Multiple sequence alignment - TraesCS1A01G192500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G192500 chr1A 100.000 4521 0 0 1 4521 347921810 347917290 0.000000e+00 8349.0
1 TraesCS1A01G192500 chr1A 90.323 93 8 1 3741 3833 347917980 347917889 2.210000e-23 121.0
2 TraesCS1A01G192500 chr1A 90.323 93 8 1 3831 3922 347918070 347917978 2.210000e-23 121.0
3 TraesCS1A01G192500 chr1B 93.539 2368 119 24 1010 3362 374859794 374857446 0.000000e+00 3494.0
4 TraesCS1A01G192500 chr1B 89.238 223 18 4 4108 4329 374855013 374854796 1.600000e-69 274.0
5 TraesCS1A01G192500 chr1B 93.902 164 10 0 3444 3607 374857448 374857285 9.710000e-62 248.0
6 TraesCS1A01G192500 chr1B 93.168 161 7 3 858 1015 374861177 374861018 2.720000e-57 233.0
7 TraesCS1A01G192500 chr1B 93.548 155 5 2 4372 4521 374849984 374849830 4.550000e-55 226.0
8 TraesCS1A01G192500 chr1B 81.707 82 13 2 702 782 573579495 573579575 2.920000e-07 67.6
9 TraesCS1A01G192500 chr1D 91.172 2039 98 22 857 2870 275605897 275603916 0.000000e+00 2693.0
10 TraesCS1A01G192500 chr1D 91.935 992 39 16 2856 3833 275598120 275597156 0.000000e+00 1351.0
11 TraesCS1A01G192500 chr1D 85.447 694 59 15 3831 4521 275597247 275596593 0.000000e+00 684.0
12 TraesCS1A01G192500 chr1D 87.719 513 43 11 18 522 275620832 275620332 8.430000e-162 580.0
13 TraesCS1A01G192500 chr1D 93.000 300 12 4 2566 2860 275603520 275603225 3.230000e-116 429.0
14 TraesCS1A01G192500 chr1D 97.674 43 1 0 2566 2608 275603920 275603878 1.740000e-09 75.0
15 TraesCS1A01G192500 chr2A 89.011 91 9 1 3358 3447 78845774 78845864 1.330000e-20 111.0
16 TraesCS1A01G192500 chr3D 88.764 89 10 0 3359 3447 157099356 157099444 4.780000e-20 110.0
17 TraesCS1A01G192500 chr3D 87.500 88 11 0 3360 3447 250923047 250923134 8.000000e-18 102.0
18 TraesCS1A01G192500 chr3B 88.636 88 10 0 3360 3447 312161298 312161385 1.720000e-19 108.0
19 TraesCS1A01G192500 chr3B 86.957 92 10 2 3360 3451 59446050 59445961 8.000000e-18 102.0
20 TraesCS1A01G192500 chr3A 88.636 88 10 0 3360 3447 333321375 333321288 1.720000e-19 108.0
21 TraesCS1A01G192500 chr2D 87.912 91 10 1 3358 3447 78563828 78563918 6.190000e-19 106.0
22 TraesCS1A01G192500 chr6D 86.905 84 11 0 698 781 114229348 114229431 1.340000e-15 95.3
23 TraesCS1A01G192500 chr6D 100.000 28 0 0 755 782 453756408 453756381 8.000000e-03 52.8
24 TraesCS1A01G192500 chr2B 88.571 70 8 0 713 782 14522809 14522740 8.060000e-13 86.1
25 TraesCS1A01G192500 chr7B 88.889 45 5 0 1561 1605 149935372 149935328 6.320000e-04 56.5
26 TraesCS1A01G192500 chr6B 88.889 45 5 0 1561 1605 157564903 157564859 6.320000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G192500 chr1A 347917290 347921810 4520 True 2863.666667 8349 93.548667 1 4521 3 chr1A.!!$R1 4520
1 TraesCS1A01G192500 chr1B 374854796 374861177 6381 True 1062.250000 3494 92.461750 858 4329 4 chr1B.!!$R2 3471
2 TraesCS1A01G192500 chr1D 275603225 275605897 2672 True 1065.666667 2693 93.948667 857 2870 3 chr1D.!!$R3 2013
3 TraesCS1A01G192500 chr1D 275596593 275598120 1527 True 1017.500000 1351 88.691000 2856 4521 2 chr1D.!!$R2 1665
4 TraesCS1A01G192500 chr1D 275620332 275620832 500 True 580.000000 580 87.719000 18 522 1 chr1D.!!$R1 504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
662 670 0.030909 TTACATCCGGGCTTAGGGGA 60.031 55.0 0.00 0.0 0.00 4.81 F
715 723 0.031043 TGTGCAAGATGCTGTTGTGC 59.969 50.0 3.78 0.0 45.31 4.57 F
733 741 0.109781 GCGTGATGTCCGTGCAAAAT 60.110 50.0 0.00 0.0 0.00 1.82 F
851 859 0.309922 CATCGAATGCACATGAGGCC 59.690 55.0 0.00 0.0 0.00 5.19 F
1798 3054 0.388134 GTCGCCGCTCAGTAAAGACA 60.388 55.0 0.00 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1993 3249 1.219646 GGCGTTTCACCGACAAAGTA 58.780 50.000 0.00 0.0 35.41 2.24 R
2139 3402 1.304052 AACCTGGCGCATAAAGGCA 60.304 52.632 10.83 0.0 42.00 4.75 R
2206 3469 3.901844 AGGAAAGTACCAGAACAGTGCTA 59.098 43.478 0.00 0.0 29.39 3.49 R
2758 4028 2.711547 GGGTGTCCTGGCTAAATATCCT 59.288 50.000 0.00 0.0 0.00 3.24 R
3702 5460 0.108585 TGCACGGCTTCTTTCCTCTT 59.891 50.000 0.00 0.0 0.00 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.255304 GGAAGTAAATCTTGATCTATCACTGAC 57.745 37.037 0.00 0.00 36.36 3.51
51 52 8.420222 ACAGAAAATGTCACATTTTTATCACCA 58.580 29.630 25.76 0.00 37.75 4.17
211 212 6.884295 TGTGTTATTTTTAGGGATGAGACCAG 59.116 38.462 0.00 0.00 0.00 4.00
241 242 1.677300 CATTGTTGCCGGTGCCCTA 60.677 57.895 1.90 0.00 36.33 3.53
242 243 1.037030 CATTGTTGCCGGTGCCCTAT 61.037 55.000 1.90 0.00 36.33 2.57
243 244 0.548989 ATTGTTGCCGGTGCCCTATA 59.451 50.000 1.90 0.00 36.33 1.31
244 245 0.328592 TTGTTGCCGGTGCCCTATAA 59.671 50.000 1.90 0.00 36.33 0.98
245 246 0.328592 TGTTGCCGGTGCCCTATAAA 59.671 50.000 1.90 0.00 36.33 1.40
246 247 1.271982 TGTTGCCGGTGCCCTATAAAA 60.272 47.619 1.90 0.00 36.33 1.52
247 248 2.028876 GTTGCCGGTGCCCTATAAAAT 58.971 47.619 1.90 0.00 36.33 1.82
248 249 1.975660 TGCCGGTGCCCTATAAAATC 58.024 50.000 1.90 0.00 36.33 2.17
249 250 0.872388 GCCGGTGCCCTATAAAATCG 59.128 55.000 1.90 0.00 0.00 3.34
250 251 1.519408 CCGGTGCCCTATAAAATCGG 58.481 55.000 0.00 0.00 0.00 4.18
251 252 1.202722 CCGGTGCCCTATAAAATCGGT 60.203 52.381 0.00 0.00 0.00 4.69
252 253 1.871039 CGGTGCCCTATAAAATCGGTG 59.129 52.381 0.00 0.00 0.00 4.94
253 254 1.607148 GGTGCCCTATAAAATCGGTGC 59.393 52.381 0.00 0.00 0.00 5.01
257 258 1.880027 CCCTATAAAATCGGTGCAGGC 59.120 52.381 0.00 0.00 0.00 4.85
280 281 2.091994 AGCTATGCTCCTTCCTTGCATT 60.092 45.455 5.02 0.00 43.85 3.56
290 291 3.624777 CTTCCTTGCATTGTCCACCTAT 58.375 45.455 0.00 0.00 0.00 2.57
291 292 4.385199 CCTTCCTTGCATTGTCCACCTATA 60.385 45.833 0.00 0.00 0.00 1.31
305 306 4.140782 TCCACCTATATCTTGGCAGTCCTA 60.141 45.833 0.00 0.00 0.00 2.94
319 320 4.113354 GCAGTCCTAGTAAAACTGGATCG 58.887 47.826 11.56 0.00 40.57 3.69
327 328 0.899720 AAAACTGGATCGGCGACCTA 59.100 50.000 13.76 0.00 0.00 3.08
478 486 0.909623 ACCCTCTCATAAACGGTGGG 59.090 55.000 0.00 0.00 39.05 4.61
515 523 2.722548 CGACTCATACGCGCGAGG 60.723 66.667 39.36 23.96 33.36 4.63
516 524 2.713770 GACTCATACGCGCGAGGA 59.286 61.111 39.36 26.65 33.36 3.71
517 525 1.369448 GACTCATACGCGCGAGGAG 60.369 63.158 39.36 34.55 33.36 3.69
527 535 3.775654 GCGAGGAGGGGTGGTGAG 61.776 72.222 0.00 0.00 0.00 3.51
528 536 3.077556 CGAGGAGGGGTGGTGAGG 61.078 72.222 0.00 0.00 0.00 3.86
529 537 2.689034 GAGGAGGGGTGGTGAGGG 60.689 72.222 0.00 0.00 0.00 4.30
530 538 4.354943 AGGAGGGGTGGTGAGGGG 62.355 72.222 0.00 0.00 0.00 4.79
531 539 4.677151 GGAGGGGTGGTGAGGGGT 62.677 72.222 0.00 0.00 0.00 4.95
532 540 2.531942 GAGGGGTGGTGAGGGGTT 60.532 66.667 0.00 0.00 0.00 4.11
533 541 2.531942 AGGGGTGGTGAGGGGTTC 60.532 66.667 0.00 0.00 0.00 3.62
534 542 4.029809 GGGGTGGTGAGGGGTTCG 62.030 72.222 0.00 0.00 0.00 3.95
535 543 3.246880 GGGTGGTGAGGGGTTCGT 61.247 66.667 0.00 0.00 0.00 3.85
536 544 1.914764 GGGTGGTGAGGGGTTCGTA 60.915 63.158 0.00 0.00 0.00 3.43
537 545 1.482748 GGGTGGTGAGGGGTTCGTAA 61.483 60.000 0.00 0.00 0.00 3.18
538 546 0.616891 GGTGGTGAGGGGTTCGTAAT 59.383 55.000 0.00 0.00 0.00 1.89
539 547 1.003928 GGTGGTGAGGGGTTCGTAATT 59.996 52.381 0.00 0.00 0.00 1.40
540 548 2.553685 GGTGGTGAGGGGTTCGTAATTT 60.554 50.000 0.00 0.00 0.00 1.82
541 549 2.745821 GTGGTGAGGGGTTCGTAATTTC 59.254 50.000 0.00 0.00 0.00 2.17
542 550 2.372504 TGGTGAGGGGTTCGTAATTTCA 59.627 45.455 0.00 0.00 0.00 2.69
543 551 3.007635 GGTGAGGGGTTCGTAATTTCAG 58.992 50.000 0.00 0.00 0.00 3.02
544 552 3.307199 GGTGAGGGGTTCGTAATTTCAGA 60.307 47.826 0.00 0.00 0.00 3.27
545 553 4.320870 GTGAGGGGTTCGTAATTTCAGAA 58.679 43.478 0.00 0.00 0.00 3.02
546 554 4.392138 GTGAGGGGTTCGTAATTTCAGAAG 59.608 45.833 0.00 0.00 0.00 2.85
547 555 4.285003 TGAGGGGTTCGTAATTTCAGAAGA 59.715 41.667 0.00 0.00 0.00 2.87
548 556 5.221762 TGAGGGGTTCGTAATTTCAGAAGAA 60.222 40.000 0.00 0.00 0.00 2.52
549 557 5.816682 AGGGGTTCGTAATTTCAGAAGAAT 58.183 37.500 0.00 0.00 32.89 2.40
550 558 5.880887 AGGGGTTCGTAATTTCAGAAGAATC 59.119 40.000 0.00 0.00 32.89 2.52
551 559 5.646360 GGGGTTCGTAATTTCAGAAGAATCA 59.354 40.000 0.00 0.00 32.89 2.57
552 560 6.318900 GGGGTTCGTAATTTCAGAAGAATCAT 59.681 38.462 0.00 0.00 32.89 2.45
553 561 7.148069 GGGGTTCGTAATTTCAGAAGAATCATT 60.148 37.037 0.00 0.00 32.89 2.57
554 562 8.889717 GGGTTCGTAATTTCAGAAGAATCATTA 58.110 33.333 0.00 0.00 32.89 1.90
555 563 9.704098 GGTTCGTAATTTCAGAAGAATCATTAC 57.296 33.333 5.21 5.21 35.76 1.89
556 564 9.704098 GTTCGTAATTTCAGAAGAATCATTACC 57.296 33.333 8.26 0.00 35.73 2.85
557 565 8.126871 TCGTAATTTCAGAAGAATCATTACCG 57.873 34.615 8.26 5.40 35.73 4.02
558 566 6.846283 CGTAATTTCAGAAGAATCATTACCGC 59.154 38.462 8.26 0.00 35.73 5.68
559 567 6.757897 AATTTCAGAAGAATCATTACCGCA 57.242 33.333 0.00 0.00 32.89 5.69
560 568 6.757897 ATTTCAGAAGAATCATTACCGCAA 57.242 33.333 0.00 0.00 32.89 4.85
561 569 5.801350 TTCAGAAGAATCATTACCGCAAG 57.199 39.130 0.00 0.00 0.00 4.01
562 570 5.084818 TCAGAAGAATCATTACCGCAAGA 57.915 39.130 0.00 0.00 43.02 3.02
563 571 4.870426 TCAGAAGAATCATTACCGCAAGAC 59.130 41.667 0.00 0.00 43.02 3.01
564 572 4.631377 CAGAAGAATCATTACCGCAAGACA 59.369 41.667 0.00 0.00 43.02 3.41
565 573 5.295292 CAGAAGAATCATTACCGCAAGACAT 59.705 40.000 0.00 0.00 43.02 3.06
566 574 6.479990 CAGAAGAATCATTACCGCAAGACATA 59.520 38.462 0.00 0.00 43.02 2.29
567 575 6.480320 AGAAGAATCATTACCGCAAGACATAC 59.520 38.462 0.00 0.00 43.02 2.39
568 576 5.670485 AGAATCATTACCGCAAGACATACA 58.330 37.500 0.00 0.00 43.02 2.29
569 577 5.755375 AGAATCATTACCGCAAGACATACAG 59.245 40.000 0.00 0.00 43.02 2.74
570 578 4.729227 TCATTACCGCAAGACATACAGA 57.271 40.909 0.00 0.00 43.02 3.41
571 579 4.682787 TCATTACCGCAAGACATACAGAG 58.317 43.478 0.00 0.00 43.02 3.35
572 580 3.520290 TTACCGCAAGACATACAGAGG 57.480 47.619 0.00 0.00 43.02 3.69
573 581 0.537188 ACCGCAAGACATACAGAGGG 59.463 55.000 0.00 0.00 43.02 4.30
574 582 0.537188 CCGCAAGACATACAGAGGGT 59.463 55.000 0.00 0.00 43.02 4.34
575 583 1.645034 CGCAAGACATACAGAGGGTG 58.355 55.000 0.00 0.00 43.02 4.61
576 584 1.066858 CGCAAGACATACAGAGGGTGT 60.067 52.381 0.00 0.00 41.56 4.16
577 585 2.165641 CGCAAGACATACAGAGGGTGTA 59.834 50.000 0.00 0.00 43.25 2.90
583 591 2.896278 TACAGAGGGTGTATGCGCT 58.104 52.632 9.73 0.00 40.94 5.92
584 592 2.061509 TACAGAGGGTGTATGCGCTA 57.938 50.000 9.73 0.00 40.94 4.26
585 593 0.747255 ACAGAGGGTGTATGCGCTAG 59.253 55.000 9.73 0.00 37.75 3.42
586 594 0.032678 CAGAGGGTGTATGCGCTAGG 59.967 60.000 9.73 0.00 0.00 3.02
587 595 0.397254 AGAGGGTGTATGCGCTAGGT 60.397 55.000 9.73 0.00 0.00 3.08
588 596 0.032267 GAGGGTGTATGCGCTAGGTC 59.968 60.000 9.73 0.00 0.00 3.85
589 597 1.299926 GGGTGTATGCGCTAGGTCG 60.300 63.158 9.73 0.00 0.00 4.79
599 607 2.160918 CGCTAGGTCGCTATACATCG 57.839 55.000 0.00 0.00 0.00 3.84
600 608 1.202043 CGCTAGGTCGCTATACATCGG 60.202 57.143 0.00 0.00 0.00 4.18
601 609 1.467713 GCTAGGTCGCTATACATCGGC 60.468 57.143 0.00 0.00 0.00 5.54
602 610 4.573162 GGTCGCTATACATCGGCC 57.427 61.111 0.00 0.00 43.49 6.13
603 611 1.965219 GGTCGCTATACATCGGCCT 59.035 57.895 0.00 0.00 46.05 5.19
604 612 1.171308 GGTCGCTATACATCGGCCTA 58.829 55.000 0.00 0.00 46.05 3.93
605 613 1.135460 GGTCGCTATACATCGGCCTAC 60.135 57.143 0.00 0.00 46.05 3.18
606 614 1.538512 GTCGCTATACATCGGCCTACA 59.461 52.381 0.00 0.00 0.00 2.74
607 615 1.538512 TCGCTATACATCGGCCTACAC 59.461 52.381 0.00 0.00 0.00 2.90
608 616 1.728179 CGCTATACATCGGCCTACACG 60.728 57.143 0.00 0.00 0.00 4.49
609 617 1.978542 CTATACATCGGCCTACACGC 58.021 55.000 0.00 0.00 0.00 5.34
610 618 0.599558 TATACATCGGCCTACACGCC 59.400 55.000 0.00 0.00 46.13 5.68
618 626 3.772619 GCCTACACGCCAAATAGGA 57.227 52.632 0.64 0.00 41.22 2.94
619 627 1.583054 GCCTACACGCCAAATAGGAG 58.417 55.000 0.64 0.00 43.77 3.69
620 628 1.583054 CCTACACGCCAAATAGGAGC 58.417 55.000 0.00 0.00 41.55 4.70
621 629 1.583054 CTACACGCCAAATAGGAGCC 58.417 55.000 0.00 0.00 41.55 4.70
622 630 0.906066 TACACGCCAAATAGGAGCCA 59.094 50.000 0.00 0.00 41.55 4.75
623 631 0.676782 ACACGCCAAATAGGAGCCAC 60.677 55.000 0.00 0.00 41.55 5.01
624 632 1.449601 ACGCCAAATAGGAGCCACG 60.450 57.895 0.00 0.00 41.55 4.94
625 633 2.823829 CGCCAAATAGGAGCCACGC 61.824 63.158 0.00 0.00 41.22 5.34
626 634 1.452108 GCCAAATAGGAGCCACGCT 60.452 57.895 0.00 0.00 43.88 5.07
627 635 0.179056 GCCAAATAGGAGCCACGCTA 60.179 55.000 0.00 0.00 39.88 4.26
628 636 1.543429 GCCAAATAGGAGCCACGCTAT 60.543 52.381 0.00 0.00 39.88 2.97
629 637 2.851195 CCAAATAGGAGCCACGCTATT 58.149 47.619 0.00 0.00 39.88 1.73
630 638 2.549754 CCAAATAGGAGCCACGCTATTG 59.450 50.000 0.00 0.00 39.88 1.90
631 639 2.549754 CAAATAGGAGCCACGCTATTGG 59.450 50.000 0.00 0.00 39.88 3.16
632 640 1.717032 ATAGGAGCCACGCTATTGGA 58.283 50.000 0.26 0.00 39.88 3.53
633 641 0.750850 TAGGAGCCACGCTATTGGAC 59.249 55.000 0.26 0.00 39.88 4.02
634 642 1.883084 GGAGCCACGCTATTGGACG 60.883 63.158 0.26 0.00 39.88 4.79
635 643 1.153628 GAGCCACGCTATTGGACGT 60.154 57.895 0.00 0.00 44.75 4.34
636 644 0.739813 GAGCCACGCTATTGGACGTT 60.740 55.000 0.00 0.00 41.32 3.99
637 645 1.019278 AGCCACGCTATTGGACGTTG 61.019 55.000 0.00 0.00 41.32 4.10
638 646 1.423845 CCACGCTATTGGACGTTGC 59.576 57.895 0.00 0.00 41.32 4.17
639 647 1.019278 CCACGCTATTGGACGTTGCT 61.019 55.000 0.00 0.00 41.32 3.91
640 648 1.635844 CACGCTATTGGACGTTGCTA 58.364 50.000 0.00 0.00 41.32 3.49
641 649 1.996898 CACGCTATTGGACGTTGCTAA 59.003 47.619 0.00 0.00 41.32 3.09
642 650 2.607635 CACGCTATTGGACGTTGCTAAT 59.392 45.455 0.00 0.00 41.32 1.73
643 651 3.063452 CACGCTATTGGACGTTGCTAATT 59.937 43.478 0.00 0.00 41.32 1.40
644 652 3.687698 ACGCTATTGGACGTTGCTAATTT 59.312 39.130 0.00 0.00 40.09 1.82
645 653 4.871557 ACGCTATTGGACGTTGCTAATTTA 59.128 37.500 0.00 0.00 40.09 1.40
646 654 5.195379 CGCTATTGGACGTTGCTAATTTAC 58.805 41.667 0.00 0.00 0.00 2.01
647 655 5.220510 CGCTATTGGACGTTGCTAATTTACA 60.221 40.000 0.00 0.00 0.00 2.41
648 656 6.511121 CGCTATTGGACGTTGCTAATTTACAT 60.511 38.462 0.00 0.00 0.00 2.29
649 657 6.851330 GCTATTGGACGTTGCTAATTTACATC 59.149 38.462 0.00 0.00 0.00 3.06
650 658 5.554822 TTGGACGTTGCTAATTTACATCC 57.445 39.130 0.00 0.00 0.00 3.51
651 659 3.619483 TGGACGTTGCTAATTTACATCCG 59.381 43.478 0.00 0.00 0.00 4.18
652 660 3.001939 GGACGTTGCTAATTTACATCCGG 59.998 47.826 0.00 0.00 0.00 5.14
653 661 2.940410 ACGTTGCTAATTTACATCCGGG 59.060 45.455 0.00 0.00 0.00 5.73
654 662 2.286772 CGTTGCTAATTTACATCCGGGC 60.287 50.000 0.00 0.00 0.00 6.13
655 663 2.949644 GTTGCTAATTTACATCCGGGCT 59.050 45.455 0.00 0.00 0.00 5.19
656 664 3.290948 TGCTAATTTACATCCGGGCTT 57.709 42.857 0.00 0.00 0.00 4.35
657 665 4.425180 TGCTAATTTACATCCGGGCTTA 57.575 40.909 0.00 0.00 0.00 3.09
658 666 4.385825 TGCTAATTTACATCCGGGCTTAG 58.614 43.478 0.00 0.45 0.00 2.18
659 667 3.751698 GCTAATTTACATCCGGGCTTAGG 59.248 47.826 0.00 0.00 0.00 2.69
660 668 2.951229 ATTTACATCCGGGCTTAGGG 57.049 50.000 0.00 0.00 0.00 3.53
661 669 0.841289 TTTACATCCGGGCTTAGGGG 59.159 55.000 0.00 0.00 0.00 4.79
662 670 0.030909 TTACATCCGGGCTTAGGGGA 60.031 55.000 0.00 0.00 0.00 4.81
663 671 0.192566 TACATCCGGGCTTAGGGGAT 59.807 55.000 0.00 0.00 41.16 3.85
664 672 3.906980 ATCCGGGCTTAGGGGATG 58.093 61.111 0.00 0.00 39.07 3.51
665 673 1.847968 ATCCGGGCTTAGGGGATGG 60.848 63.158 0.00 0.00 39.07 3.51
666 674 2.340909 ATCCGGGCTTAGGGGATGGA 62.341 60.000 0.00 0.00 39.07 3.41
667 675 1.847968 CCGGGCTTAGGGGATGGAT 60.848 63.158 0.00 0.00 0.00 3.41
668 676 0.546747 CCGGGCTTAGGGGATGGATA 60.547 60.000 0.00 0.00 0.00 2.59
669 677 0.905357 CGGGCTTAGGGGATGGATAG 59.095 60.000 0.00 0.00 0.00 2.08
670 678 1.831697 CGGGCTTAGGGGATGGATAGT 60.832 57.143 0.00 0.00 0.00 2.12
671 679 2.559026 CGGGCTTAGGGGATGGATAGTA 60.559 54.545 0.00 0.00 0.00 1.82
672 680 3.527937 GGGCTTAGGGGATGGATAGTAA 58.472 50.000 0.00 0.00 0.00 2.24
673 681 3.914435 GGGCTTAGGGGATGGATAGTAAA 59.086 47.826 0.00 0.00 0.00 2.01
674 682 4.352893 GGGCTTAGGGGATGGATAGTAAAA 59.647 45.833 0.00 0.00 0.00 1.52
675 683 5.015284 GGGCTTAGGGGATGGATAGTAAAAT 59.985 44.000 0.00 0.00 0.00 1.82
676 684 6.181190 GGCTTAGGGGATGGATAGTAAAATC 58.819 44.000 0.00 0.00 0.00 2.17
677 685 6.240176 GGCTTAGGGGATGGATAGTAAAATCA 60.240 42.308 0.00 0.00 0.00 2.57
678 686 7.406104 GCTTAGGGGATGGATAGTAAAATCAT 58.594 38.462 0.00 0.00 0.00 2.45
679 687 7.337942 GCTTAGGGGATGGATAGTAAAATCATG 59.662 40.741 0.00 0.00 0.00 3.07
680 688 8.518720 TTAGGGGATGGATAGTAAAATCATGA 57.481 34.615 0.00 0.00 0.00 3.07
681 689 7.406620 AGGGGATGGATAGTAAAATCATGAA 57.593 36.000 0.00 0.00 0.00 2.57
682 690 7.825709 AGGGGATGGATAGTAAAATCATGAAA 58.174 34.615 0.00 0.00 0.00 2.69
683 691 8.288812 AGGGGATGGATAGTAAAATCATGAAAA 58.711 33.333 0.00 0.00 0.00 2.29
684 692 8.923270 GGGGATGGATAGTAAAATCATGAAAAA 58.077 33.333 0.00 0.00 0.00 1.94
713 721 3.738830 AAATGTGCAAGATGCTGTTGT 57.261 38.095 3.78 0.00 45.31 3.32
714 722 2.717580 ATGTGCAAGATGCTGTTGTG 57.282 45.000 3.78 0.00 45.31 3.33
715 723 0.031043 TGTGCAAGATGCTGTTGTGC 59.969 50.000 3.78 0.00 45.31 4.57
716 724 1.000233 GTGCAAGATGCTGTTGTGCG 61.000 55.000 3.78 0.00 45.31 5.34
717 725 1.283793 GCAAGATGCTGTTGTGCGT 59.716 52.632 0.00 0.00 40.96 5.24
718 726 1.000233 GCAAGATGCTGTTGTGCGTG 61.000 55.000 0.00 0.00 40.96 5.34
719 727 0.587768 CAAGATGCTGTTGTGCGTGA 59.412 50.000 0.00 0.00 35.36 4.35
720 728 1.198408 CAAGATGCTGTTGTGCGTGAT 59.802 47.619 0.00 0.00 35.36 3.06
721 729 0.800631 AGATGCTGTTGTGCGTGATG 59.199 50.000 0.00 0.00 35.36 3.07
722 730 0.518636 GATGCTGTTGTGCGTGATGT 59.481 50.000 0.00 0.00 35.36 3.06
723 731 0.518636 ATGCTGTTGTGCGTGATGTC 59.481 50.000 0.00 0.00 35.36 3.06
724 732 1.207593 GCTGTTGTGCGTGATGTCC 59.792 57.895 0.00 0.00 0.00 4.02
725 733 1.492873 CTGTTGTGCGTGATGTCCG 59.507 57.895 0.00 0.00 0.00 4.79
726 734 1.221466 CTGTTGTGCGTGATGTCCGT 61.221 55.000 0.00 0.00 0.00 4.69
727 735 1.204062 GTTGTGCGTGATGTCCGTG 59.796 57.895 0.00 0.00 0.00 4.94
728 736 2.603247 TTGTGCGTGATGTCCGTGC 61.603 57.895 0.00 0.00 0.00 5.34
729 737 3.041351 GTGCGTGATGTCCGTGCA 61.041 61.111 0.00 0.00 0.00 4.57
730 738 2.280457 TGCGTGATGTCCGTGCAA 60.280 55.556 0.00 0.00 31.69 4.08
731 739 1.889573 TGCGTGATGTCCGTGCAAA 60.890 52.632 0.00 0.00 31.69 3.68
732 740 1.281353 GCGTGATGTCCGTGCAAAA 59.719 52.632 0.00 0.00 0.00 2.44
733 741 0.109781 GCGTGATGTCCGTGCAAAAT 60.110 50.000 0.00 0.00 0.00 1.82
734 742 1.665735 GCGTGATGTCCGTGCAAAATT 60.666 47.619 0.00 0.00 0.00 1.82
735 743 2.660490 CGTGATGTCCGTGCAAAATTT 58.340 42.857 0.00 0.00 0.00 1.82
736 744 2.404693 CGTGATGTCCGTGCAAAATTTG 59.595 45.455 0.57 0.57 0.00 2.32
737 745 3.637432 GTGATGTCCGTGCAAAATTTGA 58.363 40.909 10.26 0.00 0.00 2.69
738 746 4.236935 GTGATGTCCGTGCAAAATTTGAT 58.763 39.130 10.26 0.00 0.00 2.57
739 747 4.090354 GTGATGTCCGTGCAAAATTTGATG 59.910 41.667 10.26 0.84 0.00 3.07
740 748 3.998099 TGTCCGTGCAAAATTTGATGA 57.002 38.095 10.26 0.00 0.00 2.92
741 749 4.313277 TGTCCGTGCAAAATTTGATGAA 57.687 36.364 10.26 0.00 0.00 2.57
742 750 4.686972 TGTCCGTGCAAAATTTGATGAAA 58.313 34.783 10.26 0.00 0.00 2.69
743 751 4.505922 TGTCCGTGCAAAATTTGATGAAAC 59.494 37.500 10.26 2.50 0.00 2.78
744 752 4.744631 GTCCGTGCAAAATTTGATGAAACT 59.255 37.500 10.26 0.00 0.00 2.66
745 753 5.234116 GTCCGTGCAAAATTTGATGAAACTT 59.766 36.000 10.26 0.00 0.00 2.66
746 754 5.233902 TCCGTGCAAAATTTGATGAAACTTG 59.766 36.000 10.26 0.00 0.00 3.16
747 755 5.233902 CCGTGCAAAATTTGATGAAACTTGA 59.766 36.000 10.26 0.00 0.00 3.02
748 756 6.238049 CCGTGCAAAATTTGATGAAACTTGAA 60.238 34.615 10.26 0.00 0.00 2.69
749 757 6.624526 CGTGCAAAATTTGATGAAACTTGAAC 59.375 34.615 10.26 4.63 29.60 3.18
750 758 7.462731 GTGCAAAATTTGATGAAACTTGAACA 58.537 30.769 10.26 0.00 31.52 3.18
751 759 8.124199 GTGCAAAATTTGATGAAACTTGAACAT 58.876 29.630 10.26 0.00 31.52 2.71
752 760 8.336806 TGCAAAATTTGATGAAACTTGAACATC 58.663 29.630 10.26 0.00 40.22 3.06
753 761 8.553696 GCAAAATTTGATGAAACTTGAACATCT 58.446 29.630 10.26 0.00 40.39 2.90
754 762 9.858247 CAAAATTTGATGAAACTTGAACATCTG 57.142 29.630 0.00 0.00 40.39 2.90
755 763 9.820725 AAAATTTGATGAAACTTGAACATCTGA 57.179 25.926 0.00 0.00 40.39 3.27
756 764 9.472361 AAATTTGATGAAACTTGAACATCTGAG 57.528 29.630 0.00 0.00 40.39 3.35
757 765 7.806409 TTTGATGAAACTTGAACATCTGAGA 57.194 32.000 0.00 0.00 40.39 3.27
758 766 7.806409 TTGATGAAACTTGAACATCTGAGAA 57.194 32.000 0.00 0.00 40.39 2.87
759 767 7.430992 TGATGAAACTTGAACATCTGAGAAG 57.569 36.000 0.00 0.00 40.39 2.85
760 768 5.679734 TGAAACTTGAACATCTGAGAAGC 57.320 39.130 0.00 0.00 0.00 3.86
761 769 5.371526 TGAAACTTGAACATCTGAGAAGCT 58.628 37.500 0.00 0.00 0.00 3.74
762 770 5.468072 TGAAACTTGAACATCTGAGAAGCTC 59.532 40.000 0.00 0.00 0.00 4.09
763 771 4.613925 ACTTGAACATCTGAGAAGCTCA 57.386 40.909 0.00 0.00 38.25 4.26
764 772 5.163281 ACTTGAACATCTGAGAAGCTCAT 57.837 39.130 0.00 0.00 39.92 2.90
765 773 4.936411 ACTTGAACATCTGAGAAGCTCATG 59.064 41.667 0.00 3.44 39.92 3.07
766 774 3.870274 TGAACATCTGAGAAGCTCATGG 58.130 45.455 0.00 0.00 39.92 3.66
767 775 2.328819 ACATCTGAGAAGCTCATGGC 57.671 50.000 0.00 0.00 39.92 4.40
768 776 1.558294 ACATCTGAGAAGCTCATGGCA 59.442 47.619 8.58 0.00 39.92 4.92
769 777 2.026542 ACATCTGAGAAGCTCATGGCAA 60.027 45.455 8.58 0.00 39.92 4.52
770 778 2.865119 TCTGAGAAGCTCATGGCAAA 57.135 45.000 8.58 0.00 39.92 3.68
771 779 3.144657 TCTGAGAAGCTCATGGCAAAA 57.855 42.857 8.58 0.00 39.92 2.44
772 780 3.489355 TCTGAGAAGCTCATGGCAAAAA 58.511 40.909 8.58 0.00 39.92 1.94
840 848 9.672086 TTTTTAGGTTTTACTGTTCATCGAATG 57.328 29.630 0.00 0.00 0.00 2.67
841 849 5.296813 AGGTTTTACTGTTCATCGAATGC 57.703 39.130 0.00 0.00 0.00 3.56
842 850 4.759693 AGGTTTTACTGTTCATCGAATGCA 59.240 37.500 0.00 0.00 0.00 3.96
843 851 4.851558 GGTTTTACTGTTCATCGAATGCAC 59.148 41.667 0.00 0.00 0.00 4.57
844 852 5.448438 GTTTTACTGTTCATCGAATGCACA 58.552 37.500 0.00 0.00 35.24 4.57
845 853 5.878332 TTTACTGTTCATCGAATGCACAT 57.122 34.783 0.00 0.00 35.93 3.21
846 854 3.752412 ACTGTTCATCGAATGCACATG 57.248 42.857 0.00 0.00 35.93 3.21
847 855 3.337358 ACTGTTCATCGAATGCACATGA 58.663 40.909 0.00 0.00 35.93 3.07
848 856 3.373130 ACTGTTCATCGAATGCACATGAG 59.627 43.478 0.00 0.00 35.93 2.90
849 857 2.679336 TGTTCATCGAATGCACATGAGG 59.321 45.455 0.00 0.00 31.61 3.86
850 858 1.302366 TCATCGAATGCACATGAGGC 58.698 50.000 0.00 3.11 0.00 4.70
851 859 0.309922 CATCGAATGCACATGAGGCC 59.690 55.000 0.00 0.00 0.00 5.19
852 860 1.162181 ATCGAATGCACATGAGGCCG 61.162 55.000 0.00 2.54 0.00 6.13
853 861 2.827051 CGAATGCACATGAGGCCGG 61.827 63.158 0.00 0.00 0.00 6.13
854 862 2.440796 AATGCACATGAGGCCGGG 60.441 61.111 2.18 0.00 0.00 5.73
909 917 3.241530 TGCTGGTCTTCGTGGCCT 61.242 61.111 3.32 0.00 42.07 5.19
950 959 0.884704 TCTTTGGTCGCCTTGTGCTC 60.885 55.000 0.00 0.00 38.05 4.26
951 960 2.175184 CTTTGGTCGCCTTGTGCTCG 62.175 60.000 0.00 0.00 38.05 5.03
1032 2271 1.268386 TGACGGAGAAATAGCTACGCG 60.268 52.381 3.53 3.53 46.03 6.01
1192 2440 2.760385 CTCCCGGTCCACCTCCTC 60.760 72.222 0.00 0.00 0.00 3.71
1374 2630 2.203549 CTGGCAGGAGGAAAGGGACC 62.204 65.000 6.61 0.00 0.00 4.46
1491 2747 2.732619 GCCTTCTCGGTCGGGGATT 61.733 63.158 0.00 0.00 34.25 3.01
1525 2781 1.064060 CAATTCCTCCCGCGATTGTTC 59.936 52.381 8.23 0.00 0.00 3.18
1531 2787 2.618053 CTCCCGCGATTGTTCTAACTT 58.382 47.619 8.23 0.00 0.00 2.66
1542 2798 7.222654 CGATTGTTCTAACTTGTTAACGTACC 58.777 38.462 0.26 0.00 0.00 3.34
1609 2865 4.941873 ACTCCACGGATGAAGGTAAAAATC 59.058 41.667 0.00 0.00 0.00 2.17
1647 2903 1.808411 TCTTTCTTAGGCTTGCACCG 58.192 50.000 0.00 0.00 33.69 4.94
1649 2905 0.398696 TTTCTTAGGCTTGCACCGGA 59.601 50.000 9.46 0.00 33.69 5.14
1662 2918 1.880027 GCACCGGAGTCAAATTTCTGT 59.120 47.619 9.46 0.00 0.00 3.41
1669 2925 5.231991 CCGGAGTCAAATTTCTGTGTTTTTG 59.768 40.000 0.00 0.00 0.00 2.44
1694 2950 7.879160 TGTACTAGAATTCGGTGTATTGGTTTT 59.121 33.333 14.40 0.00 0.00 2.43
1701 2957 2.227865 CGGTGTATTGGTTTTGGTGGAG 59.772 50.000 0.00 0.00 0.00 3.86
1727 2983 6.112734 TGAAAACAGAAGCTGAGTTCAGTTA 58.887 36.000 10.57 0.00 45.45 2.24
1735 2991 8.602328 CAGAAGCTGAGTTCAGTTAGAATTATG 58.398 37.037 10.57 2.02 45.45 1.90
1798 3054 0.388134 GTCGCCGCTCAGTAAAGACA 60.388 55.000 0.00 0.00 0.00 3.41
1806 3062 5.522460 GCCGCTCAGTAAAGACAATTGTATA 59.478 40.000 11.95 2.68 0.00 1.47
1854 3110 4.879598 AGTACTAGTGAAGTTCCAAACGG 58.120 43.478 5.39 0.00 39.80 4.44
1878 3134 5.404946 CACCAAGGAAAAGATGCACAATAG 58.595 41.667 0.00 0.00 0.00 1.73
1890 3146 8.830201 AAGATGCACAATAGATTCTAAGCTAG 57.170 34.615 0.00 0.00 29.47 3.42
1935 3191 2.547642 GCATGGGCTCTCTAGTGATGTC 60.548 54.545 0.00 0.00 36.96 3.06
2010 3267 2.155155 GCTCTACTTTGTCGGTGAAACG 59.845 50.000 0.00 0.00 38.12 3.60
2374 3638 4.397420 TGTGTTGGTGAGCAATCTAATGT 58.603 39.130 0.00 0.00 0.00 2.71
2418 3683 6.528537 TTATTATTGTGAAGCATGCAAGGT 57.471 33.333 21.98 1.14 0.00 3.50
2473 3738 2.601314 CGACGCGGTCATCTTATTTTGA 59.399 45.455 12.47 0.00 32.09 2.69
2481 3746 7.855409 CGCGGTCATCTTATTTTGAATTTATCA 59.145 33.333 0.00 0.00 35.85 2.15
2758 4028 4.099633 AGGAGAGGAGACATGTGAATTGA 58.900 43.478 1.15 0.00 0.00 2.57
2774 4044 6.126507 TGTGAATTGAGGATATTTAGCCAGGA 60.127 38.462 0.00 0.00 33.22 3.86
2788 4058 2.997897 AGGACACCCTCAGTCGCC 60.998 66.667 0.00 0.00 38.86 5.54
2798 4068 0.451383 CTCAGTCGCCTGTCTCTCTG 59.549 60.000 0.00 0.00 39.82 3.35
2892 4624 4.325972 ACATTTCCATTTGATTGGTTGCC 58.674 39.130 0.00 0.00 38.01 4.52
2951 4683 0.872388 GCAACCCGTCGACAAAGAAT 59.128 50.000 17.16 0.00 0.00 2.40
3127 4859 5.695816 GCATTTCATCTGATAGAGGACAGAC 59.304 44.000 0.00 0.00 44.18 3.51
3279 5026 9.575868 TTGGTATTTATTCCAGACAACTGTAAA 57.424 29.630 0.00 0.00 42.05 2.01
3280 5027 9.575868 TGGTATTTATTCCAGACAACTGTAAAA 57.424 29.630 0.00 0.00 42.05 1.52
3287 5034 8.786826 ATTCCAGACAACTGTAAAATTATCGA 57.213 30.769 0.00 0.00 42.05 3.59
3288 5035 7.591006 TCCAGACAACTGTAAAATTATCGAC 57.409 36.000 0.00 0.00 42.05 4.20
3289 5036 7.383687 TCCAGACAACTGTAAAATTATCGACT 58.616 34.615 0.00 0.00 42.05 4.18
3290 5037 7.544566 TCCAGACAACTGTAAAATTATCGACTC 59.455 37.037 0.00 0.00 42.05 3.36
3291 5038 7.545965 CCAGACAACTGTAAAATTATCGACTCT 59.454 37.037 0.00 0.00 42.05 3.24
3292 5039 9.569167 CAGACAACTGTAAAATTATCGACTCTA 57.431 33.333 0.00 0.00 39.11 2.43
3298 5045 9.886132 ACTGTAAAATTATCGACTCTAATTGGT 57.114 29.630 3.83 0.00 31.03 3.67
3370 5117 2.093658 TGTTCTTGAATACTCCCTCCGC 60.094 50.000 0.00 0.00 0.00 5.54
3371 5118 2.160721 TCTTGAATACTCCCTCCGCT 57.839 50.000 0.00 0.00 0.00 5.52
3378 5125 4.654262 TGAATACTCCCTCCGCTCTAAAAT 59.346 41.667 0.00 0.00 0.00 1.82
3426 5184 9.998106 ACTTTGTACTTAATCTGTGACACTTAT 57.002 29.630 7.20 0.00 0.00 1.73
3434 5192 6.575162 AATCTGTGACACTTATTTTGGGAC 57.425 37.500 7.20 0.00 0.00 4.46
3442 5200 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
3443 5201 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
3444 5202 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3445 5203 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
3446 5204 0.178926 TTTGGGACGGAGGGAGTACA 60.179 55.000 0.00 0.00 0.00 2.90
3447 5205 0.613853 TTGGGACGGAGGGAGTACAG 60.614 60.000 0.00 0.00 0.00 2.74
3482 5240 6.273071 TCAAGTAGATATCCACATGAACGTG 58.727 40.000 6.73 0.00 36.61 4.49
3612 5370 4.774660 AATCAGTCTCTCCATGCTTCAT 57.225 40.909 0.00 0.00 0.00 2.57
3647 5405 5.196695 AGCAGAAAACTATCATTCTTCCCC 58.803 41.667 0.00 0.00 33.73 4.81
3648 5406 4.949856 GCAGAAAACTATCATTCTTCCCCA 59.050 41.667 0.00 0.00 33.73 4.96
3649 5407 5.163612 GCAGAAAACTATCATTCTTCCCCAC 60.164 44.000 0.00 0.00 33.73 4.61
3650 5408 6.183347 CAGAAAACTATCATTCTTCCCCACT 58.817 40.000 0.00 0.00 33.73 4.00
3651 5409 6.317391 CAGAAAACTATCATTCTTCCCCACTC 59.683 42.308 0.00 0.00 33.73 3.51
3652 5410 6.216456 AGAAAACTATCATTCTTCCCCACTCT 59.784 38.462 0.00 0.00 32.05 3.24
3653 5411 5.622346 AACTATCATTCTTCCCCACTCTC 57.378 43.478 0.00 0.00 0.00 3.20
3654 5412 4.889780 ACTATCATTCTTCCCCACTCTCT 58.110 43.478 0.00 0.00 0.00 3.10
3655 5413 4.653341 ACTATCATTCTTCCCCACTCTCTG 59.347 45.833 0.00 0.00 0.00 3.35
3656 5414 2.907892 TCATTCTTCCCCACTCTCTGT 58.092 47.619 0.00 0.00 0.00 3.41
3657 5415 2.568956 TCATTCTTCCCCACTCTCTGTG 59.431 50.000 0.00 0.00 45.80 3.66
3678 5436 7.178451 TCTGTGAAGTTGTGATACCTTGATCTA 59.822 37.037 0.00 0.00 0.00 1.98
3726 5484 1.202359 GGAAAGAAGCCGTGCACAAAA 60.202 47.619 18.64 0.00 0.00 2.44
3732 5490 0.537143 AGCCGTGCACAAAAGATGGA 60.537 50.000 18.64 0.00 0.00 3.41
3801 5559 9.941325 AATAAATTGACCAGCACAAATGATTAA 57.059 25.926 0.00 0.00 0.00 1.40
3810 5568 7.120579 ACCAGCACAAATGATTAATTACTTCGA 59.879 33.333 0.00 0.00 0.00 3.71
3811 5569 8.131100 CCAGCACAAATGATTAATTACTTCGAT 58.869 33.333 0.00 0.00 0.00 3.59
3826 5584 2.961526 TCGATAAGAAGGTGCTCCAC 57.038 50.000 7.70 0.83 35.89 4.02
3842 5600 7.948278 GTGCTCCACCTTATACAAGTATTAG 57.052 40.000 0.00 0.00 0.00 1.73
3843 5601 7.723324 GTGCTCCACCTTATACAAGTATTAGA 58.277 38.462 7.58 0.00 0.00 2.10
3845 5603 6.869388 GCTCCACCTTATACAAGTATTAGAGC 59.131 42.308 7.58 5.54 0.00 4.09
3846 5604 7.471539 GCTCCACCTTATACAAGTATTAGAGCA 60.472 40.741 7.58 0.00 0.00 4.26
3847 5605 7.723324 TCCACCTTATACAAGTATTAGAGCAC 58.277 38.462 7.58 0.00 0.00 4.40
3849 5607 7.985184 CCACCTTATACAAGTATTAGAGCACAA 59.015 37.037 7.58 0.00 0.00 3.33
3850 5608 9.035607 CACCTTATACAAGTATTAGAGCACAAG 57.964 37.037 7.58 0.00 0.00 3.16
3851 5609 8.978472 ACCTTATACAAGTATTAGAGCACAAGA 58.022 33.333 7.58 0.00 0.00 3.02
3852 5610 9.817809 CCTTATACAAGTATTAGAGCACAAGAA 57.182 33.333 7.58 0.00 0.00 2.52
3855 5613 8.934507 ATACAAGTATTAGAGCACAAGAACTC 57.065 34.615 0.00 0.00 0.00 3.01
3856 5614 6.759272 ACAAGTATTAGAGCACAAGAACTCA 58.241 36.000 0.00 0.00 35.28 3.41
3857 5615 7.217200 ACAAGTATTAGAGCACAAGAACTCAA 58.783 34.615 0.00 0.00 35.28 3.02
3858 5616 7.386299 ACAAGTATTAGAGCACAAGAACTCAAG 59.614 37.037 0.00 0.00 35.28 3.02
3859 5617 6.998802 AGTATTAGAGCACAAGAACTCAAGT 58.001 36.000 0.00 0.00 35.28 3.16
3865 5623 3.244670 CACAAGAACTCAAGTGCTTCG 57.755 47.619 0.08 0.76 41.87 3.79
3866 5624 2.866156 CACAAGAACTCAAGTGCTTCGA 59.134 45.455 0.08 0.00 41.87 3.71
3868 5626 4.686091 CACAAGAACTCAAGTGCTTCGATA 59.314 41.667 0.08 0.00 41.87 2.92
3870 5628 5.758296 ACAAGAACTCAAGTGCTTCGATAAA 59.242 36.000 0.08 0.00 41.87 1.40
3872 5630 7.041098 ACAAGAACTCAAGTGCTTCGATAAATT 60.041 33.333 0.08 0.00 41.87 1.82
3874 5632 6.650807 AGAACTCAAGTGCTTCGATAAATTGA 59.349 34.615 5.61 5.61 26.38 2.57
3875 5633 6.170675 ACTCAAGTGCTTCGATAAATTGAC 57.829 37.500 0.00 0.00 0.00 3.18
3876 5634 5.122396 ACTCAAGTGCTTCGATAAATTGACC 59.878 40.000 0.00 0.00 0.00 4.02
3877 5635 5.000591 TCAAGTGCTTCGATAAATTGACCA 58.999 37.500 0.00 0.00 0.00 4.02
3878 5636 5.122239 TCAAGTGCTTCGATAAATTGACCAG 59.878 40.000 0.00 0.00 0.00 4.00
3880 5638 3.126858 GTGCTTCGATAAATTGACCAGCA 59.873 43.478 3.45 3.45 33.72 4.41
3882 5640 3.126858 GCTTCGATAAATTGACCAGCACA 59.873 43.478 0.00 0.00 28.79 4.57
3883 5641 4.379394 GCTTCGATAAATTGACCAGCACAA 60.379 41.667 0.00 0.00 28.79 3.33
3884 5642 5.697473 TTCGATAAATTGACCAGCACAAA 57.303 34.783 0.00 0.00 0.00 2.83
3885 5643 5.895636 TCGATAAATTGACCAGCACAAAT 57.104 34.783 0.00 0.00 0.00 2.32
3886 5644 5.639757 TCGATAAATTGACCAGCACAAATG 58.360 37.500 0.00 0.00 0.00 2.32
3887 5645 5.414144 TCGATAAATTGACCAGCACAAATGA 59.586 36.000 0.00 0.00 0.00 2.57
3888 5646 6.095300 TCGATAAATTGACCAGCACAAATGAT 59.905 34.615 0.00 0.00 0.00 2.45
3889 5647 6.753279 CGATAAATTGACCAGCACAAATGATT 59.247 34.615 0.00 0.00 0.00 2.57
3890 5648 7.276218 CGATAAATTGACCAGCACAAATGATTT 59.724 33.333 0.00 0.00 0.00 2.17
3959 5717 1.157870 AAACCTGACGCGGTTCACAG 61.158 55.000 12.47 11.30 46.21 3.66
3978 5736 5.416639 TCACAGATGAGCATTTTAAGCATGT 59.583 36.000 0.00 0.00 0.00 3.21
3994 5752 6.492007 AAGCATGTGTCTCTACATTTCAAG 57.508 37.500 0.00 0.00 39.17 3.02
3998 5756 6.457934 GCATGTGTCTCTACATTTCAAGATGG 60.458 42.308 0.00 0.00 39.17 3.51
4001 5759 6.166279 GTGTCTCTACATTTCAAGATGGTGA 58.834 40.000 0.00 0.00 38.08 4.02
4012 5852 3.327464 TCAAGATGGTGATGTCAAGGTCA 59.673 43.478 0.00 0.00 0.00 4.02
4013 5853 4.019051 TCAAGATGGTGATGTCAAGGTCAT 60.019 41.667 0.00 0.00 0.00 3.06
4046 5886 8.615878 TCTTAAATTTGTCGGATTCAGAAGAA 57.384 30.769 0.00 0.00 38.31 2.52
4143 7862 6.089150 GCACTAACTAGTAGAACCAAAAGTCG 59.911 42.308 3.59 0.00 34.13 4.18
4169 7888 8.335532 AGAACGATCAAAAAGATTGGACAATA 57.664 30.769 0.00 0.00 41.68 1.90
4185 7904 8.731275 TTGGACAATACATGTATACTTCAAGG 57.269 34.615 18.56 4.52 44.12 3.61
4284 8003 5.604231 TGGATACACTCCTGCATAGAATTCT 59.396 40.000 13.56 13.56 46.17 2.40
4285 8004 6.782494 TGGATACACTCCTGCATAGAATTCTA 59.218 38.462 17.32 17.32 46.17 2.10
4286 8005 7.039434 TGGATACACTCCTGCATAGAATTCTAG 60.039 40.741 19.51 12.70 46.17 2.43
4338 8058 5.520376 AGATGTGAAACTTGGGTGAAAAG 57.480 39.130 0.00 0.00 38.04 2.27
4340 8060 4.712122 TGTGAAACTTGGGTGAAAAGAC 57.288 40.909 0.00 0.00 38.04 3.01
4344 8064 6.378564 TGTGAAACTTGGGTGAAAAGACATAA 59.621 34.615 0.00 0.00 38.04 1.90
4391 8111 2.941720 GCTATCTGCTGCTTTACTTGCT 59.058 45.455 0.00 0.00 38.95 3.91
4392 8112 3.376546 GCTATCTGCTGCTTTACTTGCTT 59.623 43.478 0.00 0.00 38.95 3.91
4393 8113 4.495514 GCTATCTGCTGCTTTACTTGCTTC 60.496 45.833 0.00 0.00 38.95 3.86
4394 8114 2.849942 TCTGCTGCTTTACTTGCTTCA 58.150 42.857 0.00 0.00 0.00 3.02
4395 8115 2.549754 TCTGCTGCTTTACTTGCTTCAC 59.450 45.455 0.00 0.00 0.00 3.18
4396 8116 2.551459 CTGCTGCTTTACTTGCTTCACT 59.449 45.455 0.00 0.00 0.00 3.41
4397 8117 3.738982 TGCTGCTTTACTTGCTTCACTA 58.261 40.909 0.00 0.00 0.00 2.74
4398 8118 3.498397 TGCTGCTTTACTTGCTTCACTAC 59.502 43.478 0.00 0.00 0.00 2.73
4399 8119 3.498397 GCTGCTTTACTTGCTTCACTACA 59.502 43.478 0.00 0.00 0.00 2.74
4423 8143 2.434336 AGTTGTGTTACTCACTGCTGGA 59.566 45.455 0.00 0.00 46.27 3.86
4424 8144 3.071602 AGTTGTGTTACTCACTGCTGGAT 59.928 43.478 0.00 0.00 46.27 3.41
4425 8145 3.319137 TGTGTTACTCACTGCTGGATC 57.681 47.619 0.00 0.00 46.27 3.36
4439 8159 5.187381 ACTGCTGGATCAGTCTGATATATGG 59.813 44.000 15.44 7.31 43.28 2.74
4443 8163 6.324512 GCTGGATCAGTCTGATATATGGAGAT 59.675 42.308 15.44 0.00 37.20 2.75
4458 8178 1.141858 GGAGATAGAAAGGCAGGGGTG 59.858 57.143 0.00 0.00 0.00 4.61
4462 8182 2.047769 TAGAAAGGCAGGGGTGGTAA 57.952 50.000 0.00 0.00 0.00 2.85
4463 8183 1.382914 AGAAAGGCAGGGGTGGTAAT 58.617 50.000 0.00 0.00 0.00 1.89
4464 8184 2.568979 AGAAAGGCAGGGGTGGTAATA 58.431 47.619 0.00 0.00 0.00 0.98
4465 8185 2.923629 AGAAAGGCAGGGGTGGTAATAA 59.076 45.455 0.00 0.00 0.00 1.40
4466 8186 3.531814 AGAAAGGCAGGGGTGGTAATAAT 59.468 43.478 0.00 0.00 0.00 1.28
4467 8187 4.016572 AGAAAGGCAGGGGTGGTAATAATT 60.017 41.667 0.00 0.00 0.00 1.40
4468 8188 3.312736 AGGCAGGGGTGGTAATAATTG 57.687 47.619 0.00 0.00 0.00 2.32
4469 8189 2.856231 AGGCAGGGGTGGTAATAATTGA 59.144 45.455 0.00 0.00 0.00 2.57
4470 8190 3.467103 AGGCAGGGGTGGTAATAATTGAT 59.533 43.478 0.00 0.00 0.00 2.57
4471 8191 3.573967 GGCAGGGGTGGTAATAATTGATG 59.426 47.826 0.00 0.00 0.00 3.07
4472 8192 3.005791 GCAGGGGTGGTAATAATTGATGC 59.994 47.826 0.00 0.00 0.00 3.91
4473 8193 3.253188 CAGGGGTGGTAATAATTGATGCG 59.747 47.826 0.00 0.00 0.00 4.73
4477 8197 5.299782 GGGGTGGTAATAATTGATGCGTTAA 59.700 40.000 0.00 0.00 0.00 2.01
4490 8210 5.057819 TGATGCGTTAAACAAGTAGGTGAA 58.942 37.500 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.255304 GTCAGTGATAGATCAAGATTTACTTCC 57.745 37.037 0.00 0.00 38.75 3.46
1 2 9.809096 TGTCAGTGATAGATCAAGATTTACTTC 57.191 33.333 0.00 0.00 38.75 3.01
2 3 9.814899 CTGTCAGTGATAGATCAAGATTTACTT 57.185 33.333 11.24 0.00 38.75 2.24
3 4 9.194972 TCTGTCAGTGATAGATCAAGATTTACT 57.805 33.333 14.98 0.00 38.75 2.24
4 5 9.809096 TTCTGTCAGTGATAGATCAAGATTTAC 57.191 33.333 18.98 0.00 38.75 2.01
6 7 9.730705 TTTTCTGTCAGTGATAGATCAAGATTT 57.269 29.630 18.98 0.00 38.75 2.17
7 8 9.902684 ATTTTCTGTCAGTGATAGATCAAGATT 57.097 29.630 18.98 0.76 38.75 2.40
8 9 9.327628 CATTTTCTGTCAGTGATAGATCAAGAT 57.672 33.333 18.98 4.28 38.75 2.40
9 10 8.316946 ACATTTTCTGTCAGTGATAGATCAAGA 58.683 33.333 18.98 2.59 33.58 3.02
10 11 8.489990 ACATTTTCTGTCAGTGATAGATCAAG 57.510 34.615 18.98 12.46 33.58 3.02
26 27 8.702438 GTGGTGATAAAAATGTGACATTTTCTG 58.298 33.333 29.73 0.00 31.53 3.02
31 32 6.295236 CCAGGTGGTGATAAAAATGTGACATT 60.295 38.462 4.72 4.72 0.00 2.71
51 52 1.666011 CTCACTACGTGTGCCAGGT 59.334 57.895 0.00 5.95 45.81 4.00
118 119 8.311109 TCATTGCTGTGATTTAGTAGTACAAGA 58.689 33.333 2.52 0.00 0.00 3.02
211 212 2.540361 GGCAACAATGTCTCGATGCATC 60.540 50.000 17.10 17.10 35.57 3.91
241 242 1.134946 GCTTGCCTGCACCGATTTTAT 59.865 47.619 0.00 0.00 0.00 1.40
242 243 0.525761 GCTTGCCTGCACCGATTTTA 59.474 50.000 0.00 0.00 0.00 1.52
243 244 1.181098 AGCTTGCCTGCACCGATTTT 61.181 50.000 0.00 0.00 34.99 1.82
244 245 0.322456 TAGCTTGCCTGCACCGATTT 60.322 50.000 0.00 0.00 34.99 2.17
245 246 0.107017 ATAGCTTGCCTGCACCGATT 60.107 50.000 0.00 0.00 34.99 3.34
246 247 0.816825 CATAGCTTGCCTGCACCGAT 60.817 55.000 0.00 0.00 34.99 4.18
247 248 1.450134 CATAGCTTGCCTGCACCGA 60.450 57.895 0.00 0.00 34.99 4.69
248 249 3.104766 CATAGCTTGCCTGCACCG 58.895 61.111 0.00 0.00 34.99 4.94
249 250 2.803479 GCATAGCTTGCCTGCACC 59.197 61.111 11.29 0.00 46.15 5.01
257 258 1.674962 GCAAGGAAGGAGCATAGCTTG 59.325 52.381 0.00 0.00 39.88 4.01
266 267 1.815003 GTGGACAATGCAAGGAAGGAG 59.185 52.381 0.00 0.00 0.00 3.69
268 269 0.890683 GGTGGACAATGCAAGGAAGG 59.109 55.000 0.00 0.00 0.00 3.46
280 281 3.384168 ACTGCCAAGATATAGGTGGACA 58.616 45.455 3.52 1.37 0.00 4.02
290 291 6.351881 CCAGTTTTACTAGGACTGCCAAGATA 60.352 42.308 10.51 0.00 39.48 1.98
291 292 5.491982 CAGTTTTACTAGGACTGCCAAGAT 58.508 41.667 0.00 0.00 34.97 2.40
305 306 1.405121 GGTCGCCGATCCAGTTTTACT 60.405 52.381 0.00 0.00 0.00 2.24
327 328 1.267121 TCTTTTCTAGACTGGGCGCT 58.733 50.000 7.64 0.00 0.00 5.92
488 496 1.330521 CGTATGAGTCGCCCCATTTTG 59.669 52.381 0.00 0.00 0.00 2.44
500 508 2.716244 CTCCTCGCGCGTATGAGT 59.284 61.111 30.98 0.00 0.00 3.41
502 510 3.592814 CCCTCCTCGCGCGTATGA 61.593 66.667 30.98 21.77 0.00 2.15
515 523 2.531942 AACCCCTCACCACCCCTC 60.532 66.667 0.00 0.00 0.00 4.30
516 524 2.531942 GAACCCCTCACCACCCCT 60.532 66.667 0.00 0.00 0.00 4.79
517 525 4.029809 CGAACCCCTCACCACCCC 62.030 72.222 0.00 0.00 0.00 4.95
521 529 2.372504 TGAAATTACGAACCCCTCACCA 59.627 45.455 0.00 0.00 0.00 4.17
522 530 3.007635 CTGAAATTACGAACCCCTCACC 58.992 50.000 0.00 0.00 0.00 4.02
523 531 3.934068 TCTGAAATTACGAACCCCTCAC 58.066 45.455 0.00 0.00 0.00 3.51
524 532 4.285003 TCTTCTGAAATTACGAACCCCTCA 59.715 41.667 0.00 0.00 0.00 3.86
525 533 4.828829 TCTTCTGAAATTACGAACCCCTC 58.171 43.478 0.00 0.00 0.00 4.30
526 534 4.903045 TCTTCTGAAATTACGAACCCCT 57.097 40.909 0.00 0.00 0.00 4.79
527 535 5.646360 TGATTCTTCTGAAATTACGAACCCC 59.354 40.000 0.00 0.00 35.63 4.95
528 536 6.737254 TGATTCTTCTGAAATTACGAACCC 57.263 37.500 0.00 0.00 35.63 4.11
529 537 9.704098 GTAATGATTCTTCTGAAATTACGAACC 57.296 33.333 0.00 0.00 35.63 3.62
530 538 9.704098 GGTAATGATTCTTCTGAAATTACGAAC 57.296 33.333 12.32 1.36 37.07 3.95
531 539 8.600625 CGGTAATGATTCTTCTGAAATTACGAA 58.399 33.333 12.32 4.46 37.07 3.85
532 540 7.254319 GCGGTAATGATTCTTCTGAAATTACGA 60.254 37.037 12.32 0.00 37.07 3.43
533 541 6.846283 GCGGTAATGATTCTTCTGAAATTACG 59.154 38.462 12.32 10.03 37.07 3.18
534 542 7.693952 TGCGGTAATGATTCTTCTGAAATTAC 58.306 34.615 11.04 11.04 36.32 1.89
535 543 7.857734 TGCGGTAATGATTCTTCTGAAATTA 57.142 32.000 0.00 0.00 35.63 1.40
536 544 6.757897 TGCGGTAATGATTCTTCTGAAATT 57.242 33.333 0.00 0.00 35.63 1.82
537 545 6.599244 TCTTGCGGTAATGATTCTTCTGAAAT 59.401 34.615 0.00 0.00 35.63 2.17
538 546 5.937540 TCTTGCGGTAATGATTCTTCTGAAA 59.062 36.000 0.00 0.00 35.63 2.69
539 547 5.351465 GTCTTGCGGTAATGATTCTTCTGAA 59.649 40.000 0.00 0.00 36.54 3.02
540 548 4.870426 GTCTTGCGGTAATGATTCTTCTGA 59.130 41.667 0.00 0.00 0.00 3.27
541 549 4.631377 TGTCTTGCGGTAATGATTCTTCTG 59.369 41.667 0.00 0.00 0.00 3.02
542 550 4.832248 TGTCTTGCGGTAATGATTCTTCT 58.168 39.130 0.00 0.00 0.00 2.85
543 551 5.741388 ATGTCTTGCGGTAATGATTCTTC 57.259 39.130 0.00 0.00 0.00 2.87
544 552 6.112734 TGTATGTCTTGCGGTAATGATTCTT 58.887 36.000 0.00 0.00 0.00 2.52
545 553 5.670485 TGTATGTCTTGCGGTAATGATTCT 58.330 37.500 0.00 0.00 0.00 2.40
546 554 5.753438 TCTGTATGTCTTGCGGTAATGATTC 59.247 40.000 0.00 0.00 0.00 2.52
547 555 5.670485 TCTGTATGTCTTGCGGTAATGATT 58.330 37.500 0.00 0.00 0.00 2.57
548 556 5.276461 TCTGTATGTCTTGCGGTAATGAT 57.724 39.130 0.00 0.00 0.00 2.45
549 557 4.441495 CCTCTGTATGTCTTGCGGTAATGA 60.441 45.833 0.00 0.00 0.00 2.57
550 558 3.804325 CCTCTGTATGTCTTGCGGTAATG 59.196 47.826 0.00 0.00 0.00 1.90
551 559 3.181465 CCCTCTGTATGTCTTGCGGTAAT 60.181 47.826 0.00 0.00 0.00 1.89
552 560 2.167693 CCCTCTGTATGTCTTGCGGTAA 59.832 50.000 0.00 0.00 0.00 2.85
553 561 1.754803 CCCTCTGTATGTCTTGCGGTA 59.245 52.381 0.00 0.00 0.00 4.02
554 562 0.537188 CCCTCTGTATGTCTTGCGGT 59.463 55.000 0.00 0.00 0.00 5.68
555 563 0.537188 ACCCTCTGTATGTCTTGCGG 59.463 55.000 0.00 0.00 0.00 5.69
556 564 1.066858 ACACCCTCTGTATGTCTTGCG 60.067 52.381 0.00 0.00 0.00 4.85
557 565 2.770164 ACACCCTCTGTATGTCTTGC 57.230 50.000 0.00 0.00 0.00 4.01
564 572 1.414158 AGCGCATACACCCTCTGTAT 58.586 50.000 11.47 0.00 45.56 2.29
565 573 1.954382 CTAGCGCATACACCCTCTGTA 59.046 52.381 11.47 0.00 39.78 2.74
566 574 0.747255 CTAGCGCATACACCCTCTGT 59.253 55.000 11.47 0.00 36.82 3.41
567 575 0.032678 CCTAGCGCATACACCCTCTG 59.967 60.000 11.47 0.00 0.00 3.35
568 576 0.397254 ACCTAGCGCATACACCCTCT 60.397 55.000 11.47 0.00 0.00 3.69
569 577 0.032267 GACCTAGCGCATACACCCTC 59.968 60.000 11.47 0.00 0.00 4.30
570 578 1.735376 CGACCTAGCGCATACACCCT 61.735 60.000 11.47 0.00 0.00 4.34
571 579 1.299926 CGACCTAGCGCATACACCC 60.300 63.158 11.47 0.00 0.00 4.61
572 580 4.320971 CGACCTAGCGCATACACC 57.679 61.111 11.47 0.00 0.00 4.16
580 588 1.202043 CCGATGTATAGCGACCTAGCG 60.202 57.143 0.00 0.00 43.00 4.26
581 589 1.467713 GCCGATGTATAGCGACCTAGC 60.468 57.143 0.00 0.00 38.09 3.42
582 590 1.132643 GGCCGATGTATAGCGACCTAG 59.867 57.143 0.00 0.00 35.25 3.02
583 591 1.171308 GGCCGATGTATAGCGACCTA 58.829 55.000 0.00 0.00 35.25 3.08
584 592 0.539901 AGGCCGATGTATAGCGACCT 60.540 55.000 0.00 0.00 43.88 3.85
585 593 1.135460 GTAGGCCGATGTATAGCGACC 60.135 57.143 0.00 0.00 38.60 4.79
586 594 1.538512 TGTAGGCCGATGTATAGCGAC 59.461 52.381 0.00 0.00 38.09 5.19
587 595 1.538512 GTGTAGGCCGATGTATAGCGA 59.461 52.381 0.00 0.00 38.09 4.93
588 596 1.728179 CGTGTAGGCCGATGTATAGCG 60.728 57.143 0.00 0.00 35.03 4.26
589 597 1.978542 CGTGTAGGCCGATGTATAGC 58.021 55.000 0.00 0.00 0.00 2.97
590 598 1.402456 GGCGTGTAGGCCGATGTATAG 60.402 57.143 0.00 0.00 44.40 1.31
591 599 0.599558 GGCGTGTAGGCCGATGTATA 59.400 55.000 0.00 0.00 44.40 1.47
592 600 1.366366 GGCGTGTAGGCCGATGTAT 59.634 57.895 0.00 0.00 44.40 2.29
593 601 2.809706 GGCGTGTAGGCCGATGTA 59.190 61.111 0.00 0.00 44.40 2.29
600 608 1.583054 CTCCTATTTGGCGTGTAGGC 58.417 55.000 4.54 0.00 46.95 3.93
601 609 1.583054 GCTCCTATTTGGCGTGTAGG 58.417 55.000 3.32 3.32 37.03 3.18
602 610 1.134521 TGGCTCCTATTTGGCGTGTAG 60.135 52.381 0.00 0.00 35.26 2.74
603 611 0.906066 TGGCTCCTATTTGGCGTGTA 59.094 50.000 0.00 0.00 35.26 2.90
604 612 0.676782 GTGGCTCCTATTTGGCGTGT 60.677 55.000 0.00 0.00 35.26 4.49
605 613 1.705337 CGTGGCTCCTATTTGGCGTG 61.705 60.000 0.00 0.00 35.26 5.34
606 614 1.449601 CGTGGCTCCTATTTGGCGT 60.450 57.895 0.00 0.00 35.26 5.68
607 615 2.823829 GCGTGGCTCCTATTTGGCG 61.824 63.158 0.00 0.00 35.26 5.69
608 616 0.179056 TAGCGTGGCTCCTATTTGGC 60.179 55.000 0.00 0.00 40.44 4.52
609 617 2.549754 CAATAGCGTGGCTCCTATTTGG 59.450 50.000 0.00 0.00 40.44 3.28
610 618 2.549754 CCAATAGCGTGGCTCCTATTTG 59.450 50.000 0.00 3.00 40.44 2.32
611 619 2.438021 TCCAATAGCGTGGCTCCTATTT 59.562 45.455 0.00 0.00 40.44 1.40
612 620 2.047061 TCCAATAGCGTGGCTCCTATT 58.953 47.619 0.00 5.18 40.44 1.73
613 621 1.344763 GTCCAATAGCGTGGCTCCTAT 59.655 52.381 0.00 0.00 40.44 2.57
614 622 0.750850 GTCCAATAGCGTGGCTCCTA 59.249 55.000 0.00 0.00 40.44 2.94
615 623 1.522569 GTCCAATAGCGTGGCTCCT 59.477 57.895 0.00 0.00 40.44 3.69
616 624 1.883084 CGTCCAATAGCGTGGCTCC 60.883 63.158 0.00 0.00 40.44 4.70
617 625 0.739813 AACGTCCAATAGCGTGGCTC 60.740 55.000 0.00 0.00 41.42 4.70
618 626 1.019278 CAACGTCCAATAGCGTGGCT 61.019 55.000 0.00 0.00 41.42 4.75
619 627 1.423845 CAACGTCCAATAGCGTGGC 59.576 57.895 0.00 0.00 41.42 5.01
620 628 1.019278 AGCAACGTCCAATAGCGTGG 61.019 55.000 0.00 0.00 41.42 4.94
621 629 1.635844 TAGCAACGTCCAATAGCGTG 58.364 50.000 0.00 0.00 41.42 5.34
622 630 2.373540 TTAGCAACGTCCAATAGCGT 57.626 45.000 0.00 0.00 43.64 5.07
623 631 3.944422 AATTAGCAACGTCCAATAGCG 57.056 42.857 0.00 0.00 0.00 4.26
624 632 6.114221 TGTAAATTAGCAACGTCCAATAGC 57.886 37.500 0.00 0.00 0.00 2.97
625 633 7.352739 GGATGTAAATTAGCAACGTCCAATAG 58.647 38.462 7.84 0.00 45.02 1.73
626 634 6.018588 CGGATGTAAATTAGCAACGTCCAATA 60.019 38.462 12.14 0.00 45.66 1.90
627 635 5.220777 CGGATGTAAATTAGCAACGTCCAAT 60.221 40.000 12.14 0.00 45.66 3.16
628 636 4.093703 CGGATGTAAATTAGCAACGTCCAA 59.906 41.667 12.14 0.00 45.66 3.53
629 637 3.619483 CGGATGTAAATTAGCAACGTCCA 59.381 43.478 12.14 0.00 45.66 4.02
630 638 3.001939 CCGGATGTAAATTAGCAACGTCC 59.998 47.826 0.00 3.37 43.13 4.79
631 639 3.001939 CCCGGATGTAAATTAGCAACGTC 59.998 47.826 0.73 0.00 0.00 4.34
632 640 2.940410 CCCGGATGTAAATTAGCAACGT 59.060 45.455 0.73 0.00 0.00 3.99
633 641 2.286772 GCCCGGATGTAAATTAGCAACG 60.287 50.000 0.73 0.00 0.00 4.10
634 642 2.949644 AGCCCGGATGTAAATTAGCAAC 59.050 45.455 0.73 0.00 0.00 4.17
635 643 3.290948 AGCCCGGATGTAAATTAGCAA 57.709 42.857 0.73 0.00 0.00 3.91
636 644 3.290948 AAGCCCGGATGTAAATTAGCA 57.709 42.857 0.73 0.00 0.00 3.49
637 645 3.751698 CCTAAGCCCGGATGTAAATTAGC 59.248 47.826 0.73 0.00 0.00 3.09
638 646 4.324267 CCCTAAGCCCGGATGTAAATTAG 58.676 47.826 0.73 0.44 0.00 1.73
639 647 3.073356 CCCCTAAGCCCGGATGTAAATTA 59.927 47.826 0.73 0.00 0.00 1.40
640 648 2.158519 CCCCTAAGCCCGGATGTAAATT 60.159 50.000 0.73 0.00 0.00 1.82
641 649 1.423921 CCCCTAAGCCCGGATGTAAAT 59.576 52.381 0.73 0.00 0.00 1.40
642 650 0.841289 CCCCTAAGCCCGGATGTAAA 59.159 55.000 0.73 0.00 0.00 2.01
643 651 0.030909 TCCCCTAAGCCCGGATGTAA 60.031 55.000 0.73 0.00 0.00 2.41
644 652 0.192566 ATCCCCTAAGCCCGGATGTA 59.807 55.000 0.73 0.00 35.03 2.29
645 653 1.073706 ATCCCCTAAGCCCGGATGT 60.074 57.895 0.73 0.00 35.03 3.06
646 654 1.376466 CATCCCCTAAGCCCGGATG 59.624 63.158 0.73 1.17 45.21 3.51
647 655 1.847968 CCATCCCCTAAGCCCGGAT 60.848 63.158 0.73 0.00 36.83 4.18
648 656 2.340909 ATCCATCCCCTAAGCCCGGA 62.341 60.000 0.73 0.00 0.00 5.14
649 657 0.546747 TATCCATCCCCTAAGCCCGG 60.547 60.000 0.00 0.00 0.00 5.73
650 658 0.905357 CTATCCATCCCCTAAGCCCG 59.095 60.000 0.00 0.00 0.00 6.13
651 659 2.046280 ACTATCCATCCCCTAAGCCC 57.954 55.000 0.00 0.00 0.00 5.19
652 660 5.578157 TTTTACTATCCATCCCCTAAGCC 57.422 43.478 0.00 0.00 0.00 4.35
653 661 6.779860 TGATTTTACTATCCATCCCCTAAGC 58.220 40.000 0.00 0.00 0.00 3.09
654 662 8.605947 TCATGATTTTACTATCCATCCCCTAAG 58.394 37.037 0.00 0.00 0.00 2.18
655 663 8.518720 TCATGATTTTACTATCCATCCCCTAA 57.481 34.615 0.00 0.00 0.00 2.69
656 664 8.518720 TTCATGATTTTACTATCCATCCCCTA 57.481 34.615 0.00 0.00 0.00 3.53
657 665 7.406620 TTCATGATTTTACTATCCATCCCCT 57.593 36.000 0.00 0.00 0.00 4.79
658 666 8.477419 TTTTCATGATTTTACTATCCATCCCC 57.523 34.615 0.00 0.00 0.00 4.81
699 707 1.000233 CACGCACAACAGCATCTTGC 61.000 55.000 0.00 0.00 45.46 4.01
700 708 0.587768 TCACGCACAACAGCATCTTG 59.412 50.000 0.00 0.00 0.00 3.02
701 709 1.198408 CATCACGCACAACAGCATCTT 59.802 47.619 0.00 0.00 0.00 2.40
702 710 0.800631 CATCACGCACAACAGCATCT 59.199 50.000 0.00 0.00 0.00 2.90
703 711 0.518636 ACATCACGCACAACAGCATC 59.481 50.000 0.00 0.00 0.00 3.91
704 712 0.518636 GACATCACGCACAACAGCAT 59.481 50.000 0.00 0.00 0.00 3.79
705 713 1.506309 GGACATCACGCACAACAGCA 61.506 55.000 0.00 0.00 0.00 4.41
706 714 1.207593 GGACATCACGCACAACAGC 59.792 57.895 0.00 0.00 0.00 4.40
707 715 1.221466 ACGGACATCACGCACAACAG 61.221 55.000 0.00 0.00 34.00 3.16
708 716 1.227409 ACGGACATCACGCACAACA 60.227 52.632 0.00 0.00 34.00 3.33
709 717 1.204062 CACGGACATCACGCACAAC 59.796 57.895 0.00 0.00 34.00 3.32
710 718 2.603247 GCACGGACATCACGCACAA 61.603 57.895 0.00 0.00 34.00 3.33
711 719 3.041351 GCACGGACATCACGCACA 61.041 61.111 0.00 0.00 34.00 4.57
712 720 2.111932 TTTGCACGGACATCACGCAC 62.112 55.000 0.00 0.00 31.10 5.34
713 721 1.440145 TTTTGCACGGACATCACGCA 61.440 50.000 0.00 0.00 34.00 5.24
714 722 0.109781 ATTTTGCACGGACATCACGC 60.110 50.000 0.00 0.00 34.00 5.34
715 723 2.330231 AATTTTGCACGGACATCACG 57.670 45.000 0.00 0.00 37.36 4.35
716 724 3.637432 TCAAATTTTGCACGGACATCAC 58.363 40.909 4.19 0.00 0.00 3.06
717 725 3.998099 TCAAATTTTGCACGGACATCA 57.002 38.095 4.19 0.00 0.00 3.07
718 726 4.484236 TCATCAAATTTTGCACGGACATC 58.516 39.130 4.19 0.00 0.00 3.06
719 727 4.517952 TCATCAAATTTTGCACGGACAT 57.482 36.364 4.19 0.00 0.00 3.06
720 728 3.998099 TCATCAAATTTTGCACGGACA 57.002 38.095 4.19 0.00 0.00 4.02
721 729 4.744631 AGTTTCATCAAATTTTGCACGGAC 59.255 37.500 4.19 1.58 0.00 4.79
722 730 4.942852 AGTTTCATCAAATTTTGCACGGA 58.057 34.783 4.19 0.00 0.00 4.69
723 731 5.233902 TCAAGTTTCATCAAATTTTGCACGG 59.766 36.000 4.19 0.00 0.00 4.94
724 732 6.271396 TCAAGTTTCATCAAATTTTGCACG 57.729 33.333 4.19 0.00 0.00 5.34
725 733 7.462731 TGTTCAAGTTTCATCAAATTTTGCAC 58.537 30.769 4.19 0.00 0.00 4.57
726 734 7.606858 TGTTCAAGTTTCATCAAATTTTGCA 57.393 28.000 4.19 0.00 0.00 4.08
727 735 8.553696 AGATGTTCAAGTTTCATCAAATTTTGC 58.446 29.630 4.19 0.00 39.96 3.68
728 736 9.858247 CAGATGTTCAAGTTTCATCAAATTTTG 57.142 29.630 2.59 2.59 39.96 2.44
729 737 9.820725 TCAGATGTTCAAGTTTCATCAAATTTT 57.179 25.926 12.13 0.00 39.96 1.82
730 738 9.472361 CTCAGATGTTCAAGTTTCATCAAATTT 57.528 29.630 12.13 0.00 39.96 1.82
731 739 8.853126 TCTCAGATGTTCAAGTTTCATCAAATT 58.147 29.630 12.13 0.00 39.96 1.82
732 740 8.400184 TCTCAGATGTTCAAGTTTCATCAAAT 57.600 30.769 12.13 0.00 39.96 2.32
733 741 7.806409 TCTCAGATGTTCAAGTTTCATCAAA 57.194 32.000 12.13 3.05 39.96 2.69
734 742 7.521099 GCTTCTCAGATGTTCAAGTTTCATCAA 60.521 37.037 12.13 3.29 39.96 2.57
735 743 6.072838 GCTTCTCAGATGTTCAAGTTTCATCA 60.073 38.462 12.13 0.00 39.96 3.07
736 744 6.149142 AGCTTCTCAGATGTTCAAGTTTCATC 59.851 38.462 0.00 0.00 38.43 2.92
737 745 6.002704 AGCTTCTCAGATGTTCAAGTTTCAT 58.997 36.000 0.00 0.00 0.00 2.57
738 746 5.371526 AGCTTCTCAGATGTTCAAGTTTCA 58.628 37.500 0.00 0.00 0.00 2.69
739 747 5.468072 TGAGCTTCTCAGATGTTCAAGTTTC 59.532 40.000 4.80 0.00 35.39 2.78
740 748 5.371526 TGAGCTTCTCAGATGTTCAAGTTT 58.628 37.500 4.80 0.00 35.39 2.66
741 749 4.965814 TGAGCTTCTCAGATGTTCAAGTT 58.034 39.130 4.80 0.00 35.39 2.66
742 750 4.613925 TGAGCTTCTCAGATGTTCAAGT 57.386 40.909 4.80 0.00 35.39 3.16
743 751 4.333095 CCATGAGCTTCTCAGATGTTCAAG 59.667 45.833 10.56 6.87 44.08 3.02
744 752 4.259356 CCATGAGCTTCTCAGATGTTCAA 58.741 43.478 10.56 0.00 44.08 2.69
745 753 3.870274 CCATGAGCTTCTCAGATGTTCA 58.130 45.455 9.18 9.18 44.08 3.18
746 754 2.613133 GCCATGAGCTTCTCAGATGTTC 59.387 50.000 0.00 0.00 44.08 3.18
747 755 2.026542 TGCCATGAGCTTCTCAGATGTT 60.027 45.455 0.00 0.00 44.08 2.71
748 756 1.558294 TGCCATGAGCTTCTCAGATGT 59.442 47.619 0.00 0.00 44.08 3.06
749 757 2.327200 TGCCATGAGCTTCTCAGATG 57.673 50.000 0.00 0.00 44.08 2.90
750 758 3.361281 TTTGCCATGAGCTTCTCAGAT 57.639 42.857 0.00 0.00 44.08 2.90
751 759 2.865119 TTTGCCATGAGCTTCTCAGA 57.135 45.000 0.00 0.00 44.08 3.27
752 760 3.928727 TTTTTGCCATGAGCTTCTCAG 57.071 42.857 0.00 0.00 44.08 3.35
814 822 9.672086 CATTCGATGAACAGTAAAACCTAAAAA 57.328 29.630 0.00 0.00 0.00 1.94
815 823 7.806014 GCATTCGATGAACAGTAAAACCTAAAA 59.194 33.333 0.00 0.00 0.00 1.52
816 824 7.041030 TGCATTCGATGAACAGTAAAACCTAAA 60.041 33.333 0.00 0.00 0.00 1.85
817 825 6.428465 TGCATTCGATGAACAGTAAAACCTAA 59.572 34.615 0.00 0.00 0.00 2.69
818 826 5.935206 TGCATTCGATGAACAGTAAAACCTA 59.065 36.000 0.00 0.00 0.00 3.08
819 827 4.759693 TGCATTCGATGAACAGTAAAACCT 59.240 37.500 0.00 0.00 0.00 3.50
820 828 4.851558 GTGCATTCGATGAACAGTAAAACC 59.148 41.667 0.00 0.00 38.75 3.27
821 829 5.448438 TGTGCATTCGATGAACAGTAAAAC 58.552 37.500 4.99 0.00 43.79 2.43
822 830 5.681337 TGTGCATTCGATGAACAGTAAAA 57.319 34.783 4.99 0.00 43.79 1.52
829 837 2.540361 GCCTCATGTGCATTCGATGAAC 60.540 50.000 0.00 0.00 39.38 3.18
830 838 1.672363 GCCTCATGTGCATTCGATGAA 59.328 47.619 0.00 0.00 0.00 2.57
831 839 1.302366 GCCTCATGTGCATTCGATGA 58.698 50.000 0.00 0.00 0.00 2.92
832 840 0.309922 GGCCTCATGTGCATTCGATG 59.690 55.000 0.00 0.00 0.00 3.84
833 841 1.162181 CGGCCTCATGTGCATTCGAT 61.162 55.000 0.00 0.00 0.00 3.59
834 842 1.815003 CGGCCTCATGTGCATTCGA 60.815 57.895 0.00 0.00 0.00 3.71
835 843 2.711311 CGGCCTCATGTGCATTCG 59.289 61.111 0.00 3.48 0.00 3.34
836 844 2.484062 CCCGGCCTCATGTGCATTC 61.484 63.158 0.00 0.00 0.00 2.67
837 845 2.440796 CCCGGCCTCATGTGCATT 60.441 61.111 0.00 0.00 0.00 3.56
854 862 3.138930 TATCGCTCTCGCTGGGTGC 62.139 63.158 0.00 0.00 38.57 5.01
855 863 1.007964 CTATCGCTCTCGCTGGGTG 60.008 63.158 0.00 0.00 35.26 4.61
909 917 0.959553 GTGACCTCGTTCACTCCAGA 59.040 55.000 7.15 0.00 42.36 3.86
957 967 2.341846 ATCCGACGGCAACCATTATT 57.658 45.000 9.66 0.00 0.00 1.40
959 969 2.228138 GTATCCGACGGCAACCATTA 57.772 50.000 9.66 0.00 0.00 1.90
1198 2446 3.151022 GGAGGGACAGAGGAGGCG 61.151 72.222 0.00 0.00 0.00 5.52
1272 2520 0.670546 ATTCCTCACGGCAGTCAACG 60.671 55.000 0.00 0.00 0.00 4.10
1359 2615 2.269241 GCGGTCCCTTTCCTCCTG 59.731 66.667 0.00 0.00 0.00 3.86
1374 2630 0.526524 GTGAACATCTCCTCTCCGCG 60.527 60.000 0.00 0.00 0.00 6.46
1433 2689 0.257039 GGTACTGGTCTCTCGGGGTA 59.743 60.000 0.00 0.00 0.00 3.69
1542 2798 5.968988 ATCCTGAGGAAATTCGTGATTACGG 60.969 44.000 4.76 0.00 42.27 4.02
1609 2865 3.070018 AGAAGAACGAATCAGCCAACAG 58.930 45.455 0.00 0.00 0.00 3.16
1647 2903 7.973944 AGTACAAAAACACAGAAATTTGACTCC 59.026 33.333 0.00 0.00 36.52 3.85
1662 2918 8.836268 ATACACCGAATTCTAGTACAAAAACA 57.164 30.769 3.52 0.00 0.00 2.83
1669 2925 7.838771 AAACCAATACACCGAATTCTAGTAC 57.161 36.000 3.52 0.00 0.00 2.73
1694 2950 2.575532 CTTCTGTTTTCAGCTCCACCA 58.424 47.619 0.00 0.00 46.59 4.17
1701 2957 3.313526 TGAACTCAGCTTCTGTTTTCAGC 59.686 43.478 0.00 0.00 46.59 4.26
1727 2983 7.011482 GCTGACAACGATTTCTACCATAATTCT 59.989 37.037 0.00 0.00 0.00 2.40
1735 2991 3.585862 TCTGCTGACAACGATTTCTACC 58.414 45.455 0.00 0.00 0.00 3.18
1798 3054 5.308237 TGTTTGTTTTGGCCCCTATACAATT 59.692 36.000 0.00 0.00 0.00 2.32
1806 3062 1.578897 AGTTGTTTGTTTTGGCCCCT 58.421 45.000 0.00 0.00 0.00 4.79
1854 3110 1.340889 TGTGCATCTTTTCCTTGGTGC 59.659 47.619 0.00 0.00 0.00 5.01
1878 3134 5.746284 ACCCCTTTTGTCTAGCTTAGAATC 58.254 41.667 0.00 0.00 36.40 2.52
1890 3146 3.955551 TCAACCTTACAACCCCTTTTGTC 59.044 43.478 0.00 0.00 40.29 3.18
1935 3191 1.330829 TGCTGTGCTATCTAGTCGACG 59.669 52.381 10.46 0.00 0.00 5.12
1993 3249 1.219646 GGCGTTTCACCGACAAAGTA 58.780 50.000 0.00 0.00 35.41 2.24
2010 3267 3.923017 AAATAACACTGAAGCTGTGGC 57.077 42.857 7.50 0.00 37.57 5.01
2107 3370 5.969423 AGGGTCATATGCAAAATTTGACAG 58.031 37.500 10.26 0.00 38.71 3.51
2118 3381 6.215431 AGGCATAGTTATAAGGGTCATATGCA 59.785 38.462 14.16 0.00 43.55 3.96
2139 3402 1.304052 AACCTGGCGCATAAAGGCA 60.304 52.632 10.83 0.00 42.00 4.75
2205 3468 3.995048 GGAAAGTACCAGAACAGTGCTAC 59.005 47.826 0.00 0.00 29.39 3.58
2206 3469 3.901844 AGGAAAGTACCAGAACAGTGCTA 59.098 43.478 0.00 0.00 29.39 3.49
2473 3738 6.474140 TTTGCTGGATCTGCATGATAAATT 57.526 33.333 13.03 0.00 38.06 1.82
2642 3907 6.647334 TTTACATGCAAGGAAACAATCAGA 57.353 33.333 0.00 0.00 0.00 3.27
2758 4028 2.711547 GGGTGTCCTGGCTAAATATCCT 59.288 50.000 0.00 0.00 0.00 3.24
2788 4058 7.499292 AGATAATGGATGAAACAGAGAGACAG 58.501 38.462 0.00 0.00 0.00 3.51
2798 4068 9.403110 GTATGCAATGAAGATAATGGATGAAAC 57.597 33.333 0.00 0.00 0.00 2.78
2892 4624 1.442769 AGTGCGTAATTCACCTGCAG 58.557 50.000 6.78 6.78 36.03 4.41
2951 4683 6.479972 AGTACATCCGGTTTCAATATCTCA 57.520 37.500 0.00 0.00 0.00 3.27
3187 4919 9.004717 TCGTAAAAATTCCAGATTTATGTCACA 57.995 29.630 0.00 0.00 30.95 3.58
3279 5026 7.125792 ACTCCACCAATTAGAGTCGATAATT 57.874 36.000 0.00 0.00 36.06 1.40
3280 5027 6.732896 ACTCCACCAATTAGAGTCGATAAT 57.267 37.500 0.00 0.00 36.06 1.28
3281 5028 6.338146 CAACTCCACCAATTAGAGTCGATAA 58.662 40.000 0.00 0.00 39.92 1.75
3282 5029 5.163447 CCAACTCCACCAATTAGAGTCGATA 60.163 44.000 0.00 0.00 39.92 2.92
3283 5030 4.383118 CCAACTCCACCAATTAGAGTCGAT 60.383 45.833 0.00 0.00 39.92 3.59
3285 5032 3.262420 CCAACTCCACCAATTAGAGTCG 58.738 50.000 0.00 0.00 39.92 4.18
3286 5033 3.010420 GCCAACTCCACCAATTAGAGTC 58.990 50.000 0.00 0.00 39.92 3.36
3287 5034 2.375174 TGCCAACTCCACCAATTAGAGT 59.625 45.455 0.00 0.00 42.58 3.24
3288 5035 3.012518 CTGCCAACTCCACCAATTAGAG 58.987 50.000 0.00 0.00 0.00 2.43
3289 5036 2.375174 ACTGCCAACTCCACCAATTAGA 59.625 45.455 0.00 0.00 0.00 2.10
3290 5037 2.795329 ACTGCCAACTCCACCAATTAG 58.205 47.619 0.00 0.00 0.00 1.73
3291 5038 2.969821 ACTGCCAACTCCACCAATTA 57.030 45.000 0.00 0.00 0.00 1.40
3292 5039 2.969821 TACTGCCAACTCCACCAATT 57.030 45.000 0.00 0.00 0.00 2.32
3293 5040 2.969821 TTACTGCCAACTCCACCAAT 57.030 45.000 0.00 0.00 0.00 3.16
3294 5041 2.738587 TTTACTGCCAACTCCACCAA 57.261 45.000 0.00 0.00 0.00 3.67
3295 5042 2.173782 TCTTTTACTGCCAACTCCACCA 59.826 45.455 0.00 0.00 0.00 4.17
3296 5043 2.858745 TCTTTTACTGCCAACTCCACC 58.141 47.619 0.00 0.00 0.00 4.61
3297 5044 4.261614 CCTTTCTTTTACTGCCAACTCCAC 60.262 45.833 0.00 0.00 0.00 4.02
3298 5045 3.888930 CCTTTCTTTTACTGCCAACTCCA 59.111 43.478 0.00 0.00 0.00 3.86
3410 5157 6.370442 CGTCCCAAAATAAGTGTCACAGATTA 59.630 38.462 5.62 0.00 0.00 1.75
3414 5172 3.188460 CCGTCCCAAAATAAGTGTCACAG 59.812 47.826 5.62 0.00 0.00 3.66
3426 5184 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
3430 5188 0.614134 AACTGTACTCCCTCCGTCCC 60.614 60.000 0.00 0.00 0.00 4.46
3434 5192 1.477295 GGAGAAACTGTACTCCCTCCG 59.523 57.143 17.56 0.00 44.70 4.63
3442 5200 3.391049 ACTTGAAGCGGAGAAACTGTAC 58.609 45.455 0.00 0.00 0.00 2.90
3443 5201 3.746045 ACTTGAAGCGGAGAAACTGTA 57.254 42.857 0.00 0.00 0.00 2.74
3444 5202 2.622064 ACTTGAAGCGGAGAAACTGT 57.378 45.000 0.00 0.00 0.00 3.55
3445 5203 3.914312 TCTACTTGAAGCGGAGAAACTG 58.086 45.455 0.00 0.00 0.00 3.16
3446 5204 4.810191 ATCTACTTGAAGCGGAGAAACT 57.190 40.909 0.00 0.00 0.00 2.66
3447 5205 5.692654 GGATATCTACTTGAAGCGGAGAAAC 59.307 44.000 2.05 0.00 0.00 2.78
3482 5240 5.180117 TCATTTAGCACTTCAGCTCTTGTTC 59.820 40.000 0.00 0.00 45.26 3.18
3648 5406 4.835615 AGGTATCACAACTTCACAGAGAGT 59.164 41.667 0.00 0.00 0.00 3.24
3649 5407 5.398603 AGGTATCACAACTTCACAGAGAG 57.601 43.478 0.00 0.00 0.00 3.20
3650 5408 5.304357 TCAAGGTATCACAACTTCACAGAGA 59.696 40.000 0.00 0.00 0.00 3.10
3651 5409 5.541845 TCAAGGTATCACAACTTCACAGAG 58.458 41.667 0.00 0.00 0.00 3.35
3652 5410 5.545063 TCAAGGTATCACAACTTCACAGA 57.455 39.130 0.00 0.00 0.00 3.41
3653 5411 6.169094 AGATCAAGGTATCACAACTTCACAG 58.831 40.000 0.00 0.00 0.00 3.66
3654 5412 6.114187 AGATCAAGGTATCACAACTTCACA 57.886 37.500 0.00 0.00 0.00 3.58
3655 5413 9.988815 ATATAGATCAAGGTATCACAACTTCAC 57.011 33.333 0.00 0.00 0.00 3.18
3702 5460 0.108585 TGCACGGCTTCTTTCCTCTT 59.891 50.000 0.00 0.00 0.00 2.85
3774 5532 7.837202 ATCATTTGTGCTGGTCAATTTATTG 57.163 32.000 0.00 0.00 39.10 1.90
3775 5533 9.941325 TTAATCATTTGTGCTGGTCAATTTATT 57.059 25.926 0.00 0.00 0.00 1.40
3801 5559 5.128827 TGGAGCACCTTCTTATCGAAGTAAT 59.871 40.000 0.71 0.00 46.23 1.89
3819 5577 7.471539 GCTCTAATACTTGTATAAGGTGGAGCA 60.472 40.741 21.36 0.00 41.73 4.26
3820 5578 6.869388 GCTCTAATACTTGTATAAGGTGGAGC 59.131 42.308 16.08 16.08 38.91 4.70
3821 5579 7.868415 GTGCTCTAATACTTGTATAAGGTGGAG 59.132 40.741 4.12 6.53 38.26 3.86
3822 5580 7.343574 TGTGCTCTAATACTTGTATAAGGTGGA 59.656 37.037 4.12 0.00 38.26 4.02
3823 5581 7.497595 TGTGCTCTAATACTTGTATAAGGTGG 58.502 38.462 4.12 0.00 38.26 4.61
3824 5582 8.942338 TTGTGCTCTAATACTTGTATAAGGTG 57.058 34.615 4.12 0.00 38.26 4.00
3825 5583 8.978472 TCTTGTGCTCTAATACTTGTATAAGGT 58.022 33.333 4.12 0.00 38.26 3.50
3826 5584 9.817809 TTCTTGTGCTCTAATACTTGTATAAGG 57.182 33.333 4.12 0.00 38.26 2.69
3830 5588 8.531982 TGAGTTCTTGTGCTCTAATACTTGTAT 58.468 33.333 0.00 0.00 33.22 2.29
3831 5589 7.892609 TGAGTTCTTGTGCTCTAATACTTGTA 58.107 34.615 0.00 0.00 33.22 2.41
3832 5590 6.759272 TGAGTTCTTGTGCTCTAATACTTGT 58.241 36.000 0.00 0.00 33.22 3.16
3833 5591 7.386299 ACTTGAGTTCTTGTGCTCTAATACTTG 59.614 37.037 0.00 0.00 33.22 3.16
3834 5592 7.386299 CACTTGAGTTCTTGTGCTCTAATACTT 59.614 37.037 0.00 0.00 33.22 2.24
3836 5594 7.054855 CACTTGAGTTCTTGTGCTCTAATAC 57.945 40.000 0.00 0.00 33.22 1.89
3845 5603 2.866156 TCGAAGCACTTGAGTTCTTGTG 59.134 45.455 0.82 0.00 31.92 3.33
3846 5604 3.179443 TCGAAGCACTTGAGTTCTTGT 57.821 42.857 0.82 0.00 31.92 3.16
3847 5605 5.845985 TTATCGAAGCACTTGAGTTCTTG 57.154 39.130 0.82 0.00 31.92 3.02
3849 5607 6.650807 TCAATTTATCGAAGCACTTGAGTTCT 59.349 34.615 0.00 0.00 0.00 3.01
3850 5608 6.738649 GTCAATTTATCGAAGCACTTGAGTTC 59.261 38.462 0.00 0.00 0.00 3.01
3851 5609 6.348540 GGTCAATTTATCGAAGCACTTGAGTT 60.349 38.462 0.00 0.00 0.00 3.01
3852 5610 5.122396 GGTCAATTTATCGAAGCACTTGAGT 59.878 40.000 0.00 0.00 0.00 3.41
3853 5611 5.122239 TGGTCAATTTATCGAAGCACTTGAG 59.878 40.000 0.00 0.00 0.00 3.02
3854 5612 5.000591 TGGTCAATTTATCGAAGCACTTGA 58.999 37.500 0.00 0.00 0.00 3.02
3855 5613 5.295431 TGGTCAATTTATCGAAGCACTTG 57.705 39.130 0.00 0.00 0.00 3.16
3856 5614 4.142600 GCTGGTCAATTTATCGAAGCACTT 60.143 41.667 0.00 0.00 0.00 3.16
3857 5615 3.375299 GCTGGTCAATTTATCGAAGCACT 59.625 43.478 0.00 0.00 0.00 4.40
3858 5616 3.126858 TGCTGGTCAATTTATCGAAGCAC 59.873 43.478 0.00 0.00 34.68 4.40
3859 5617 3.126858 GTGCTGGTCAATTTATCGAAGCA 59.873 43.478 0.00 0.00 37.10 3.91
3861 5619 4.944962 TGTGCTGGTCAATTTATCGAAG 57.055 40.909 0.00 0.00 0.00 3.79
3862 5620 5.697473 TTTGTGCTGGTCAATTTATCGAA 57.303 34.783 0.00 0.00 0.00 3.71
3863 5621 5.414144 TCATTTGTGCTGGTCAATTTATCGA 59.586 36.000 0.00 0.00 0.00 3.59
3865 5623 8.483307 AAATCATTTGTGCTGGTCAATTTATC 57.517 30.769 0.00 0.00 0.00 1.75
3866 5624 8.851541 AAAATCATTTGTGCTGGTCAATTTAT 57.148 26.923 0.00 0.00 0.00 1.40
3868 5626 7.571080 AAAAATCATTTGTGCTGGTCAATTT 57.429 28.000 0.00 0.00 0.00 1.82
3925 5683 4.580580 GTCAGGTTTCAGTCTGTTTGGAAT 59.419 41.667 0.00 0.00 33.13 3.01
3926 5684 3.945285 GTCAGGTTTCAGTCTGTTTGGAA 59.055 43.478 0.00 0.00 33.13 3.53
3959 5717 5.888105 AGACACATGCTTAAAATGCTCATC 58.112 37.500 0.00 0.00 0.00 2.92
3978 5736 6.358974 TCACCATCTTGAAATGTAGAGACA 57.641 37.500 0.00 0.00 40.72 3.41
3994 5752 2.357009 GCATGACCTTGACATCACCATC 59.643 50.000 0.00 0.00 0.00 3.51
4012 5852 5.242838 TCCGACAAATTTAAGAACAAGGCAT 59.757 36.000 0.00 0.00 0.00 4.40
4013 5853 4.580995 TCCGACAAATTTAAGAACAAGGCA 59.419 37.500 0.00 0.00 0.00 4.75
4025 5865 5.335976 GCCTTCTTCTGAATCCGACAAATTT 60.336 40.000 0.00 0.00 0.00 1.82
4080 5920 3.024547 TGGGTCCTAGATTCAAGTCTCG 58.975 50.000 0.00 0.00 0.00 4.04
4143 7862 6.241207 TGTCCAATCTTTTTGATCGTTCTC 57.759 37.500 0.00 0.00 33.57 2.87
4178 7897 2.507484 TCTGCAACATGTCCCTTGAAG 58.493 47.619 0.00 0.00 0.00 3.02
4184 7903 0.729116 CGACATCTGCAACATGTCCC 59.271 55.000 23.47 8.94 45.07 4.46
4185 7904 1.129251 CACGACATCTGCAACATGTCC 59.871 52.381 23.47 12.14 45.07 4.02
4193 7912 0.671472 CCTCTTGCACGACATCTGCA 60.671 55.000 0.00 0.00 42.95 4.41
4203 7922 2.163010 CACCATCATGAACCTCTTGCAC 59.837 50.000 0.00 0.00 0.00 4.57
4263 7982 7.847711 ACTAGAATTCTATGCAGGAGTGTAT 57.152 36.000 15.47 0.00 33.05 2.29
4344 8064 3.196901 GTGGTCTTTTGGTGGTCCTTTTT 59.803 43.478 0.00 0.00 34.23 1.94
4348 8068 0.923358 TGTGGTCTTTTGGTGGTCCT 59.077 50.000 0.00 0.00 34.23 3.85
4349 8069 1.770294 TTGTGGTCTTTTGGTGGTCC 58.230 50.000 0.00 0.00 0.00 4.46
4350 8070 2.481276 GCTTTGTGGTCTTTTGGTGGTC 60.481 50.000 0.00 0.00 0.00 4.02
4351 8071 1.480545 GCTTTGTGGTCTTTTGGTGGT 59.519 47.619 0.00 0.00 0.00 4.16
4352 8072 1.756538 AGCTTTGTGGTCTTTTGGTGG 59.243 47.619 0.00 0.00 0.00 4.61
4353 8073 4.520492 AGATAGCTTTGTGGTCTTTTGGTG 59.480 41.667 0.00 0.00 0.00 4.17
4354 8074 4.520492 CAGATAGCTTTGTGGTCTTTTGGT 59.480 41.667 0.00 0.00 0.00 3.67
4355 8075 4.616835 GCAGATAGCTTTGTGGTCTTTTGG 60.617 45.833 3.58 0.00 41.15 3.28
4356 8076 4.479619 GCAGATAGCTTTGTGGTCTTTTG 58.520 43.478 3.58 0.00 41.15 2.44
4418 8138 5.655974 TCTCCATATATCAGACTGATCCAGC 59.344 44.000 21.20 0.00 38.26 4.85
4419 8139 7.901283 ATCTCCATATATCAGACTGATCCAG 57.099 40.000 21.20 9.99 38.26 3.86
4420 8140 8.785859 TCTATCTCCATATATCAGACTGATCCA 58.214 37.037 21.20 10.81 38.26 3.41
4421 8141 9.639563 TTCTATCTCCATATATCAGACTGATCC 57.360 37.037 21.20 0.00 38.26 3.36
4424 8144 9.473007 CCTTTCTATCTCCATATATCAGACTGA 57.527 37.037 7.80 7.80 0.00 3.41
4425 8145 8.196771 GCCTTTCTATCTCCATATATCAGACTG 58.803 40.741 0.00 0.00 0.00 3.51
4439 8159 1.141858 CCACCCCTGCCTTTCTATCTC 59.858 57.143 0.00 0.00 0.00 2.75
4443 8163 2.047769 TTACCACCCCTGCCTTTCTA 57.952 50.000 0.00 0.00 0.00 2.10
4458 8178 8.905103 ACTTGTTTAACGCATCAATTATTACC 57.095 30.769 0.00 0.00 0.00 2.85
4462 8182 8.181573 CACCTACTTGTTTAACGCATCAATTAT 58.818 33.333 0.00 0.00 0.00 1.28
4463 8183 7.388224 TCACCTACTTGTTTAACGCATCAATTA 59.612 33.333 0.00 0.00 0.00 1.40
4464 8184 6.205853 TCACCTACTTGTTTAACGCATCAATT 59.794 34.615 0.00 0.00 0.00 2.32
4465 8185 5.703592 TCACCTACTTGTTTAACGCATCAAT 59.296 36.000 0.00 0.00 0.00 2.57
4466 8186 5.057819 TCACCTACTTGTTTAACGCATCAA 58.942 37.500 0.00 0.00 0.00 2.57
4467 8187 4.633175 TCACCTACTTGTTTAACGCATCA 58.367 39.130 0.00 0.00 0.00 3.07
4468 8188 5.178809 AGTTCACCTACTTGTTTAACGCATC 59.821 40.000 0.00 0.00 0.00 3.91
4469 8189 5.061179 AGTTCACCTACTTGTTTAACGCAT 58.939 37.500 0.00 0.00 0.00 4.73
4470 8190 4.444536 AGTTCACCTACTTGTTTAACGCA 58.555 39.130 0.00 0.00 0.00 5.24
4471 8191 5.413969 AAGTTCACCTACTTGTTTAACGC 57.586 39.130 0.00 0.00 37.00 4.84
4472 8192 9.940166 AAATAAAGTTCACCTACTTGTTTAACG 57.060 29.630 0.00 0.00 38.33 3.18
4477 8197 8.745590 ACAACAAATAAAGTTCACCTACTTGTT 58.254 29.630 0.00 0.00 38.33 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.