324819 TCGGTCTTGATAGTTAAAGTTACGG 58.675 40.000 0.00 0.00 0.00 4.02
3170 3336 7.982371 ATCGGTCTTGATAGTTAAAGTTACG 57.018 36.000 0.00 0.00 0.00 3.18
3171 3337 8.114905 GCAATCGGTCTTGATAGTTAAAGTTAC 58.885 37.037 0.00 0.00 0.00 2.50
3172 3338 7.009815 CGCAATCGGTCTTGATAGTTAAAGTTA 59.990 37.037 0.00 0.00 0.00 2.24
3173 3339 6.183360 CGCAATCGGTCTTGATAGTTAAAGTT 60.183 38.462 0.00 0.00 0.00 2.66
3174 3340 5.291128 CGCAATCGGTCTTGATAGTTAAAGT 59.709 40.000 0.00 0.00 0.00 2.66
3175 3341 5.728255 CGCAATCGGTCTTGATAGTTAAAG 58.272 41.667 0.00 0.00 0.00 1.85
3176 3342 5.712217 CGCAATCGGTCTTGATAGTTAAA 57.288 39.130 0.00 0.00 0.00 1.52
3192 3358 2.485188 TTTTTGCTCCCGCCGCAATC 62.485 55.000 5.33 0.00 45.67 2.67
3193 3359 1.887344 ATTTTTGCTCCCGCCGCAAT 61.887 50.000 5.33 0.00 45.67 3.56
3194 3360 2.093537 AATTTTTGCTCCCGCCGCAA 62.094 50.000 0.00 0.00 44.83 4.85
3195 3361 1.244697 TAATTTTTGCTCCCGCCGCA 61.245 50.000 0.00 0.00 35.22 5.69
3196 3362 0.102300 ATAATTTTTGCTCCCGCCGC 59.898 50.000 0.00 0.00 34.43 6.53
3197 3363 3.252215 TGATATAATTTTTGCTCCCGCCG 59.748 43.478 0.00 0.00 34.43 6.46
3198 3364 4.278419 ACTGATATAATTTTTGCTCCCGCC 59.722 41.667 0.00 0.00 34.43 6.13
3199 3365 5.008613 TCACTGATATAATTTTTGCTCCCGC 59.991 40.000 0.00 0.00 0.00 6.13
3200 3366 6.618287 TCACTGATATAATTTTTGCTCCCG 57.382 37.500 0.00 0.00 0.00 5.14
3201 3367 9.468532 GAATTCACTGATATAATTTTTGCTCCC 57.531 33.333 0.00 0.00 0.00 4.30
3202 3368 9.173939 CGAATTCACTGATATAATTTTTGCTCC 57.826 33.333 6.22 0.00 0.00 4.70
3203 3369 9.722056 ACGAATTCACTGATATAATTTTTGCTC 57.278 29.630 6.22 0.00 0.00 4.26
3216 3382 9.003658 ACTTCTTTCAAATACGAATTCACTGAT 57.996 29.630 6.22 0.00 0.00 2.90
3217 3383 8.378172 ACTTCTTTCAAATACGAATTCACTGA 57.622 30.769 6.22 0.00 0.00 3.41
3218 3384 9.450807 AAACTTCTTTCAAATACGAATTCACTG 57.549 29.630 6.22 0.00 0.00 3.66
3259 3425 2.265182 CCAAGCGGCGGGAGAAAAA 61.265 57.895 9.78 0.00 0.00 1.94
3260 3426 2.671619 CCAAGCGGCGGGAGAAAA 60.672 61.111 9.78 0.00 0.00 2.29
3261 3427 3.894547 GACCAAGCGGCGGGAGAAA 62.895 63.158 18.50 0.00 34.57 2.52
3262 3428 4.388499 GACCAAGCGGCGGGAGAA 62.388 66.667 18.50 0.00 34.57 2.87
3264 3430 4.821589 GAGACCAAGCGGCGGGAG 62.822 72.222 18.50 1.24 34.57 4.30
3268 3434 3.777925 CAACGAGACCAAGCGGCG 61.778 66.667 0.51 0.51 34.57 6.46
3269 3435 3.423154 CCAACGAGACCAAGCGGC 61.423 66.667 0.00 0.00 34.57 6.53
3270 3436 0.320073 TAACCAACGAGACCAAGCGG 60.320 55.000 0.00 0.00 38.77 5.52
3271 3437 1.504359 TTAACCAACGAGACCAAGCG 58.496 50.000 0.00 0.00 0.00 4.68
3272 3438 4.499037 AATTTAACCAACGAGACCAAGC 57.501 40.909 0.00 0.00 0.00 4.01
3273 3439 8.079809 ACAATAAATTTAACCAACGAGACCAAG 58.920 33.333 1.21 0.00 0.00 3.61
3274 3440 7.942990 ACAATAAATTTAACCAACGAGACCAA 58.057 30.769 1.21 0.00 0.00 3.67
3275 3441 7.228906 TGACAATAAATTTAACCAACGAGACCA 59.771 33.333 1.21 0.00 0.00 4.02
3276 3442 7.586747 TGACAATAAATTTAACCAACGAGACC 58.413 34.615 1.21 0.00 0.00 3.85
3277 3443 9.453325 TTTGACAATAAATTTAACCAACGAGAC 57.547 29.630 1.21 0.00 0.00 3.36
3294 3460 8.825745 GCTTTTCAAGGTTCAATTTTGACAATA 58.174 29.630 0.00 0.00 36.83 1.90
3295 3461 7.465781 CGCTTTTCAAGGTTCAATTTTGACAAT 60.466 33.333 0.00 0.00 36.83 2.71
3296 3462 6.183360 CGCTTTTCAAGGTTCAATTTTGACAA 60.183 34.615 0.00 0.00 36.83 3.18
3297 3463 5.290643 CGCTTTTCAAGGTTCAATTTTGACA 59.709 36.000 0.00 0.00 36.83 3.58
3298 3464 5.290885 ACGCTTTTCAAGGTTCAATTTTGAC 59.709 36.000 0.00 0.00 36.83 3.18
3299 3465 5.290643 CACGCTTTTCAAGGTTCAATTTTGA 59.709 36.000 0.00 0.00 34.92 2.69
3300 3466 5.491973 CACGCTTTTCAAGGTTCAATTTTG 58.508 37.500 0.00 0.00 0.00 2.44
3301 3467 4.570369 CCACGCTTTTCAAGGTTCAATTTT 59.430 37.500 0.00 0.00 0.00 1.82
3302 3468 4.119136 CCACGCTTTTCAAGGTTCAATTT 58.881 39.130 0.00 0.00 0.00 1.82
3303 3469 3.383185 TCCACGCTTTTCAAGGTTCAATT 59.617 39.130 0.00 0.00 0.00 2.32
3304 3470 2.955660 TCCACGCTTTTCAAGGTTCAAT 59.044 40.909 0.00 0.00 0.00 2.57
3305 3471 2.098443 GTCCACGCTTTTCAAGGTTCAA 59.902 45.455 0.00 0.00 0.00 2.69
3306 3472 1.673920 GTCCACGCTTTTCAAGGTTCA 59.326 47.619 0.00 0.00 0.00 3.18
3307 3473 1.333791 CGTCCACGCTTTTCAAGGTTC 60.334 52.381 0.00 0.00 0.00 3.62
3308 3474 0.661020 CGTCCACGCTTTTCAAGGTT 59.339 50.000 0.00 0.00 0.00 3.50
3309 3475 2.317230 CGTCCACGCTTTTCAAGGT 58.683 52.632 0.00 0.00 0.00 3.50
3320 3486 4.850859 TTCAAAATATAGTGCGTCCACG 57.149 40.909 0.00 0.00 46.62 4.94
3321 3487 5.971202 CCATTTCAAAATATAGTGCGTCCAC 59.029 40.000 0.00 0.00 42.39 4.02
3322 3488 5.883115 TCCATTTCAAAATATAGTGCGTCCA 59.117 36.000 0.00 0.00 0.00 4.02
3323 3489 6.371809 TCCATTTCAAAATATAGTGCGTCC 57.628 37.500 0.00 0.00 0.00 4.79
3324 3490 6.260050 TCCTCCATTTCAAAATATAGTGCGTC 59.740 38.462 0.00 0.00 0.00 5.19
3325 3491 6.119536 TCCTCCATTTCAAAATATAGTGCGT 58.880 36.000 0.00 0.00 0.00 5.24
3326 3492 6.618287 TCCTCCATTTCAAAATATAGTGCG 57.382 37.500 0.00 0.00 0.00 5.34
3327 3493 8.000780 ACTTCCTCCATTTCAAAATATAGTGC 57.999 34.615 0.00 0.00 0.00 4.40
3338 3504 9.784531 GAGATGAATAATACTTCCTCCATTTCA 57.215 33.333 0.00 0.00 0.00 2.69
3341 3507 9.391227 AGAGAGATGAATAATACTTCCTCCATT 57.609 33.333 0.00 0.00 0.00 3.16
3342 3508 8.971032 AGAGAGATGAATAATACTTCCTCCAT 57.029 34.615 0.00 0.00 0.00 3.41
3343 3509 8.646004 CAAGAGAGATGAATAATACTTCCTCCA 58.354 37.037 0.00 0.00 0.00 3.86
3344 3510 7.602265 GCAAGAGAGATGAATAATACTTCCTCC 59.398 40.741 0.00 0.00 0.00 4.30
3345 3511 8.367156 AGCAAGAGAGATGAATAATACTTCCTC 58.633 37.037 0.00 0.00 0.00 3.71
3346 3512 8.149647 CAGCAAGAGAGATGAATAATACTTCCT 58.850 37.037 0.00 0.00 0.00 3.36
3347 3513 7.930865 ACAGCAAGAGAGATGAATAATACTTCC 59.069 37.037 0.00 0.00 0.00 3.46
3348 3514 8.885494 ACAGCAAGAGAGATGAATAATACTTC 57.115 34.615 0.00 0.00 0.00 3.01
3349 3515 9.323985 GAACAGCAAGAGAGATGAATAATACTT 57.676 33.333 0.00 0.00 0.00 2.24
3350 3516 7.930865 GGAACAGCAAGAGAGATGAATAATACT 59.069 37.037 0.00 0.00 0.00 2.12
3351 3517 7.930865 AGGAACAGCAAGAGAGATGAATAATAC 59.069 37.037 0.00 0.00 0.00 1.89
3352 3518 8.027524 AGGAACAGCAAGAGAGATGAATAATA 57.972 34.615 0.00 0.00 0.00 0.98
3353 3519 6.897986 AGGAACAGCAAGAGAGATGAATAAT 58.102 36.000 0.00 0.00 0.00 1.28
3354 3520 6.305272 AGGAACAGCAAGAGAGATGAATAA 57.695 37.500 0.00 0.00 0.00 1.40
3355 3521 5.946942 AGGAACAGCAAGAGAGATGAATA 57.053 39.130 0.00 0.00 0.00 1.75
3370 3536 2.143122 TCGCAGTTAAGCAAGGAACAG 58.857 47.619 0.00 0.00 0.00 3.16
3373 3539 1.808411 CCTCGCAGTTAAGCAAGGAA 58.192 50.000 0.00 0.00 0.00 3.36
3379 3545 0.654683 CAGATGCCTCGCAGTTAAGC 59.345 55.000 0.00 0.00 43.65 3.09
3403 3569 2.607771 GCCAACATCAACGTCAAGCAAT 60.608 45.455 0.00 0.00 0.00 3.56
3476 3642 3.869272 CCTGCATCGACGCAAGCC 61.869 66.667 7.86 0.00 42.45 4.35
3507 3673 3.122948 CCGATTAATTAATCAGGCCGTCG 59.877 47.826 28.90 18.07 41.59 5.12
3562 3747 5.328691 TCAAATTCCGCTTAGTTTAATGCG 58.671 37.500 0.00 0.00 46.74 4.73
3577 3762 4.328983 TCGTATCAGAAGCGTTCAAATTCC 59.671 41.667 1.58 0.00 0.00 3.01
3668 3853 2.414691 GCGCAAACAATTCTCCTTCTCC 60.415 50.000 0.30 0.00 0.00 3.71
3672 3857 0.603065 GGGCGCAAACAATTCTCCTT 59.397 50.000 10.83 0.00 0.00 3.36
3673 3858 0.539438 TGGGCGCAAACAATTCTCCT 60.539 50.000 10.83 0.00 0.00 3.69
3674 3859 0.316841 TTGGGCGCAAACAATTCTCC 59.683 50.000 14.56 0.00 0.00 3.71
3675 3860 1.269448 TCTTGGGCGCAAACAATTCTC 59.731 47.619 17.59 0.00 0.00 2.87
3676 3861 1.270550 CTCTTGGGCGCAAACAATTCT 59.729 47.619 17.59 0.00 0.00 2.40
3677 3862 1.669795 CCTCTTGGGCGCAAACAATTC 60.670 52.381 17.59 0.00 0.00 2.17
3707 3892 3.735746 CGGTTCCAACTCAAGAAAAATGC 59.264 43.478 0.00 0.00 0.00 3.56
3718 3903 4.349501 CGATTACTACTCGGTTCCAACTC 58.650 47.826 0.00 0.00 32.58 3.01
3730 3915 2.619177 AGATGCTCGTGCGATTACTACT 59.381 45.455 4.84 0.00 43.34 2.57
3731 3916 3.001395 AGATGCTCGTGCGATTACTAC 57.999 47.619 4.84 0.00 43.34 2.73
3732 3917 3.372060 CAAGATGCTCGTGCGATTACTA 58.628 45.455 4.84 0.00 43.34 1.82
3744 3929 4.116878 GGAGACGGCAAGATGCTC 57.883 61.111 0.00 0.00 44.28 4.26
3756 3941 1.807573 GCTGCAGCACTACGGAGAC 60.808 63.158 33.36 0.00 41.59 3.36
3773 3958 2.096442 GCAAAGGCCGATGCAAAGC 61.096 57.895 25.18 7.41 42.12 3.51
3798 4016 0.391263 ACCAAAGACGGGCGATTCTC 60.391 55.000 0.00 0.00 0.00 2.87
3852 4070 1.559149 GCAATTTGCAACGCCCACTG 61.559 55.000 16.35 0.00 44.26 3.66
3893 4111 2.409870 GCTGCCTCCCAATGTTCGG 61.410 63.158 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.